Query 026032
Match_columns 244
No_of_seqs 90 out of 92
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:02:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iuo_A ATP-dependent DNA helic 9.2 1.1E+02 0.0037 23.5 1.2 14 128-141 32-45 (122)
2 2ofg_X Zinc-transporting ATPas 8.4 1.3E+02 0.0045 21.6 1.3 9 77-85 102-110 (111)
3 1u07_A TONB protein; beta-hair 7.1 49 0.0017 23.5 -1.5 42 130-171 13-54 (90)
4 1ica_A Insect defensin A; anti 7.0 1.3E+02 0.0043 20.0 0.5 8 12-19 2-9 (40)
5 2ln4_A Coprisin; antimicrobial 6.9 1.4E+02 0.0047 20.3 0.7 9 12-20 2-10 (44)
6 2bn5_B U1 small nuclear ribonu 5.5 3.2E+02 0.011 16.4 1.7 14 166-179 6-20 (26)
7 2e2s_A Agelenin; cystine knot, 5.4 1.7E+02 0.0058 19.1 0.4 13 63-75 16-28 (36)
8 3ax1_A Serrate RNA effector mo 5.2 1.8E+02 0.0062 27.1 0.7 19 226-244 206-226 (358)
9 2csf_A DNA-binding protein SAT 5.1 1.6E+02 0.0053 23.2 0.1 15 12-26 52-66 (101)
10 2qn0_A Neurotoxin; botulism, s 5.0 1.8E+02 0.0061 28.0 0.6 25 219-244 215-239 (430)
No 1
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=9.20 E-value=1.1e+02 Score=23.51 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=12.0
Q ss_pred CCChhHHhhhhhcc
Q 026032 128 PTSVPEVAKQRELS 141 (244)
Q Consensus 128 pts~~evAKQrELS 141 (244)
--|+.|||++|.|+
T Consensus 32 G~sleeIA~~R~L~ 45 (122)
T 3iuo_A 32 KVALDDIAVSHGLD 45 (122)
T ss_dssp TCCHHHHHHHTTCC
T ss_pred CCCHHHHHHHcCCC
Confidence 35899999999986
No 2
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=8.42 E-value=1.3e+02 Score=21.61 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q 026032 77 SGIFVANGE 85 (244)
Q Consensus 77 sgIFa~~~e 85 (244)
.|||+++.|
T Consensus 102 ~~~~~~~~e 110 (111)
T 2ofg_X 102 AGEFNLKQE 110 (111)
T ss_dssp CCCCCCCCC
T ss_pred ccccCCccc
Confidence 379998766
No 3
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=7.15 E-value=49 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=30.3
Q ss_pred ChhHHhhhhhccCCcccchhhhhhhhhhhhhhhhhcCCCCCC
Q 026032 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (244)
Q Consensus 130 s~~evAKQrELSGt~~se~d~K~~Kqis~aK~kELsG~dIF~ 171 (244)
..|+.|+++.+.|++.=.-.+...=++.+.++.+=+|+.+|.
T Consensus 13 ~YP~~a~~~~~~G~V~v~~~i~~~G~v~~~~v~~ssg~~~ld 54 (90)
T 1u07_A 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFE 54 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSH
T ss_pred CCcHHHHHCCCceEEEEEEEECCCCCEEEEEEEecCCcHHHH
Confidence 346788999999988755445555567788877777887665
No 4
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=6.98 E-value=1.3e+02 Score=20.00 Aligned_cols=8 Identities=50% Similarity=0.538 Sum_probs=5.7
Q ss_pred ccccccCC
Q 026032 12 TSDLLTWP 19 (244)
Q Consensus 12 tadLltW~ 19 (244)
|-|||+|=
T Consensus 2 tCdlls~~ 9 (40)
T 1ica_A 2 TCDLLSGT 9 (40)
T ss_dssp CCSCSSTT
T ss_pred eEEeeccc
Confidence 56888763
No 5
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=6.87 E-value=1.4e+02 Score=20.29 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=6.9
Q ss_pred ccccccCCC
Q 026032 12 TSDLLTWPE 20 (244)
Q Consensus 12 tadLltW~e 20 (244)
|-|||+|.-
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 679999764
No 6
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=5.48 E-value=3.2e+02 Score=16.40 Aligned_cols=14 Identities=50% Similarity=0.928 Sum_probs=8.8
Q ss_pred CCCCCC-CCCCCCCc
Q 026032 166 GHDIFS-PAPEIQPR 179 (244)
Q Consensus 166 G~dIF~-pp~~~kp~ 179 (244)
-||+|. ||+.+.-|
T Consensus 6 hhnmfsvppppi~gr 20 (26)
T 2bn5_B 6 HHNMFSVPPPPILGR 20 (26)
T ss_dssp CCCCCSCCCCSCCCC
T ss_pred cCceecCCCCCcccC
Confidence 478998 55555443
No 7
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=5.38 E-value=1.7e+02 Score=19.05 Aligned_cols=13 Identities=46% Similarity=0.807 Sum_probs=10.6
Q ss_pred cCCCCcccccccc
Q 026032 63 KKPCSGYKLKEIN 75 (244)
Q Consensus 63 rK~~S~aK~KEms 75 (244)
-+=||+-|.||++
T Consensus 16 PrCCsgl~CKeL~ 28 (36)
T 2e2s_A 16 PRCCSGLKCKELS 28 (36)
T ss_dssp CCBCTTCCEEEEE
T ss_pred CcccCCCceeeee
Confidence 4668999999986
No 8
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding; 2.74A {Arabidopsis thaliana}
Probab=5.23 E-value=1.8e+02 Score=27.10 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.8
Q ss_pred CccchhhHHHHhhhcc--ccC
Q 026032 226 YSFHLNLFFCFLKRLH--CFY 244 (244)
Q Consensus 226 d~~~~~~~~~~~~~~~--~~~ 244 (244)
+.--|.+..++|.|.| |||
T Consensus 206 ~~~~LD~~i~YLRrVH~~dYY 226 (358)
T 3ax1_A 206 GVELLDTLVTYLWRVHGLDYY 226 (358)
T ss_dssp SHHHHHHHHHHHHHHHCEEGG
T ss_pred hHHHHHHHHHHHHHHHccccc
Confidence 4567899999999999 666
No 9
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=5.06 E-value=1.6e+02 Score=23.21 Aligned_cols=15 Identities=40% Similarity=0.888 Sum_probs=11.5
Q ss_pred ccccccCCCCCCCCC
Q 026032 12 TSDLLTWPEAPSSDS 26 (244)
Q Consensus 12 tadLltW~e~~~~~~ 26 (244)
-.|||.|-|.|-|++
T Consensus 52 LSelLR~~enPkP~~ 66 (101)
T 2csf_A 52 LCELLRWKENPSPEN 66 (101)
T ss_dssp HHHHHHHCCCCCTTC
T ss_pred HHHHHhcccCCCcch
Confidence 358999999887754
No 10
>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium botulinum} PDB: 3deb_A
Probab=5.05 E-value=1.8e+02 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.4
Q ss_pred cCCccCCCccchhhHHHHhhhccccC
Q 026032 219 RNFLFSLYSFHLNLFFCFLKRLHCFY 244 (244)
Q Consensus 219 Gn~IFk~d~~~~~~~~~~~~~~~~~~ 244 (244)
|-..|--|+| |-|.-|..+-|||.|
T Consensus 215 ~~~~F~~DPA-l~LmHELIHsLH~LY 239 (430)
T 2qn0_A 215 SKSEFCMDPI-LILMHELNHAMHNLY 239 (430)
T ss_dssp CCCCEECCHH-HHHHHHHHHHHHHHT
T ss_pred cccccccCHH-HHHHHHHHHHHHhhc
Confidence 4456777776 679999999999987
Done!