Query 026032
Match_columns 244
No_of_seqs 90 out of 92
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u07a_ d.212.1.2 (A:) TonB {E 22.1 4.6 0.00034 27.7 -1.5 42 130-171 13-54 (90)
2 d1m7ja2 b.92.1.6 (A:420-480) N 17.2 46 0.0033 21.3 2.8 40 12-55 7-46 (61)
3 d2epra1 g.37.1.1 (A:350-384) P 16.0 16 0.0011 22.2 0.1 19 212-232 5-23 (35)
4 d2cora2 g.39.1.3 (A:8-42) Pinc 11.1 36 0.0026 20.7 0.8 11 221-231 23-33 (35)
5 d1c52a_ a.3.1.1 (A:) Cytochrom 9.3 73 0.0053 22.1 2.1 24 116-139 90-113 (131)
6 d1oj4a2 d.58.26.5 (A:164-283) 8.0 35 0.0025 24.2 -0.2 13 8-20 14-26 (120)
7 d1ueka2 d.58.26.5 (A:149-268) 5.7 54 0.004 22.6 -0.2 15 68-82 76-92 (120)
8 d1icaa_ g.3.7.4 (A:) Defensin 5.5 80 0.0058 19.5 0.5 9 12-20 2-10 (40)
9 d1kcpa_ g.3.6.1 (A:) Conotoxin 4.4 1.2E+02 0.0086 17.0 0.7 11 208-218 2-13 (27)
10 d1gh9a_ g.41.6.1 (A:) Hypothet 3.9 1.9E+02 0.014 19.5 1.5 36 136-175 33-69 (71)
No 1
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Probab=22.12 E-value=4.6 Score=27.68 Aligned_cols=42 Identities=12% Similarity=0.319 Sum_probs=35.4
Q ss_pred ChhHHhhhhhccCCcccchhhhhhhhhhhhhhhhhcCCCCCC
Q 026032 130 SVPEVAKQRELSGSLQSESDLKTKKQISDAKFKEISGHDIFS 171 (244)
Q Consensus 130 s~~evAKQrELSGt~~se~d~K~~Kqis~aK~kELsG~dIF~ 171 (244)
..|+.|+++.+.|++.=+-+....=++.+.++-+-+|+++|.
T Consensus 13 ~YP~~A~~~g~eG~V~v~f~I~~~G~v~~~~v~~ssg~~~ld 54 (90)
T d1u07a_ 13 QYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFE 54 (90)
T ss_dssp CCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSSSSH
T ss_pred CCCHHHHHCCCeEEEEEEEEEeCCCCEeEEEEEECCCchHHH
Confidence 467999999999999877666667778899999999999986
No 2
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=17.18 E-value=46 Score=21.25 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=27.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcceeeeCCccchH
Q 026032 12 TSDLLTWPEAPSSDSSHPPASAPRSHQPSDGVSKVLFGGQITDE 55 (244)
Q Consensus 12 tadLltW~e~~~~~~~~~~~~~~R~~QP~~giS~IsFG~q~T~E 55 (244)
-|||.-|...--.+. ..-.+++||+.||..|.-.|+...+
T Consensus 7 ~ADlvvfDp~~i~d~----~~~~~~~~~~~Gi~~v~VnG~~v~~ 46 (61)
T d1m7ja2 7 YADLVVFDPATVADS----ATFEHPTERAAGIHSVYVNGAAVWE 46 (61)
T ss_dssp BCCEEEECTTTCBCC----CCSSSTTCCCBSEEEEEETTEEEEE
T ss_pred CCCEEEECHHHccCc----ccccccccccceeEEEEECCEEEEE
Confidence 488888863322222 3456778999999999888887654
No 3
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.98 E-value=16 Score=22.23 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=13.6
Q ss_pred ccccccccCCccCCCccchhh
Q 026032 212 VSYFCYARNFLFSLYSFHLNL 232 (244)
Q Consensus 212 qK~~eLtGn~IFk~d~~~~~~ 232 (244)
|-.-|++|. +| .|++|||-
T Consensus 5 ~~~ce~cgk-~f-rdvyhlnr 23 (35)
T d2epra1 5 QVACEICGK-IF-RDVYHLNR 23 (35)
T ss_dssp SEEETTTTE-EE-SSHHHHHH
T ss_pred hhhHHHHHH-HH-HHHHHHHh
Confidence 335678887 66 47999984
No 4
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=36 Score=20.66 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=8.6
Q ss_pred CccCCCccchh
Q 026032 221 FLFSLYSFHLN 231 (244)
Q Consensus 221 ~IFk~d~~~~~ 231 (244)
-+|++|++|-.
T Consensus 23 L~Fr~d~YHp~ 33 (35)
T d2cora2 23 LIFKNDPYHPD 33 (35)
T ss_dssp CCCSSSCCCTT
T ss_pred ceecCCCCCCC
Confidence 37999999853
No 5
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=9.34 E-value=73 Score=22.06 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=17.0
Q ss_pred eecCcccCCCCCCCChhHHhhhhh
Q 026032 116 SFSAEETVSPKKPTSVPEVAKQRE 139 (244)
Q Consensus 116 sFgee~s~sPkKpts~~evAKQrE 139 (244)
+||.........|.|..|||+.|+
T Consensus 90 ~~gn~~~~~~~~~~t~~~v~~~R~ 113 (131)
T d1c52a_ 90 AWGDAKKVKGFKPFTAEEVKKLRA 113 (131)
T ss_dssp TTSTGGGSTTCCCCCHHHHHHHTT
T ss_pred HcCCCCcccCCCCCCHHHHHHHHc
Confidence 355444445667889999999885
No 6
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}
Probab=8.02 E-value=35 Score=24.21 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=8.8
Q ss_pred CCCCccccccCCC
Q 026032 8 SHVSTSDLLTWPE 20 (244)
Q Consensus 8 ~htstadLltW~e 20 (244)
-|.||++.....+
T Consensus 14 ~~vST~~if~~~~ 26 (120)
T d1oj4a2 14 VSIPTPVIFKDPE 26 (120)
T ss_dssp CCCCHHHHHTCTT
T ss_pred CCcChHHHHhCcC
Confidence 4678888876543
No 7
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}
Probab=5.67 E-value=54 Score=22.61 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=10.9
Q ss_pred ccccccccCCC--CCCC
Q 026032 68 GYKLKEINGSG--IFVA 82 (244)
Q Consensus 68 ~aK~KEmsGsg--IFa~ 82 (244)
++..--||||| +|+-
T Consensus 76 g~~~~~mSGSGst~F~l 92 (120)
T d1ueka2 76 GLRGVLMSGSGSAFFGL 92 (120)
T ss_dssp TCEEEEECTTSSCEEEE
T ss_pred hhhheeecCCCCeEEEE
Confidence 55556799999 7764
No 8
>d1icaa_ g.3.7.4 (A:) Defensin A {Flesh fly (Phormia terranovae) [TaxId: 34676]}
Probab=5.49 E-value=80 Score=19.52 Aligned_cols=9 Identities=44% Similarity=0.449 Sum_probs=6.8
Q ss_pred ccccccCCC
Q 026032 12 TSDLLTWPE 20 (244)
Q Consensus 12 tadLltW~e 20 (244)
|-|||+|-.
T Consensus 2 TCDllS~~~ 10 (40)
T d1icaa_ 2 TCDLLSGTG 10 (40)
T ss_dssp CCSCSSTTS
T ss_pred ceeecccCC
Confidence 678888764
No 9
>d1kcpa_ g.3.6.1 (A:) Conotoxin {Conus purpurascens, kappa-pVIIa [TaxId: 41690]}
Probab=4.40 E-value=1.2e+02 Score=17.02 Aligned_cols=11 Identities=9% Similarity=0.290 Sum_probs=7.6
Q ss_pred cccccc-ccccc
Q 026032 208 KVSNVS-YFCYA 218 (244)
Q Consensus 208 k~~~qK-~~eLt 218 (244)
||.+|| |+.|.
T Consensus 2 ripnqkcfqhld 13 (27)
T d1kcpa_ 2 RIPNQKCFQHLD 13 (27)
T ss_dssp BCTTSBCCTTCC
T ss_pred CCCcHHHHHHHH
Confidence 677888 66653
No 10
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.85 E-value=1.9e+02 Score=19.51 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred hhhhccCCcccch-hhhhhhhhhhhhhhhhcCCCCCCCCCC
Q 026032 136 KQRELSGSLQSES-DLKTKKQISDAKFKEISGHDIFSPAPE 175 (244)
Q Consensus 136 KQrELSGt~~se~-d~K~~Kqis~aK~kELsG~dIF~pp~~ 175 (244)
|||.+=|..++-. ..-+-.++- -|+-|+-||+-|++
T Consensus 33 K~RRIfk~a~~~eeAse~Vq~mQ----eEiYG~~~F~~~s~ 69 (71)
T d1gh9a_ 33 KDRRIFGRADDFEEASELVRKLQ----EEKYGSCHFTNPSK 69 (71)
T ss_dssp CSSSCBSCCSSHHHHHHHHHHHS----SCCCSCTTSSCTTS
T ss_pred hhhhHHhhhccHHHHHHHHHHHH----HHHhcccccCCccc
Confidence 5666666666322 222233333 36789999996654
Done!