BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026033
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 8/143 (5%)
Query: 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDY 74
+ I +Q++DG I +V+ E+A I + GM + LP VN AI V+ +
Sbjct: 2 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQW 55
Query: 75 CRFHQV-PGRSNKER-KMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG 132
C H+ PG S + ++D++F+++D L EL AA+ L +K L+D+T + +A +I+G
Sbjct: 56 CTHHKDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG 115
Query: 133 KTPEEIRETFHLPDDLTEEEKLE 155
KTPEEIR+TF++ +D TEEE+ +
Sbjct: 116 KTPEEIRKTFNIKNDFTEEEEAQ 138
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 13/156 (8%)
Query: 11 PEMKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFG 69
P M S I +Q++DG I +V+ E+A I + GM + + LP VN AI
Sbjct: 2 PHMPS-IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLP-NVNAAILK 59
Query: 70 LVLDYCRFHQVPGRS-----NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLV 119
V+ +C H+ NKE++ ++D++F+++D L EL AA+ L +K L+
Sbjct: 60 KVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLL 119
Query: 120 DLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLE 155
D+T + +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 120 DVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 155
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 8/139 (5%)
Query: 19 VQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFH 78
+Q++DG I +V+ E+A I + GM + LP VN AI V+ +C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQWCTHH 59
Query: 79 QV-PGRSNKER-KMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPE 136
+ PG S + ++D++F+++D L EL AA+ L +K L+D+T + +A +I+GKTPE
Sbjct: 60 KDDPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPE 119
Query: 137 EIRETFHLPDDLTEEEKLE 155
EIR+TF++ +D TEEE+ +
Sbjct: 120 EIRKTFNIKNDFTEEEEAQ 138
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 89/152 (58%), Gaps = 12/152 (7%)
Query: 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFGLVLD 73
+ I +Q++DG I +V+ E+A I + GM + + LP VN AI V+
Sbjct: 1 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLP-NVNAAILKKVIQ 59
Query: 74 YCRFHQVPGRS-----NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTS 123
+C H+ NKE++ ++D++F+++D L EL AA+ L +K L+D+T
Sbjct: 60 WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 119
Query: 124 RALARIIEGKTPEEIRETFHLPDDLTEEEKLE 155
+ +A +I+GKTPEEIR+TF++ +D TEEE+ +
Sbjct: 120 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQ 151
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 19 VQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFH 78
+Q++DG I +V+ E+A I + GM + LP VN AI V+ +C H
Sbjct: 6 LQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQWCTHH 59
Query: 79 QVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEI 138
+ + ++D++F+++D L EL AA+ L +K L+D+T + +A +I+GKTPEEI
Sbjct: 60 K--DDPPDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEI 117
Query: 139 RETFHLPDDLTEEEKLE 155
R+TF++ +D TEEE+ +
Sbjct: 118 RKTFNIKNDFTEEEEAQ 134
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 83/144 (57%), Gaps = 16/144 (11%)
Query: 17 IWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCR 76
I +Q++DG I +V+ E+A I + GM + LP VN AI V+ +C
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQWCT 57
Query: 77 FHQVPGRS-----NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRAL 126
H+ NKE++ ++D++F+++D L EL AA+ L +K L+D+T + +
Sbjct: 58 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 117
Query: 127 ARIIEGKTPEEIRETFHLPDDLTE 150
A +I+GKTPEEIR+TF++ +D TE
Sbjct: 118 ANMIKGKTPEEIRKTFNIKNDFTE 141
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 17 IWVQTTDGSIQQVEEEVAM----FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVL 72
I ++++DG +VEE VA+ M+ + + G + LP V I V+
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG--------VPLP-NVTSKILAKVI 56
Query: 73 DYCRFH-----------QVPGRSNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDL 121
+YC+ H + S+ + K +D F+++D L EL AA+ L +K L+DL
Sbjct: 57 EYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDL 116
Query: 122 TSRALARIIEGKTPEEIRETFHLPDDLT 149
T + +A +I+GKTPEEIR TF++ +D T
Sbjct: 117 TCQTVADMIKGKTPEEIRTTFNIKNDFT 144
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 16/137 (11%)
Query: 17 IWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCR 76
I +Q++DG I +V+ E+A I + GM + LP VN AI V+ +C
Sbjct: 3 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-----PVPLP-NVNAAILKKVIQWCT 56
Query: 77 FHQVPGRS-----NKERK-----MFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRAL 126
H+ NKE++ ++D++F+++D L EL AA+ L +K L+D+T + +
Sbjct: 57 HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 116
Query: 127 ARIIEGKTPEEIRETFH 143
A +I+GKTPEEIR+TF+
Sbjct: 117 ANMIKGKTPEEIRKTFN 133
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 45/63 (71%)
Query: 91 FDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150
+D +F+++D + L E+ AA+ L +KPL+D + +A +I G++PEEIR TF++ +D T
Sbjct: 94 WDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTP 153
Query: 151 EEK 153
EE+
Sbjct: 154 EEE 156
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%)
Query: 91 FDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150
+D +F+++D + L E+ AA+ L +KPL+D + +A I G++PEEIR TF++ +D T
Sbjct: 94 WDREFLKVDQEXLYEIILAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTP 153
Query: 151 EEK 153
EE+
Sbjct: 154 EEE 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,478,240
Number of Sequences: 62578
Number of extensions: 232229
Number of successful extensions: 514
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 10
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)