Query 026033
Match_columns 244
No_of_seqs 150 out of 756
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 7.6E-44 1.6E-48 299.2 14.4 146 13-160 3-157 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 2.7E-39 5.9E-44 260.1 12.3 142 15-160 2-152 (158)
3 smart00512 Skp1 Found in Skp1 99.9 1.4E-26 3.1E-31 180.7 10.3 100 15-115 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 3E-24 6.4E-29 160.3 4.0 72 88-159 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 3.8E-18 8.3E-23 121.9 5.5 60 16-79 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.6 4.1E-15 8.8E-20 114.9 7.0 96 14-115 16-112 (112)
7 PF00651 BTB: BTB/POZ domain; 98.1 1.6E-05 3.4E-10 60.7 7.7 99 14-128 10-109 (111)
8 PHA02713 hypothetical protein; 97.9 6.6E-05 1.4E-09 74.3 9.6 106 14-139 25-132 (557)
9 smart00225 BTB Broad-Complex, 97.6 0.00016 3.4E-09 51.7 6.0 85 21-123 5-90 (90)
10 PHA03098 kelch-like protein; P 97.3 0.0011 2.4E-08 64.5 9.4 96 15-132 10-107 (534)
11 PHA02790 Kelch-like protein; P 97.2 0.00078 1.7E-08 65.4 6.7 95 18-130 24-120 (480)
12 KOG4441 Proteins containing BT 96.5 0.007 1.5E-07 60.4 7.6 94 16-128 38-132 (571)
13 KOG2716 Polymerase delta-inter 90.6 1.5 3.2E-05 39.3 8.1 102 15-133 5-108 (230)
14 KOG3433 Protein involved in me 86.5 0.68 1.5E-05 40.2 3.1 38 107-149 161-200 (203)
15 KOG4682 Uncharacterized conser 84.0 2 4.3E-05 41.6 5.3 108 24-151 78-188 (488)
16 COG5124 Protein predicted to b 83.7 0.85 1.8E-05 39.5 2.4 31 114-149 174-204 (209)
17 KOG4350 Uncharacterized conser 71.4 22 0.00048 34.9 8.2 192 14-216 44-270 (620)
18 KOG0783 Uncharacterized conser 65.4 11 0.00024 40.0 5.1 110 16-139 712-824 (1267)
19 PF11822 DUF3342: Domain of un 63.6 13 0.00029 34.8 5.0 89 24-131 13-105 (317)
20 PF02214 BTB_2: BTB/POZ domain 61.9 3.8 8.2E-05 30.5 0.9 83 23-122 6-94 (94)
21 PF03962 Mnd1: Mnd1 family; I 53.5 12 0.00026 32.3 2.7 42 103-149 144-187 (188)
22 PF03656 Pam16: Pam16; InterP 46.8 17 0.00037 29.6 2.5 31 129-159 51-81 (127)
23 KOG3442 Uncharacterized conser 44.2 29 0.00064 28.4 3.4 53 131-183 54-119 (132)
24 PF09278 MerR-DNA-bind: MerR, 42.8 32 0.00069 23.6 3.1 39 131-183 13-51 (65)
25 PF14748 P5CR_dimer: Pyrroline 39.3 50 0.0011 25.6 4.0 71 105-175 26-103 (107)
26 PRK05365 malonic semialdehyde 33.7 24 0.00051 29.8 1.5 36 105-150 130-165 (195)
27 PF11978 MVP_shoulder: Shoulde 31.0 40 0.00087 27.3 2.2 42 106-147 36-90 (118)
28 PF02519 Auxin_inducible: Auxi 30.8 2E+02 0.0043 22.3 6.1 59 14-75 38-99 (100)
29 cd02148 Nitroreductase_5 Nitro 30.3 27 0.00058 29.2 1.2 35 106-150 124-158 (185)
30 cd05029 S-100A6 S-100A6: S-100 26.8 59 0.0013 24.3 2.5 44 116-159 10-59 (88)
31 KOG0511 Ankyrin repeat protein 26.0 1.8E+02 0.004 28.4 6.1 107 22-132 298-432 (516)
32 COG4957 Predicted transcriptio 24.0 62 0.0013 27.0 2.2 34 132-183 98-131 (148)
33 TIGR01999 iscU FeS cluster ass 22.6 87 0.0019 24.9 2.8 38 106-143 50-88 (124)
34 PF15063 TC1: Thyroid cancer p 22.4 55 0.0012 24.6 1.5 42 124-165 28-69 (79)
35 cd00167 SANT 'SWI3, ADA2, N-Co 22.2 75 0.0016 19.2 1.9 21 123-143 22-42 (45)
36 PF12556 CobS_N: Cobaltochelat 22.0 51 0.0011 21.2 1.1 12 138-149 14-25 (36)
37 PRK13266 Thf1-like protein; Re 22.0 1.6E+02 0.0034 26.4 4.6 75 99-175 72-146 (225)
38 TIGR01689 EcbF-BcbF capsule bi 21.8 1.2E+02 0.0026 24.5 3.5 21 62-82 60-80 (126)
39 KOG2609 Cyclin D-interacting p 21.6 39 0.00085 30.2 0.7 60 160-227 155-215 (228)
40 TIGR03419 NifU_clost FeS clust 21.4 1E+02 0.0022 24.4 3.0 38 106-143 46-84 (121)
41 PRK11325 scaffold protein; Pro 21.3 94 0.002 24.9 2.8 38 106-143 52-90 (127)
42 PF08182 Pedibin: Pedibin/Hym- 21.2 1.2E+02 0.0027 19.3 2.6 25 165-189 5-33 (35)
43 PF00249 Myb_DNA-binding: Myb- 21.2 94 0.002 20.1 2.3 21 122-142 23-44 (48)
44 cd04752 Commd4 COMM_Domain con 21.1 3.3E+02 0.0072 22.9 6.2 71 98-185 22-98 (174)
45 PRK11053 dihydropteridine redu 20.9 67 0.0015 27.5 2.0 34 103-146 147-180 (217)
46 PF13518 HTH_28: Helix-turn-he 20.3 1.3E+02 0.0029 19.1 2.9 21 125-145 5-25 (52)
47 smart00717 SANT SANT SWI3, AD 20.2 89 0.0019 19.1 2.0 20 124-143 25-44 (49)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-44 Score=299.20 Aligned_cols=146 Identities=35% Similarity=0.548 Sum_probs=133.1
Q ss_pred CCceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCC---------
Q 026033 13 MKSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR--------- 83 (244)
Q Consensus 13 ~~~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~--------- 83 (244)
++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 3 ~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~ 80 (162)
T KOG1724|consen 3 SKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKELP 80 (162)
T ss_pred CCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHccccccccccccccc
Confidence 46899999999999999999999999999999999885322 599999 7999999999999999998642
Q ss_pred CchhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 026033 84 SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 160 (244)
Q Consensus 84 s~~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~ 160 (244)
....++.||++|+++|..+||+|+.|||||+|++|+++||++||+|++||||+|||++|||++|+||||+.++++++
T Consensus 81 ~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~ 157 (162)
T KOG1724|consen 81 EETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN 157 (162)
T ss_pred ccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence 22348999999999999999999999999999999999999999999999999999999999999999887777654
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-39 Score=260.12 Aligned_cols=142 Identities=32% Similarity=0.508 Sum_probs=129.7
Q ss_pred ceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCC---C------c
Q 026033 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGR---S------N 85 (244)
Q Consensus 15 ~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~---s------~ 85 (244)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+. .+-|||+| +|+|.+|.+|++||+||+.... . .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 57999999999999999999999999999887553 47789999 8999999999999999997421 1 1
Q ss_pred hhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhcccccc
Q 026033 86 KERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV 160 (244)
Q Consensus 86 ~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~ 160 (244)
.....||+.|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.+++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEn 152 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKEN 152 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhc
Confidence 345679999999999999999999999999999999999999999999999999999999999999999998865
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.94 E-value=1.4e-26 Score=180.68 Aligned_cols=100 Identities=32% Similarity=0.504 Sum_probs=88.7
Q ss_pred ceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCc---hhhccc
Q 026033 15 SYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSN---KERKMF 91 (244)
Q Consensus 15 ~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~---~~l~~w 91 (244)
++|+|+|+||++|.|++++|++|++|++|+.+.+.+...+.+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999999876543233689999 899999999999999999865332 358999
Q ss_pred hhhhcccChHHHHHHHhhcccCCc
Q 026033 92 DEKFIRMDTKKLCELTSAADSLQL 115 (244)
Q Consensus 92 D~eFl~id~~~L~eLi~AAnyLdI 115 (244)
|.+|++++.+.||+|+.|||||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.89 E-value=3e-24 Score=160.26 Aligned_cols=72 Identities=39% Similarity=0.635 Sum_probs=62.2
Q ss_pred hccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhccccc
Q 026033 88 RKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 159 (244)
Q Consensus 88 l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~ 159 (244)
+++||++|++++.+.|++|+.||+||+|++|+++||++||++|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999987764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.73 E-value=3.8e-18 Score=121.93 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=53.7
Q ss_pred eEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcC
Q 026033 16 YIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQ 79 (244)
Q Consensus 16 ~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~ 79 (244)
+|+|+|+||+.|.|+.++|++|++|++|+.+.+.. ..+|||| +|++++|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999876642 2279999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.58 E-value=4.1e-15 Score=114.89 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=83.9
Q ss_pred CceEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCC-CCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccch
Q 026033 14 KSYIWVQTTDGSIQQVEEEVAMFCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (244)
Q Consensus 14 ~~~I~L~SsDG~~f~V~~~~a~~S~~I~~~l~~~~~~~-~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD 92 (244)
+.+|+|+|+||.+|.+.+++|+.|++||.|+...+... ..++.+.++ ++++.+|+||++|+.+...+..+..++++|
T Consensus 16 ~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF- 93 (112)
T KOG3473|consen 16 SMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPEF- 93 (112)
T ss_pred hhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCCC-
Confidence 46999999999999999999999999999998766533 356789999 799999999999999877766555678988
Q ss_pred hhhcccChHHHHHHHhhcccCCc
Q 026033 93 EKFIRMDTKKLCELTSAADSLQL 115 (244)
Q Consensus 93 ~eFl~id~~~L~eLi~AAnyLdI 115 (244)
.+.+++.++|+.|||||++
T Consensus 94 ----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 94 ----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred ----CCCHHHHHHHHHHhhhhcC
Confidence 4899999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.09 E-value=1.6e-05 Score=60.66 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=75.2
Q ss_pred CceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccch
Q 026033 14 KSYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (244)
Q Consensus 14 ~~~I~L~SsDG~~f~V~~~~a~-~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD 92 (244)
...+.|+..||..|.|.+.++. .|+.+++++...+........|+++ +++...+..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 3578999999999999999985 6999999988663222122358888 79999999999999533321 11
Q ss_pred hhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 026033 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALAR 128 (244)
Q Consensus 93 ~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~ 128 (244)
..+.+.+++.+|++|+++.|.+.|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 355688999999999999999999998754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.87 E-value=6.6e-05 Score=74.32 Aligned_cols=106 Identities=10% Similarity=0.058 Sum_probs=83.5
Q ss_pred CceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCC-CCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccc
Q 026033 14 KSYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGS-SKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMF 91 (244)
Q Consensus 14 ~~~I~L~SsDG~~f~V~~~~a~-~S~~I~~~l~~~~~~~-~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~w 91 (244)
-..|+|...+|+.|.+.+.++. .|+.++.|+... +.+ .....|.|. .|+..+|+.|++|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~-~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTP-MIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCC-chhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 3578888888999999999887 799999998642 221 124568898 799999999999987632
Q ss_pred hhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHH
Q 026033 92 DEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 139 (244)
Q Consensus 92 D~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR 139 (244)
++.+.+.+|+.||++|+|+.|.+.||.++...+.-.+-=+|+
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~ 132 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMY 132 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHH
Confidence 234568899999999999999999999998776655544444
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.63 E-value=0.00016 Score=51.71 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=65.6
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccchhhhcccC
Q 026033 21 TTDGSIQQVEEEVAMF-CPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 99 (244)
Q Consensus 21 SsDG~~f~V~~~~a~~-S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~eFl~id 99 (244)
..+|+.|.|.+.++.. |+.++.++...... .....|.++ +++...++.+++||...... ++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~-~~~~~i~l~-~~~~~~f~~~l~~ly~~~~~----------------~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFKE-SKKSEIYLD-DVSPEDFRALLEFLYTGKLD----------------LP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCcc-CCCCEEEec-CCCHHHHHHHHHeecCceee----------------cC
Confidence 4567999999988874 78999987643221 134678898 79999999999999865321 23
Q ss_pred hHHHHHHHhhcccCCcchhHHHHH
Q 026033 100 TKKLCELTSAADSLQLKPLVDLTS 123 (244)
Q Consensus 100 ~~~L~eLi~AAnyLdI~~Lldl~c 123 (244)
...+.+++.+|++++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336789999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.33 E-value=0.0011 Score=64.52 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=74.6
Q ss_pred ceEEEEe-CCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccch
Q 026033 15 SYIWVQT-TDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (244)
Q Consensus 15 ~~I~L~S-sDG~~f~V~~~~a~-~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD 92 (244)
..++|.- .+|+.|.+.+.++. .|+.++.|+...- ....|.|+ . +..+|+.|++|+..-.-
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~----~~~~i~l~-~-~~~~~~~~l~y~Ytg~~------------ 71 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNF----KENEINLN-I-DYDSFNEVIKYIYTGKI------------ 71 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCC----CCceEEec-C-CHHHHHHHHHHhcCCce------------
Confidence 3455654 68999999999987 5899999887532 14668898 5 99999999999876542
Q ss_pred hhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhC
Q 026033 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG 132 (244)
Q Consensus 93 ~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkG 132 (244)
.++.+.+.+|+.||++|+++.|.++|++.+...+.-
T Consensus 72 ----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~ 107 (534)
T PHA03098 72 ----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDD 107 (534)
T ss_pred ----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCH
Confidence 245566889999999999999999998888765543
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=97.20 E-value=0.00078 Score=65.43 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred EEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCccccCC-CCCCHHHHHHHHHHHhhcCCCCCCchhhccchhhh
Q 026033 18 WVQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLP-QRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKF 95 (244)
Q Consensus 18 ~L~SsDG~~f~V~~~~a-~~S~~I~~~l~~~~~~~~~~~~IpLp-~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~eF 95 (244)
.+...-|+.|.+.+.++ ..|+.++.|+... +.++. ..|.+. .+|+..+|+.|++|+..-+-
T Consensus 24 ~~~~~~~~~~~~HR~VLAa~S~YFraMF~~~-~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~l--------------- 86 (480)
T PHA02790 24 TIIEAIGGNIIVNSTILKKLSPYFRTHLRQK-YTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGKV--------------- 86 (480)
T ss_pred eEEEEcCcEEeeehhhhhhcCHHHHHHhcCC-ccccc-cceEEEecCcCHHHHHHHHHhheeeeE---------------
Confidence 34445688999999995 4699999998643 32222 234431 16999999999999844331
Q ss_pred cccChHHHHHHHhhcccCCcchhHHHHHHHHHHHH
Q 026033 96 IRMDTKKLCELTSAADSLQLKPLVDLTSRALARII 130 (244)
Q Consensus 96 l~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~I 130 (244)
.++.+.+.+|+.||++|+|+.+++.||+++...|
T Consensus 87 -~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l 120 (480)
T PHA02790 87 -YIDSHNVVNLLRASILTSVEFIIYTCINFILRDF 120 (480)
T ss_pred -EEecccHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 3445567788888888888888888887775543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.007 Score=60.42 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=74.4
Q ss_pred eEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccchhh
Q 026033 16 YIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEK 94 (244)
Q Consensus 16 ~I~L~SsDG~~f~V~~~~a~-~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~e 94 (244)
.+.|.-.+ +.|...+.++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 38 Dv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i-------------- 100 (571)
T KOG4441|consen 38 DVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL-------------- 100 (571)
T ss_pred eEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE--------------
Confidence 45555555 88998888876 59999999875 3333356779998 6999999999999877663
Q ss_pred hcccChHHHHHHHhhcccCCcchhHHHHHHHHHH
Q 026033 95 FIRMDTKKLCELTSAADSLQLKPLVDLTSRALAR 128 (244)
Q Consensus 95 Fl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~ 128 (244)
.++.+.+-+|+.||++|+|+.+++.||..+..
T Consensus 101 --~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 --EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred --EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35667788999999999999999999988764
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=90.55 E-value=1.5 Score=39.31 Aligned_cols=102 Identities=23% Similarity=0.264 Sum_probs=75.6
Q ss_pred ceEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCC-CCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccch
Q 026033 15 SYIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGM-GSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFD 92 (244)
Q Consensus 15 ~~I~L~SsDG~~f~V~~~~a~-~S~~I~~~l~~~~~-~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD 92 (244)
..|+| ---|.+|.-+...+. +.+.++.|++.... ..+....|=| .-+++-+..|+.|++--..+ +|+
T Consensus 5 ~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe-- 73 (230)
T KOG2716|consen 5 ETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE-- 73 (230)
T ss_pred ceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--
Confidence 34443 345789998888886 57788888775421 2223456777 47999999999999843322 222
Q ss_pred hhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCC
Q 026033 93 EKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGK 133 (244)
Q Consensus 93 ~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGK 133 (244)
+...|-+|+.-|.|..+++|+++|..+++..+.+.
T Consensus 74 ------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 ------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 46678899999999999999999999999998875
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.51 E-value=0.68 Score=40.18 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=29.7
Q ss_pred Hhhccc--CCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 026033 107 TSAADS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (244)
Q Consensus 107 i~AAny--LdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T 149 (244)
..|||. =+|--|.+++|+.. |.-+.+||+.||||+||.
T Consensus 161 ~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 161 AEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 344543 36777888888765 889999999999999874
No 15
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.02 E-value=2 Score=41.63 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=72.1
Q ss_pred CCEEEecHHHHHHcHHHHHHHhhcCCCCCCC---ccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccchhhhcccCh
Q 026033 24 GSIQQVEEEVAMFCPMICREIIQTGMGSSKN---YAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMDT 100 (244)
Q Consensus 24 G~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~---~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~eFl~id~ 100 (244)
|.+.++..--+.||+.+..|....-..+..+ -.||=| +|+...|.-++-=+.+.- +.++.
T Consensus 78 g~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI~l 140 (488)
T KOG4682|consen 78 GFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEIKL 140 (488)
T ss_pred cceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eeccH
Confidence 6677777777778888887766443221111 125555 788888876665433211 35788
Q ss_pred HHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChH
Q 026033 101 KKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEE 151 (244)
Q Consensus 101 ~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~E 151 (244)
+.+..++.||.+|..++|++-|...+...|+-| -+.+++...+-+-.|
T Consensus 141 ~dv~gvlAaA~~lqldgl~qrC~evMie~lspk---ta~~yYea~ckYgle 188 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDGLIQRCGEVMIETLSPK---TACGYYEAACKYGLE 188 (488)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChh---hhhHhhhhhhhhhhH
Confidence 899999999999999999999988776655544 455666555555444
No 16
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=83.65 E-value=0.85 Score=39.46 Aligned_cols=31 Identities=32% Similarity=0.644 Sum_probs=25.5
Q ss_pred CcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 026033 114 QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (244)
Q Consensus 114 dI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T 149 (244)
+|.-|.++.|+.. +..++|||+.||||+|+.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 5666788777665 789999999999999874
No 17
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=71.35 E-value=22 Score=34.86 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=114.7
Q ss_pred CceEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCC--CC------
Q 026033 14 KSYIWVQTTDGSIQQVEEEVA-MFCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPG--RS------ 84 (244)
Q Consensus 14 ~~~I~L~SsDG~~f~V~~~~a-~~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~--~s------ 84 (244)
-..|+++-.| +.|...+-++ ..|..++.+|- .|+.++....|||. .-++..++.+++|+..-+..- -.
T Consensus 44 y~DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld 120 (620)
T KOG4350|consen 44 YSDVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLD 120 (620)
T ss_pred ccceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHH
Confidence 3456776666 6666665544 46999998765 35544456779997 577999999999997765421 00
Q ss_pred -------------chhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChH
Q 026033 85 -------------NKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEE 151 (244)
Q Consensus 85 -------------~~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~E 151 (244)
...++++-.+. +..+.+|-++.||.+.+...|.++||..+ ++...++-.--+.. -++.+
T Consensus 121 ~LslAh~Ygf~~Le~aiSeYl~~i--L~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~ 192 (620)
T KOG4350|consen 121 YLSLAHRYGFIQLETAISEYLKEI--LKNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKD 192 (620)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHH--HcccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHH
Confidence 11223333333 45667889999999999999999999655 67777775432222 24555
Q ss_pred hhhccccc-cCCChHHHHHHHHHHHH-------HHHHHHHhhccccc-hhhhc----cccCChHHhhhhhcCCCCCcc
Q 026033 152 EKLEPLNN-VTDDPRIRLLNRLYARK-------RKELKEREKLKNVE-VEEEH----VDERSVDDLLSFINGGNGGIY 216 (244)
Q Consensus 152 Ee~e~~~~-~~~~p~~~~~n~~~~~~-------~~~~~~~~~~~~~~-~~~~~----~~~~s~~~~~~fi~~~~~~~~ 216 (244)
-.++++.- -|-.|-+..++-+..=. -+++-+..+|--.. .+... +---|-|-||.-|.-.+.++.
T Consensus 193 sL~e~l~RDsFfApE~~IFlAv~~W~~~Nske~~k~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~vrs~s~~ 270 (620)
T KOG4350|consen 193 SLKELLARDSFFAPELKIFLAVRSWHQNNSKEASKVLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIEVRSQSPH 270 (620)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHhcCchhhHHHHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHHhhccCcc
Confidence 55555443 23456666655543322 22333333321111 11111 123467888888887666653
No 18
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=65.39 E-value=11 Score=39.97 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=64.7
Q ss_pred eEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccchhh
Q 026033 16 YIWVQTTDGSIQQVEEEVAM-FCPMICREIIQTGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEK 94 (244)
Q Consensus 16 ~I~L~SsDG~~f~V~~~~a~-~S~~I~~~l~~~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~e 94 (244)
...++.+||+++......+. .+..+..|+....+..+.-.+--.| ++.+.|+-|+.|+.-.-. ..
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~------------~~ 777 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK------------VE 777 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch------------HH
Confidence 34556669998876654443 2444555554333321111111233 679999999999863221 11
Q ss_pred hcc--cChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHH
Q 026033 95 FIR--MDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIR 139 (244)
Q Consensus 95 Fl~--id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR 139 (244)
|++ -..+-+|+++..|+-|=|..|-++|-..+-+.+.=|+..++-
T Consensus 778 ~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~ll 824 (1267)
T KOG0783|consen 778 LFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLL 824 (1267)
T ss_pred HHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHH
Confidence 221 133447888888888888888888777777777766655443
No 19
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=63.58 E-value=13 Score=34.84 Aligned_cols=89 Identities=10% Similarity=0.156 Sum_probs=62.1
Q ss_pred CCEEEecHHHHH-HcHHHHHHHhh---cCCCCCCCccccCCCCCCHHHHHHHHHHHhhcCCCCCCchhhccchhhhcccC
Q 026033 24 GSIQQVEEEVAM-FCPMICREIIQ---TGMGSSKNYAISLPQRVNPAIFGLVLDYCRFHQVPGRSNKERKMFDEKFIRMD 99 (244)
Q Consensus 24 G~~f~V~~~~a~-~S~~I~~~l~~---~~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H~~~~~s~~~l~~wD~eFl~id 99 (244)
-+.|..+.+.+. ..+.++..+.. .+. ...+|+|...-+-.|++=.++|++.. .| .++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~---~~~~idisVhCDv~iF~WLm~yv~~~--~p--------------~l~ 73 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQ---RWEEIDISVHCDVHIFEWLMRYVKGE--PP--------------SLT 73 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccC---cCCCcceEEecChhHHHHHHHHhhcC--CC--------------cCC
Confidence 367888888886 47888887743 221 33456554346677888888887761 11 235
Q ss_pred hHHHHHHHhhcccCCcchhHHHHHHHHHHHHh
Q 026033 100 TKKLCELTSAADSLQLKPLVDLTSRALARIIE 131 (244)
Q Consensus 100 ~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~Ik 131 (244)
.+....++.-|+||+|++|++.|-.++...+.
T Consensus 74 ~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 74 PSNVVSILISSEFLQMESLVEECLQYCHDHMS 105 (317)
T ss_pred cCcEEEeEehhhhhccHHHHHHHHHHHHHhHH
Confidence 56677888999999999999999988865544
No 20
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=61.93 E-value=3.8 Score=30.53 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=52.6
Q ss_pred CCCEEEecHHHHHHc--HHHHHHHhhc--CCCCCCCccccCCCCCCHHHHHHHHHHHhhc-CCCCCCchhhccchhhhcc
Q 026033 23 DGSIQQVEEEVAMFC--PMICREIIQT--GMGSSKNYAISLPQRVNPAIFGLVLDYCRFH-QVPGRSNKERKMFDEKFIR 97 (244)
Q Consensus 23 DG~~f~V~~~~a~~S--~~I~~~l~~~--~~~~~~~~~IpLp~~Vss~iL~kIieyCe~H-~~~~~s~~~l~~wD~eFl~ 97 (244)
-|+.|.++.+.+..- ..+..++... ....+....+=+ +-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 489999999998742 3566665532 111123455666 47999999999999985 2111
Q ss_pred cChHHHHHHHhhcccCCcchh-HHHH
Q 026033 98 MDTKKLCELTSAADSLQLKPL-VDLT 122 (244)
Q Consensus 98 id~~~L~eLi~AAnyLdI~~L-ldl~ 122 (244)
.+...+-.|...|.|.+|+.| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 122345688899999999998 6543
No 21
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.53 E-value=12 Score=32.30 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=30.5
Q ss_pred HHHHHhhcccC--CcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCC
Q 026033 103 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT 149 (244)
Q Consensus 103 L~eLi~AAnyL--dI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T 149 (244)
+..+..|||.- +|-.|..++++. -|.+.++||+.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 44455566654 566666666654 3889999999999999874
No 22
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=46.84 E-value=17 Score=29.63 Aligned_cols=31 Identities=23% Similarity=0.375 Sum_probs=18.0
Q ss_pred HHhCCCHHHHHhhcCCCCCCChHhhhccccc
Q 026033 129 IIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 159 (244)
Q Consensus 129 ~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~ 159 (244)
..+|.|.+|-++++|++...++||..+..+.
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~ 81 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKH 81 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 4568999999999999999999987776554
No 23
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.19 E-value=29 Score=28.40 Aligned_cols=53 Identities=23% Similarity=0.271 Sum_probs=35.7
Q ss_pred hCCCHHHHHhhcCCCCCCChHhhhccccccC-------------CChHHHHHHHHHHHHHHHHHHH
Q 026033 131 EGKTPEEIRETFHLPDDLTEEEKLEPLNNVT-------------DDPRIRLLNRLYARKRKELKER 183 (244)
Q Consensus 131 kGKT~EEIR~~FgI~~D~T~EEe~e~~~~~~-------------~~p~~~~~n~~~~~~~~~~~~~ 183 (244)
-|.|.+|-++++||.+++.+||.++.-...| ...+||.-.||...-.-|++++
T Consensus 54 ~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~~e~~~k 119 (132)
T KOG3442|consen 54 GKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELKIELKEK 119 (132)
T ss_pred ccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999998776544422 1335676666666544444433
No 24
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.85 E-value=32 Score=23.65 Aligned_cols=39 Identities=36% Similarity=0.385 Sum_probs=25.3
Q ss_pred hCCCHHHHHhhcCCCCCCChHhhhccccccCCChHHHHHHHHHHHHHHHHHHH
Q 026033 131 EGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER 183 (244)
Q Consensus 131 kGKT~EEIR~~FgI~~D~T~EEe~e~~~~~~~~p~~~~~n~~~~~~~~~~~~~ 183 (244)
-|-|.+|||+++.+.++- +|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~~--------------~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQG--------------DPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCSH--------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCCC--------------CCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999886641 333344556667777777665
No 25
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=39.30 E-value=50 Score=25.58 Aligned_cols=71 Identities=24% Similarity=0.241 Sum_probs=43.2
Q ss_pred HHHhhcccCCcch-----hHHHHHHHHHHHHh--CCCHHHHHhhcCCCCCCChHhhhccccccCCChHHHHHHHHHHH
Q 026033 105 ELTSAADSLQLKP-----LVDLTSRALARIIE--GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAR 175 (244)
Q Consensus 105 eLi~AAnyLdI~~-----Lldl~c~~vA~~Ik--GKT~EEIR~~FgI~~D~T~EEe~e~~~~~~~~p~~~~~n~~~~~ 175 (244)
.|+.||-..+|++ |+-.++.-.|.++. +++|+++|+..--|.-.|.+=.....+..+.+-+.+.+...+.|
T Consensus 26 al~~a~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~~l~~~v~tPgG~T~~gl~~L~~~~~~~~~~~a~~aa~~R 103 (107)
T PF14748_consen 26 ALADAAVAQGLPREEARKLVAQTFIGAAKLLEESGRSPAELRDEVTTPGGTTIAGLEVLEKGGLRAAIMEALEAAVER 103 (107)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HHHHHHHHS-TTSHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHHHHhhhccCCCCcHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 5566666666654 44444555566666 67999999999999998888666555544444555555554443
No 26
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=33.70 E-value=24 Score=29.84 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=27.6
Q ss_pred HHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCh
Q 026033 105 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150 (244)
Q Consensus 105 eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~ 150 (244)
.|+.||..|++.. .++.|-..+.+++.|||++++.+
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~~~ 165 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTWKS 165 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCeeE
Confidence 3888888888876 24456788999999999865543
No 27
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=31.02 E-value=40 Score=27.25 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=30.9
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHhCC----C--------HHHHHh-hcCCCCC
Q 026033 106 LTSAADSLQLKPLVDLTSRALARIIEGK----T--------PEEIRE-TFHLPDD 147 (244)
Q Consensus 106 Li~AAnyLdI~~Lldl~c~~vA~~IkGK----T--------~EEIR~-~FgI~~D 147 (244)
--.|+....++..+-.+|++||.+|+|. + +.-||. .||....
T Consensus 36 ~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 36 PEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 3478889999999999999999999973 2 444554 7887653
No 28
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=30.78 E-value=2e+02 Score=22.32 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred CceEEEEeCC-CCEEEecHHHHHHcHHHHHHHhhcC--CCCCCCccccCCCCCCHHHHHHHHHHH
Q 026033 14 KSYIWVQTTD-GSIQQVEEEVAMFCPMICREIIQTG--MGSSKNYAISLPQRVNPAIFGLVLDYC 75 (244)
Q Consensus 14 ~~~I~L~SsD-G~~f~V~~~~a~~S~~I~~~l~~~~--~~~~~~~~IpLp~~Vss~iL~kIieyC 75 (244)
+..+.+-..+ .+.|.|+...+. .++++.+|.... +|-..+.+|.|| -+...++.|+..+
T Consensus 38 ~G~~~VyVG~~~~Rfvvp~~~L~-hp~f~~LL~~aeeEfG~~~~G~l~iP--C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 38 KGHFAVYVGEERRRFVVPVSYLN-HPLFQELLEQAEEEFGFDQDGPLTIP--CDVVLFEHLLWLL 99 (100)
T ss_pred CCeEEEEeCccceEEEechHHcC-chhHHHHHHHHhhhcCcCCCCcEEee--CCHHHHHHHHHHh
Confidence 4455555555 899999988775 456666665332 233356789998 8899999888764
No 29
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=30.28 E-value=27 Score=29.18 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=27.1
Q ss_pred HHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCh
Q 026033 106 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 150 (244)
Q Consensus 106 Li~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~ 150 (244)
|+.||.-|++.. .+|.|-..+++++.|||++++.+
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~~ 158 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWRS 158 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeEE
Confidence 888888888775 24567788999999999876533
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=26.84 E-value=59 Score=24.28 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHH-hCC-CHHHHHhhcC----CCCCCChHhhhccccc
Q 026033 116 KPLVDLTSRALARII-EGK-TPEEIRETFH----LPDDLTEEEKLEPLNN 159 (244)
Q Consensus 116 ~~Lldl~c~~vA~~I-kGK-T~EEIR~~Fg----I~~D~T~EEe~e~~~~ 159 (244)
..|+.+-.++.++-= +|. +.+|+|+.+. +-+.+|++|-.++++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~ 59 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMED 59 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 445555555555321 333 8899998883 4555788877766553
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.02 E-value=1.8e+02 Score=28.42 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=73.5
Q ss_pred CCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCc---cccCCCCCCHHHHHHHHHHHhhcCCCCC---------------
Q 026033 22 TDGSIQQVEEEVAMFCPMICREIIQTGMGSSKNY---AISLPQRVNPAIFGLVLDYCRFHQVPGR--------------- 83 (244)
Q Consensus 22 sDG~~f~V~~~~a~~S~~I~~~l~~~~~~~~~~~---~IpLp~~Vss~iL~kIieyCe~H~~~~~--------------- 83 (244)
.......+....+..+...+.|+...-...+.+. ...|| +..+.+.+.+++|+.-|+.+-.
T Consensus 298 ~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 298 PEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLA 376 (516)
T ss_pred cccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhh
Confidence 3334577888888888889988775533322233 35677 7889999999999998887521
Q ss_pred ----------CchhhccchhhhcccChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhC
Q 026033 84 ----------SNKERKMFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEG 132 (244)
Q Consensus 84 ----------s~~~l~~wD~eFl~id~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkG 132 (244)
....+..| .+| +|.-.+++++.-|--+...+|=..+...+|+.+.-
T Consensus 377 l~~dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~ 432 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLLL 432 (516)
T ss_pred hhhhhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 01123445 222 34445788888888888888888888888887654
No 32
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=23.95 E-value=62 Score=26.96 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=26.9
Q ss_pred CCCHHHHHhhcCCCCCCChHhhhccccccCCChHHHHHHHHHHHHHHHHHHH
Q 026033 132 GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER 183 (244)
Q Consensus 132 GKT~EEIR~~FgI~~D~T~EEe~e~~~~~~~~p~~~~~n~~~~~~~~~~~~~ 183 (244)
|.||+|-|+.||++.|+.. . ---|+..|.+|-+.
T Consensus 98 gmTPd~YR~KW~LP~dYPM---------------v---APnYAa~RS~LAK~ 131 (148)
T COG4957 98 GLTPDEYRAKWGLPPDYPM---------------V---APNYAAARSQLAKA 131 (148)
T ss_pred CCCHHHHHHhcCCCCCCCc---------------c---chHHHHHHHHHHHH
Confidence 7899999999999998643 1 14588999998655
No 33
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=22.60 E-value=87 Score=24.90 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.3
Q ss_pred HHhhcccCCcchhHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 026033 106 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIRETFH 143 (244)
Q Consensus 106 Li~AAnyLdI~~Lldl~c-~~vA~~IkGKT~EEIR~~Fg 143 (244)
.|.-+.|-.--.-.-.+| ..++.+++|||.+|...+-.
T Consensus 50 ~I~d~~f~~~GC~~s~Asas~~~e~i~Gktl~ea~~i~~ 88 (124)
T TIGR01999 50 IIEDAKFKTFGCGSAIASSSLATELIKGKSLEEALKIKN 88 (124)
T ss_pred eEEEEEEEecCcHHHHHHHHHHHHHHcCCCHHHHHhccH
Confidence 566666665555555555 56788999999999988754
No 34
>PF15063 TC1: Thyroid cancer protein 1
Probab=22.39 E-value=55 Score=24.56 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCHHHHHhhcCCCCCCChHhhhccccccCCChH
Q 026033 124 RALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPR 165 (244)
Q Consensus 124 ~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~~~~p~ 165 (244)
+.+|+++.+-.-.+|++.|.-..|---||..++.=....||.
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~~~d~e 69 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDKKAEERARIIWECAQDPE 69 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhhCCCHH
Confidence 557889999999999999999999988888887766655654
No 35
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=22.22 E-value=75 Score=19.15 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCHHHHHhhcC
Q 026033 123 SRALARIIEGKTPEEIRETFH 143 (244)
Q Consensus 123 c~~vA~~IkGKT~EEIR~~Fg 143 (244)
-..||..+.++|+.+++..|.
T Consensus 22 w~~Ia~~~~~rs~~~~~~~~~ 42 (45)
T cd00167 22 WEKIAKELPGRTPKQCRERWR 42 (45)
T ss_pred HHHHHhHcCCCCHHHHHHHHH
Confidence 356788888899999988763
No 36
>PF12556 CobS_N: Cobaltochelatase CobS subunit N terminal
Probab=22.00 E-value=51 Score=21.17 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=10.0
Q ss_pred HHhhcCCCCCCC
Q 026033 138 IRETFHLPDDLT 149 (244)
Q Consensus 138 IR~~FgI~~D~T 149 (244)
+|+.|||..|++
T Consensus 14 vre~FGiDsDm~ 25 (36)
T PF12556_consen 14 VREVFGIDSDMK 25 (36)
T ss_pred HHHhcCCCcCCe
Confidence 589999998864
No 37
>PRK13266 Thf1-like protein; Reviewed
Probab=21.97 E-value=1.6e+02 Score=26.40 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=54.8
Q ss_pred ChHHHHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCChHhhhccccccCCChHHHHHHHHHHH
Q 026033 99 DTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYAR 175 (244)
Q Consensus 99 d~~~L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~D~T~EEe~e~~~~~~~~p~~~~~n~~~~~ 175 (244)
+...+|+=++-|.-++-..+-..+ +.+..+++|+++++|...+.-..+-.++.....+..+..+|.|. +.|+||-
T Consensus 72 ~~~~IF~Alc~a~~~dp~~~r~dA-~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~-YSRl~AI 146 (225)
T PRK13266 72 HKDSIFNALCQAVGFDPEQLRQDA-ERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSKFK-YSRLFAI 146 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCCCc-hHHHHHH
Confidence 456799999999989888877554 55566889999999999999776666655555555554555554 6677665
No 38
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=21.80 E-value=1.2e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCC
Q 026033 62 RVNPAIFGLVLDYCRFHQVPG 82 (244)
Q Consensus 62 ~Vss~iL~kIieyCe~H~~~~ 82 (244)
.|+..++..+++||..|..+.
T Consensus 60 ~i~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 60 KINIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred ccchhhHHHHHHHHHHcCCCC
Confidence 378899999999999988763
No 39
>KOG2609 consensus Cyclin D-interacting protein GCIP [Cell cycle control, cell division, chromosome partitioning; RNA processing and modification]
Probab=21.63 E-value=39 Score=30.17 Aligned_cols=60 Identities=27% Similarity=0.372 Sum_probs=43.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHhhccccc-hhhhccccCChHHhhhhhcCCCCCccccccccccccc
Q 026033 160 VTDDPRIRLLNRLYARKRKELKEREKLKNVE-VEEEHVDERSVDDLLSFINGGNGGIYEKYSSFFSASL 227 (244)
Q Consensus 160 ~~~~p~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~fi~~~~~~~~~~~~~~~~~~~ 227 (244)
.+..|.-.++|++-..--++.|+|..-+-.. +.+ |...+|||..++.-+....+|||+-+
T Consensus 155 ~t~k~~~~~idKl~~~L~~q~kkR~k~srRR~~n~--------d~~idfINerN~kFNkKl~R~ysKyT 215 (228)
T KOG2609|consen 155 GTHKPDTEAIDKLVKDLEKQIKKRYKYSRRRMYNE--------DADIDFINERNKKFNKKLERFYSKYT 215 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------ccchhHHHHhHHHHHHHHHHHHhhhh
Confidence 4558888999999888888888886643322 211 33459999999888888888887654
No 40
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=21.36 E-value=1e+02 Score=24.42 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHhhcccCCcchhHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 026033 106 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIRETFH 143 (244)
Q Consensus 106 Li~AAnyLdI~~Lldl~c-~~vA~~IkGKT~EEIR~~Fg 143 (244)
.|.-+.|-.--.-+-.+| ..++.+++|||++|..++..
T Consensus 46 ~I~d~~f~~~GC~is~Asas~~~e~i~Gk~l~ea~~i~~ 84 (121)
T TIGR03419 46 IIKDVKFKTFGCGAAIASSSMATEMIKGKTLEEAWELTN 84 (121)
T ss_pred EEEEEEEEEeccHHHHHHHHHHHHHHcCCCHHHHHHhhh
Confidence 566666666666666665 45688999999999877643
No 41
>PRK11325 scaffold protein; Provisional
Probab=21.32 E-value=94 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=27.3
Q ss_pred HHhhcccCCcchhHHHHH-HHHHHHHhCCCHHHHHhhcC
Q 026033 106 LTSAADSLQLKPLVDLTS-RALARIIEGKTPEEIRETFH 143 (244)
Q Consensus 106 Li~AAnyLdI~~Lldl~c-~~vA~~IkGKT~EEIR~~Fg 143 (244)
.|.-+.|-.--.-.-.+| ..++.+++|||++|.+.+-+
T Consensus 52 ~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~ 90 (127)
T PRK11325 52 IIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKN 90 (127)
T ss_pred eEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCH
Confidence 566666666665666665 45678999999999988644
No 42
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=21.24 E-value=1.2e+02 Score=19.28 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=16.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHhh-cccc
Q 026033 165 RIRLLNRLYAR---KRKELKEREK-LKNV 189 (244)
Q Consensus 165 ~~~~~n~~~~~---~~~~~~~~~~-~~~~ 189 (244)
-|+.||.+|+. -..+|.++++ |+++
T Consensus 5 EI~~Lq~~~a~Gedv~~~LE~Kek~L~n~ 33 (35)
T PF08182_consen 5 EIDVLQIQLADGEDVCKELEQKEKELSNF 33 (35)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 36788888876 3445666655 5554
No 43
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.15 E-value=94 Score=20.13 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=17.2
Q ss_pred HHHHHHHHHh-CCCHHHHHhhc
Q 026033 122 TSRALARIIE-GKTPEEIRETF 142 (244)
Q Consensus 122 ~c~~vA~~Ik-GKT~EEIR~~F 142 (244)
--..||..+. |+|+.++|..|
T Consensus 23 ~W~~Ia~~~~~~Rt~~qc~~~~ 44 (48)
T PF00249_consen 23 NWKKIAKRMPGGRTAKQCRSRY 44 (48)
T ss_dssp HHHHHHHHHSSSSTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHH
Confidence 4567888888 99999998865
No 44
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=21.10 E-value=3.3e+02 Score=22.88 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=40.9
Q ss_pred cChHHHHHHHhhccc--CCcchhHHHHHHHHHHHHhC-CCHHHHHhh---cCCCCCCChHhhhccccccCCChHHHHHHH
Q 026033 98 MDTKKLCELTSAADS--LQLKPLVDLTSRALARIIEG-KTPEEIRET---FHLPDDLTEEEKLEPLNNVTDDPRIRLLNR 171 (244)
Q Consensus 98 id~~~L~eLi~AAny--LdI~~Lldl~c~~vA~~IkG-KT~EEIR~~---FgI~~D~T~EEe~e~~~~~~~~p~~~~~n~ 171 (244)
+|.+.+..|..+|-+ =+++..+..+.-.+..-.+- -+++++..- +|+| ......+-+
T Consensus 22 ~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp-----------------~e~~~~l~~ 84 (174)
T cd04752 22 IDYEKVLKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLP-----------------KEHATSLCR 84 (174)
T ss_pred CCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC-----------------HHHHHHHHH
Confidence 566777788777733 33344444444444333332 355555442 2443 345566789
Q ss_pred HHHHHHHHHHHHhh
Q 026033 172 LYARKRKELKEREK 185 (244)
Q Consensus 172 ~~~~~~~~~~~~~~ 185 (244)
.|..+|.++++.-+
T Consensus 85 ~~~~~~~~l~~~l~ 98 (174)
T cd04752 85 SYEEKQSKLQESLR 98 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 45
>PRK11053 dihydropteridine reductase; Provisional
Probab=20.90 E-value=67 Score=27.48 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.1
Q ss_pred HHHHHhhcccCCcchhHHHHHHHHHHHHhCCCHHHHHhhcCCCC
Q 026033 103 LCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPD 146 (244)
Q Consensus 103 L~eLi~AAnyLdI~~Lldl~c~~vA~~IkGKT~EEIR~~FgI~~ 146 (244)
+..|+.||..|++..- .|.|-.++.+++.|||++
T Consensus 147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~ 180 (217)
T PRK11053 147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLRE 180 (217)
T ss_pred HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCC
Confidence 4467777777776643 445778999999999984
No 46
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.31 E-value=1.3e+02 Score=19.14 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.3
Q ss_pred HHHHHHhCCCHHHHHhhcCCC
Q 026033 125 ALARIIEGKTPEEIRETFHLP 145 (244)
Q Consensus 125 ~vA~~IkGKT~EEIR~~FgI~ 145 (244)
+|.....|.|..++.+.|||.
T Consensus 5 iv~~~~~g~s~~~~a~~~gis 25 (52)
T PF13518_consen 5 IVELYLEGESVREIAREFGIS 25 (52)
T ss_pred HHHHHHcCCCHHHHHHHHCCC
Confidence 455566899999999999994
No 47
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=20.21 E-value=89 Score=19.07 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 026033 124 RALARIIEGKTPEEIRETFH 143 (244)
Q Consensus 124 ~~vA~~IkGKT~EEIR~~Fg 143 (244)
..||..+.++|+.+++..|.
T Consensus 25 ~~Ia~~~~~rt~~~~~~~~~ 44 (49)
T smart00717 25 EKIAKELPGRTAEQCRERWN 44 (49)
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56777788999999988764
Done!