Query 026035
Match_columns 244
No_of_seqs 203 out of 378
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmd_A CGMP dependent protein 91.3 0.43 1.5E-05 34.7 5.6 32 80-111 26-57 (72)
2 3nmd_A CGMP dependent protein 79.9 3.9 0.00013 29.6 5.5 31 80-110 33-63 (72)
3 1lq7_A Alpha3W; three helix bu 69.0 11 0.00038 25.9 5.3 34 77-110 25-64 (67)
4 2oqq_A Transcription factor HY 68.4 8.7 0.0003 24.9 4.4 25 80-104 6-30 (42)
5 1zxa_A CGMP-dependent protein 60.4 19 0.00066 25.5 5.4 34 79-112 17-50 (67)
6 2oqq_A Transcription factor HY 56.6 19 0.00066 23.3 4.4 25 86-110 5-29 (42)
7 3he4_B Synzip5; heterodimeric 55.6 20 0.00067 23.0 4.2 27 78-104 4-30 (46)
8 3a7o_A Autophagy protein 16; c 54.0 23 0.00078 25.5 4.9 30 81-110 19-48 (75)
9 3he4_B Synzip5; heterodimeric 46.4 55 0.0019 20.9 5.7 23 87-109 6-28 (46)
10 1zxa_A CGMP-dependent protein 45.9 22 0.00077 25.2 3.8 23 85-107 16-38 (67)
11 4egx_A Kinesin-like protein KI 45.0 32 0.0011 28.4 5.3 25 92-116 28-52 (184)
12 2qdq_A Talin-1; dimerisation d 41.2 44 0.0015 22.4 4.4 21 85-105 13-33 (50)
13 2b5u_A Colicin E3; high resolu 37.8 39 0.0013 32.7 5.2 20 77-96 291-310 (551)
14 2do5_A Splicing factor 3B subu 36.4 53 0.0018 22.2 4.2 25 99-123 31-55 (58)
15 3he5_B Synzip2; heterodimeric 36.1 77 0.0026 20.7 4.9 10 88-97 21-30 (52)
16 2js5_A Uncharacterized protein 33.4 80 0.0027 22.6 5.1 16 131-146 27-42 (71)
17 3qh9_A Liprin-beta-2; coiled-c 31.6 35 0.0012 25.1 2.9 18 88-105 55-72 (81)
18 2lw1_A ABC transporter ATP-bin 31.4 71 0.0024 23.0 4.7 28 84-111 19-46 (89)
19 2yy0_A C-MYC-binding protein; 30.8 82 0.0028 21.0 4.5 27 80-106 22-48 (53)
20 3t97_B Nuclear pore complex pr 30.0 81 0.0028 22.2 4.5 27 80-106 20-46 (65)
21 1g6u_A Domain swapped dimer; d 30.0 91 0.0031 20.0 4.4 19 87-105 20-38 (48)
22 2pnv_A Small conductance calci 29.0 87 0.003 20.2 4.2 25 80-104 12-36 (43)
23 2q2f_A Selenoprotein S; anti-p 28.0 1.3E+02 0.0044 22.4 5.5 22 82-103 53-74 (89)
24 3p01_A Two-component response 27.6 42 0.0014 25.7 3.1 12 230-241 132-143 (184)
25 3a7o_A Autophagy protein 16; c 27.5 1.3E+02 0.0045 21.5 5.3 26 80-105 25-50 (75)
26 1y66_A Engrailed homeodomain; 26.9 45 0.0016 21.8 2.6 16 88-103 7-22 (52)
27 1t6f_A Geminin; coiled-coil, c 25.5 1.2E+02 0.0041 18.9 4.2 18 81-98 8-25 (37)
28 3nr7_A DNA-binding protein H-N 24.5 1.4E+02 0.0048 21.8 5.2 26 91-116 49-74 (86)
29 2f95_B Sensory rhodopsin II tr 23.2 17 0.00059 27.4 0.0 8 117-124 156-163 (163)
30 1q08_A Zn(II)-responsive regul 22.7 1E+02 0.0035 21.8 4.2 26 81-106 43-68 (99)
31 2v4h_A NF-kappa-B essential mo 20.4 1.8E+02 0.0062 22.4 5.3 26 82-107 33-58 (110)
32 3p01_A Two-component response 20.4 89 0.003 23.8 3.7 20 78-97 11-30 (184)
No 1
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.28 E-value=0.43 Score=34.67 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAAA 111 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~ 111 (244)
..|++|.+||..|++.++++|.+|..++..++
T Consensus 26 ~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 26 YALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777665543
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.88 E-value=3.9 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
+++..|++.++.+|.+|+.+|.+++....++
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665544444
No 3
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=69.00 E-value=11 Score=25.89 Aligned_cols=34 Identities=38% Similarity=0.526 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 026035 77 DTAADLKKKEKELQAKEAEL------RRREQDVRRKEEAA 110 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL------~rRE~eL~~re~~~ 110 (244)
++-++|+++=+||.+|-+|| ++-|+|.+..|+++
T Consensus 25 grieelkkkweelkkkieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 25 GRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45678999999999998887 56777777777655
No 4
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.42 E-value=8.7 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
.||+.|.++|+.|-+||+.|-.-|+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888887766555
No 5
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=60.41 E-value=19 Score=25.53 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026035 79 AADLKKKEKELQAKEAELRRREQDVRRKEEAAAR 112 (244)
Q Consensus 79 ~~~l~~k~~EL~rke~EL~rRE~eL~~re~~~~~ 112 (244)
.+.+..|++.....|.+|+.+++++++....+.+
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777788888888887775554443
No 6
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=56.61 E-value=19 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 86 EKELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 86 ~~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
-.||+.|+.+|+.|-.||..|-.-+
T Consensus 5 l~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888999988888888775444
No 7
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.57 E-value=20 Score=23.01 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 78 TAADLKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
+.++|+.--+||+.|.+||+...+.|+
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 345777777788888888876544453
No 8
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.97 E-value=23 Score=25.52 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 81 DLKKKEKELQAKEAELRRREQDVRRKEEAA 110 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~re~~~ 110 (244)
.+..-++||..||+|+.+.++.++-+....
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ 48 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNT 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 355667788888888887777665554333
No 9
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.36 E-value=55 Score=20.89 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026035 87 KELQAKEAELRRREQDVRRKEEA 109 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~re~~ 109 (244)
+||+.--+||++|.+||++..+.
T Consensus 6 kelknyiqeleernaelknlkeh 28 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEH 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHH
Confidence 46666667777777777664443
No 10
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=45.91 E-value=22 Score=25.17 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026035 85 KEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~eL~~re 107 (244)
.++.|..|++.+++.|.+|..+.
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd 38 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKE 38 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 11
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=45.01 E-value=32 Score=28.39 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC
Q 026035 92 KEAELRRREQDVRRKEEAAARAGIV 116 (244)
Q Consensus 92 ke~EL~rRE~eL~~re~~~~~~g~~ 116 (244)
||+.|++-|+..+.|+.++++.|+.
T Consensus 28 WeeKl~~te~~~~e~~~~l~~~gi~ 52 (184)
T 4egx_A 28 WEEKLRRTEAIRMEREALLAEMGVA 52 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4455544444445577777777754
No 12
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=41.20 E-value=44 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026035 85 KEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 85 k~~EL~rke~EL~rRE~eL~~ 105 (244)
.++++-|+|.||+.-.+.|..
T Consensus 13 Aqe~iLr~ErELEeAr~~La~ 33 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQ 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666654444543
No 13
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=37.76 E-value=39 Score=32.68 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 026035 77 DTAADLKKKEKELQAKEAEL 96 (244)
Q Consensus 77 ~~~~~l~~k~~EL~rke~EL 96 (244)
-+..++++||||-+|+++|-
T Consensus 291 lt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 291 LSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 35578888888888888876
No 14
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.42 E-value=53 Score=22.21 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCcCCCC
Q 026035 99 REQDVRRKEEAAARAGIVLEEKNWP 123 (244)
Q Consensus 99 RE~eL~~re~~~~~~g~~~~~~NwP 123 (244)
||+-+.|.+--..+.|....++|-|
T Consensus 31 REElvdRLk~Y~~QtGi~lnkP~~~ 55 (58)
T 2do5_A 31 REELVERLQSYTRQTGIVLNRPSGP 55 (58)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCTTCS
T ss_pred HHHHHHHHHHHhhccceeecCCCCC
Confidence 4444444444444567655455544
No 15
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.09 E-value=77 Score=20.67 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 026035 88 ELQAKEAELR 97 (244)
Q Consensus 88 EL~rke~EL~ 97 (244)
.|+|-|+.|+
T Consensus 21 qlerdeqnle 30 (52)
T 3he5_B 21 QLERDEQNLE 30 (52)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhHhhHH
Confidence 4444444443
No 16
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=33.44 E-value=80 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=8.3
Q ss_pred cccccchhHhHHHHHH
Q 026035 131 HDIANEIPIHLQRLQY 146 (244)
Q Consensus 131 ~dI~~EIP~~~q~~v~ 146 (244)
||+++|+|...+++.-
T Consensus 27 HDLaEdLP~~w~~i~~ 42 (71)
T 2js5_A 27 HDLAEDLPTGWNRIME 42 (71)
T ss_dssp HHHHHSTTTSGGGHHH
T ss_pred HHHhccchhhHHHHHH
Confidence 5555555555554443
No 17
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=31.59 E-value=35 Score=25.10 Aligned_cols=18 Identities=11% Similarity=0.398 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026035 88 ELQAKEAELRRREQDVRR 105 (244)
Q Consensus 88 EL~rke~EL~rRE~eL~~ 105 (244)
||....+.|+.++.|+++
T Consensus 55 El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 55 EVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 333334444444444443
No 18
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.43 E-value=71 Score=23.03 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 84 KKEKELQAKEAELRRREQDVRRKEEAAA 111 (244)
Q Consensus 84 ~k~~EL~rke~EL~rRE~eL~~re~~~~ 111 (244)
+-++||+..++++.+.|+++...+..++
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566888888888888888887776654
No 19
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.77 E-value=82 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~r 106 (244)
+.|++.-+||++|-++|.++-+||++|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777777654
No 20
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.04 E-value=81 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVRRK 106 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~r 106 (244)
.||+++......|-+|.+||-.||..|
T Consensus 20 ~eLq~~~~~~~aki~e~krkl~eLsHR 46 (65)
T 3t97_B 20 SELQKNQTTTMAKIAQYKRKLMDLSHR 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 466777766667777777777777654
No 21
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.00 E-value=91 Score=20.02 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026035 87 KELQAKEAELRRREQDVRR 105 (244)
Q Consensus 87 ~EL~rke~EL~rRE~eL~~ 105 (244)
+||.+.|.||+..|+.|..
T Consensus 20 eelaaleselqalekklaa 38 (48)
T 1g6u_A 20 EELAALESELQALEKKLAA 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666665544
No 22
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.03 E-value=87 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.363 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVR 104 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~ 104 (244)
.|+..++++|++|-.-|+.|=..|.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4677777887776666655544443
No 23
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=27.97 E-value=1.3e+02 Score=22.36 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026035 82 LKKKEKELQAKEAELRRREQDV 103 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL 103 (244)
-.+.|+||++++++-+.+.++|
T Consensus 53 RlRMQEeldAqAe~~keKQkql 74 (89)
T 2q2f_A 53 RLKMQEELNAQVEKHKEKLKQL 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888777776655444
No 24
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=27.62 E-value=42 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.0
Q ss_pred hhccCCccccCc
Q 026035 230 ASVAPPIIFKGK 241 (244)
Q Consensus 230 ~aiG~p~~f~g~ 241 (244)
..+++|+..+|+
T Consensus 132 s~l~vPL~~~~~ 143 (184)
T 3p01_A 132 SHVVIPITYRNE 143 (184)
T ss_dssp EEEEEEEEETTE
T ss_pred EEEEEEEEECCE
Confidence 345666666664
No 25
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.54 E-value=1.3e+02 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 80 ADLKKKEKELQAKEAELRRREQDVRR 105 (244)
Q Consensus 80 ~~l~~k~~EL~rke~EL~rRE~eL~~ 105 (244)
++|..|+.|..+.++.+.-|-++..+
T Consensus 25 ~eL~~Ke~eI~~L~e~i~lk~kd~Er 50 (75)
T 3a7o_A 25 KELKSKEQEIRRLKEVIALKNKNTER 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34555555555555555444444443
No 26
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=26.93 E-value=45 Score=21.79 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026035 88 ELQAKEAELRRREQDV 103 (244)
Q Consensus 88 EL~rke~EL~rRE~eL 103 (244)
|.+||-.|..||-+|+
T Consensus 7 everklkefvrrhqei 22 (52)
T 1y66_A 7 EVERKLKEFVRRHQEI 22 (52)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 27
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=25.48 E-value=1.2e+02 Score=18.90 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026035 81 DLKKKEKELQAKEAELRR 98 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~r 98 (244)
+-.+-.++++.|.+|+.+
T Consensus 8 ENekLhk~ie~KdeeIa~ 25 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIAR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566677777777766
No 28
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.52 E-value=1.4e+02 Score=21.81 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC
Q 026035 91 AKEAELRRREQDVRRKEEAAARAGIV 116 (244)
Q Consensus 91 rke~EL~rRE~eL~~re~~~~~~g~~ 116 (244)
+.+++.+.|++.++.--+.+...|+.
T Consensus 49 ~~~~~~~er~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 49 AAAAEVEERTRKLQQYREMLIADGID 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33444444555554432345555653
No 29
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=23.24 E-value=17 Score=27.38 Aligned_cols=8 Identities=0% Similarity=-0.101 Sum_probs=0.0
Q ss_pred CCcCCCCC
Q 026035 117 LEEKNWPP 124 (244)
Q Consensus 117 ~~~~NwPp 124 (244)
+.++..||
T Consensus 156 ~~~~~~~~ 163 (163)
T 2f95_B 156 SHHHHHHH 163 (163)
T ss_dssp --------
T ss_pred CCccccCC
Confidence 34444544
No 30
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=22.67 E-value=1e+02 Score=21.80 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 81 DLKKKEKELQAKEAELRRREQDVRRK 106 (244)
Q Consensus 81 ~l~~k~~EL~rke~EL~rRE~eL~~r 106 (244)
-|.++.++|+++-++|++..+.|...
T Consensus 43 ~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 43 IVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777666666553
No 31
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.38 E-value=1.8e+02 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026035 82 LKKKEKELQAKEAELRRREQDVRRKE 107 (244)
Q Consensus 82 l~~k~~EL~rke~EL~rRE~eL~~re 107 (244)
|...++-|..|..++++.++++.+++
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666555555444
No 32
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=20.36 E-value=89 Score=23.80 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 026035 78 TAADLKKKEKELQAKEAELR 97 (244)
Q Consensus 78 ~~~~l~~k~~EL~rke~EL~ 97 (244)
.-++++++.+||++++++++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~ 30 (184)
T 3p01_A 11 TYDLLKQRTEELRRANAQMS 30 (184)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555543
Done!