BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026036
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 24/143 (16%)
Query: 51 HQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110
H L + +W G + A+ L E I + ELG+G G ++I A + +DY D
Sbjct: 53 HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD 112
Query: 111 QEI----EDNI----AYNSTTNGITPALPH-IKHSWGDAFPIPNPD----------WDLI 151
EI E NI A + ++ + A P + + WGD +PD + ++
Sbjct: 113 PEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGD-----SPDSLQRCTGLQRFQVV 167
Query: 152 LASDILLYVKQYSNLIKSLSVLL 174
L +D+L + + + L++S+ LL
Sbjct: 168 LLADLLSFHQAHDALLRSVKXLL 190
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 72 HREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE---DNIAYNSTTNGITP 128
+R I CI++GSG GAL+I L K + I D++ E NIA + +
Sbjct: 38 NRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLND---- 93
Query: 129 ALPHIKHSWGDAFPIPNPD--WDLILASDILLYVKQYSNLIKSLSVLLKS 176
I+ GD IP D DLI++ + + + + + + +LKS
Sbjct: 94 ---RIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKS 140
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98
T ++ + H+R + + +++GSGTG L +F KA
Sbjct: 42 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA 78
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98
T ++ + H+R + + +++GSGTG L +F KA
Sbjct: 45 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA 81
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98
T ++ + H+R + + +++GSGTG L +F KA
Sbjct: 55 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA 91
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98
T ++ + H+R + + +++GSGTG L +F KA
Sbjct: 51 TLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKA 87
>pdb|1EE8|A Chain A, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
pdb|1EE8|B Chain B, Crystal Structure Of Mutm (Fpg) Protein From Thermus
Thermophilus Hb8
Length = 266
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 175 KSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 228
+SY+ D G G EGLP PA RR+ T F +C+ G
Sbjct: 212 QSYRQPDGLPGGFQTRHAVYGREGLPCPACGRPVERRVVAGRGTHFCPTCQGEG 265
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 19/117 (16%)
Query: 67 EWLMHHR-------EWIERR-RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118
+W ++HR E+++ R ++LG GTG ++FL++ ++ D + + +E +A
Sbjct: 36 KWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEXLE--VA 92
Query: 119 YNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA-SDILLYVKQYSNLIKSLSVLL 174
+ A + P P+ ++ +LA D+L YV+ + +L
Sbjct: 93 REKGVKNVVEAK-------AEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVL 142
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 126 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 178
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 179 PKDSQVG 185
D + G
Sbjct: 476 DSDKRGG 482
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 126 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 178
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 179 PKDSQVG 185
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 126 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 178
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 179 PKDSQVG 185
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 126 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 178
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 179 PKDSQVG 185
D + G
Sbjct: 476 DSDKRGG 482
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 126 ITPALPHIKHSWGDAFPIPNPDWDLI-------LASDILLYVKQYSNLIKSLSVLLKSYK 178
+ P +P + W D P+P+ D+DLI L +IL S L+K+ +Y+
Sbjct: 418 LGPEVPDEEMIWQD--PLPDADYDLIGDEEIAELKEEILDSDLSVSQLVKTAWASASTYR 475
Query: 179 PKDSQVG 185
D + G
Sbjct: 476 DSDKRGG 482
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 109 NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDLILASDILLYVKQYS 164
+ +E + +A + T N PA + S G + + N D L+ ++LLYV+++
Sbjct: 114 DQREAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLL---EVLLYVEEFD 170
Query: 165 NLIKSLSVLLKSYKPKDSQVGHLTK 189
+ + LLK++K + S + ++ K
Sbjct: 171 ASLLTPFPLLKAFKSRISSLPNVKK 195
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 109 NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDLILASDILLYVKQYS 164
+ +E + +A + T N PA + S G + + N D L+ ++LLYV+++
Sbjct: 114 DQREAKTALAKDRTKNRYLPAFEKVLKSHGQDYLVGNRLTRVDIHLL---EVLLYVEEFD 170
Query: 165 NLIKSLSVLLKSYKPKDSQVGHLTK 189
+ + LLK++K + S + ++ K
Sbjct: 171 ASLLTPFPLLKAFKSRISSLPNVKK 195
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFL 205
PDW + + +I K S ++ LLK+Y S V +T+NE G W + +
Sbjct: 423 PDWSAVASDEITGVEKDISAALQVNCALLKAYGLP-SSVKIVTENEVILGNCDDFWVSVI 481
Query: 206 MSWRRRIGKEDETIFFTSCENAGLEVKHL 234
R+ + E ++ NAG + L
Sbjct: 482 GIARKNLLSHVEELYGGEVRNAGQVIAAL 510
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFL 205
PDW + + +I K S ++ LLK+Y S V +T+NE G W + +
Sbjct: 423 PDWSAVASDEITGVEKDISAALQVNCALLKAYGLP-SSVKIVTENEVILGNCDDFWVSVI 481
Query: 206 MSWRRRIGKEDETIFFTSCENAGLEVKHL 234
R+ + E ++ NAG + L
Sbjct: 482 GIARKNLLSHVEELYGGEVRNAGQVIAAL 510
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,479,707
Number of Sequences: 62578
Number of extensions: 310738
Number of successful extensions: 724
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)