Query 026036
Match_columns 244
No_of_seqs 239 out of 2693
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:57:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.9 7.1E-24 1.5E-28 163.2 12.9 158 41-227 4-173 (173)
2 PF01209 Ubie_methyltran: ubiE 99.8 1.4E-19 3E-24 145.4 8.3 158 74-239 44-223 (233)
3 COG2226 UbiE Methylase involve 99.8 1.3E-18 2.9E-23 138.6 12.8 158 73-238 47-226 (238)
4 COG4123 Predicted O-methyltran 99.8 2.5E-18 5.4E-23 137.0 13.5 162 40-235 15-193 (248)
5 PTZ00098 phosphoethanolamine N 99.8 1.4E-18 2.9E-23 142.7 12.0 171 56-236 31-202 (263)
6 PLN02244 tocopherol O-methyltr 99.8 1.2E-17 2.6E-22 141.9 17.1 167 63-236 99-278 (340)
7 TIGR00452 methyltransferase, p 99.8 4.9E-18 1.1E-22 141.6 14.2 198 25-235 75-272 (314)
8 PF02353 CMAS: Mycolic acid cy 99.8 3.1E-18 6.8E-23 140.5 10.2 168 61-236 46-217 (273)
9 PLN02396 hexaprenyldihydroxybe 99.8 5.3E-18 1.1E-22 142.0 10.9 159 76-240 130-293 (322)
10 COG2230 Cfa Cyclopropane fatty 99.8 1.9E-17 4.2E-22 134.3 13.6 164 62-236 57-223 (283)
11 PRK15068 tRNA mo(5)U34 methylt 99.7 3.8E-17 8.2E-22 137.6 15.1 171 58-236 104-274 (322)
12 PF12847 Methyltransf_18: Meth 99.7 1.2E-17 2.5E-22 119.6 10.3 108 77-186 1-110 (112)
13 PF05175 MTS: Methyltransferas 99.7 3.1E-17 6.7E-22 126.2 13.0 119 60-186 18-139 (170)
14 TIGR00537 hemK_rel_arch HemK-r 99.7 1.5E-16 3.3E-21 123.4 15.9 145 61-240 7-169 (179)
15 PRK11036 putative S-adenosyl-L 99.7 3.5E-17 7.6E-22 134.0 12.9 154 77-236 44-207 (255)
16 COG2264 PrmA Ribosomal protein 99.7 1.2E-16 2.6E-21 130.7 15.0 143 60-238 147-290 (300)
17 PLN02233 ubiquinone biosynthes 99.7 1.5E-16 3.2E-21 130.5 15.1 157 73-236 69-248 (261)
18 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.7E-17 5.9E-22 129.1 9.5 155 76-240 58-219 (243)
19 PRK14966 unknown domain/N5-glu 99.7 1.1E-16 2.5E-21 136.6 13.6 201 2-234 173-403 (423)
20 KOG3201 Uncharacterized conser 99.7 9.8E-18 2.1E-22 122.8 5.6 156 52-234 4-164 (201)
21 PF06325 PrmA: Ribosomal prote 99.7 3.8E-16 8.2E-21 128.9 14.6 139 60-237 146-284 (295)
22 PLN02336 phosphoethanolamine N 99.7 2.1E-16 4.5E-21 140.5 13.9 166 60-236 249-414 (475)
23 PF08003 Methyltransf_9: Prote 99.7 4.4E-16 9.6E-21 126.5 14.2 166 59-235 98-266 (315)
24 PRK11207 tellurite resistance 99.7 1.3E-15 2.8E-20 119.9 16.4 106 75-186 28-133 (197)
25 PRK00107 gidB 16S rRNA methylt 99.7 2.4E-15 5.2E-20 116.9 15.9 123 77-235 45-168 (187)
26 PRK01544 bifunctional N5-gluta 99.7 2.1E-16 4.5E-21 140.4 10.9 204 2-234 34-291 (506)
27 PRK15001 SAM-dependent 23S rib 99.7 2.1E-15 4.5E-20 128.6 15.6 117 68-186 219-339 (378)
28 PF08241 Methyltransf_11: Meth 99.7 3.2E-16 7E-21 108.3 8.7 95 82-185 1-95 (95)
29 COG3897 Predicted methyltransf 99.7 1.4E-16 3E-21 120.6 7.0 130 45-185 47-176 (218)
30 KOG1270 Methyltransferases [Co 99.7 2.6E-16 5.5E-21 124.5 8.4 158 77-240 89-253 (282)
31 PRK11873 arsM arsenite S-adeno 99.7 1.2E-15 2.5E-20 126.2 12.8 154 74-235 74-229 (272)
32 PRK14103 trans-aconitate 2-met 99.7 4E-15 8.7E-20 121.8 15.4 149 73-235 25-183 (255)
33 PF13489 Methyltransf_23: Meth 99.7 7.7E-17 1.7E-21 122.5 4.8 137 75-233 20-160 (161)
34 PRK14968 putative methyltransf 99.7 7.9E-15 1.7E-19 114.4 16.2 150 58-239 8-176 (188)
35 PRK00517 prmA ribosomal protei 99.7 1.1E-14 2.4E-19 118.8 17.7 138 58-237 102-239 (250)
36 TIGR00477 tehB tellurite resis 99.7 1.9E-15 4.1E-20 118.7 12.6 105 75-186 28-132 (195)
37 smart00828 PKS_MT Methyltransf 99.7 5.1E-15 1.1E-19 118.9 15.2 143 79-236 1-144 (224)
38 PRK11705 cyclopropane fatty ac 99.7 6.2E-15 1.3E-19 126.9 16.5 156 67-236 157-312 (383)
39 TIGR00406 prmA ribosomal prote 99.7 6.8E-15 1.5E-19 122.4 16.2 143 58-237 142-284 (288)
40 TIGR03533 L3_gln_methyl protei 99.7 1.3E-15 2.9E-20 126.2 11.8 181 2-186 39-250 (284)
41 TIGR02752 MenG_heptapren 2-hep 99.6 1.9E-15 4.1E-20 121.9 12.3 111 72-188 40-152 (231)
42 PRK14967 putative methyltransf 99.6 1.1E-14 2.5E-19 116.8 16.5 120 61-186 21-158 (223)
43 TIGR00536 hemK_fam HemK family 99.6 1.3E-15 2.8E-20 126.5 11.2 181 2-186 33-243 (284)
44 KOG1540 Ubiquinone biosynthesi 99.6 8.6E-15 1.9E-19 115.3 14.6 160 73-239 96-285 (296)
45 PF13847 Methyltransf_31: Meth 99.6 1.9E-15 4.2E-20 114.1 10.7 106 77-189 3-112 (152)
46 PRK08287 cobalt-precorrin-6Y C 99.6 1.5E-14 3.2E-19 113.0 15.7 136 62-232 16-152 (187)
47 PLN02490 MPBQ/MSBQ methyltrans 99.6 8.9E-15 1.9E-19 123.1 14.8 155 63-235 98-255 (340)
48 COG2890 HemK Methylase of poly 99.6 2.5E-14 5.5E-19 118.0 16.7 192 7-231 36-258 (280)
49 PRK10258 biotin biosynthesis p 99.6 4.9E-15 1.1E-19 121.0 11.9 153 65-232 30-183 (251)
50 PRK09489 rsmC 16S ribosomal RN 99.6 8.8E-15 1.9E-19 123.9 13.5 104 77-186 196-302 (342)
51 COG2813 RsmC 16S RNA G1207 met 99.6 1.5E-14 3.4E-19 117.7 14.2 115 67-186 148-265 (300)
52 TIGR00138 gidB 16S rRNA methyl 99.6 1.7E-14 3.8E-19 111.8 13.8 99 77-186 42-141 (181)
53 TIGR02021 BchM-ChlM magnesium 99.6 7.6E-15 1.7E-19 117.5 12.0 152 75-238 53-208 (219)
54 PF07021 MetW: Methionine bios 99.6 1.4E-14 3.1E-19 110.7 12.6 149 63-234 5-165 (193)
55 PRK11805 N5-glutamine S-adenos 99.6 2E-15 4.3E-20 126.3 8.5 181 2-186 51-262 (307)
56 PRK08317 hypothetical protein; 99.6 2.5E-14 5.5E-19 115.6 14.7 171 59-239 1-179 (241)
57 TIGR03704 PrmC_rel_meth putati 99.6 4.9E-14 1.1E-18 114.8 16.3 150 59-238 67-242 (251)
58 PRK04266 fibrillarin; Provisio 99.6 7.4E-14 1.6E-18 111.7 16.9 150 61-236 58-210 (226)
59 PRK00377 cbiT cobalt-precorrin 99.6 4.4E-14 9.6E-19 111.3 15.2 132 70-232 33-166 (198)
60 TIGR02469 CbiT precorrin-6Y C5 99.6 5.4E-14 1.2E-18 102.1 14.3 115 64-186 6-121 (124)
61 PRK09328 N5-glutamine S-adenos 99.6 1E-14 2.2E-19 120.7 11.5 150 56-234 87-260 (275)
62 PRK12335 tellurite resistance 99.6 2.5E-14 5.3E-19 119.1 12.7 103 77-186 120-222 (287)
63 PRK05134 bifunctional 3-demeth 99.6 3.5E-14 7.7E-19 114.7 13.3 166 64-239 35-208 (233)
64 PRK01683 trans-aconitate 2-met 99.6 1E-13 2.2E-18 113.7 15.4 111 66-188 20-131 (258)
65 PRK00121 trmB tRNA (guanine-N( 99.6 1.4E-14 3.1E-19 114.4 9.5 130 77-232 40-177 (202)
66 PRK15451 tRNA cmo(5)U34 methyl 99.6 3E-14 6.5E-19 116.0 11.7 106 77-187 56-164 (247)
67 PF13659 Methyltransf_26: Meth 99.6 9.5E-15 2.1E-19 105.3 7.7 109 78-187 1-115 (117)
68 TIGR02716 C20_methyl_CrtF C-20 99.6 1.1E-13 2.4E-18 116.3 15.2 159 67-234 139-304 (306)
69 PRK00216 ubiE ubiquinone/menaq 99.6 1.7E-13 3.7E-18 110.8 15.5 108 75-187 49-158 (239)
70 PF13649 Methyltransf_25: Meth 99.5 1.2E-14 2.7E-19 102.0 6.7 97 81-181 1-101 (101)
71 TIGR03534 RF_mod_PrmC protein- 99.5 3.3E-13 7.2E-18 110.1 15.7 149 56-234 67-239 (251)
72 PF08242 Methyltransf_12: Meth 99.5 1.5E-15 3.2E-20 106.3 1.5 97 82-183 1-99 (99)
73 TIGR01983 UbiG ubiquinone bios 99.5 1.6E-13 3.4E-18 110.2 13.0 156 76-240 44-207 (224)
74 PLN02585 magnesium protoporphy 99.5 1.3E-13 2.9E-18 115.2 13.0 148 77-235 144-298 (315)
75 PRK13944 protein-L-isoaspartat 99.5 2.4E-13 5.3E-18 107.6 13.4 114 62-186 57-172 (205)
76 COG2263 Predicted RNA methylas 99.5 9.7E-13 2.1E-17 99.7 15.5 167 33-243 9-175 (198)
77 TIGR00740 methyltransferase, p 99.5 1.9E-13 4.2E-18 110.8 12.5 106 77-187 53-161 (239)
78 TIGR01177 conserved hypothetic 99.5 5.4E-13 1.2E-17 113.1 15.5 119 63-186 168-293 (329)
79 PRK06202 hypothetical protein; 99.5 3.1E-13 6.8E-18 109.1 13.4 148 76-238 59-224 (232)
80 PRK07580 Mg-protoporphyrin IX 99.5 3E-13 6.4E-18 109.0 13.2 151 76-236 62-214 (230)
81 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.1E-13 1.3E-17 106.5 14.3 106 75-188 37-144 (223)
82 PF03848 TehB: Tellurite resis 99.5 1.4E-13 3E-18 106.5 9.9 107 75-188 28-134 (192)
83 COG2242 CobL Precorrin-6B meth 99.5 1.8E-12 3.8E-17 98.6 15.4 139 63-235 20-160 (187)
84 PF06080 DUF938: Protein of un 99.5 5.1E-13 1.1E-17 103.6 12.2 153 80-236 28-192 (204)
85 PLN02336 phosphoethanolamine N 99.5 6.2E-13 1.3E-17 118.3 14.0 146 73-233 33-179 (475)
86 COG4976 Predicted methyltransf 99.5 4.7E-14 1E-18 109.5 5.5 141 78-238 126-267 (287)
87 PRK07402 precorrin-6B methylas 99.5 1.2E-12 2.7E-17 102.9 13.6 116 62-186 25-141 (196)
88 KOG4300 Predicted methyltransf 99.5 1.3E-13 2.8E-18 105.4 7.5 107 79-190 78-185 (252)
89 TIGR03587 Pse_Me-ase pseudamin 99.5 3E-12 6.5E-17 101.1 15.4 99 76-186 42-141 (204)
90 TIGR02072 BioC biotin biosynth 99.5 7.4E-13 1.6E-17 107.1 11.9 102 77-188 34-136 (240)
91 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.2E-12 4.7E-17 102.5 13.6 125 62-189 20-154 (213)
92 PF05401 NodS: Nodulation prot 99.5 3.9E-13 8.4E-18 103.1 8.9 103 77-186 43-145 (201)
93 TIGR00080 pimt protein-L-isoas 99.5 1.5E-12 3.3E-17 103.9 12.7 114 62-187 62-177 (215)
94 PLN02672 methionine S-methyltr 99.4 3.6E-12 7.8E-17 120.5 16.9 154 56-236 96-303 (1082)
95 KOG1271 Methyltransferases [Ge 99.4 1.3E-12 2.9E-17 98.0 11.2 145 61-233 47-202 (227)
96 PRK06922 hypothetical protein; 99.4 8.9E-13 1.9E-17 117.9 12.2 109 75-187 416-537 (677)
97 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.5E-12 5.3E-17 113.3 14.8 116 61-186 281-399 (443)
98 PRK13942 protein-L-isoaspartat 99.4 2.3E-12 4.9E-17 102.6 12.7 112 61-186 60-175 (212)
99 smart00138 MeTrc Methyltransfe 99.4 9.2E-13 2E-17 108.1 10.6 108 77-186 99-241 (264)
100 PRK05785 hypothetical protein; 99.4 1.3E-12 2.8E-17 104.9 10.2 90 77-180 51-140 (226)
101 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.5E-12 5.4E-17 118.9 13.3 134 77-236 538-680 (702)
102 PHA03411 putative methyltransf 99.4 7.2E-12 1.6E-16 101.6 13.7 145 55-232 46-210 (279)
103 KOG2904 Predicted methyltransf 99.4 7E-12 1.5E-16 99.9 13.1 147 40-187 102-285 (328)
104 PRK11727 23S rRNA mA1618 methy 99.4 6E-12 1.3E-16 105.2 12.9 155 77-236 114-292 (321)
105 TIGR02081 metW methionine bios 99.4 1E-11 2.3E-16 97.5 13.6 142 77-235 13-166 (194)
106 PRK10909 rsmD 16S rRNA m(2)G96 99.4 2.9E-12 6.3E-17 100.4 10.3 123 58-186 33-158 (199)
107 PTZ00146 fibrillarin; Provisio 99.4 2.2E-11 4.8E-16 99.8 15.3 122 56-186 107-236 (293)
108 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.7E-12 7.9E-17 100.0 10.4 108 77-186 16-131 (194)
109 PRK13255 thiopurine S-methyltr 99.4 1.6E-11 3.5E-16 97.9 13.0 123 62-187 23-155 (218)
110 KOG1541 Predicted protein carb 99.4 8.5E-12 1.9E-16 96.5 10.7 101 77-186 50-159 (270)
111 PRK00312 pcm protein-L-isoaspa 99.4 2E-11 4.3E-16 97.3 13.3 114 62-188 63-176 (212)
112 PRK15128 23S rRNA m(5)C1962 me 99.4 9.1E-12 2E-16 107.5 11.9 108 77-186 220-338 (396)
113 PRK03522 rumB 23S rRNA methylu 99.3 1.8E-11 3.9E-16 103.2 13.3 102 76-186 172-273 (315)
114 PRK11088 rrmA 23S rRNA methylt 99.3 1E-11 2.3E-16 102.6 11.2 110 62-190 71-184 (272)
115 TIGR03438 probable methyltrans 99.3 1.6E-11 3.5E-16 102.8 12.1 108 77-186 63-176 (301)
116 PLN03075 nicotianamine synthas 99.3 2.4E-11 5.3E-16 99.9 12.5 106 77-186 123-232 (296)
117 TIGR02085 meth_trns_rumB 23S r 99.3 2.3E-11 5.1E-16 104.7 12.9 115 63-186 219-333 (374)
118 COG2518 Pcm Protein-L-isoaspar 99.3 2.8E-11 6.1E-16 94.1 11.8 113 61-188 56-170 (209)
119 PF05219 DREV: DREV methyltran 99.3 3.5E-11 7.7E-16 96.0 12.2 165 55-236 68-240 (265)
120 KOG2361 Predicted methyltransf 99.3 2.2E-11 4.8E-16 95.5 10.8 150 80-235 74-236 (264)
121 COG4106 Tam Trans-aconitate me 99.3 1.1E-11 2.5E-16 95.6 8.9 105 74-191 27-133 (257)
122 PRK11188 rrmJ 23S rRNA methylt 99.3 1.1E-10 2.4E-15 92.6 14.4 99 75-186 49-164 (209)
123 PRK10901 16S rRNA methyltransf 99.3 1.5E-10 3.3E-15 101.4 16.2 110 74-186 241-371 (427)
124 PLN02781 Probable caffeoyl-CoA 99.3 1.9E-11 4E-16 98.7 9.5 107 73-186 64-177 (234)
125 PRK14902 16S rRNA methyltransf 99.3 1.1E-10 2.4E-15 102.8 15.2 111 74-186 247-378 (444)
126 COG2519 GCD14 tRNA(1-methylade 99.3 1.5E-10 3.3E-15 92.0 12.8 106 69-186 86-194 (256)
127 PRK14121 tRNA (guanine-N(7)-)- 99.2 1E-10 2.2E-15 99.7 12.3 108 77-186 122-234 (390)
128 TIGR00438 rrmJ cell division p 99.2 7.6E-11 1.6E-15 92.1 10.6 110 64-186 19-145 (188)
129 COG2521 Predicted archaeal met 99.2 1.6E-10 3.6E-15 90.2 12.0 175 41-239 102-280 (287)
130 TIGR00479 rumA 23S rRNA (uraci 99.2 1.2E-10 2.5E-15 102.4 12.7 117 61-186 276-395 (431)
131 cd02440 AdoMet_MTases S-adenos 99.2 1.4E-10 3.1E-15 80.4 10.7 103 80-186 1-103 (107)
132 KOG1499 Protein arginine N-met 99.2 3.4E-11 7.4E-16 99.6 8.4 112 69-184 52-164 (346)
133 TIGR00095 RNA methyltransferas 99.2 7.2E-11 1.6E-15 92.1 9.6 127 57-186 28-158 (189)
134 PRK13943 protein-L-isoaspartat 99.2 2.6E-10 5.6E-15 95.8 13.0 112 64-187 67-180 (322)
135 PRK14901 16S rRNA methyltransf 99.2 3.9E-10 8.4E-15 99.1 14.7 111 74-186 249-383 (434)
136 KOG2793 Putative N2,N2-dimethy 99.2 1.4E-10 3E-15 92.9 10.8 123 55-182 53-194 (248)
137 PF01135 PCMT: Protein-L-isoas 99.2 7.7E-11 1.7E-15 93.1 8.6 113 61-187 56-172 (209)
138 PRK14903 16S rRNA methyltransf 99.2 3.3E-10 7.1E-15 99.3 12.7 112 74-187 234-366 (431)
139 TIGR00478 tly hemolysin TlyA f 99.2 1.8E-10 3.9E-15 92.0 10.1 159 57-235 55-216 (228)
140 PF08704 GCD14: tRNA methyltra 99.2 2.5E-10 5.4E-15 92.1 10.8 142 69-243 32-181 (247)
141 PRK04457 spermidine synthase; 99.2 1.2E-10 2.6E-15 95.6 9.1 107 77-186 66-176 (262)
142 PHA03412 putative methyltransf 99.2 8.8E-10 1.9E-14 87.6 13.4 95 77-181 49-157 (241)
143 TIGR00563 rsmB ribosomal RNA s 99.2 4.5E-10 9.7E-15 98.5 12.5 119 61-187 226-368 (426)
144 PRK14904 16S rRNA methyltransf 99.2 1.4E-09 3.1E-14 95.8 15.5 125 56-187 232-377 (445)
145 smart00650 rADc Ribosomal RNA 99.1 4.5E-10 9.7E-15 86.3 9.8 110 67-186 3-112 (169)
146 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.5E-09 3.3E-14 89.2 13.3 110 74-186 68-198 (264)
147 PF05724 TPMT: Thiopurine S-me 99.1 1.8E-09 4E-14 85.9 13.1 158 61-235 22-189 (218)
148 KOG3010 Methyltransferase [Gen 99.1 2.3E-10 4.9E-15 89.9 7.2 100 80-188 36-138 (261)
149 KOG3420 Predicted RNA methylas 99.1 2E-10 4.4E-15 83.2 6.4 110 37-157 15-124 (185)
150 KOG1500 Protein arginine N-met 99.1 1.9E-09 4.1E-14 88.6 12.4 110 70-184 170-279 (517)
151 KOG3191 Predicted N6-DNA-methy 99.1 3E-09 6.5E-14 80.1 12.4 131 78-238 44-195 (209)
152 PRK05031 tRNA (uracil-5-)-meth 99.1 1.1E-09 2.5E-14 93.9 11.6 114 61-186 191-319 (362)
153 PLN02476 O-methyltransferase 99.1 9.2E-10 2E-14 90.2 9.8 105 75-186 116-227 (278)
154 PF03602 Cons_hypoth95: Conser 99.1 9.6E-11 2.1E-15 90.8 3.5 127 56-186 19-152 (183)
155 PRK03612 spermidine synthase; 99.1 1E-09 2.2E-14 98.4 10.5 109 77-186 297-414 (521)
156 PF00891 Methyltransf_2: O-met 99.1 2.5E-09 5.5E-14 86.8 11.8 110 67-190 90-202 (241)
157 COG1092 Predicted SAM-dependen 99.1 2.9E-09 6.3E-14 91.1 12.5 107 77-186 217-335 (393)
158 COG4122 Predicted O-methyltran 99.1 1.2E-09 2.7E-14 86.1 9.5 104 76-186 58-165 (219)
159 PRK00811 spermidine synthase; 99.1 1.2E-09 2.7E-14 90.6 10.0 108 77-186 76-190 (283)
160 COG0742 N6-adenine-specific me 99.0 3E-09 6.6E-14 81.5 10.7 128 56-186 20-153 (187)
161 PF03291 Pox_MCEL: mRNA cappin 99.0 1.4E-09 3.1E-14 91.7 9.7 131 59-189 44-188 (331)
162 PRK13256 thiopurine S-methyltr 99.0 6.8E-09 1.5E-13 82.7 12.5 125 62-189 29-165 (226)
163 KOG2899 Predicted methyltransf 99.0 2.9E-09 6.3E-14 83.7 10.0 112 74-186 55-208 (288)
164 PRK04148 hypothetical protein; 99.0 1.1E-08 2.4E-13 74.4 11.2 105 64-186 3-108 (134)
165 KOG1975 mRNA cap methyltransfe 99.0 9E-09 2E-13 84.2 11.6 114 76-190 116-240 (389)
166 COG2265 TrmA SAM-dependent met 99.0 7.6E-09 1.6E-13 90.1 11.7 141 61-235 277-419 (432)
167 COG1041 Predicted DNA modifica 99.0 1.8E-08 3.8E-13 84.1 13.3 121 62-186 182-309 (347)
168 PF10672 Methyltrans_SAM: S-ad 99.0 1.2E-09 2.6E-14 89.9 6.3 109 77-186 123-237 (286)
169 TIGR02143 trmA_only tRNA (urac 99.0 9.1E-09 2E-13 88.0 11.8 114 61-186 182-310 (353)
170 PF01596 Methyltransf_3: O-met 99.0 9.7E-10 2.1E-14 86.6 5.4 115 65-186 33-154 (205)
171 TIGR00417 speE spermidine synt 99.0 5.4E-09 1.2E-13 86.3 10.0 108 77-186 72-185 (270)
172 PF05891 Methyltransf_PK: AdoM 98.9 6.6E-09 1.4E-13 81.3 9.2 145 77-235 55-200 (218)
173 PLN02232 ubiquinone biosynthes 98.9 1.3E-09 2.8E-14 82.9 5.2 128 104-238 1-149 (160)
174 PF02475 Met_10: Met-10+ like- 98.9 4.8E-09 1E-13 82.1 7.0 98 75-182 99-197 (200)
175 PRK04338 N(2),N(2)-dimethylgua 98.9 1.3E-08 2.9E-13 87.6 10.4 99 78-186 58-157 (382)
176 PRK14896 ksgA 16S ribosomal RN 98.9 1.5E-08 3.2E-13 83.1 10.0 88 63-158 15-102 (258)
177 COG3963 Phospholipid N-methylt 98.9 8.7E-08 1.9E-12 71.4 12.5 127 56-190 27-159 (194)
178 PTZ00338 dimethyladenosine tra 98.9 2E-08 4.4E-13 83.5 9.9 89 64-157 23-111 (294)
179 PF01170 UPF0020: Putative RNA 98.8 8.8E-08 1.9E-12 74.1 12.7 116 62-179 13-143 (179)
180 PLN02589 caffeoyl-CoA O-methyl 98.8 1.7E-08 3.6E-13 81.8 8.6 104 76-186 78-189 (247)
181 PRK00274 ksgA 16S ribosomal RN 98.8 1.7E-08 3.7E-13 83.4 8.8 86 65-157 30-115 (272)
182 PLN02366 spermidine synthase 98.8 4.7E-08 1E-12 81.8 10.9 107 77-186 91-205 (308)
183 PF05958 tRNA_U5-meth_tr: tRNA 98.8 3E-08 6.5E-13 84.8 9.7 85 42-134 166-250 (352)
184 COG2520 Predicted methyltransf 98.8 9.1E-08 2E-12 80.4 12.2 99 76-183 187-285 (341)
185 PF05185 PRMT5: PRMT5 arginine 98.8 3.8E-08 8.3E-13 86.3 10.2 101 77-183 186-293 (448)
186 PF02527 GidB: rRNA small subu 98.8 6.7E-08 1.5E-12 74.8 10.3 124 80-236 51-175 (184)
187 PF05148 Methyltransf_8: Hypot 98.8 2.5E-08 5.3E-13 77.4 7.7 129 58-235 54-184 (219)
188 PRK01581 speE spermidine synth 98.8 4.1E-08 9E-13 82.9 9.6 107 77-186 150-267 (374)
189 PRK10611 chemotaxis methyltran 98.8 3.2E-08 7E-13 81.7 8.8 107 78-186 116-261 (287)
190 TIGR00308 TRM1 tRNA(guanine-26 98.7 9.4E-08 2E-12 82.0 10.3 100 78-186 45-146 (374)
191 KOG2940 Predicted methyltransf 98.7 6.6E-08 1.4E-12 75.7 7.3 154 78-242 73-233 (325)
192 PF01739 CheR: CheR methyltran 98.7 5.3E-08 1.2E-12 76.2 6.3 108 77-186 31-174 (196)
193 KOG2187 tRNA uracil-5-methyltr 98.6 2.1E-07 4.4E-12 80.9 9.9 139 37-186 347-489 (534)
194 TIGR00755 ksgA dimethyladenosi 98.6 5E-07 1.1E-11 73.9 11.7 87 63-157 15-104 (253)
195 KOG3987 Uncharacterized conser 98.6 6E-09 1.3E-13 80.1 0.3 164 55-235 88-259 (288)
196 PF11968 DUF3321: Putative met 98.6 6.6E-07 1.4E-11 69.9 11.6 139 61-235 31-180 (219)
197 COG1352 CheR Methylase of chem 98.6 1E-06 2.2E-11 72.1 12.3 109 77-187 96-241 (268)
198 PF02390 Methyltransf_4: Putat 98.6 3.7E-07 8.1E-12 71.6 9.5 102 80-186 20-132 (195)
199 PF02384 N6_Mtase: N-6 DNA Met 98.6 2.6E-07 5.7E-12 77.8 8.7 123 63-188 32-184 (311)
200 PRK11933 yebU rRNA (cytosine-C 98.6 1.3E-06 2.8E-11 77.1 13.1 108 74-186 110-241 (470)
201 KOG2920 Predicted methyltransf 98.6 5.5E-08 1.2E-12 78.8 4.1 131 54-186 90-233 (282)
202 COG1189 Predicted rRNA methyla 98.6 4.8E-07 1E-11 71.5 9.2 161 56-235 58-223 (245)
203 PF12147 Methyltransf_20: Puta 98.6 2.2E-06 4.7E-11 69.8 13.1 148 77-231 135-293 (311)
204 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 2.4E-07 5.2E-12 75.1 7.3 151 75-236 54-239 (256)
205 PF05971 Methyltransf_10: Prot 98.5 8.3E-07 1.8E-11 73.3 10.5 82 78-160 103-190 (299)
206 COG0357 GidB Predicted S-adeno 98.5 7.7E-07 1.7E-11 70.2 9.9 127 78-237 68-196 (215)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.9E-06 6.3E-11 79.0 13.9 130 58-188 170-348 (702)
208 PF09445 Methyltransf_15: RNA 98.5 2E-07 4.3E-12 70.4 4.7 76 80-157 2-79 (163)
209 PLN02823 spermine synthase 98.5 8.6E-07 1.9E-11 75.1 9.0 107 77-186 103-219 (336)
210 PF03141 Methyltransf_29: Puta 98.5 1.6E-07 3.4E-12 81.7 4.6 124 55-186 91-218 (506)
211 KOG3045 Predicted RNA methylas 98.5 7.2E-07 1.6E-11 71.1 7.6 111 77-235 180-290 (325)
212 KOG3178 Hydroxyindole-O-methyl 98.4 1.4E-06 3E-11 72.7 9.0 149 79-239 179-333 (342)
213 KOG1661 Protein-L-isoaspartate 98.4 2.4E-06 5.2E-11 66.2 8.7 116 61-186 64-192 (237)
214 TIGR02987 met_A_Alw26 type II 98.4 4.6E-06 9.9E-11 75.3 11.4 76 77-157 31-122 (524)
215 KOG0820 Ribosomal RNA adenine 98.4 3.1E-06 6.7E-11 68.1 9.0 89 64-157 45-133 (315)
216 COG0220 Predicted S-adenosylme 98.3 2.8E-06 6.1E-11 67.9 8.6 106 79-186 50-163 (227)
217 PF13679 Methyltransf_32: Meth 98.3 1E-05 2.2E-10 60.1 11.0 79 76-157 24-109 (141)
218 PF07942 N2227: N2227-like pro 98.3 2.8E-05 6.1E-10 63.5 14.2 144 76-236 55-242 (270)
219 KOG1663 O-methyltransferase [S 98.3 7.5E-06 1.6E-10 64.4 9.7 106 74-186 70-182 (237)
220 PF08123 DOT1: Histone methyla 98.3 8.8E-06 1.9E-10 64.2 9.8 108 71-185 36-156 (205)
221 KOG1709 Guanidinoacetate methy 98.3 1.4E-05 2.9E-10 62.3 10.2 105 76-186 100-205 (271)
222 PF09243 Rsm22: Mitochondrial 98.3 1.8E-05 3.9E-10 65.5 11.7 109 74-189 30-141 (274)
223 COG0030 KsgA Dimethyladenosine 98.2 1.7E-05 3.7E-10 64.3 10.7 84 66-157 19-105 (259)
224 COG0144 Sun tRNA and rRNA cyto 98.2 8.4E-05 1.8E-09 63.7 14.9 112 73-186 152-287 (355)
225 PRK00536 speE spermidine synth 98.2 1.6E-05 3.5E-10 64.9 9.8 96 77-186 72-170 (262)
226 PF04816 DUF633: Family of unk 98.2 4.6E-05 1E-09 60.1 12.1 126 81-241 1-134 (205)
227 COG0116 Predicted N6-adenine-s 98.2 5.3E-05 1.1E-09 64.5 12.7 94 62-157 176-309 (381)
228 COG0421 SpeE Spermidine syntha 98.1 2.9E-05 6.2E-10 64.1 10.3 105 79-186 78-189 (282)
229 KOG1269 SAM-dependent methyltr 98.1 6.3E-06 1.4E-10 70.3 6.5 108 74-186 107-214 (364)
230 COG4076 Predicted RNA methylas 98.1 6.4E-06 1.4E-10 62.7 5.6 99 79-185 34-133 (252)
231 KOG2915 tRNA(1-methyladenosine 98.1 9.5E-05 2.1E-09 59.7 12.2 104 70-182 98-204 (314)
232 TIGR03439 methyl_EasF probable 98.1 5E-05 1.1E-09 63.9 10.7 109 76-186 75-196 (319)
233 PRK00050 16S rRNA m(4)C1402 me 98.1 8.3E-06 1.8E-10 67.7 5.9 52 69-121 11-64 (296)
234 COG0500 SmtA SAM-dependent met 98.0 0.00012 2.6E-09 54.2 11.4 102 81-189 52-157 (257)
235 PF01564 Spermine_synth: Sperm 98.0 5.9E-06 1.3E-10 67.2 4.3 107 77-186 76-190 (246)
236 PRK01544 bifunctional N5-gluta 98.0 8.7E-05 1.9E-09 66.6 11.1 108 77-186 347-461 (506)
237 PF01728 FtsJ: FtsJ-like methy 98.0 2.5E-06 5.4E-11 66.1 1.1 118 60-186 4-138 (181)
238 COG0293 FtsJ 23S rRNA methylas 97.9 0.0004 8.7E-09 54.3 12.5 112 61-186 29-158 (205)
239 PRK10742 putative methyltransf 97.9 7.5E-05 1.6E-09 60.1 8.3 86 74-162 83-178 (250)
240 PRK11760 putative 23S rRNA C24 97.8 0.00055 1.2E-08 57.6 12.9 49 61-110 188-243 (357)
241 TIGR01444 fkbM_fam methyltrans 97.8 8E-05 1.7E-09 55.2 7.4 56 80-137 1-57 (143)
242 KOG2730 Methylase [General fun 97.8 2.3E-05 5.1E-10 61.2 3.8 119 58-181 74-196 (263)
243 PF01861 DUF43: Protein of unk 97.8 0.0024 5.2E-08 51.1 15.1 152 55-236 23-178 (243)
244 KOG1501 Arginine N-methyltrans 97.8 4.5E-05 9.7E-10 65.4 5.5 97 80-178 69-165 (636)
245 COG1889 NOP1 Fibrillarin-like 97.7 0.0085 1.8E-07 46.6 15.9 122 56-186 51-179 (231)
246 PF01269 Fibrillarin: Fibrilla 97.6 0.00048 1E-08 54.3 8.5 123 55-186 47-177 (229)
247 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00062 1.3E-08 56.0 9.6 88 62-157 15-107 (262)
248 PHA01634 hypothetical protein 97.6 0.00053 1.2E-08 49.0 7.8 73 75-153 26-98 (156)
249 COG2384 Predicted SAM-dependen 97.4 0.011 2.3E-07 46.7 14.0 122 77-233 16-140 (226)
250 KOG2798 Putative trehalase [Ca 97.4 0.0067 1.4E-07 50.3 13.3 145 76-235 149-336 (369)
251 KOG2352 Predicted spermine/spe 97.4 0.0016 3.4E-08 57.0 9.5 104 80-188 51-162 (482)
252 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00034 7.4E-09 58.1 5.4 126 56-186 67-218 (283)
253 COG1064 AdhP Zn-dependent alco 97.3 0.0027 5.8E-08 53.7 9.5 138 74-233 163-308 (339)
254 KOG1331 Predicted methyltransf 97.2 0.00069 1.5E-08 55.2 5.6 114 55-186 29-142 (293)
255 PF02005 TRM: N2,N2-dimethylgu 97.2 0.00063 1.4E-08 58.7 5.6 102 77-186 49-153 (377)
256 cd00315 Cyt_C5_DNA_methylase C 97.2 0.021 4.5E-07 47.3 14.1 70 80-157 2-72 (275)
257 COG3129 Predicted SAM-dependen 97.2 0.0012 2.6E-08 52.2 6.0 97 63-160 62-166 (292)
258 PF03059 NAS: Nicotianamine sy 97.1 0.0035 7.5E-08 51.6 8.9 103 79-185 122-228 (276)
259 COG0286 HsdM Type I restrictio 97.1 0.0089 1.9E-07 53.6 12.2 117 67-187 176-326 (489)
260 COG5459 Predicted rRNA methyla 97.1 0.0012 2.6E-08 55.3 5.8 115 74-190 110-228 (484)
261 PF06962 rRNA_methylase: Putat 97.1 0.0016 3.4E-08 47.9 5.6 86 102-189 1-94 (140)
262 COG4627 Uncharacterized protei 97.1 0.0001 2.3E-09 54.4 -0.7 92 141-233 41-135 (185)
263 COG4262 Predicted spermidine s 97.0 0.0066 1.4E-07 51.3 9.7 106 77-186 289-406 (508)
264 PF13578 Methyltransf_24: Meth 97.0 8.4E-05 1.8E-09 52.2 -1.8 98 82-185 1-103 (106)
265 PF03141 Methyltransf_29: Puta 96.9 0.00088 1.9E-08 58.8 3.7 100 79-186 367-466 (506)
266 COG1867 TRM1 N2,N2-dimethylgua 96.7 0.0082 1.8E-07 50.9 7.6 100 78-186 53-153 (380)
267 KOG2671 Putative RNA methylase 96.5 0.0061 1.3E-07 51.1 5.8 114 73-188 204-355 (421)
268 KOG1122 tRNA and rRNA cytosine 96.4 0.018 3.8E-07 49.7 8.0 111 74-186 238-370 (460)
269 KOG2497 Predicted methyltransf 96.4 0.0042 9E-08 50.7 4.0 47 52-98 65-111 (262)
270 PF03269 DUF268: Caenorhabditi 96.3 0.0061 1.3E-07 45.6 4.2 103 78-190 2-114 (177)
271 PF07091 FmrO: Ribosomal RNA m 96.2 0.035 7.5E-07 44.8 8.4 75 77-157 105-181 (251)
272 KOG0024 Sorbitol dehydrogenase 96.2 0.055 1.2E-06 45.2 9.6 102 70-186 162-272 (354)
273 PRK01747 mnmC bifunctional tRN 96.2 0.022 4.9E-07 53.1 8.3 127 78-235 58-226 (662)
274 KOG2198 tRNA cytosine-5-methyl 96.2 0.048 1E-06 46.3 9.2 109 74-186 152-295 (375)
275 PRK09424 pntA NAD(P) transhydr 96.2 0.076 1.7E-06 47.7 11.0 99 75-186 162-284 (509)
276 KOG2078 tRNA modification enzy 96.1 0.0037 8.1E-08 53.7 2.5 80 53-135 226-306 (495)
277 COG4798 Predicted methyltransf 96.1 0.11 2.3E-06 40.4 10.0 140 74-234 45-203 (238)
278 KOG1596 Fibrillarin and relate 96.1 0.027 5.8E-07 45.1 6.9 124 55-190 130-264 (317)
279 KOG1227 Putative methyltransfe 96.1 0.0095 2.1E-07 49.0 4.5 95 56-153 167-268 (351)
280 KOG1253 tRNA methyltransferase 96.1 0.0052 1.1E-07 53.8 3.1 102 77-186 109-215 (525)
281 PRK09880 L-idonate 5-dehydroge 95.9 0.12 2.6E-06 44.1 10.7 98 74-186 166-265 (343)
282 COG1568 Predicted methyltransf 95.8 0.036 7.8E-07 45.3 6.8 99 75-180 150-250 (354)
283 TIGR02822 adh_fam_2 zinc-bindi 95.8 0.13 2.9E-06 43.6 10.8 92 73-186 161-253 (329)
284 PF04989 CmcI: Cephalosporin h 95.8 0.11 2.3E-06 41.0 9.1 103 77-186 32-146 (206)
285 KOG4058 Uncharacterized conser 95.7 0.084 1.8E-06 39.1 7.7 52 76-128 71-122 (199)
286 PF04445 SAM_MT: Putative SAM- 95.7 0.057 1.2E-06 43.3 7.5 80 79-160 77-163 (234)
287 PF11599 AviRa: RRNA methyltra 95.6 0.052 1.1E-06 42.7 6.6 60 61-122 36-98 (246)
288 PF02636 Methyltransf_28: Puta 95.6 0.033 7.2E-07 45.5 6.0 43 77-120 18-69 (252)
289 KOG2651 rRNA adenine N-6-methy 95.4 0.048 1E-06 46.5 6.3 49 64-112 140-188 (476)
290 COG1565 Uncharacterized conser 95.4 0.078 1.7E-06 45.1 7.5 58 62-120 59-128 (370)
291 PF01555 N6_N4_Mtase: DNA meth 95.4 0.062 1.3E-06 42.6 6.9 57 58-117 173-229 (231)
292 PRK11524 putative methyltransf 95.4 0.075 1.6E-06 44.2 7.5 57 63-122 195-251 (284)
293 PRK15001 SAM-dependent 23S rib 95.2 0.69 1.5E-05 40.1 13.1 131 41-186 9-141 (378)
294 COG0270 Dcm Site-specific DNA 95.1 0.26 5.6E-06 42.0 10.0 128 78-232 3-143 (328)
295 COG1063 Tdh Threonine dehydrog 95.1 0.15 3.3E-06 43.8 8.6 98 76-186 167-268 (350)
296 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.39 8.5E-06 40.3 10.7 85 77-186 144-230 (308)
297 PF04672 Methyltransf_19: S-ad 94.9 0.21 4.6E-06 40.9 8.3 107 79-188 70-191 (267)
298 KOG3115 Methyltransferase-like 94.8 0.1 2.2E-06 40.8 5.9 45 77-122 60-105 (249)
299 PF07757 AdoMet_MTase: Predict 94.6 0.067 1.5E-06 37.3 4.2 33 77-110 58-90 (112)
300 PF10354 DUF2431: Domain of un 94.6 1.1 2.4E-05 34.1 11.4 128 85-234 4-150 (166)
301 TIGR00006 S-adenosyl-methyltra 94.6 0.18 3.8E-06 42.3 7.5 57 64-121 7-64 (305)
302 PRK13699 putative methylase; P 94.5 0.21 4.5E-06 40.2 7.6 57 63-122 150-206 (227)
303 PLN02668 indole-3-acetate carb 94.4 0.39 8.4E-06 41.7 9.2 35 78-112 64-114 (386)
304 PF03492 Methyltransf_7: SAM d 94.3 0.25 5.5E-06 42.1 8.1 114 77-192 16-188 (334)
305 cd05188 MDR Medium chain reduc 94.2 0.48 1E-05 38.2 9.4 92 76-186 133-231 (271)
306 KOG2912 Predicted DNA methylas 94.2 0.13 2.8E-06 42.9 5.7 79 81-160 106-191 (419)
307 cd08237 ribitol-5-phosphate_DH 94.1 0.34 7.4E-06 41.3 8.5 92 75-186 161-255 (341)
308 cd08254 hydroxyacyl_CoA_DH 6-h 93.9 0.27 5.9E-06 41.4 7.6 99 74-186 162-262 (338)
309 PRK10458 DNA cytosine methylas 93.9 1.8 4E-05 38.7 12.8 42 78-120 88-129 (467)
310 PF06859 Bin3: Bicoid-interact 93.8 0.02 4.4E-07 40.0 0.4 39 147-186 1-43 (110)
311 PRK13699 putative methylase; P 93.4 0.48 1E-05 38.1 7.6 43 143-185 16-70 (227)
312 COG4301 Uncharacterized conser 93.1 1.6 3.5E-05 35.4 9.9 122 62-186 63-192 (321)
313 cd08239 THR_DH_like L-threonin 92.9 2.9 6.4E-05 35.3 12.3 97 73-186 159-261 (339)
314 PF00107 ADH_zinc_N: Zinc-bind 92.9 0.33 7.1E-06 34.9 5.6 81 87-186 1-88 (130)
315 KOG2539 Mitochondrial/chloropl 92.7 0.38 8.3E-06 42.3 6.4 112 74-186 197-314 (491)
316 KOG4589 Cell division protein 92.6 0.18 3.9E-06 39.0 3.9 37 74-110 66-104 (232)
317 TIGR03366 HpnZ_proposed putati 92.4 2.2 4.8E-05 35.1 10.6 96 75-186 118-217 (280)
318 cd08230 glucose_DH Glucose deh 92.3 1.5 3.3E-05 37.5 9.8 95 75-186 170-268 (355)
319 PF00145 DNA_methylase: C-5 cy 91.9 0.34 7.3E-06 40.8 5.2 42 80-122 2-43 (335)
320 TIGR00675 dcm DNA-methyltransf 91.6 0.48 1E-05 40.1 5.8 40 81-121 1-40 (315)
321 PF11899 DUF3419: Protein of u 91.5 0.73 1.6E-05 40.0 6.8 53 56-113 18-70 (380)
322 TIGR00497 hsdM type I restrict 91.5 4.1 8.9E-05 36.9 11.9 107 77-186 217-354 (501)
323 PLN03154 putative allyl alcoho 91.2 2.8 6.1E-05 35.8 10.3 100 73-186 154-257 (348)
324 KOG1099 SAM-dependent methyltr 91.2 0.48 1.1E-05 37.8 4.9 98 75-186 38-162 (294)
325 TIGR03451 mycoS_dep_FDH mycoth 91.2 0.5 1.1E-05 40.5 5.6 99 74-186 173-275 (358)
326 cd08281 liver_ADH_like1 Zinc-d 90.5 1.6 3.5E-05 37.6 8.2 100 73-186 187-289 (371)
327 cd08232 idonate-5-DH L-idonate 90.3 3.2 7E-05 35.0 9.8 93 77-186 165-261 (339)
328 KOG1562 Spermidine synthase [A 90.2 1.1 2.4E-05 37.3 6.3 109 76-186 120-235 (337)
329 TIGR00561 pntA NAD(P) transhyd 89.7 1.4 3E-05 39.8 7.1 97 76-184 162-281 (511)
330 COG0604 Qor NADPH:quinone redu 89.2 1.5 3.2E-05 37.3 6.8 99 73-186 138-240 (326)
331 COG1255 Uncharacterized protei 89.2 4.9 0.00011 28.5 8.0 86 79-186 15-101 (129)
332 PF05206 TRM13: Methyltransfer 89.2 1 2.2E-05 37.0 5.5 43 68-110 9-57 (259)
333 PF03686 UPF0146: Uncharacteri 88.9 1.2 2.7E-05 32.1 5.1 91 64-177 3-94 (127)
334 PRK05786 fabG 3-ketoacyl-(acyl 88.4 7.6 0.00016 30.7 10.2 105 77-186 4-134 (238)
335 PF08468 MTS_N: Methyltransfer 88.3 1.1 2.4E-05 33.7 4.8 103 67-186 2-104 (155)
336 PLN02586 probable cinnamyl alc 88.2 2.9 6.2E-05 36.0 8.0 95 76-186 182-277 (360)
337 PRK11524 putative methyltransf 88.2 0.75 1.6E-05 38.3 4.3 43 144-186 24-79 (284)
338 cd08245 CAD Cinnamyl alcohol d 88.0 7.7 0.00017 32.5 10.4 97 73-186 158-255 (330)
339 cd08255 2-desacetyl-2-hydroxye 87.8 10 0.00022 30.8 10.8 95 73-186 93-189 (277)
340 TIGR00027 mthyl_TIGR00027 meth 87.7 9.9 0.00021 31.2 10.4 151 79-234 83-248 (260)
341 PF05430 Methyltransf_30: S-ad 87.6 0.75 1.6E-05 33.2 3.4 60 146-235 49-110 (124)
342 TIGR02825 B4_12hDH leukotriene 87.6 3.6 7.9E-05 34.5 8.1 99 73-186 134-236 (325)
343 cd01842 SGNH_hydrolase_like_5 87.5 2.4 5.2E-05 32.6 6.2 46 145-190 48-102 (183)
344 cd08294 leukotriene_B4_DH_like 87.4 3.2 6.9E-05 34.7 7.8 99 73-186 139-240 (329)
345 PF01795 Methyltransf_5: MraW 87.4 0.94 2E-05 38.1 4.3 51 70-121 13-64 (310)
346 PRK09489 rsmC 16S ribosomal RN 87.0 5.6 0.00012 34.1 8.9 106 60-186 6-111 (342)
347 cd08295 double_bond_reductase_ 86.9 6.1 0.00013 33.4 9.2 100 73-186 147-250 (338)
348 PF07279 DUF1442: Protein of u 86.9 12 0.00026 29.7 9.9 108 66-186 30-147 (218)
349 KOG3924 Putative protein methy 86.7 4.6 0.0001 35.0 8.0 108 73-186 188-307 (419)
350 cd08293 PTGR2 Prostaglandin re 85.5 2.4 5.2E-05 35.9 6.0 94 79-186 156-253 (345)
351 cd08283 FDH_like_1 Glutathione 85.5 2.9 6.3E-05 36.3 6.6 106 73-186 180-305 (386)
352 KOG0023 Alcohol dehydrogenase, 84.6 2.3 5E-05 35.8 5.2 38 74-111 178-216 (360)
353 cd08234 threonine_DH_like L-th 84.3 15 0.00034 30.7 10.4 97 73-186 155-256 (334)
354 cd08298 CAD2 Cinnamyl alcohol 84.3 17 0.00037 30.3 10.7 92 73-186 163-255 (329)
355 KOG1209 1-Acyl dihydroxyaceton 84.2 3.1 6.7E-05 33.1 5.4 35 77-111 6-43 (289)
356 PRK01438 murD UDP-N-acetylmura 83.8 15 0.00033 32.9 10.6 75 75-157 13-88 (480)
357 COG0275 Predicted S-adenosylme 83.4 6.8 0.00015 32.8 7.4 57 65-122 11-69 (314)
358 cd05285 sorbitol_DH Sorbitol d 83.2 8 0.00017 32.7 8.2 101 72-186 157-264 (343)
359 PF11899 DUF3419: Protein of u 82.8 2.2 4.7E-05 37.1 4.6 42 144-186 292-333 (380)
360 PF02086 MethyltransfD12: D12 82.6 2 4.4E-05 34.9 4.2 47 64-111 7-53 (260)
361 COG0677 WecC UDP-N-acetyl-D-ma 82.5 8.4 0.00018 33.6 7.8 39 147-185 84-126 (436)
362 PF02737 3HCDH_N: 3-hydroxyacy 82.4 14 0.00031 28.4 8.6 147 81-236 2-179 (180)
363 cd08261 Zn_ADH7 Alcohol dehydr 82.4 5.9 0.00013 33.4 7.1 100 73-186 155-257 (337)
364 cd08296 CAD_like Cinnamyl alco 82.1 8.7 0.00019 32.4 8.0 98 74-186 160-258 (333)
365 KOG1098 Putative SAM-dependent 82.1 2.2 4.8E-05 39.0 4.4 50 61-110 28-79 (780)
366 PF05050 Methyltransf_21: Meth 82.1 6.9 0.00015 29.0 6.7 43 83-126 1-50 (167)
367 PLN02514 cinnamyl-alcohol dehy 81.6 8.4 0.00018 33.0 7.8 93 76-186 179-274 (357)
368 COG0062 Uncharacterized conser 81.5 19 0.00042 28.3 9.0 117 61-186 32-156 (203)
369 PRK06701 short chain dehydroge 81.3 16 0.00035 30.2 9.2 34 76-110 44-80 (290)
370 PRK03369 murD UDP-N-acetylmura 81.2 12 0.00025 33.8 8.9 71 75-157 9-80 (488)
371 PRK10309 galactitol-1-phosphat 80.9 7.7 0.00017 32.9 7.3 99 74-186 157-259 (347)
372 PRK08324 short chain dehydroge 80.8 16 0.00034 34.5 9.8 77 76-157 420-508 (681)
373 PF02153 PDH: Prephenate dehyd 80.8 8.6 0.00019 31.4 7.2 71 92-181 2-73 (258)
374 cd05278 FDH_like Formaldehyde 80.6 6.1 0.00013 33.3 6.6 99 74-186 164-266 (347)
375 PRK05708 2-dehydropantoate 2-r 80.6 18 0.0004 30.3 9.3 97 79-186 3-103 (305)
376 PRK08265 short chain dehydroge 80.5 25 0.00054 28.4 10.0 74 77-157 5-90 (261)
377 cd08242 MDR_like Medium chain 80.1 32 0.0007 28.5 10.8 93 73-186 151-244 (319)
378 cd08231 MDR_TM0436_like Hypoth 80.0 36 0.00079 28.9 12.9 97 76-186 176-279 (361)
379 cd08285 NADP_ADH NADP(H)-depen 80.0 10 0.00023 32.1 7.8 100 73-186 162-265 (351)
380 cd08233 butanediol_DH_like (2R 79.9 11 0.00023 32.1 7.9 100 73-186 168-271 (351)
381 PRK08306 dipicolinate synthase 79.7 13 0.00029 31.1 8.2 38 75-112 149-187 (296)
382 COG3510 CmcI Cephalosporin hyd 79.1 22 0.00047 27.9 8.2 121 55-186 48-179 (237)
383 TIGR03201 dearomat_had 6-hydro 77.9 10 0.00022 32.2 7.2 45 73-118 162-207 (349)
384 PF11312 DUF3115: Protein of u 77.4 9.9 0.00021 32.0 6.5 109 78-186 87-241 (315)
385 PF10237 N6-adenineMlase: Prob 77.4 29 0.00063 26.3 10.8 109 61-186 11-122 (162)
386 cd08236 sugar_DH NAD(P)-depend 76.8 16 0.00035 30.7 8.1 95 73-186 155-257 (343)
387 PF01488 Shikimate_DH: Shikima 76.8 5.3 0.00011 29.1 4.4 76 74-157 8-85 (135)
388 KOG0821 Predicted ribosomal RN 75.7 4.8 0.0001 32.1 4.1 49 63-111 36-84 (326)
389 COG0863 DNA modification methy 75.3 15 0.00033 30.4 7.4 57 62-121 208-264 (302)
390 PF07109 Mg-por_mtran_C: Magne 75.2 6.2 0.00013 27.1 4.0 75 154-236 2-82 (97)
391 cd00401 AdoHcyase S-adenosyl-L 75.0 12 0.00026 33.0 6.8 89 74-186 198-288 (413)
392 PRK07806 short chain dehydroge 74.8 32 0.00069 27.3 9.0 106 77-186 5-133 (248)
393 PRK12548 shikimate 5-dehydroge 74.2 30 0.00064 28.8 8.8 47 62-110 110-160 (289)
394 cd08270 MDR4 Medium chain dehy 74.1 43 0.00093 27.4 9.8 89 76-186 131-221 (305)
395 PRK13771 putative alcohol dehy 74.0 29 0.00063 29.0 8.9 94 74-186 159-254 (334)
396 KOG2352 Predicted spermine/spe 73.8 5.6 0.00012 35.4 4.4 104 77-186 295-415 (482)
397 PRK08594 enoyl-(acyl carrier p 73.2 45 0.00098 26.9 9.5 33 77-109 6-42 (257)
398 COG1748 LYS9 Saccharopine dehy 73.1 14 0.0003 32.3 6.6 72 79-158 2-79 (389)
399 cd08278 benzyl_alcohol_DH Benz 73.0 14 0.00031 31.6 6.8 96 74-186 183-284 (365)
400 PRK07533 enoyl-(acyl carrier p 72.8 48 0.001 26.7 10.4 36 76-111 8-47 (258)
401 PRK06035 3-hydroxyacyl-CoA deh 72.5 33 0.00071 28.5 8.7 34 79-113 4-39 (291)
402 PRK07889 enoyl-(acyl carrier p 72.0 29 0.00062 28.0 8.1 35 76-110 5-43 (256)
403 PRK06128 oxidoreductase; Provi 71.9 44 0.00095 27.7 9.4 34 76-110 53-89 (300)
404 PRK07109 short chain dehydroge 71.8 55 0.0012 27.8 10.0 78 76-157 6-95 (334)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 71.6 3.8 8.2E-05 31.8 2.7 24 162-186 95-118 (185)
406 PRK09260 3-hydroxybutyryl-CoA 71.6 19 0.00041 29.8 7.1 99 80-186 3-116 (288)
407 COG3315 O-Methyltransferase in 71.4 43 0.00094 28.1 9.0 154 78-234 93-262 (297)
408 PRK07417 arogenate dehydrogena 71.3 25 0.00054 29.0 7.6 82 80-181 2-85 (279)
409 PF03446 NAD_binding_2: NAD bi 70.9 8.1 0.00018 29.1 4.3 76 87-181 8-88 (163)
410 cd08291 ETR_like_1 2-enoyl thi 70.8 13 0.00029 31.1 6.0 95 77-186 142-241 (324)
411 COG1062 AdhC Zn-dependent alco 70.7 15 0.00032 31.5 6.0 46 73-119 181-228 (366)
412 cd05281 TDH Threonine dehydrog 70.7 26 0.00056 29.6 7.8 97 76-186 162-261 (341)
413 PRK10083 putative oxidoreducta 70.6 31 0.00068 28.9 8.3 100 73-186 156-258 (339)
414 cd08240 6_hydroxyhexanoate_dh_ 70.0 27 0.00059 29.5 7.9 96 77-186 175-273 (350)
415 cd01080 NAD_bind_m-THF_DH_Cycl 69.7 30 0.00066 26.3 7.2 47 64-111 30-79 (168)
416 PRK01710 murD UDP-N-acetylmura 69.1 26 0.00057 31.2 7.8 35 77-111 13-48 (458)
417 KOG0822 Protein kinase inhibit 68.4 30 0.00066 31.5 7.7 101 78-184 368-475 (649)
418 PF12242 Eno-Rase_NADH_b: NAD( 68.3 23 0.00051 23.1 5.3 45 65-109 26-73 (78)
419 PRK09422 ethanol-active dehydr 68.3 30 0.00064 29.0 7.7 100 73-186 158-260 (338)
420 COG0686 Ald Alanine dehydrogen 68.1 14 0.00031 31.2 5.4 96 77-184 167-265 (371)
421 PRK06079 enoyl-(acyl carrier p 68.0 51 0.0011 26.5 8.7 35 76-110 5-43 (252)
422 PRK05650 short chain dehydroge 67.9 49 0.0011 26.8 8.7 74 80-157 2-87 (270)
423 PF12692 Methyltransf_17: S-ad 67.9 21 0.00046 26.6 5.6 43 66-109 18-61 (160)
424 PRK05808 3-hydroxybutyryl-CoA 67.8 50 0.0011 27.2 8.7 34 146-183 81-114 (282)
425 TIGR02818 adh_III_F_hyde S-(hy 67.6 17 0.00036 31.3 6.1 100 73-186 181-286 (368)
426 PRK15057 UDP-glucose 6-dehydro 67.4 55 0.0012 28.6 9.2 14 100-113 22-35 (388)
427 PRK00141 murD UDP-N-acetylmura 67.1 48 0.001 29.7 9.1 37 75-111 12-49 (473)
428 cd08263 Zn_ADH10 Alcohol dehyd 66.8 22 0.00047 30.4 6.6 98 75-186 185-286 (367)
429 COG2813 RsmC 16S RNA G1207 met 66.8 17 0.00038 30.4 5.6 36 147-186 37-72 (300)
430 TIGR00692 tdh L-threonine 3-de 66.6 24 0.00052 29.7 6.8 97 76-186 160-260 (340)
431 PLN02740 Alcohol dehydrogenase 66.1 17 0.00037 31.4 5.9 97 73-186 194-299 (381)
432 COG5379 BtaA S-adenosylmethion 66.1 14 0.0003 30.9 4.9 38 75-113 61-98 (414)
433 PRK11064 wecC UDP-N-acetyl-D-m 66.1 68 0.0015 28.3 9.6 34 79-113 4-39 (415)
434 PF02558 ApbA: Ketopantoate re 65.8 8.1 0.00018 28.4 3.4 36 145-186 65-100 (151)
435 cd05283 CAD1 Cinnamyl alcohol 65.6 62 0.0013 27.2 9.1 94 74-186 166-262 (337)
436 PRK12939 short chain dehydroge 65.4 58 0.0013 25.7 8.6 36 77-113 6-44 (250)
437 PRK12826 3-ketoacyl-(acyl-carr 64.9 44 0.00096 26.4 7.8 77 77-157 5-93 (251)
438 PTZ00357 methyltransferase; Pr 64.8 58 0.0013 30.9 8.9 33 80-112 703-740 (1072)
439 cd08279 Zn_ADH_class_III Class 64.5 22 0.00048 30.4 6.2 100 73-186 178-281 (363)
440 PRK14106 murD UDP-N-acetylmura 64.5 33 0.00072 30.3 7.5 32 77-110 4-38 (450)
441 cd05279 Zn_ADH1 Liver alcohol 64.1 37 0.0008 29.0 7.6 100 73-186 179-284 (365)
442 cd08266 Zn_ADH_like1 Alcohol d 64.0 70 0.0015 26.4 9.2 93 74-186 163-264 (342)
443 PF01555 N6_N4_Mtase: DNA meth 64.0 17 0.00038 28.4 5.2 21 166-186 35-55 (231)
444 COG0287 TyrA Prephenate dehydr 63.9 39 0.00084 28.1 7.3 30 146-181 63-92 (279)
445 cd08289 MDR_yhfp_like Yhfp put 63.9 33 0.00072 28.5 7.1 95 77-186 146-242 (326)
446 PRK07370 enoyl-(acyl carrier p 63.6 55 0.0012 26.4 8.2 33 77-109 5-41 (258)
447 cd08243 quinone_oxidoreductase 63.4 62 0.0013 26.5 8.6 92 75-186 140-237 (320)
448 PRK06522 2-dehydropantoate 2-r 63.3 50 0.0011 27.3 8.0 94 80-186 2-99 (304)
449 COG0771 MurD UDP-N-acetylmuram 63.2 40 0.00086 30.1 7.5 73 77-157 6-79 (448)
450 PRK08655 prephenate dehydrogen 63.0 44 0.00095 29.7 7.9 33 80-113 2-37 (437)
451 PRK06139 short chain dehydroge 62.9 57 0.0012 27.7 8.4 77 77-157 6-94 (330)
452 TIGR01809 Shik-DH-AROM shikima 62.5 89 0.0019 25.9 12.1 38 76-113 123-162 (282)
453 COG1893 ApbA Ketopantoate redu 62.4 53 0.0011 27.7 7.9 96 80-186 2-100 (307)
454 cd01075 NAD_bind_Leu_Phe_Val_D 62.4 54 0.0012 25.7 7.5 38 74-113 24-64 (200)
455 PRK06172 short chain dehydroge 62.3 29 0.00064 27.7 6.3 77 77-157 6-94 (253)
456 cd08292 ETR_like_2 2-enoyl thi 62.3 31 0.00068 28.6 6.7 99 73-186 135-237 (324)
457 PRK07890 short chain dehydroge 61.9 26 0.00057 28.0 6.0 77 77-157 4-92 (258)
458 PRK00421 murC UDP-N-acetylmura 60.5 64 0.0014 28.8 8.6 37 75-111 4-42 (461)
459 PRK08293 3-hydroxybutyryl-CoA 59.9 91 0.002 25.8 8.9 33 80-113 5-39 (287)
460 cd05288 PGDH Prostaglandin deh 59.1 33 0.00072 28.5 6.3 99 74-186 142-243 (329)
461 COG4017 Uncharacterized protei 58.9 36 0.00079 26.7 5.7 56 56-112 19-79 (254)
462 PRK12549 shikimate 5-dehydroge 58.9 1E+02 0.0023 25.5 9.4 51 63-113 112-164 (284)
463 PRK00094 gpsA NAD(P)H-dependen 58.7 51 0.0011 27.6 7.4 95 80-184 3-102 (325)
464 PRK12744 short chain dehydroge 57.7 74 0.0016 25.4 7.9 31 77-108 7-40 (257)
465 PRK08217 fabG 3-ketoacyl-(acyl 57.6 41 0.00088 26.6 6.4 36 77-113 4-42 (253)
466 PRK02705 murD UDP-N-acetylmura 57.2 76 0.0017 28.2 8.5 32 80-111 2-34 (459)
467 PRK06249 2-dehydropantoate 2-r 56.8 59 0.0013 27.3 7.4 98 78-186 5-105 (313)
468 PRK07502 cyclohexadienyl dehyd 56.7 68 0.0015 26.8 7.7 88 79-184 7-97 (307)
469 PF11253 DUF3052: Protein of u 56.7 64 0.0014 23.3 6.3 66 146-234 44-109 (127)
470 PRK04690 murD UDP-N-acetylmura 56.6 72 0.0016 28.6 8.2 34 77-110 7-41 (468)
471 PRK07985 oxidoreductase; Provi 56.5 76 0.0016 26.2 7.9 33 76-109 47-82 (294)
472 PRK07774 short chain dehydroge 56.4 46 0.001 26.4 6.5 36 77-113 5-43 (250)
473 PF02254 TrkA_N: TrkA-N domain 56.2 23 0.0005 24.5 4.1 28 86-113 4-34 (116)
474 cd08290 ETR 2-enoyl thioester 56.1 30 0.00064 29.1 5.5 37 74-110 143-181 (341)
475 TIGR00006 S-adenosyl-methyltra 56.1 13 0.00029 31.2 3.3 27 163-189 216-242 (305)
476 PRK07523 gluconate 5-dehydroge 56.1 64 0.0014 25.7 7.3 78 76-157 8-97 (255)
477 PF08351 DUF1726: Domain of un 56.0 13 0.00028 25.2 2.7 44 145-194 9-52 (92)
478 PRK05854 short chain dehydroge 55.9 71 0.0015 26.7 7.7 80 76-157 12-103 (313)
479 PRK09291 short chain dehydroge 55.9 41 0.00089 26.8 6.1 74 79-156 3-82 (257)
480 cd08300 alcohol_DH_class_III c 55.8 37 0.00081 29.1 6.1 100 73-186 182-287 (368)
481 COG2910 Putative NADH-flavin r 55.6 55 0.0012 25.6 6.2 83 86-179 7-94 (211)
482 PRK06914 short chain dehydroge 55.6 72 0.0016 25.9 7.6 78 78-157 3-91 (280)
483 PRK09072 short chain dehydroge 55.4 1.1E+02 0.0023 24.6 9.0 76 77-157 4-90 (263)
484 PRK08251 short chain dehydroge 55.2 70 0.0015 25.3 7.4 77 78-156 2-90 (248)
485 cd08267 MDR1 Medium chain dehy 54.9 1.2E+02 0.0025 24.8 10.2 35 75-109 141-177 (319)
486 PLN03209 translocon at the inn 54.8 37 0.00081 31.3 6.1 40 73-113 75-117 (576)
487 KOG1197 Predicted quinone oxid 54.8 69 0.0015 26.5 6.9 99 73-186 142-244 (336)
488 PF01210 NAD_Gly3P_dh_N: NAD-d 54.7 20 0.00042 26.8 3.7 97 81-186 2-102 (157)
489 cd08301 alcohol_DH_plants Plan 54.7 38 0.00083 29.0 6.0 44 73-117 183-228 (369)
490 PRK06124 gluconate 5-dehydroge 54.4 78 0.0017 25.2 7.5 78 76-157 9-98 (256)
491 PF14740 DUF4471: Domain of un 54.3 13 0.00028 31.1 2.8 67 145-233 220-286 (289)
492 PRK15182 Vi polysaccharide bio 54.2 47 0.001 29.5 6.5 33 79-113 7-41 (425)
493 PRK07066 3-hydroxybutyryl-CoA 54.0 1.4E+02 0.003 25.4 11.4 100 79-186 8-118 (321)
494 PRK07326 short chain dehydroge 53.5 66 0.0014 25.2 6.9 36 77-113 5-43 (237)
495 PRK07677 short chain dehydroge 52.6 48 0.001 26.4 6.0 35 78-113 1-38 (252)
496 PRK08213 gluconate 5-dehydroge 52.5 82 0.0018 25.2 7.4 78 76-157 10-99 (259)
497 cd08277 liver_alcohol_DH_like 52.4 45 0.00098 28.5 6.1 100 73-186 180-285 (365)
498 PRK06125 short chain dehydroge 52.3 77 0.0017 25.4 7.2 78 77-157 6-91 (259)
499 PRK08415 enoyl-(acyl carrier p 52.2 1.3E+02 0.0028 24.6 10.5 106 77-186 4-142 (274)
500 PF05575 V_cholerae_RfbT: Vibr 52.0 15 0.00032 28.0 2.6 58 65-125 69-127 (286)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.91 E-value=7.1e-24 Score=163.21 Aligned_cols=158 Identities=27% Similarity=0.460 Sum_probs=93.7
Q ss_pred ceEEEEecccCCCCcceeechHHHHHHHHhhc------cCcccCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHH
Q 026036 41 MELVIREFAFHQLNANFLWPGTFSFAEWLMHH------REWIERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEI 113 (244)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~------~~~~~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l 113 (244)
..+.+++..... +|..+||++..|++|+... ....++.+|||||||+|..|+.++.. ...+|++||.++ .+
T Consensus 4 ~~l~i~e~~~~~-~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l 81 (173)
T PF10294_consen 4 KTLQIEEDWGDG-TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL 81 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH
T ss_pred cccccccccccC-CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh
Confidence 466777766554 4899999999999999984 56778999999999999999999988 578999999998 55
Q ss_pred HHHHHHhHHhcC--CCCCcceEeeecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 114 EDNIAYNSTTNG--ITPALPHIKHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 114 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+.++.|+..|. ...++....++|++... ....+||+|+++|++|.....+.+.++ +.++++++|.+++.
T Consensus 82 -~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~t---l~~ll~~~~~vl~~-- 155 (173)
T PF10294_consen 82 -ELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRT---LKRLLKPNGKVLLA-- 155 (173)
T ss_dssp -HHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHH---HHHHBTT-TTEEEE--
T ss_pred -HHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHH---HHHHhCCCCEEEEE--
Confidence 89999999987 55677888899987531 123579999999999988777755555 66788898864443
Q ss_pred cccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 189 KNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
++.|... ...|++.++++
T Consensus 156 -------------------~~~R~~~--~~~F~~~~~k~ 173 (173)
T PF10294_consen 156 -------------------YKRRRKS--EQEFFDRLKKH 173 (173)
T ss_dssp -------------------EE-S-TG--GCHHHHHH---
T ss_pred -------------------eCEecHH--HHHHHHHhhhC
Confidence 5555433 57899998864
No 2
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.80 E-value=1.4e-19 Score=145.41 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=76.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...+|.+|||+|||||.++..+++.. ..+|+++|+|++|+ +.++++....+.. ++..+..+. +.+++++++||+|
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~-~i~~v~~da-~~lp~~d~sfD~v 120 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQ-NIEFVQGDA-EDLPFPDNSFDAV 120 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT---SEEEEE-BT-TB--S-TT-EEEE
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCC-CeeEEEcCH-HHhcCCCCceeEE
Confidence 45578899999999999999998765 46899999999998 7787776665542 333433322 4578888999999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-----------------CCCCCCC--Ce-EEEeeeec
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----------------GTEGLPW--PA-FLMSWRRR 211 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-----------------~~~~~~~--~~-~~~~~~~~ 211 (244)
+++..+.+ .++..+.+++++|+|||||++++.......+. +.+...+ +. ++...-.+
T Consensus 121 ~~~fglrn---~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 121 TCSFGLRN---FPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp EEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------
T ss_pred EHHhhHHh---hCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccc
Confidence 99999833 44566999999999999999998844333321 1111111 11 22222233
Q ss_pred cCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 212 IGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
+.. .++|.++|+++||+.++.....+
T Consensus 198 f~~--~~~~~~~l~~~Gf~~v~~~~~~~ 223 (233)
T PF01209_consen 198 FPS--PEELKELLEEAGFKNVEYRPLTF 223 (233)
T ss_dssp ----------------------------
T ss_pred ccc--ccccccccccccccccccccccc
Confidence 433 58899999999999776655443
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=1.3e-18 Score=138.59 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=109.7
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....+|.+|||+|||||-+++.+++.. ..+|+++|+|+.|+ +.+++.....+..+ +..+..+ ++.+|+++.+||+|
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML-~~a~~k~~~~~~~~-i~fv~~d-Ae~LPf~D~sFD~v 123 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESML-EVAREKLKKKGVQN-VEFVVGD-AENLPFPDNSFDAV 123 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHH-HHHHHHhhccCccc-eEEEEec-hhhCCCCCCccCEE
Confidence 333489999999999999999998875 57899999999998 77777666544432 3333322 25688999999999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------------------CCCCCCCCe---EEEeeee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------------------GTEGLPWPA---FLMSWRR 210 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------------------~~~~~~~~~---~~~~~~~ 210 (244)
.++..+.+ .++..++|++++|+|||||++++......... +.+....+. |+.....
T Consensus 124 t~~fglrn---v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~ 200 (238)
T COG2226 124 TISFGLRN---VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIR 200 (238)
T ss_pred Eeeehhhc---CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHH
Confidence 99999933 45666999999999999999988833332221 001000000 1112222
Q ss_pred ccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+++. .+.+.++++++||+.+......
T Consensus 201 ~~p~--~~~l~~~~~~~gf~~i~~~~~~ 226 (238)
T COG2226 201 RFPD--QEELKQMIEKAGFEEVRYENLT 226 (238)
T ss_pred hCCC--HHHHHHHHHhcCceEEeeEeee
Confidence 3333 6888899999999977754443
No 4
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=137.03 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=123.9
Q ss_pred CceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHH
Q 026036 40 EMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~ 118 (244)
+..+.+.|.......|. ++..|+.|+. .....+|||||||+|.+++++|.+. ..+|+++|+++++. +.++
T Consensus 15 ~~~~~I~q~~~~~~~~~----DaiLL~~~~~----~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a-~~A~ 85 (248)
T COG4123 15 FKQFFIIQDRCGFRYGT----DAILLAAFAP----VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAA-EMAQ 85 (248)
T ss_pred ccceEEEeCCCcccccc----HHHHHHhhcc----cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHH-HHHH
Confidence 35666766543322233 8999999964 3346799999999999999999885 58999999999987 8999
Q ss_pred HhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEEEcccccCCcCh---------------HHHHHHHHHHHHhcCCCCc
Q 026036 119 YNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDILLYVKQY---------------SNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~---------------~~l~~~l~~~~~~lk~gG~ 182 (244)
+|+..|.++.++..++.|..+..... ..+||+|+||+++|..... ..+.+.++...++|||||+
T Consensus 86 ~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 86 RNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCE
Confidence 99999999888888776655433322 2369999999998743222 2467888999999999999
Q ss_pred eEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 183 QVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
++++ +++... .++.++|++.+|+.+++.
T Consensus 166 l~~V---------------------~r~erl----~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 166 LAFV---------------------HRPERL----AEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred EEEE---------------------ecHHHH----HHHHHHHHhcCCCceEEE
Confidence 8887 443333 588999999999988764
No 5
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=1.4e-18 Score=142.67 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=114.0
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++-|++..-.+.+.....+.++.+|||||||+|..+..++...+.+|+++|+++.++ +.++.+... ..++..+..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~-~~a~~~~~~---~~~i~~~~~ 106 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMV-NIAKLRNSD---KNKIEFEAN 106 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHH-HHHHHHcCc---CCceEEEEC
Confidence 4555666666666776677778899999999999999988876678999999999987 666654332 122333332
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEe-eeeccCc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS-WRRRIGK 214 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 214 (244)
+.. ..++++++||+|++.++++ |....+..+++++++++|||||++++..+....... ....+... ....+..
T Consensus 107 D~~-~~~~~~~~FD~V~s~~~l~-h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~----~~~~~~~~~~~~~~~~ 180 (263)
T PTZ00098 107 DIL-KKDFPENTFDMIYSRDAIL-HLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN----WDEEFKAYIKKRKYTL 180 (263)
T ss_pred Ccc-cCCCCCCCeEEEEEhhhHH-hCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC----cHHHHHHHHHhcCCCC
Confidence 222 2345567899999999883 444446779999999999999999987443221100 00000000 0001111
Q ss_pred cchhhHHHHHhhcCCeEEEecc
Q 026036 215 EDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+..++.++++++||+++...+
T Consensus 181 ~~~~~~~~~l~~aGF~~v~~~d 202 (263)
T PTZ00098 181 IPIQEYGDLIKSCNFQNVVAKD 202 (263)
T ss_pred CCHHHHHHHHHHCCCCeeeEEe
Confidence 2357899999999999887654
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.78 E-value=1.2e-17 Score=141.92 Aligned_cols=167 Identities=10% Similarity=0.071 Sum_probs=111.6
Q ss_pred HHHHHHHhhccCc-----ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 63 FSFAEWLMHHREW-----IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 63 ~~l~~~~~~~~~~-----~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+.+.+.+.... .++.+|||||||+|.++..+++..+.+|+|+|+++.++ +.++++...+++..++..+..+.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i-~~a~~~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQA-ARANALAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEcCc
Confidence 3444444444333 57789999999999999999987788999999999987 77777777666644444444443
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCCCCe-----EEEeee
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPA-----FLMSWR 209 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~ 209 (244)
. .+++.+++||+|++..++++. ++..+.+++++++|||||++++......... ......... ....+.
T Consensus 178 ~-~~~~~~~~FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 253 (340)
T PLN02244 178 L-NQPFEDGQFDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYL 253 (340)
T ss_pred c-cCCCCCCCccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccC
Confidence 2 345667899999999998443 3455899999999999999998743221111 000000000 000011
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+.+. +..++.++++++||+++++.+
T Consensus 254 p~~~--s~~~~~~~l~~aGf~~v~~~d 278 (340)
T PLN02244 254 PAWC--STSDYVKLAESLGLQDIKTED 278 (340)
T ss_pred CCCC--CHHHHHHHHHHCCCCeeEeee
Confidence 1222 257999999999999887654
No 7
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.78 E-value=4.9e-18 Score=141.62 Aligned_cols=198 Identities=10% Similarity=0.015 Sum_probs=115.7
Q ss_pred cccccceeeeecccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEE
Q 026036 25 METCNGYVERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDIT 104 (244)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~ 104 (244)
.......++....+...++.+.++... .-|-+...+.+ +..+....+|++|||+|||+|.++..++..+...|+
T Consensus 75 ~~~l~~~l~~l~p~~~~~~~l~~~~~~-----~e~~s~~~~~~-~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~ 148 (314)
T TIGR00452 75 IKRILEEIMALMPWRKGPFELSGIKID-----SEWRSDIKWDR-VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLV 148 (314)
T ss_pred HHHHHHHHHhcCCCCCCCcccccccCC-----HHHHHHHHHHH-HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEE
Confidence 334455555566666677777765321 12223322222 333445567899999999999999888877666899
Q ss_pred EEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 105 TSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 105 ~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
|+|.|+.|+.. ++..........++.....+.. .++. ..+||+|+|+.++||.. +....++++++.|||||.++
T Consensus 149 GiDpS~~ml~q-~~~~~~~~~~~~~v~~~~~~ie-~lp~-~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 149 GIDPTVLFLCQ-FEAVRKLLDNDKRAILEPLGIE-QLHE-LYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELV 222 (314)
T ss_pred EEcCCHHHHHH-HHHHHHHhccCCCeEEEECCHH-HCCC-CCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEE
Confidence 99999988632 2211111011112222222222 2222 24799999999996643 44589999999999999999
Q ss_pred eecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 185 GHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+...+............+ ...+..+...+...+...++++||+.+++.
T Consensus 223 letl~i~g~~~~~l~p~~ry-~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 223 LETLVIDGDLNTVLVPKDRY-AKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred EEEEEecCccccccCchHHH-HhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 87443322111110000000 000001111235788899999999988764
No 8
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.76 E-value=3.1e-18 Score=140.53 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=110.7
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+-....+.+.+...+.+|.+|||||||.|.+++.+++..+++|+++.+|++.. +.+++.+...++++++.....++.+.
T Consensus 46 AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~-~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 46 AQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQA-EYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEEeecccc
Confidence 44566677888888899999999999999999999999899999999999986 88888888888876666655555432
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC-CCeEEEe---eeeccCccc
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP-WPAFLMS---WRRRIGKED 216 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~ 216 (244)
..+||.|++..++ .|.........++.+.+.|||||++++............... ...|+.. .....+ +
T Consensus 125 ----~~~fD~IvSi~~~-Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lp--s 197 (273)
T PF02353_consen 125 ----PGKFDRIVSIEMF-EHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLP--S 197 (273)
T ss_dssp ------S-SEEEEESEG-GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS-----B
T ss_pred ----CCCCCEEEEEech-hhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCC--C
Confidence 2389999999998 655557778999999999999999988733332211111000 0011111 111222 2
Q ss_pred hhhHHHHHhhcCCeEEEecc
Q 026036 217 ETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...+...+++.||++.++..
T Consensus 198 ~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 198 LSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp HHHHHHHHHHTT-EEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEEE
Confidence 46777889999999988753
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=5.3e-18 Score=142.01 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=104.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||||||+|.++..+++. +.+|+|+|++++++ +.++.+...+....++..+..+. +.++..+++||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~da-e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTA-EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCH-HHhhhccCCCCEEEEhh
Confidence 46779999999999999988865 78999999999997 77776655443322333332222 23344567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCC--CeEEEee-eeccCccchhhHHHHHhhcCCe
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPW--PAFLMSW-RRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
++++.. +....++++.++|||||.+++.+....... ....... ..|.... ..+....+.+++.++++++||+
T Consensus 207 vLeHv~---d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~ 283 (322)
T PLN02396 207 VIEHVA---NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVD 283 (322)
T ss_pred HHHhcC---CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCe
Confidence 994433 344899999999999999998854332100 0000000 0000000 0111112368999999999999
Q ss_pred EEEeccEEEE
Q 026036 231 VKHLGSRVYC 240 (244)
Q Consensus 231 v~~~~~~~~~ 240 (244)
+..+....|.
T Consensus 284 i~~~~G~~~~ 293 (322)
T PLN02396 284 VKEMAGFVYN 293 (322)
T ss_pred EEEEeeeEEc
Confidence 9998766654
No 10
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.9e-17 Score=134.25 Aligned_cols=164 Identities=13% Similarity=0.177 Sum_probs=123.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
-..-.+.+.....+.+|.+|||||||.|.+++.+|+..+.+|+|+++|+++. +.+++.+..-+++.++..+-.+|.+.
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~- 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDF- 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEecccccc-
Confidence 3344466777888899999999999999999999999899999999999997 88888888888866666666666543
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEe---eeeccCccchh
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMS---WRRRIGKEDET 218 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 218 (244)
.++||-|++..++ +|-..+.....++.+.+.|+|||++++.+....+.... ..+.|+.. ..-..+ +.+
T Consensus 135 ---~e~fDrIvSvgmf-Ehvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~yiFPgG~lP--s~~ 205 (283)
T COG2230 135 ---EEPFDRIVSVGMF-EHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDKYIFPGGELP--SIS 205 (283)
T ss_pred ---ccccceeeehhhH-HHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHHhCCCCCcCC--CHH
Confidence 3459999999998 76666778899999999999999998885444432221 11122211 112222 246
Q ss_pred hHHHHHhhcCCeEEEecc
Q 026036 219 IFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~~ 236 (244)
.+.+..+++||.+.+...
T Consensus 206 ~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 206 EILELASEAGFVVLDVES 223 (283)
T ss_pred HHHHHHHhcCcEEehHhh
Confidence 777889999999987653
No 11
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=3.8e-17 Score=137.56 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=104.0
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
-|++...... +..+....+|++|||||||+|..+..++..+..+|+|+|.|+.++ ...+......+...++..+..+.
T Consensus 104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l-~q~~a~~~~~~~~~~i~~~~~d~ 181 (322)
T PRK15068 104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFL-CQFEAVRKLLGNDQRAHLLPLGI 181 (322)
T ss_pred eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHHHHhcCCCCCeEEEeCCH
Confidence 4555444333 233344457899999999999999999888767799999999876 22221111111112233333333
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+.++. .++||+|+|..++||.. +....++++++.|+|||.+++..................+ ...+..+...+.
T Consensus 182 -e~lp~-~~~FD~V~s~~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y-~~~~~~~~lps~ 255 (322)
T PRK15068 182 -EQLPA-LKAFDTVFSMGVLYHRR---SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRY-AKMRNVYFIPSV 255 (322)
T ss_pred -HHCCC-cCCcCEEEECChhhccC---CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHH-hcCccceeCCCH
Confidence 23344 57899999999996543 3448999999999999999886432222111110000000 001111111245
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
..+..+|+++||+.+++.+
T Consensus 256 ~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 256 PALKNWLERAGFKDVRIVD 274 (322)
T ss_pred HHHHHHHHHcCCceEEEEe
Confidence 7899999999999887753
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=1.2e-17 Score=119.57 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=83.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
|+.+|||||||+|.+++.+++. .+.+|+++|+|++++ +.++++........++..+..++ .......++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEML-EIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 5789999999999999999984 588999999999997 88888886666656666665555 21223345799999998
Q ss_pred -cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 -ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 -~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+....+...+.++++.+.|+|||++++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 4422223366779999999999999998875
No 13
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.75 E-value=3.1e-17 Score=126.17 Aligned_cols=119 Identities=21% Similarity=0.287 Sum_probs=88.9
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+++..|++++... ++.+|||+|||+|.+++.+++.... +|+++|+++.++ +.+++|...|++.. +..+..++.
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n~~~n~~~~-v~~~~~d~~ 91 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRNAERNGLEN-VEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHHHHHTTCTT-EEEEESSTT
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHhcCccc-ccccccccc
Confidence 4667777777654 6679999999999999999988644 799999999987 89999999998854 444444443
Q ss_pred CCCCCCCCCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAFPIPNPDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~~~~~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+ .++||+|++|.+++.... ...+.+.++...+.|||||+++++
T Consensus 92 ~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 92 EALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp TTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 3322 578999999999733221 124568899999999999998775
No 14
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.74 E-value=1.5e-16 Score=123.40 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+++. ..++.+|||+|||+|.++..++..+. +|+++|++++++ +.+++|...++. .+..+..++.+
T Consensus 7 d~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~-~~a~~~~~~~~~--~~~~~~~d~~~- 77 (179)
T TIGR00537 7 DSLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAV-KELRENAKLNNV--GLDVVMTDLFK- 77 (179)
T ss_pred cHHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEccccc-
Confidence 4555555543 34567999999999999999988754 999999999987 888888877665 23333333322
Q ss_pred CCCCCCCccEEEEcccccCCcC------------------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC
Q 026036 141 FPIPNPDWDLILASDILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP 202 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~ 202 (244)
...++||+|+++.+++.... .....+.++++.+.|||||++++....
T Consensus 78 --~~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~------------- 142 (179)
T TIGR00537 78 --GVRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS------------- 142 (179)
T ss_pred --ccCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec-------------
Confidence 23458999999988632211 112457789999999999988775211
Q ss_pred eEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEEE
Q 026036 203 AFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYC 240 (244)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 240 (244)
... ...+.+.+++.||+++.+.+....
T Consensus 143 --------~~~---~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 143 --------LNG---EPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred --------cCC---hHHHHHHHHhCCCeEEEEEEeecC
Confidence 111 368889999999999988766543
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=3.5e-17 Score=133.96 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=102.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|..+..++.. +.+|+++|+|++|+ +.++++....++..++..+..+..+..+..+++||+|++.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 5679999999999999999886 78999999999997 788887776665444444443333322344578999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------CCCCCCCCeEE----EeeeeccCccchhhHHHHHhh
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFL----MSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+++.. +...+++++.++|||||++++..+...... ........... ....+... .+.+++.+++++
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~l~~~l~~ 197 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYP-LDPEQVYQWLEE 197 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCC-CCHHHHHHHHHH
Confidence 84432 334889999999999999987743322100 00000000000 00111111 235789999999
Q ss_pred cCCeEEEecc
Q 026036 227 AGLEVKHLGS 236 (244)
Q Consensus 227 ~Gf~v~~~~~ 236 (244)
+||+++.+..
T Consensus 198 aGf~~~~~~g 207 (255)
T PRK11036 198 AGWQIMGKTG 207 (255)
T ss_pred CCCeEeeeee
Confidence 9999986543
No 16
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.2e-16 Score=130.71 Aligned_cols=143 Identities=22% Similarity=0.241 Sum_probs=106.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
|.+..-.+++.+... +|.+|||+|||||.+++++++.+..+|+|+|+++.++ +.++.|+..|+++. .+.....+
T Consensus 147 pTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV-~aa~eNa~~N~v~~---~~~~~~~~ 220 (300)
T COG2264 147 PTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAV-EAARENARLNGVEL---LVQAKGFL 220 (300)
T ss_pred hhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHH-HHHHHHHHHcCCch---hhhccccc
Confidence 444444455554443 8899999999999999999999888899999999987 89999999999853 12222333
Q ss_pred CCCCCC-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchh
Q 026036 140 AFPIPN-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 218 (244)
Q Consensus 140 ~~~~~~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
...... ++||+|++|= + ...+..+...+.+.+||||+++++ - ...+..+
T Consensus 221 ~~~~~~~~~~DvIVANI-L-----A~vl~~La~~~~~~lkpgg~lIlS---------------------G---Il~~q~~ 270 (300)
T COG2264 221 LLEVPENGPFDVIVANI-L-----AEVLVELAPDIKRLLKPGGRLILS---------------------G---ILEDQAE 270 (300)
T ss_pred chhhcccCcccEEEehh-h-----HHHHHHHHHHHHHHcCCCceEEEE---------------------e---ehHhHHH
Confidence 333333 5899999853 4 566778899999999999998876 0 0011136
Q ss_pred hHHHHHhhcCCeEEEeccEE
Q 026036 219 IFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~~~~ 238 (244)
.+.+.+++.||+++.+..+.
T Consensus 271 ~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 271 SVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred HHHHHHHhCCCeEeEEEecC
Confidence 77888999999998876543
No 17
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.73 E-value=1.5e-16 Score=130.48 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=100.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHh--cCCCCCcceEeeecCCCCCCCCCCc
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTT--NGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
....++.+|||+|||+|.++..+++.. ..+|+|+|+|++|+ +.++++... .....++..+..+. ..+++.+++|
T Consensus 69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml-~~A~~r~~~~~~~~~~~i~~~~~d~-~~lp~~~~sf 146 (261)
T PLN02233 69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQL-AVAASRQELKAKSCYKNIEWIEGDA-TDLPFDDCYF 146 (261)
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhhhhccCCCeEEEEccc-ccCCCCCCCE
Confidence 344578899999999999999888764 35899999999998 666544321 11111233333332 3456777899
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCC---CCC---CCe---E--------EEeee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTE---GLP---WPA---F--------LMSWR 209 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~---~~~---~~~---~--------~~~~~ 209 (244)
|+|+++.++.+. ++..+++++++++|||||++++......... ... ... .+. + +....
T Consensus 147 D~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 147 DAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred eEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 999999998433 3556999999999999999988844432211 000 000 000 0 00000
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.++. +.+++.++++++||+......
T Consensus 224 ~~f~--s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 224 NEYL--TGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HhcC--CHHHHHHHHHHCCCCEEEEEE
Confidence 1222 368899999999999776543
No 18
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.72 E-value=2.7e-17 Score=129.11 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=103.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||+|||-|.++..+|+. +++|+|+|++++++ +.++..+..+++. +....... +.+....++||+|+|..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I-~~Ak~ha~e~gv~--i~y~~~~~-edl~~~~~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPI-EVAKLHALESGVN--IDYRQATV-EDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHH-HHHHHhhhhcccc--ccchhhhH-HHHHhcCCCccEEEEhh
Confidence 58999999999999999999987 69999999999988 8888888877772 11211111 11222237999999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC--CCCCCCe--EE--Eeee-eccCccchhhHHHHHhhcC
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--EGLPWPA--FL--MSWR-RRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~--~~~~~~~--~~--~~~~-~~~~~~~~~~~~~~l~~~G 228 (244)
|+ .| .++....++.+.+++||||.+++++.+....... ....... |. ..|. +.+.. .+++...+...|
T Consensus 133 Vl-EH--v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~ir--p~El~~~~~~~~ 207 (243)
T COG2227 133 VL-EH--VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIK--PAELIRWLLGAN 207 (243)
T ss_pred HH-Hc--cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcC--HHHHHHhcccCC
Confidence 99 44 3444489999999999999999985543211000 0000000 00 0011 12222 366777777889
Q ss_pred CeEEEeccEEEE
Q 026036 229 LEVKHLGSRVYC 240 (244)
Q Consensus 229 f~v~~~~~~~~~ 240 (244)
+++.+.....|.
T Consensus 208 ~~~~~~~g~~y~ 219 (243)
T COG2227 208 LKIIDRKGLTYN 219 (243)
T ss_pred ceEEeecceEec
Confidence 999888776654
No 19
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.72 E-value=1.1e-16 Score=136.60 Aligned_cols=201 Identities=14% Similarity=0.147 Sum_probs=138.0
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREW 75 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~ 75 (244)
++++.++.+++...+...++ +....+...++|+....+..+.+....+++. +.....|.++.+.+.+.....
T Consensus 173 ~~l~~~r~~l~~~~~~~l~~-~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~aL~~l~- 250 (423)
T PRK14966 173 YASEYTRVQLLTRGGEEMPD-EVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP- 250 (423)
T ss_pred HHHCcCHHHHhhCCcccCCH-HHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHHhhhccC-
Confidence 45667788888887777776 4556677777777666667777777665543 124456778899998876543
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..++. ++..+..++.+......++||+|+||
T Consensus 251 -~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~AL-e~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 251 -ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPAL-ETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred -CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEEC
Confidence 55699999999999999988764 67999999999998 889999887664 34455545433211123479999998
Q ss_pred ccccCCcCh-----------------------HHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeec
Q 026036 155 DILLYVKQY-----------------------SNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 211 (244)
Q Consensus 155 ~~l~~~~~~-----------------------~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
.+. ..... ....+.++.+.+.|+|||.+++.+ .
T Consensus 327 PPY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-----------------------G 382 (423)
T PRK14966 327 PPY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-----------------------G 382 (423)
T ss_pred CCC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-----------------------C
Confidence 874 22110 112366677778999999766531 1
Q ss_pred cCccchhhHHHHHhhcCCeEEEe
Q 026036 212 IGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 212 ~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. ...+.+.+++++.||....+
T Consensus 383 ~--~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 F--DQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred c--cHHHHHHHHHHHCCCcEEEE
Confidence 1 12367788888899875544
No 20
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=9.8e-18 Score=122.79 Aligned_cols=156 Identities=20% Similarity=0.356 Sum_probs=114.4
Q ss_pred CCCcceeechHHHHHHHHhhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCC-
Q 026036 52 QLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITP- 128 (244)
Q Consensus 52 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~- 128 (244)
.++...+||+.+.|+.+++..+....|.+|||||.| +|+.++++|... ...|..+|-+++.+ ++.++-...|..+.
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-rnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-RNVEKIRNSNMASSL 82 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-HHHHHHHhccccccc
Confidence 344478999999999999999999999999999999 777788887665 67799999999987 77776555553321
Q ss_pred -CcceEeee-cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEE
Q 026036 129 -ALPHIKHS-WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLM 206 (244)
Q Consensus 129 -~~~~~~~~-~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (244)
++..+... |++........||.|+++||+|+.+...+|+++ +...|+|.|+-++
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdt---Ik~lL~p~g~Al~--------------------- 138 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDT---IKSLLRPSGRALL--------------------- 138 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHH---HHHHhCcccceeE---------------------
Confidence 22222222 333333444589999999999988877755555 6778899997333
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
..||++ .+.+.|.+.++..||.+...
T Consensus 139 -fsPRRg-~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 139 -FSPRRG-QSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred -ecCccc-chHHHHHHHHHhceeEEEec
Confidence 223333 24589999999999988754
No 21
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.70 E-value=3.8e-16 Score=128.88 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=101.2
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
|.+....+++.+.. .+|++|||+|||||.+++++++.+..+|+|+|+++.++ +.++.|+..|++..++... .
T Consensus 146 ~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-~~a~~N~~~N~~~~~~~v~-----~ 217 (295)
T PF06325_consen 146 PTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-EAARENAELNGVEDRIEVS-----L 217 (295)
T ss_dssp HHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-HHHHHHHHHTT-TTCEEES-----C
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-HHHHHHHHHcCCCeeEEEE-----E
Confidence 45555556666553 47889999999999999999998888999999999987 8999999999996644221 1
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
......++||+|++|=. .+.+...+..+.+.++|||.++++ ---. ...+.
T Consensus 218 ~~~~~~~~~dlvvANI~------~~vL~~l~~~~~~~l~~~G~lIlS---------------------GIl~---~~~~~ 267 (295)
T PF06325_consen 218 SEDLVEGKFDLVVANIL------ADVLLELAPDIASLLKPGGYLILS---------------------GILE---EQEDE 267 (295)
T ss_dssp TSCTCCS-EEEEEEES-------HHHHHHHHHHCHHHEEEEEEEEEE---------------------EEEG---GGHHH
T ss_pred ecccccccCCEEEECCC------HHHHHHHHHHHHHhhCCCCEEEEc---------------------cccH---HHHHH
Confidence 22223478999998633 467778889999999999988876 1111 22467
Q ss_pred HHHHHhhcCCeEEEeccE
Q 026036 220 FFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~~~ 237 (244)
+.+.+++ ||++.+...+
T Consensus 268 v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 268 VIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp HHHHHHT-TEEEEEEEEE
T ss_pred HHHHHHC-CCEEEEEEEE
Confidence 7778876 9998876543
No 22
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.70 E-value=2.1e-16 Score=140.46 Aligned_cols=166 Identities=11% Similarity=0.170 Sum_probs=107.5
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+.+..-.+.+.+.....++.+|||||||+|.+++.++...+.+|+|+|+|+.++ +.++++... ...++..+..++.+
T Consensus 249 ~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~~--~~~~v~~~~~d~~~ 325 (475)
T PLN02336 249 TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAIG--RKCSVEFEVADCTK 325 (475)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhhc--CCCceEEEEcCccc
Confidence 333333344444444457789999999999999999887788999999999987 677666542 22233333333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhh
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
.++++++||+|++.+++++.. +..+.++++++.|||||++++..+......... ....++.... ....+.+.
T Consensus 326 -~~~~~~~fD~I~s~~~l~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~~g--~~~~~~~~ 397 (475)
T PLN02336 326 -KTYPDNSFDVIYSRDTILHIQ---DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP--EFAEYIKQRG--YDLHDVQA 397 (475)
T ss_pred -CCCCCCCEEEEEECCcccccC---CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH--HHHHHHHhcC--CCCCCHHH
Confidence 344567899999999994443 445899999999999999988754332211000 0000110111 11223578
Q ss_pred HHHHHhhcCCeEEEecc
Q 026036 220 FFTSCENAGLEVKHLGS 236 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~~ 236 (244)
+.++++++||++..+.+
T Consensus 398 ~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 398 YGQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHHCCCeeeeeec
Confidence 89999999999887654
No 23
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.70 E-value=4.4e-16 Score=126.54 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=105.9
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHH--HHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIED--NIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 136 (244)
|.+.....+ +..+....+|++|||||||+|..+..++..++..|+|+|.+...+.. .+++-+. .. .....+.
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg---~~--~~~~~lp 171 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG---QD--PPVFELP 171 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC---CC--ccEEEcC
Confidence 445444444 33344467999999999999999999998888889999998853322 2222211 11 1112221
Q ss_pred cC-CCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 137 WG-DAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 137 ~~-~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
.+ +.++. .+.||+|+|..|+||..+ ....|+++...|++||.+++-+...+........+...+- ..+.-+...
T Consensus 172 lgvE~Lp~-~~~FDtVF~MGVLYHrr~---Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-~m~nv~FiP 246 (315)
T PF08003_consen 172 LGVEDLPN-LGAFDTVFSMGVLYHRRS---PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-KMRNVWFIP 246 (315)
T ss_pred cchhhccc-cCCcCEEEEeeehhccCC---HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-CCCceEEeC
Confidence 11 34454 678999999999977543 3489999999999999999885544443322221211111 111112224
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+...+..+|+++||+.+++-
T Consensus 247 s~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 247 SVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred CHHHHHHHHHHcCCceEEEe
Confidence 57889999999999877654
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=1.3e-15 Score=119.92 Aligned_cols=106 Identities=17% Similarity=0.318 Sum_probs=80.3
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..+..+++. +.+|+++|+|+.++ +.++++...++++ .+..+..+..+ .+. .++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i-~~a~~~~~~~~~~-~v~~~~~d~~~-~~~-~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSI-ANLERIKAAENLD-NLHTAVVDLNN-LTF-DGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-cceEEecChhh-CCc-CCCcCEEEEe
Confidence 346689999999999999999886 67999999999987 7777777766652 23333333322 222 3579999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++ ++.....+...++++.+.|||||.+++.
T Consensus 103 ~~~-~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 103 VVL-MFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cch-hhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 998 4444556779999999999999996654
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.68 E-value=2.4e-15 Score=116.86 Aligned_cols=123 Identities=19% Similarity=0.223 Sum_probs=92.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|..++.+++.. +.+|+++|+++.++ +.++++...+++++ +..+..+..+ ... .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l-~~A~~~~~~~~l~~-i~~~~~d~~~-~~~-~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKI-AFLREVAAELGLKN-VTVVHGRAEE-FGQ-EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHcCCCC-EEEEeccHhh-CCC-CCCccEEEEcc
Confidence 47899999999999999888654 68999999999987 88888888887743 4444444333 233 56899999964
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
. .++...++.+++.|||||++++.. ... ....+.++.+..|+.+..+.
T Consensus 121 ~-------~~~~~~l~~~~~~LkpGG~lv~~~---------------------~~~----~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 V-------ASLSDLVELCLPLLKPGGRFLALK---------------------GRD----PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred c-------cCHHHHHHHHHHhcCCCeEEEEEe---------------------CCC----hHHHHHHHHHhcCceEeeeE
Confidence 2 234588899999999999887751 111 13577888888899877664
No 26
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.68 E-value=2.1e-16 Score=140.42 Aligned_cols=204 Identities=14% Similarity=0.184 Sum_probs=136.6
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCCC------cceeechHHHHHHHHhhccC-
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQLN------ANFLWPGTFSFAEWLMHHRE- 74 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~w~~~~~l~~~~~~~~~- 74 (244)
+++++++..++...+...++ +....+...++|+....+..+.+.+..+++.. -....|.++.|+++++....
T Consensus 34 ~~l~~~~~~l~~~~~~~l~~-~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~ 112 (506)
T PRK01544 34 HVINKPIEYLLINLDEQLNE-AEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSR 112 (506)
T ss_pred HHHCcCHHHHhhccCCCCCH-HHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhh
Confidence 45667777888777766666 44555666667765544455555555444321 36678889999999865421
Q ss_pred -----------------------cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 75 -----------------------WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 75 -----------------------~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
..++.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..+++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al-~~A~~N~~~~~l~~~v 191 (506)
T PRK01544 113 ESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAI-EVAKSNAIKYEVTDRI 191 (506)
T ss_pred ccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHH-HHHHHHHHHcCCccce
Confidence 1134689999999999999888765 67999999999987 8899998888775555
Q ss_pred ceEeeecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 131 PHIKHSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
..+..++.+.. ..++||+|+++.+...... .....+.++.+.+.|+|||.+++.+
T Consensus 192 ~~~~~D~~~~~--~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 192 QIIHSNWFENI--EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred eeeecchhhhC--cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 55544443322 2457999999876432111 0123356678889999999877641
Q ss_pred ccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 188 TKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. . ...+.+.+++++.||..+.+
T Consensus 270 g-----------------------~--~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 270 G-----------------------F--KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred C-----------------------C--chHHHHHHHHHhcCCCceEE
Confidence 0 1 11356677888888875543
No 27
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.67 E-value=2.1e-15 Score=128.60 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CC
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PN 145 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 145 (244)
+++++.+...+.+|||||||+|.+++.+++.. ..+|+++|+|+.++ +.+++|...|.... ...+.+.+.+.+.. ..
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av-~~A~~N~~~n~~~~-~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAV-ASSRLNVETNMPEA-LDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCccc-CceEEEEEccccccCCC
Confidence 34444433345699999999999999998876 67999999999987 88999988876421 22345555554432 23
Q ss_pred CCccEEEEcccccCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+||+|+||.+++... ......++++.+.+.|+|||.++++
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5899999998874321 1233458889999999999998887
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.67 E-value=3.2e-16 Score=108.31 Aligned_cols=95 Identities=19% Similarity=0.376 Sum_probs=72.6
Q ss_pred EEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCc
Q 026036 82 IELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVK 161 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~ 161 (244)
||+|||+|..+..+++..+.+|+++|++++++ +.++++....+. ..+..+. ..+++++++||+|+++.++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~-~~~~~~~~~~~~----~~~~~d~-~~l~~~~~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEML-EQARKRLKNEGV----SFRQGDA-EDLPFPDNSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHH-HHHHHHTTTSTE----EEEESBT-TSSSS-TT-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHH-HHHHhcccccCc----hheeehH-HhCccccccccccccccceeec-
Confidence 89999999999999887688999999999987 677766554433 2333333 4458888999999999999443
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEe
Q 026036 162 QYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 162 ~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
++..+.++++.|+|||||++++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 6677999999999999998764
No 29
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.67 E-value=1.4e-16 Score=120.63 Aligned_cols=130 Identities=22% Similarity=0.381 Sum_probs=102.8
Q ss_pred EEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc
Q 026036 45 IREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN 124 (244)
Q Consensus 45 ~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~ 124 (244)
++.....+.++.+.|.+++.+++|+..++...+|++|||+|+|+|+.+++.++.+...|+++|+.+... .+++.|+..|
T Consensus 47 l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~an 125 (218)
T COG3897 47 LRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAAN 125 (218)
T ss_pred HHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhc
Confidence 444445555688999999999999999999999999999999999999999999889999999998765 8999999999
Q ss_pred CCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 125 GITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
+. .+.+...+... .++.||+|+..|++|.+.... +.+. ....|+..|..++
T Consensus 126 gv-----~i~~~~~d~~g-~~~~~Dl~LagDlfy~~~~a~---~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 126 GV-----SILFTHADLIG-SPPAFDLLLAGDLFYNHTEAD---RLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cc-----eeEEeeccccC-CCcceeEEEeeceecCchHHH---HHHH-HHHHHHhCCCEEE
Confidence 87 33333334444 567899999999998876655 5555 4444555555444
No 30
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.66 E-value=2.6e-16 Score=124.53 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=98.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-Ccce-EeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPH-IKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.|.+|||+|||+|+++..+|+. +++|+|+|++++|+ +.++.....+.... .+.. +.+...+ .....+.||.|+|+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~-~E~~~~~fDaVvcs 165 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTD-VEGLTGKFDAVVCS 165 (282)
T ss_pred CCceEEEeccCccccchhhHhh-CCeeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcc-hhhcccccceeeeH
Confidence 3588999999999999999987 79999999999998 77766544332211 1111 1121111 12223469999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccC--CCCCCCCCCCe-EEEeeee--ccCccchhhHHHHHhhcCC
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ--GEGTEGLPWPA-FLMSWRR--RIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~Gf 229 (244)
.++ ++..++...+..+.+.|||||++++++..-.- .-...+..+-. -+.+... +-..-+..+...+++..++
T Consensus 166 evl---eHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVL---EHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHH---HHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999 33556679999999999999999998332211 00111100000 0011110 0001124666778888999
Q ss_pred eEEEeccEEEE
Q 026036 230 EVKHLGSRVYC 240 (244)
Q Consensus 230 ~v~~~~~~~~~ 240 (244)
.+..+...+|.
T Consensus 243 ~v~~v~G~~y~ 253 (282)
T KOG1270|consen 243 QVNDVVGEVYN 253 (282)
T ss_pred chhhhhccccc
Confidence 99988766654
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.66 E-value=1.2e-15 Score=126.18 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=100.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|..++.+++.. ..+|+++|+++.++ +.++++....+.. ++..+..+. +.+++.+++||+|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~-~v~~~~~d~-~~l~~~~~~fD~V 150 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYT-NVEFRLGEI-EALPVADNSVDVI 150 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCC-CEEEEEcch-hhCCCCCCceeEE
Confidence 34578999999999999888776654 34799999999997 7788877666552 333333333 2345556789999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+++.++++. ++..+++++++++|||||++++......................+.... .+..++.++++++||..
T Consensus 151 i~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 151 ISNCVINLS---PDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGA--LQEEEYLAMLAEAGFVD 225 (272)
T ss_pred EEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCC--CCHHHHHHHHHHCCCCc
Confidence 999887433 3445899999999999999988733221111000000000111111111 23578899999999998
Q ss_pred EEec
Q 026036 232 KHLG 235 (244)
Q Consensus 232 ~~~~ 235 (244)
.++.
T Consensus 226 v~i~ 229 (272)
T PRK11873 226 ITIQ 229 (272)
T ss_pred eEEE
Confidence 7664
No 32
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=4e-15 Score=121.81 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=95.2
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+|||||||+|.++..++... +.+|+|+|+|+.|+ +.++++ ++ ..+..+..+ +. ..++||+|
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~-~~a~~~----~~----~~~~~d~~~-~~-~~~~fD~v 93 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMV-AAARER----GV----DARTGDVRD-WK-PKPDTDVV 93 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHhc----CC----cEEEcChhh-CC-CCCCceEE
Confidence 444577899999999999999998875 67899999999987 555432 22 233333222 21 34689999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-C----CCC--CCCCeE--EEeeeeccCccchhhHHH
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-G----TEG--LPWPAF--LMSWRRRIGKEDETIFFT 222 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~----~~~--~~~~~~--~~~~~~~~~~~~~~~~~~ 222 (244)
+++.+++ +. ++..+.++++++.|||||++++.+....... . ... ..+... ...++......+...+.+
T Consensus 94 ~~~~~l~-~~--~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 94 VSNAALQ-WV--PEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred EEehhhh-hC--CCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 9999984 42 3445899999999999999988754321110 0 000 000000 001111111124688999
Q ss_pred HHhhcCCeEEEec
Q 026036 223 SCENAGLEVKHLG 235 (244)
Q Consensus 223 ~l~~~Gf~v~~~~ 235 (244)
+++++||++....
T Consensus 171 ~l~~aGf~v~~~~ 183 (255)
T PRK14103 171 LLTDAGCKVDAWE 183 (255)
T ss_pred HHHhCCCeEEEEe
Confidence 9999999876544
No 33
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=7.7e-17 Score=122.50 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=91.3
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++.. +.+|+++|+++.++ +. . .. ....... .......++||+|+|+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~-~~------~-~~----~~~~~~~-~~~~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMI-EK------R-NV----VFDNFDA-QDPPFPDGSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHH-HH------T-TS----EEEEEEC-HTHHCHSSSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHH-hh------h-hh----hhhhhhh-hhhhccccchhhHhhH
Confidence 457789999999999999999766 66999999999886 33 1 11 1111111 1222345689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC----CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE----GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++++. ++...+++.+.++|||||.+++.++...... .......+ ...+...+ +.+++.++++++||+
T Consensus 86 ~~l~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 86 DVLEHL---PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRP--YGGHVHFF---SPDELRQLLEQAGFE 157 (161)
T ss_dssp SSGGGS---SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCH--HTTTTEEB---BHHHHHHHHHHTTEE
T ss_pred HHHhhc---ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCc--cCceeccC---CHHHHHHHHHHCCCE
Confidence 999443 3566999999999999999999866542100 00000000 00111222 358999999999999
Q ss_pred EEE
Q 026036 231 VKH 233 (244)
Q Consensus 231 v~~ 233 (244)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 34
>PRK14968 putative methyltransferase; Provisional
Probab=99.66 E-value=7.9e-15 Score=114.45 Aligned_cols=150 Identities=19% Similarity=0.223 Sum_probs=106.5
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cceEeee
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~ 136 (244)
.++.+..+.+++.. .++.+|||+|||+|..+..++.. +.+|+++|++++++ +.++++...++...+ +..+..+
T Consensus 8 p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~~d 81 (188)
T PRK14968 8 PAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAV-ECAKCNAKLNNIRNNGVEVIRSD 81 (188)
T ss_pred cchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHH-HHHHHHHHHcCCCCcceEEEecc
Confidence 45567777777643 46789999999999999999887 78999999999987 788888877766332 3344444
Q ss_pred cCCCCCCCCCCccEEEEcccccCCc------------------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCC
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVK------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEG 198 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~------------------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~ 198 (244)
+.+. ....+||+|+++.+++... ....+...++++.+.|||||.+++..+..
T Consensus 82 ~~~~--~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-------- 151 (188)
T PRK14968 82 LFEP--FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-------- 151 (188)
T ss_pred cccc--ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------
Confidence 4332 2234799999988763311 02234578899999999999877652111
Q ss_pred CCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 199 LPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
. ..+.+.+++++.||++..+....+
T Consensus 152 -------------~---~~~~l~~~~~~~g~~~~~~~~~~~ 176 (188)
T PRK14968 152 -------------T---GEDEVLEYLEKLGFEAEVVAEEKF 176 (188)
T ss_pred -------------C---CHHHHHHHHHHCCCeeeeeeeccc
Confidence 1 135778899999999887765443
No 35
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.66 E-value=1.1e-14 Score=118.78 Aligned_cols=138 Identities=21% Similarity=0.246 Sum_probs=99.8
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..+.+..+.+.+... ..++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...+++... +.+..
T Consensus 102 ~h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~~~---~~~~~ 175 (250)
T PRK00517 102 THPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVELN---VYLPQ 175 (250)
T ss_pred CCHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCce---EEEcc
Confidence 355566666666543 247889999999999999988776666799999999987 888889888876321 22211
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+ +.+||+|+++-. ...+...++++.+.|||||+++++... ....
T Consensus 176 ~------~~~fD~Vvani~------~~~~~~l~~~~~~~LkpgG~lilsgi~------------------------~~~~ 219 (250)
T PRK00517 176 G------DLKADVIVANIL------ANPLLELAPDLARLLKPGGRLILSGIL------------------------EEQA 219 (250)
T ss_pred C------CCCcCEEEEcCc------HHHHHHHHHHHHHhcCCCcEEEEEECc------------------------HhhH
Confidence 1 127999998633 234557889999999999998876110 0124
Q ss_pred hhHHHHHhhcCCeEEEeccE
Q 026036 218 TIFFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~ 237 (244)
..+.+.+++.||++..+.++
T Consensus 220 ~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 220 DEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred HHHHHHHHHCCCEEEEEEEe
Confidence 67888999999998877654
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.66 E-value=1.9e-15 Score=118.73 Aligned_cols=105 Identities=17% Similarity=0.270 Sum_probs=78.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|..++.+++. +.+|+++|+|+.++ +.++++...++++ +.....+.. ..+. .++||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l-~~a~~~~~~~~~~--v~~~~~d~~-~~~~-~~~fD~I~~~ 101 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASI-ASVLDMKARENLP--LRTDAYDIN-AAAL-NEDYDFIFST 101 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHHHhCCC--ceeEeccch-hccc-cCCCCEEEEe
Confidence 335679999999999999999876 67999999999987 7777776666652 222222221 1122 3579999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++ ++...+.....++++.+.|||||.+++.
T Consensus 102 ~~~-~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 102 VVF-MFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccc-ccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 987 5455566779999999999999996665
No 37
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.65 E-value=5.1e-15 Score=118.90 Aligned_cols=143 Identities=11% Similarity=0.073 Sum_probs=100.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
++|||+|||+|..+..+++.. +.+|+++|+|++++ +.++.+....++..++..+..+..+. +. .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~-~~a~~~~~~~gl~~~i~~~~~d~~~~-~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQA-EVGRERIRALGLQGRIRIFYRDSAKD-PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhcCCCcceEEEecccccC-CC-CCCCCEeehHHHH
Confidence 479999999999999998876 57899999999987 78888777766655555554444322 22 3579999999998
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
++. ++....++++.+.|||||++++......... .. . ......+ ..+..++.+.++++||++.+..+
T Consensus 78 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~---~----~~~~~~~-~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 78 HHI---KDKMDLFSNISRHLKDGGHLVLADFIANLLS-AI---E----HEETTSY-LVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred HhC---CCHHHHHHHHHHHcCCCCEEEEEEcccccCc-cc---c----ccccccc-cCCHHHHHHHHHHCCCeEEEeEE
Confidence 443 3355999999999999999988744321100 00 0 0011111 12357888999999999987653
No 38
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=6.2e-15 Score=126.85 Aligned_cols=156 Identities=11% Similarity=0.151 Sum_probs=101.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+.+.....++.+|||||||+|.++..+++..+.+|+++|+|++++ +.++++.. +. . +.+...+.... ++
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l-~~A~~~~~--~l--~---v~~~~~D~~~l-~~ 227 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ-KLAQERCA--GL--P---VEIRLQDYRDL-NG 227 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHhc--cC--e---EEEEECchhhc-CC
Confidence 44555556678899999999999999999887788999999999987 77776653 22 1 22222222222 46
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhh
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 226 (244)
+||.|++..++ ++....+....++++.++|||||++++..................++++ ....+ +...+.+.++
T Consensus 228 ~fD~Ivs~~~~-ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp-~g~lp--s~~~i~~~~~- 302 (383)
T PRK11705 228 QFDRIVSVGMF-EHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFP-NGCLP--SVRQIAQASE- 302 (383)
T ss_pred CCCEEEEeCch-hhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecC-CCcCC--CHHHHHHHHH-
Confidence 89999999888 5544556678999999999999999887543322111000000011111 11222 2455555555
Q ss_pred cCCeEEEecc
Q 026036 227 AGLEVKHLGS 236 (244)
Q Consensus 227 ~Gf~v~~~~~ 236 (244)
.||+++++..
T Consensus 303 ~~~~v~d~~~ 312 (383)
T PRK11705 303 GLFVMEDWHN 312 (383)
T ss_pred CCcEEEEEec
Confidence 5899888753
No 39
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.65 E-value=6.8e-15 Score=122.35 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
..|.+....+++.... .++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...|++...+... .
T Consensus 142 ~h~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al-~~a~~n~~~n~~~~~~~~~---~ 215 (288)
T TIGR00406 142 THPTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAV-ESARKNAELNQVSDRLQVK---L 215 (288)
T ss_pred CCHHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCcceEEE---e
Confidence 3355555455554432 36789999999999999998877667899999999997 8899999988875433322 2
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
.+......++||+|+++.. ...+...+.++.+.|||||.++++-.. ....
T Consensus 216 ~~~~~~~~~~fDlVvan~~------~~~l~~ll~~~~~~LkpgG~li~sgi~------------------------~~~~ 265 (288)
T TIGR00406 216 IYLEQPIEGKADVIVANIL------AEVIKELYPQFSRLVKPGGWLILSGIL------------------------ETQA 265 (288)
T ss_pred cccccccCCCceEEEEecC------HHHHHHHHHHHHHHcCCCcEEEEEeCc------------------------HhHH
Confidence 2222334568999999643 234568889999999999988875110 1123
Q ss_pred hhHHHHHhhcCCeEEEeccE
Q 026036 218 TIFFTSCENAGLEVKHLGSR 237 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~ 237 (244)
..+.+.+++. |++..+.++
T Consensus 266 ~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 266 QSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred HHHHHHHHcc-CceeeEecc
Confidence 5677777776 888776554
No 40
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.65 E-value=1.3e-15 Score=126.18 Aligned_cols=181 Identities=15% Similarity=0.119 Sum_probs=114.2
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeec-ccCCceEEEEecccCCC------CcceeechHHHHHHHHhh-cc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPH-QFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMH-HR 73 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~-~~ 73 (244)
+++++++..++...+...+. +....+..+++|+. ...+..+.+....+++. +.....|.+..+...... ..
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~ 117 (284)
T TIGR03533 39 HALHLPLDILEPFLDARLTP-SEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL 117 (284)
T ss_pred HHHCcCHHHHhhcccCCCCH-HHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh
Confidence 45667777888776666665 34445555566653 23233443433332221 123334445454444332 22
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..+++..++..+..++.+.+ ..++||+|+
T Consensus 118 ~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al-~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv 194 (284)
T TIGR03533 118 EPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIV 194 (284)
T ss_pred ccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEE
Confidence 22245699999999999999999875 57999999999997 899999988887555555554443332 345799999
Q ss_pred EcccccCCcC----------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~----------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+...... .....+.++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9876421110 012346788889999999987764
No 41
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.65 E-value=1.9e-15 Score=121.94 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=82.1
Q ss_pred ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 72 HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
.....++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.++.+....+. .++..+..+.. ..++.+++||
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~-~~v~~~~~d~~-~~~~~~~~fD 116 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENML-SVGRQKVKDAGL-HNVELVHGNAM-ELPFDDNSFD 116 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHhcCC-CceEEEEechh-cCCCCCCCcc
Confidence 3455578899999999999999998764 46899999999987 777777665554 23333333332 2344567899
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+|+++.++ ++ .++..+.++++.++|+|||++++...
T Consensus 117 ~V~~~~~l-~~--~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 117 YVTIGFGL-RN--VPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEeccc-cc--CCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999887 33 23445899999999999999887643
No 42
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=1.1e-14 Score=116.78 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=85.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+++.+... ...++.+|||+|||+|.+++.+++.+..+|+++|+++.++ +.+++|...++. .+..+..++.+.
T Consensus 21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l-~~a~~n~~~~~~--~~~~~~~d~~~~ 96 (223)
T PRK14967 21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAV-RSARLNALLAGV--DVDVRRGDWARA 96 (223)
T ss_pred cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHhCC--eeEEEECchhhh
Confidence 567777776543 3456789999999999999998876545999999999987 788888877665 233333333322
Q ss_pred CCCCCCCccEEEEcccccCCcC------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQ------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|+++.+++.... ...+...++++.+.|||||++++.
T Consensus 97 --~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 97 --VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred --ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 23468999999876532211 112456788899999999998875
No 43
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.65 E-value=1.3e-15 Score=126.47 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=119.0
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccC-
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHRE- 74 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~- 74 (244)
++++.++..++...+...++ +....+..+.+|+....+..+.+....+++. ......|.+..+.+.+.....
T Consensus 33 ~~l~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~ 111 (284)
T TIGR00536 33 HDLGRERDLLLAFLTEELTP-DEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLIS 111 (284)
T ss_pred HHHCcCHHHHhhccCCCCCH-HHHHHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhh
Confidence 34566777787777776666 4445566666665433333333333332221 123456678888887765432
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..+..+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..+++..++..+..++.+.. ...+||+|++
T Consensus 112 ~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al-~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvs 188 (284)
T TIGR00536 112 QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDAL-AVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVS 188 (284)
T ss_pred cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEE
Confidence 1223699999999999999999876 47999999999987 899999988877544555555554432 2337999999
Q ss_pred cccccCC------------cC----------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYV------------KQ----------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~------------~~----------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++.... +. .....+.++.+.+.|+|||.+++.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 8654211 11 113446788888999999987664
No 44
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.64 E-value=8.6e-15 Score=115.29 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=110.0
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-------CCeEEEEeCChHHHHHHHHHhHHhcCCCCC--cceEeeecCCCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-------NLDITTSDYNDQEIEDNIAYNSTTNGITPA--LPHIKHSWGDAFPI 143 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 143 (244)
..+..+.++||++||||-++.-+.+.. ..+|+..|+|++|+ +..++.+...++... +..+ ...++.+|+
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL-~vgkqRa~~~~l~~~~~~~w~-~~dAE~LpF 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML-AVGKQRAKKRPLKASSRVEWV-EGDAEDLPF 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH-HHHHHHHhhcCCCcCCceEEE-eCCcccCCC
Confidence 456688999999999999998776654 26899999999998 666665544444322 1222 223356889
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-----------------CCCCCC---CCe
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-----------------GTEGLP---WPA 203 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-----------------~~~~~~---~~~ 203 (244)
++.+||...++..+.+ .....+.+++++|+|||||+|.+.......+. +..... +-.
T Consensus 174 dd~s~D~yTiafGIRN---~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYq 250 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRN---VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQ 250 (296)
T ss_pred CCCcceeEEEecceec---CCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence 9999999999988844 44455999999999999999998733222210 000000 011
Q ss_pred EEEeeeeccCccchhhHHHHHhhcCCeEEE-eccEEE
Q 026036 204 FLMSWRRRIGKEDETIFFTSCENAGLEVKH-LGSRVY 239 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~-~~~~~~ 239 (244)
++...-++++. .++|..+.+++||.... .+...+
T Consensus 251 YLveSI~rfp~--qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 251 YLVESIRRFPP--QEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred hHHhhhhcCCC--HHHHHHHHHHcCCcccccccccee
Confidence 44444556655 78999999999999886 544433
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.64 E-value=1.9e-15 Score=114.11 Aligned_cols=106 Identities=22% Similarity=0.382 Sum_probs=83.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~ 152 (244)
++.+|||+|||+|.++..++.. . +.+++|+|++++++ +.++.+...++.+ ++..+..+..+ ++ +. +.||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLD-NIEFIQGDIED-LPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTST-TEEEEESBTTC-GCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhccccccccc-ccceEEeehhc-cccccC-CCeeEEE
Confidence 5789999999999999999843 3 78999999999998 8888887777774 56666666655 44 33 6899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
++.++++ ..+....++++.+.|+++|.+++....
T Consensus 79 ~~~~l~~---~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHH---FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGG---TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhh---ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999833 334458999999999999998887433
No 46
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.64 E-value=1.5e-14 Score=113.03 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=94.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...+...+.......++.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.+++|+..+++. ++ .+..++.
T Consensus 16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~-~i---~~~~~d~ 90 (187)
T PRK08287 16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCG-NI---DIIPGEA 90 (187)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCC-Ce---EEEecCc
Confidence 33344444444455578899999999999999998876 57899999999987 7888888776652 22 3333332
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhH
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIF 220 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (244)
.....++||+|++.... . .+...++.+.+.|+|||++++.... ..+..++
T Consensus 91 ~~~~~~~~D~v~~~~~~---~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------~~~~~~~ 140 (187)
T PRK08287 91 PIELPGKADAIFIGGSG---G---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------LENLHSA 140 (187)
T ss_pred hhhcCcCCCEEEECCCc---c---CHHHHHHHHHHhcCCCeEEEEEEec------------------------HhhHHHH
Confidence 22223579999987553 1 2346788899999999987764100 1224677
Q ss_pred HHHHhhcCCeEE
Q 026036 221 FTSCENAGLEVK 232 (244)
Q Consensus 221 ~~~l~~~Gf~v~ 232 (244)
.+.+++.||+..
T Consensus 141 ~~~l~~~g~~~~ 152 (187)
T PRK08287 141 LAHLEKCGVSEL 152 (187)
T ss_pred HHHHHHCCCCcc
Confidence 889999998643
No 47
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.63 E-value=8.9e-15 Score=123.10 Aligned_cols=155 Identities=11% Similarity=0.053 Sum_probs=100.0
Q ss_pred HHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 63 FSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 63 ~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
..+.+.+.+.... .++.+|||||||+|.++..+++.. +.+|+++|++++|+ +.++++....++ ..+..+.. .
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL-~~A~~k~~~~~i----~~i~gD~e-~ 171 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQL-AKAKQKEPLKEC----KIIEGDAE-D 171 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhhhccCC----eEEeccHH-h
Confidence 3344434433322 357799999999999998887764 57899999999987 666665432222 33333332 2
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-CCCCCCCCeEEEeeeeccCccchhh
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-GTEGLPWPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (244)
+++.+++||+|++++++.+... ..+.++++.+.|||||++++......... .... ... +....+.++
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~--~~~-------~~~~~t~eE 239 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF--ADV-------WMLFPKEEE 239 (340)
T ss_pred CCCCCCceeEEEEcChhhhCCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh--hhh-------hccCCCHHH
Confidence 4555678999999999844333 34899999999999999887632211100 0000 000 111123589
Q ss_pred HHHHHhhcCCeEEEec
Q 026036 220 FFTSCENAGLEVKHLG 235 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~~ 235 (244)
+.++++++||+.+++.
T Consensus 240 l~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 240 YIEWFTKAGFKDVKLK 255 (340)
T ss_pred HHHHHHHCCCeEEEEE
Confidence 9999999999987664
No 48
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.5e-14 Score=118.00 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=120.6
Q ss_pred CCCCCccCCCCCCCcccccccccceeeeecccCCceEEEEecccCCC------CcceeechHHHHHHHHhhccCcccCCe
Q 026036 7 SPSSLFAEEDDVTVDEETMETCNGYVERPHQFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMHHREWIERRR 80 (244)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~~~~~~~~~~ 80 (244)
.+..++...+...+. +..........|.....+..+.+....+++. .-....|.++.|.+.+......... +
T Consensus 36 ~~~~~~~~~~~~~~~-~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~~-~ 113 (280)
T COG2890 36 PRDQLLAHPEAELSE-EELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDK-R 113 (280)
T ss_pred CHHHHhhccccccCH-HHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhhhhcCC-c
Confidence 344555555555554 3344444444443332223333332222111 1356777899999987633222122 7
Q ss_pred EEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 81 CIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
|||||||||.+++.++.... .+|+|+|+|+.++ +.+++|+..+++ .++..+..+|.+.. .++||+|++|++. -
T Consensus 114 ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al-~~A~~Na~~~~l-~~~~~~~~dlf~~~---~~~fDlIVsNPPY-i 187 (280)
T COG2890 114 ILDLGTGSGAIAIALAKEGPDAEVIAVDISPDAL-ALARENAERNGL-VRVLVVQSDLFEPL---RGKFDLIVSNPPY-I 187 (280)
T ss_pred EEEecCChHHHHHHHHhhCcCCeEEEEECCHHHH-HHHHHHHHHcCC-ccEEEEeeeccccc---CCceeEEEeCCCC-C
Confidence 99999999999999998874 5999999999998 999999999987 33334433555443 3489999999884 3
Q ss_pred CcC-----------------------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccc
Q 026036 160 VKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 160 ~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (244)
... .....+.+..+.+.|+|||.+++- + .. ..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le---------------------~--g~--~q 242 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE---------------------I--GL--TQ 242 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE---------------------E--CC--Cc
Confidence 332 112346667778899998865553 1 11 11
Q ss_pred hhhHHHHHhhcC-CeE
Q 026036 217 ETIFFTSCENAG-LEV 231 (244)
Q Consensus 217 ~~~~~~~l~~~G-f~v 231 (244)
...+.+++.+.| |..
T Consensus 243 ~~~v~~~~~~~~~~~~ 258 (280)
T COG2890 243 GEAVKALFEDTGFFEI 258 (280)
T ss_pred HHHHHHHHHhcCCceE
Confidence 367888899999 543
No 49
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=4.9e-15 Score=121.03 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=96.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
.++.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+|+.|+ +.++++... ...+..+. +.+++.
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l-~~a~~~~~~------~~~~~~d~-~~~~~~ 100 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPML-AQARQKDAA------DHYLAGDI-ESLPLA 100 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHH-HHHHhhCCC------CCEEEcCc-ccCcCC
Confidence 3334444344345679999999999999888765 68999999999987 666554321 12333333 234566
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe-EEEeeeeccCccchhhHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA-FLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 223 (244)
+++||+|+++.++ ++ .+++..++.++.++|+|||.+++++....... ........ ....+..++. +.+++.++
T Consensus 101 ~~~fD~V~s~~~l-~~--~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-el~~~~~~~~~~~~~~~~~--~~~~l~~~ 174 (251)
T PRK10258 101 TATFDLAWSNLAV-QW--CGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-ELHQAWQAVDERPHANRFL--PPDAIEQA 174 (251)
T ss_pred CCcEEEEEECchh-hh--cCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-HHHHHHHHhccCCccccCC--CHHHHHHH
Confidence 6789999999988 43 23455999999999999999998754332111 00000000 0001122222 25778888
Q ss_pred HhhcCCeEE
Q 026036 224 CENAGLEVK 232 (244)
Q Consensus 224 l~~~Gf~v~ 232 (244)
+...|++..
T Consensus 175 l~~~~~~~~ 183 (251)
T PRK10258 175 LNGWRYQHH 183 (251)
T ss_pred HHhCCceee
Confidence 888887643
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.62 E-value=8.8e-15 Score=123.94 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=80.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
...+|||+|||+|.++..+++.. ..+|+++|+++.++ +.++.|...|++.. .+.+.+......++||+|+++.
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~~nl~~n~l~~-----~~~~~D~~~~~~~~fDlIvsNP 269 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSRATLAANGLEG-----EVFASNVFSDIKGRFDMIISNP 269 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCC-----EEEEcccccccCCCccEEEECC
Confidence 34589999999999999998876 46899999999987 88888988887732 2223343333456899999999
Q ss_pred cccCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++... ......+.++++.+.|||||.++++
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 874321 2345668999999999999999886
No 51
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.5e-14 Score=117.72 Aligned_cols=115 Identities=18% Similarity=0.202 Sum_probs=85.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
+.++++.....+.+|||+|||.|.+++.+++.. ..+++.+|++..++ +.+++|+..|+.+.. ... ..+......
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av-~~ar~Nl~~N~~~~~-~v~---~s~~~~~v~ 222 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAV-ESARKNLAANGVENT-EVW---ASNLYEPVE 222 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHH-HHHHHhHHHcCCCcc-EEE---Eeccccccc
Confidence 344444555555699999999999999999987 57899999999987 999999999988542 111 122222222
Q ss_pred CCccEEEEcccccCCcC--hHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQ--YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~--~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+||++++.... .....++++...+.|++||.+.++
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEE
Confidence 38999999999843221 112238899999999999998887
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.61 E-value=1.7e-14 Score=111.76 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=74.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.+++.++... ..+|+++|.++.++ +.+++++..++.+ ++..+..+..+. . ..++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~-~~a~~~~~~~~~~-~i~~i~~d~~~~-~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKV-AFLREVKAELGLN-NVEIVNGRAEDF-Q-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHH-HHHHHHHHHhCCC-CeEEEecchhhc-c-ccCCccEEEehh
Confidence 57899999999999999988765 57899999999987 7888887777663 344554444332 1 246899999865
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ . .+...++.+.+.|+|||++++.
T Consensus 118 -~-~-----~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -L-A-----SLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -h-h-----CHHHHHHHHHHhcCCCCEEEEE
Confidence 3 1 2336777889999999987764
No 53
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=7.6e-15 Score=117.49 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=96.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.+|||+|||+|.++..++.. +.+|+|+|++++++ +.++++...+....++.....+.. ... ++||+|++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i-~~a~~~~~~~~~~~~i~~~~~d~~---~~~-~~fD~ii~~ 126 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMV-QMARNRAQGRDVAGNVEFEVNDLL---SLC-GEFDIVVCM 126 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcCCCCceEEEECChh---hCC-CCcCEEEEh
Confidence 456789999999999999999875 67999999999997 777777665544333333332322 222 689999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCC----CCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG----EGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++++ ...+.+..+++++.+.+++++.+.+........ ....+.... ....... .+..++.++++++||+
T Consensus 127 ~~l~~-~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~l~~~Gf~ 200 (219)
T TIGR02021 127 DVLIH-YPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSS---RATSAYL--HPMTDLERALGELGWK 200 (219)
T ss_pred hHHHh-CCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcc---cccceEE--ecHHHHHHHHHHcCce
Confidence 99844 344567789999999988765444321100000 000000000 0000111 1257899999999999
Q ss_pred EEEeccEE
Q 026036 231 VKHLGSRV 238 (244)
Q Consensus 231 v~~~~~~~ 238 (244)
+.......
T Consensus 201 v~~~~~~~ 208 (219)
T TIGR02021 201 IVREGLVS 208 (219)
T ss_pred eeeeeccc
Confidence 99876443
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.61 E-value=1.4e-14 Score=110.69 Aligned_cols=149 Identities=15% Similarity=0.281 Sum_probs=104.2
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++|+ .+|.||||||||.|.+...+....+.+..|+|++++.+ ..+ -.+++ ..++.+..+.+.
T Consensus 5 ~~I~~~I------~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v-~~c----v~rGv----~Viq~Dld~gL~ 69 (193)
T PF07021_consen 5 QIIAEWI------EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNV-AAC----VARGV----SVIQGDLDEGLA 69 (193)
T ss_pred HHHHHHc------CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHH-HHH----HHcCC----CEEECCHHHhHh
Confidence 4556664 37899999999999999888877789999999999876 332 23344 466777766654
Q ss_pred -CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--------CCCCCC---CCeEEEeeee
Q 026036 143 -IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEGLP---WPAFLMSWRR 210 (244)
Q Consensus 143 -~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~ 210 (244)
+++++||+||++.++ ++ .....+.++++.|+ |.+.+++.+++.... +.+... +-.|+-...-
T Consensus 70 ~f~d~sFD~VIlsqtL-Q~--~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi 143 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTL-QA--VRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI 143 (193)
T ss_pred hCCCCCccEEehHhHH-Hh--HhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence 778899999999999 44 44445888888776 445577755554332 222111 1125544444
Q ss_pred ccCccchhhHHHHHhhcCCeEEEe
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+..+ ..+|.++|++.|+++++-
T Consensus 144 h~~T--i~DFe~lc~~~~i~I~~~ 165 (193)
T PF07021_consen 144 HLCT--IKDFEDLCRELGIRIEER 165 (193)
T ss_pred cccc--HHHHHHHHHHCCCEEEEE
Confidence 5544 799999999999998764
No 55
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=2e-15 Score=126.30 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=115.1
Q ss_pred CcccCCCCCCccCCCCCCCcccccccccceeeeec-ccCCceEEEEecccCCC------CcceeechHHHHHHHHhh-cc
Q 026036 2 DVALFSPSSLFAEEDDVTVDEETMETCNGYVERPH-QFPEMELVIREFAFHQL------NANFLWPGTFSFAEWLMH-HR 73 (244)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~w~~~~~l~~~~~~-~~ 73 (244)
++++.++..++...+...++ +....+..++.|+. ...+..+.+....+++. ......|.+..+...... ..
T Consensus 51 ~~l~~~~~~l~~~~~~~l~~-~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~ 129 (307)
T PRK11805 51 HALHLPLDIPEPFLDARLTP-SEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL 129 (307)
T ss_pred HHHCcCHHHHhhcccCCCCH-HHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh
Confidence 45667788888777666665 44555666666664 23334444443333221 113344445544444332 11
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
......+|||+|||+|.+++.++... ..+|+++|+|+.++ +.+++|+..+++..++..+..++.+.+ +.++||+|+
T Consensus 130 ~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al-~~A~~n~~~~~l~~~i~~~~~D~~~~l--~~~~fDlIv 206 (307)
T PRK11805 130 EDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDAL-AVAEINIERHGLEDRVTLIESDLFAAL--PGRRYDLIV 206 (307)
T ss_pred ccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCCcEEEEECchhhhC--CCCCccEEE
Confidence 21123689999999999999998876 57999999999997 899999988877555555554443332 235799999
Q ss_pred EcccccCCcC----------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ----------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~----------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+...... .....+.++.+.+.|+|||++++-
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9876311100 122347788899999999987764
No 56
>PRK08317 hypothetical protein; Provisional
Probab=99.61 E-value=2.5e-14 Score=115.60 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=107.6
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
||....+.+.+.......++.+|||+|||+|..+..++... ..+|+++|+++.++ +.++++... ...++..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-~~a~~~~~~--~~~~~~~~~~d 77 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-ALAKERAAG--LGPNVEFVRGD 77 (241)
T ss_pred CchHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-HHHHHHhhC--CCCceEEEecc
Confidence 34455556666666677788999999999999999888775 46899999999886 666655221 11222333222
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC------CCeEEEeeee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP------WPAFLMSWRR 210 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 210 (244)
.. ..++..++||+|++..++.+. .+....++++.++|||||.+++..+............ ...+.. ...
T Consensus 78 ~~-~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (241)
T PRK08317 78 AD-GLPFPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-HFA 152 (241)
T ss_pred cc-cCCCCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-cCC
Confidence 21 234455789999999998333 3445899999999999999988754321110000000 000000 000
Q ss_pred ccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
.......+.+.++++||++..+.....
T Consensus 153 --~~~~~~~~~~~l~~aGf~~~~~~~~~~ 179 (241)
T PRK08317 153 --DPWLGRRLPGLFREAGLTDIEVEPYTL 179 (241)
T ss_pred --CCcHHHHHHHHHHHcCCCceeEEEEEE
Confidence 111235788899999998877765443
No 57
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.61 E-value=4.9e-14 Score=114.79 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=102.9
Q ss_pred echHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 59 WPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.+.+..+.+.+...... ..+.+|||+|||+|.+++.++... +.+|+++|+|+.++ +.+++|+..++. ..+..+
T Consensus 67 r~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al-~~A~~N~~~~~~----~~~~~D 141 (251)
T TIGR03704 67 RRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAV-RCARRNLADAGG----TVHEGD 141 (251)
T ss_pred CccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCC----EEEEee
Confidence 35678888887654321 234589999999999999998765 56899999999997 888999887664 334444
Q ss_pred cCCCCCC-CCCCccEEEEcccccCCc-------------C----------hHHHHHHHHHHHHhcCCCCceEeecccccC
Q 026036 137 WGDAFPI-PNPDWDLILASDILLYVK-------------Q----------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 192 (244)
Q Consensus 137 ~~~~~~~-~~~~fD~I~~~~~l~~~~-------------~----------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~ 192 (244)
+.+.++. ..++||+|+++.+..-.. . ...+.+.++.+.+.|+|||++++.
T Consensus 142 ~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~------ 215 (251)
T TIGR03704 142 LYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE------ 215 (251)
T ss_pred chhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE------
Confidence 4333221 135799999988753111 0 111347777888999999988765
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+.. ....++...++++||+..-+....
T Consensus 216 ---------------~~~----~~~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 216 ---------------TSE----RQAPLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred ---------------ECc----chHHHHHHHHHHCCCCceeeEccc
Confidence 111 113578888999999876655443
No 58
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=7.4e-14 Score=111.73 Aligned_cols=150 Identities=7% Similarity=-0.005 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
++..++.+ +...+.++.+|||+|||+|..+..++... ..+|+++|+++.|+ +.+.+++... .++..+..+..+
T Consensus 58 ~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml-~~l~~~a~~~---~nv~~i~~D~~~ 131 (226)
T PRK04266 58 AAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPM-RELLEVAEER---KNIIPILADARK 131 (226)
T ss_pred HHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHH-HHHHHHhhhc---CCcEEEECCCCC
Confidence 44444444 23566788999999999999999998875 46899999999987 4444443321 112333323222
Q ss_pred CC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccch
Q 026036 140 AF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 140 ~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
+. ....++||+|++... ...+...+++++.+.|||||++++.++...- .+.....+++
T Consensus 132 ~~~~~~l~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~----------d~~~~~~~~~----- 191 (226)
T PRK04266 132 PERYAHVVEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSI----------DVTKDPKEIF----- 191 (226)
T ss_pred cchhhhccccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEEecccc----------cCcCCHHHHH-----
Confidence 11 111346999986321 1222235689999999999999986433100 0111111111
Q ss_pred hhHHHHHhhcCCeEEEecc
Q 026036 218 TIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~ 236 (244)
+...+.++++||+++...+
T Consensus 192 ~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 192 KEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred HHHHHHHHHcCCeEEEEEc
Confidence 2345889999999887754
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=4.4e-14 Score=111.31 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=93.2
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (244)
.......++.+|||+|||+|.+++.+++.. ..+|+++|+++.++ +.+++|+..+++..++..+..+..+.++...++
T Consensus 33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344566788999999999999999987753 46899999999987 888888888775344444433332322333468
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
||.|++... ...+...++.+.+.|||||++++.... . ++.....+.+++.
T Consensus 112 ~D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~----------------------~--~~~~~~~~~l~~~ 161 (198)
T PRK00377 112 FDRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAIL----------------------L--ETVNNALSALENI 161 (198)
T ss_pred CCEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeec----------------------H--HHHHHHHHHHHHc
Confidence 999998532 223458899999999999988764111 1 1236777888889
Q ss_pred CCeEE
Q 026036 228 GLEVK 232 (244)
Q Consensus 228 Gf~v~ 232 (244)
||.++
T Consensus 162 g~~~~ 166 (198)
T PRK00377 162 GFNLE 166 (198)
T ss_pred CCCeE
Confidence 98544
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.60 E-value=5.4e-14 Score=102.11 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=81.9
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+...+.......++.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.+++++..++.. ++..+..+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 334445555555567899999999999999998875 57899999999987 8888887766553 22333222222122
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|++.... ....+.++.+.+.|+|||++++.
T Consensus 84 ~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSG------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcc------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 234589999986543 23348899999999999998876
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=1e-14 Score=120.68 Aligned_cols=150 Identities=18% Similarity=0.281 Sum_probs=103.1
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
....|.+..+.+++.......++.+|||+|||+|.+++.++... ..+|+++|+++.++ +.++.|.. +....++..+.
T Consensus 87 lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~~a~~n~~-~~~~~~i~~~~ 164 (275)
T PRK09328 87 LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-AVARRNAK-HGLGARVEFLQ 164 (275)
T ss_pred eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHH-hCCCCcEEEEE
Confidence 44566788888888755555577899999999999999998876 57899999999987 78888876 22223344444
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCc-----------------------ChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVK-----------------------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~-----------------------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.++.+.. ..++||+|+++.+..... ......+.++++.+.|+|||.+++.+
T Consensus 165 ~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~---- 238 (275)
T PRK09328 165 GDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI---- 238 (275)
T ss_pred ccccCcC--CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE----
Confidence 4443322 246899999987642110 01223467788889999999877641
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
.. .....+.+++++.||....+
T Consensus 239 -----------------g~----~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 239 -----------------GY----DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----------------Cc----hHHHHHHHHHHhCCCceeEE
Confidence 11 11256778888999964433
No 62
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=2.5e-14 Score=119.05 Aligned_cols=103 Identities=16% Similarity=0.282 Sum_probs=79.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||+|||+|..++.++.. +.+|+++|+|+.++ +.+++++..+++ .+.....+..+ .. .+++||+|+++.+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai-~~~~~~~~~~~l--~v~~~~~D~~~-~~-~~~~fD~I~~~~v 193 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSL-ENLQEIAEKENL--NIRTGLYDINS-AS-IQEEYDFILSTVV 193 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHHcCC--ceEEEEechhc-cc-ccCCccEEEEcch
Confidence 4569999999999999999876 67999999999987 778887777665 23333222222 12 2568999999998
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++...+.....++++.+.|+|||.+++.
T Consensus 194 l-~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 194 L-MFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred h-hhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8 4445567779999999999999997665
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.58 E-value=3.5e-14 Score=114.69 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=105.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
...+++.......++.+|||||||+|.++..+++. +.+|+++|+++.++ +.++.+....+. .+..+..+..+....
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 110 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENI-EVARLHALESGL--KIDYRQTTAEELAAE 110 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHH-HHHHHHHHHcCC--ceEEEecCHHHhhhh
Confidence 33456665555567889999999999999888775 67899999999886 677766655443 222333333222222
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC--------CCCCCCeEEEeeeeccCcc
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT--------EGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 215 (244)
..++||+|+++.++.+. ++....++.+.+.|+|||++++........... .....+. ......++.
T Consensus 111 ~~~~fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 184 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK-GTHDYKKFI-- 184 (233)
T ss_pred cCCCccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc-ccCchhhcC--
Confidence 34689999999988443 344488899999999999988774321110000 0000000 000011122
Q ss_pred chhhHHHHHhhcCCeEEEeccEEE
Q 026036 216 DETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
+..++.++++++||+++......|
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~~~~~ 208 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDITGLHY 208 (233)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEe
Confidence 247789999999999987765443
No 64
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=1e-13 Score=113.68 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=79.2
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
++.+.......++.+|||||||+|.++..++... +.+|+++|+|+.++ +.++++.. ++..+..+..+. ..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i-~~a~~~~~------~~~~~~~d~~~~--~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAML-AEARSRLP------DCQFVEADIASW--QP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHhCC------CCeEEECchhcc--CC
Confidence 3334444455678899999999999999998775 67999999999987 66665531 122222222111 12
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
.++||+|+++.++ ++. ++..+.++++.+.|||||.+++.++
T Consensus 91 ~~~fD~v~~~~~l-~~~--~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 91 PQALDLIFANASL-QWL--PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCCccEEEEccCh-hhC--CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 3589999999998 443 3445899999999999999988743
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=1.4e-14 Score=114.40 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=89.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.++++...++. .++..+..+..+.++ +..++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i-~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGV-GKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHH-HHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEE
Confidence 56799999999999999998775 56899999999997 788887777665 233444433311122 44568999998
Q ss_pred cccccCCcC-----hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcC
Q 026036 154 SDILLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAG 228 (244)
Q Consensus 154 ~~~l~~~~~-----~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 228 (244)
+.+...... .......++++.++|||||.+++.+... . ....+.+.+++.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------------~----~~~~~~~~~~~~g 173 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------------G----YAEYMLEVLSAEG 173 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------------H----HHHHHHHHHHhCc
Confidence 754311110 0013478999999999999988762111 1 1256778888899
Q ss_pred CeEE
Q 026036 229 LEVK 232 (244)
Q Consensus 229 f~v~ 232 (244)
+++.
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 8776
No 66
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.57 E-value=3e-14 Score=116.04 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=81.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++.+|||||||+|..+..+++. .+.+|+++|+|+.|+ +.++++...++...++..+..+. ...+.+.+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVIEGDI---RDIAIENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEeCCh---hhCCCCCCCEEeh
Confidence 6789999999999999888763 267999999999998 88888877655543444443332 2223346999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.++ ++...+....+++++++.|||||.+++..
T Consensus 132 ~~~l-~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTL-QFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHH-HhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9888 54445566789999999999999998873
No 67
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=9.5e-15 Score=105.25 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~ 156 (244)
|.+|||+|||+|.+.+.+++.+..+++++|+++..+ +.++.+...++...++..+..+..+.. ....++||+|+++.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~-~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAV-ELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHH-HHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHH-HHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 569999999999999999988668999999999987 889999988877666666655554332 345678999999998
Q ss_pred ccCCcC-----hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 157 LLYVKQ-----YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 157 l~~~~~-----~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+..... .......++++.+.|||||.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 743211 1234578899999999999988763
No 68
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.56 E-value=1.1e-13 Score=116.25 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=104.6
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
+.+.+.....++.+|||+|||+|.+++.+++.. ..+++++|. +.++ +.+++++...++.+++..+..+. .....
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~-~~a~~~~~~~gl~~rv~~~~~d~---~~~~~ 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAI-DLVNENAAEKGVADRMRGIAVDI---YKESY 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHH-HHHHHHHHhCCccceEEEEecCc---cCCCC
Confidence 444444455577899999999999999999886 578999998 5666 78888888777755555544433 22122
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC------CCeEEEeeeeccCccchhh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP------WPAFLMSWRRRIGKEDETI 219 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 219 (244)
+.+|+|+++.++++ ...+...+.++++++.|+|||++++............... ...+..... .. ...++
T Consensus 214 ~~~D~v~~~~~lh~-~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~e 289 (306)
T TIGR02716 214 PEADAVLFCRILYS-ANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVL-GF--KEQAR 289 (306)
T ss_pred CCCCEEEeEhhhhc-CChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccc-cC--CCHHH
Confidence 34799999998844 3445567899999999999999998844332221110000 000011111 11 12478
Q ss_pred HHHHHhhcCCeEEEe
Q 026036 220 FFTSCENAGLEVKHL 234 (244)
Q Consensus 220 ~~~~l~~~Gf~v~~~ 234 (244)
+.++++++||+.+.+
T Consensus 290 ~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 290 YKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHHcCCCeeEe
Confidence 999999999986653
No 69
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.56 E-value=1.7e-13 Score=110.83 Aligned_cols=108 Identities=20% Similarity=0.263 Sum_probs=79.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||+|||+|..+..++..+. .+|+++|+++.++ +.++++...++...++..+..+..+ .+...++||+|+
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~-~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~ 126 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGML-AVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVT 126 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEE
Confidence 34678999999999999999988774 8999999999987 7777776554333333444433322 234456899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++.++.+. .+....++.+.+.|+|||.+++..
T Consensus 127 ~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 127 IAFGLRNV---PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EecccccC---CCHHHHHHHHHHhccCCcEEEEEE
Confidence 98888333 345588999999999999988763
No 70
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.55 E-value=1.2e-14 Score=102.00 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=71.7
Q ss_pred EEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 81 CIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
|||+|||+|.....++... ..+++++|+|++|+ +.++++....+. .+..+..+..+ ++...++||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l-~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEML-ELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHH-HHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHH-HHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcCC
Confidence 7999999999999998875 37999999999998 777777655444 34444444433 3445679999999655
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
.+++...+++.+.++++.++++|||
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3366777889999999999999987
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=3.3e-13 Score=110.08 Aligned_cols=149 Identities=18% Similarity=0.277 Sum_probs=103.6
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
...+|.+..+.+.+..... ..+.+|||+|||+|.++..++... ..+++++|+++.++ +.++.++..+++. ++..+.
T Consensus 67 ~~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~-~~~~~~ 143 (251)
T TIGR03534 67 LIPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEAL-AVARKNAARLGLD-NVTFLQ 143 (251)
T ss_pred ccCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEE
Confidence 3456778888777766543 245699999999999999998875 56899999999987 8888888877663 233333
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
.++.+ ....++||+|+++.++..... .......++.+.+.|+|||.+++..
T Consensus 144 ~d~~~--~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~---- 217 (251)
T TIGR03534 144 SDWFE--PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI---- 217 (251)
T ss_pred Cchhc--cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE----
Confidence 33333 233568999999877532110 0112367889999999999877641
Q ss_pred CCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe
Q 026036 192 QGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 234 (244)
. . .....+.+.++++||+.+.+
T Consensus 218 -----------------~--~--~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 218 -----------------G--Y--DQGEAVRALFEAAGFADVET 239 (251)
T ss_pred -----------------C--c--cHHHHHHHHHHhCCCCceEE
Confidence 0 0 11357788899999976554
No 72
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.54 E-value=1.5e-15 Score=106.26 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=58.9
Q ss_pred EEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC-CCccEEEEcccccC
Q 026036 82 IELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLY 159 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~~~~l~~ 159 (244)
||+|||+|.++..++... ..+++++|+|+.|+ +.++++...... .....+.+...+...... ++||+|+++.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l-~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSML-ERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTT-STTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 799999999998887774 67899999999987 555555444332 112223333333322222 48999999999944
Q ss_pred CcChHHHHHHHHHHHHhcCCCCce
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
. +++...++.+.+.|||||++
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 3 56669999999999999964
No 73
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.54 E-value=1.6e-13 Score=110.21 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=98.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
..+.+|||+|||+|.++..+++. +.+++++|+++.++ +.++++...++.. .+.....+..+......++||+|+++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~-~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENI-EVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 45789999999999999888765 56799999999987 7777776655441 122222222111111236899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-------CCCC-CCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------GTEG-LPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
++.+. .+....++.+.+.|+|||.+++......... ..+. ...+.- .....++. +..++.++++++
T Consensus 121 ~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~l~~~ 194 (224)
T TIGR01983 121 VLEHV---PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKG-THDWEKFI--KPSELTSWLESA 194 (224)
T ss_pred HHHhC---CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCC-cCChhhcC--CHHHHHHHHHHc
Confidence 98443 3444889999999999999887643221100 0000 000000 00011121 246788999999
Q ss_pred CCeEEEeccEEEE
Q 026036 228 GLEVKHLGSRVYC 240 (244)
Q Consensus 228 Gf~v~~~~~~~~~ 240 (244)
||+++++....|.
T Consensus 195 G~~i~~~~~~~~~ 207 (224)
T TIGR01983 195 GLRVKDVKGLVYN 207 (224)
T ss_pred CCeeeeeeeEEee
Confidence 9999988766543
No 74
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.53 E-value=1.3e-13 Score=115.22 Aligned_cols=148 Identities=16% Similarity=0.051 Sum_probs=87.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.+++.+++. +.+|+++|+|+.|+ +.++++........ ....+.+...+. ...+++||+|+|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml-~~A~~~~~~~~~~~~~~~~~~f~~~Dl-~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMV-AEAERRAKEALAALPPEVLPKFEANDL-ESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHH-HHHHHHHHhcccccccccceEEEEcch-hhcCCCcCEEEEcC
Confidence 5789999999999999999876 67999999999998 77777765432100 001122222221 22256899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeec-ccccC-----CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCC
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQ-----GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGL 229 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 229 (244)
+++| ...+.....++.+.+. .+|| +++.. +.... .....+.... ...+.+. .+.+++.++++++||
T Consensus 221 vL~H-~p~~~~~~ll~~l~~l-~~g~-liIs~~p~~~~~~~l~~~g~~~~g~~----~~~r~y~-~s~eel~~lL~~AGf 292 (315)
T PLN02585 221 VLIH-YPQDKADGMIAHLASL-AEKR-LIISFAPKTLYYDILKRIGELFPGPS----KATRAYL-HAEADVERALKKAGW 292 (315)
T ss_pred EEEe-cCHHHHHHHHHHHHhh-cCCE-EEEEeCCcchHHHHHHHHHhhcCCCC----cCceeee-CCHHHHHHHHHHCCC
Confidence 9844 3334455667777654 4544 44432 11000 0001110000 0011111 135899999999999
Q ss_pred eEEEec
Q 026036 230 EVKHLG 235 (244)
Q Consensus 230 ~v~~~~ 235 (244)
+++...
T Consensus 293 ~v~~~~ 298 (315)
T PLN02585 293 KVARRE 298 (315)
T ss_pred EEEEEE
Confidence 988655
No 75
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=2.4e-13 Score=107.62 Aligned_cols=114 Identities=15% Similarity=0.085 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+..+..++.+.....++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.+++|...++...++..+..+..+
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCccc
Confidence 33445555555566678899999999999998888765 46899999999987 7788888777664334444333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ...+||.|++..++ .+ .+ +++.+.|+|||++++.
T Consensus 136 ~~~-~~~~fD~Ii~~~~~-~~--~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 136 GLE-KHAPFDAIIVTAAA-ST--IP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCc-cCCCccEEEEccCc-ch--hh------HHHHHhcCcCcEEEEE
Confidence 222 24589999998776 21 22 3578899999998775
No 76
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=9.7e-13 Score=99.74 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=102.7
Q ss_pred eeecccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 33 ERPHQFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
+....++.....+.|+..... .+..+..... ......|++|+|+|||||.+++.++..+..+|+++|+++++
T Consensus 9 ~kl~~f~~p~~~LEQY~Tp~~-------~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a 80 (198)
T COG2263 9 EKLKGFPNPKLGLEQYRTPAP-------LAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEA 80 (198)
T ss_pred hhhcCCCCCCccceecCCChH-------HHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHH
Confidence 334556667888888754322 2222222222 23456888999999999999999998888999999999999
Q ss_pred HHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccC
Q 026036 113 IEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQ 192 (244)
Q Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~ 192 (244)
+ +.++.|+.... ..+.++.. +. .....++|.+++|+++=......+ ...+....+.. ..+
T Consensus 81 ~-ei~r~N~~~l~--g~v~f~~~---dv-~~~~~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~s----~vV-------- 140 (198)
T COG2263 81 L-EIARANAEELL--GDVEFVVA---DV-SDFRGKFDTVIMNPPFGSQRRHAD-RPFLLKALEIS----DVV-------- 140 (198)
T ss_pred H-HHHHHHHHhhC--CceEEEEc---ch-hhcCCccceEEECCCCccccccCC-HHHHHHHHHhh----heE--------
Confidence 7 89999988732 23333332 22 223567999999998732222111 13333333332 111
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEEEEec
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVYCIKL 243 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~ 243 (244)
+.-|+.. . .+...+..+..|+.+.+...-.+.|+.
T Consensus 141 ------------YsiH~a~--~--~~f~~~~~~~~G~~v~~~~~~~~~iP~ 175 (198)
T COG2263 141 ------------YSIHKAG--S--RDFVEKFAADLGGTVTHIERARFPIPR 175 (198)
T ss_pred ------------EEeeccc--c--HHHHHHHHHhcCCeEEEEEEEEEecCc
Confidence 1112111 2 234456688889998888766666653
No 77
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=1.9e-13 Score=110.83 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=80.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.|+ +.++++........++..+..+. .....+.+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml-~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMV-ERCRQHIAAYHSEIPVEILCNDI---RHVEIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEEECCh---hhCCCCCCCEEee
Confidence 67799999999999999888753 67899999999997 78877766543322333333333 2222346899999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+.++ ++....+..+.++++++.|||||.+++..
T Consensus 129 ~~~l-~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTL-QFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecch-hhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 9988 55555567799999999999999998874
No 78
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.52 E-value=5.4e-13 Score=113.09 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=86.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.+.......++.+|||+|||+|.+.+.++.. +.+++|+|+++.|+ ..++.|+...+... +..+..+.. .++
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~-~~a~~nl~~~g~~~-i~~~~~D~~-~l~ 243 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMV-AGARINLEHYGIED-FFVKRGDAT-KLP 243 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHH-HHHHHHHHHhCCCC-CeEEecchh-cCC
Confidence 456666665556668889999999999999887654 78999999999997 78888888777643 333332322 234
Q ss_pred CCCCCccEEEEcccccCCc------Ch-HHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVK------QY-SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~------~~-~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+++||+|+++.++ ... .. .-..+.++++.+.|||||++++.
T Consensus 244 ~~~~~~D~Iv~dPPy-g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 244 LSSESVDAIATDPPY-GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cccCCCCEEEECCCC-cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 445789999998764 221 11 22468899999999999988775
No 79
>PRK06202 hypothetical protein; Provisional
Probab=99.52 E-value=3.1e-13 Score=109.12 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=92.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHh----C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 76 IERRRCIELGSGTGALAIFLRKA----M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~----~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
.++.+|||||||+|.++..++.. + +.+|+|+|++++|+ +.++++...+++ .....+ .+.++..+++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~~----~~~~~~-~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPGV----TFRQAV-SDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCCC----eEEEEe-cccccccCCCccE
Confidence 45679999999999998887653 1 35899999999997 666665443333 222222 2334445678999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC-------------CCCCCCCCeEEEeeeeccCccch
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE-------------GTEGLPWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 217 (244)
|+++.++ +|...+++.++++++.++++ |.+++......... ..+...+ -..+..+.+ +.
T Consensus 133 V~~~~~l-hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~s~~~~~---~~ 204 (232)
T PRK06202 133 VTSNHFL-HHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTD--GLLSVRRSY---TP 204 (232)
T ss_pred EEECCee-ecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeecc--chHHHHhhc---CH
Confidence 9999998 55555557789999999987 43343311111000 0000000 001111222 25
Q ss_pred hhHHHHHhhcCCeEEEeccEE
Q 026036 218 TIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
+++.+++++ ||+++....-.
T Consensus 205 ~el~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 205 AELAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHHHHHhhC-CCeEEecccee
Confidence 788899999 99998876443
No 80
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.52 E-value=3e-13 Score=108.99 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=92.8
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++....+...++.....+ ++..+++||+|++.+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i-~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMV-EEARERAPEAGLAGNITFEVGD----LESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccCcEEEEcC----chhccCCcCEEEEcc
Confidence 46779999999999999999876 56799999999987 7777766555443333333332 333456899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
++ ++...+.+...++.+.+.+++++. +.......... .......+. ..........+..++.++++++||++..
T Consensus 136 ~l-~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 136 VL-IHYPQEDAARMLAHLASLTRGSLI-FTFAPYTPLLALLHWIGGLFPG--PSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hh-hcCCHHHHHHHHHHHHhhcCCeEE-EEECCccHHHHHHHHhccccCC--ccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 98 444456677888888887654432 22211100000 000000000 0000111112357888999999999988
Q ss_pred ecc
Q 026036 234 LGS 236 (244)
Q Consensus 234 ~~~ 236 (244)
+..
T Consensus 212 ~~~ 214 (230)
T PRK07580 212 TER 214 (230)
T ss_pred eee
Confidence 754
No 81
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.51 E-value=6.1e-13 Score=106.46 Aligned_cols=106 Identities=19% Similarity=0.258 Sum_probs=77.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
..++.+|||+|||+|..+..+++... .+++++|+++.++ +.++.+.. ...++..+..+..+ .++..++||+|+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-~~~~~~~~---~~~~i~~~~~d~~~-~~~~~~~~D~i~ 111 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-EVAKKKSE---LPLNIEFIQADAEA-LPFEDNSFDAVT 111 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-HHHHHHhc---cCCCceEEecchhc-CCCCCCcEEEEE
Confidence 34788999999999999999988775 5899999999876 66666543 11223333333322 234456899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++.++ ++ ..+....++++.+.|+|||++++...
T Consensus 112 ~~~~~-~~--~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 112 IAFGL-RN--VTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred Eeeee-CC--cccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 98887 33 33455899999999999999987643
No 82
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.50 E-value=1.4e-13 Score=106.55 Aligned_cols=107 Identities=16% Similarity=0.305 Sum_probs=76.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..++.++||||||.|..++++|++ |.+|+++|+|+.++ +.+++.+...+++ +.....+..+ ... .+.||+|++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al-~~l~~~a~~~~l~--i~~~~~Dl~~-~~~-~~~yD~I~st 101 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVAL-EKLQRLAEEEGLD--IRTRVADLND-FDF-PEEYDFIVST 101 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHH-HHHHHHHHHTT-T--EEEEE-BGCC-BS--TTTEEEEEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHH-HHHHHHHhhcCce--eEEEEecchh-ccc-cCCcCEEEEE
Confidence 346679999999999999999987 88999999999887 6676666666662 3333333322 222 3579999987
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
-++ .+...+...+.++.+...++|||.+++.+.
T Consensus 102 ~v~-~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 102 VVF-MFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp SSG-GGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEe-ccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 666 556667777899999999999998877533
No 83
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.50 E-value=1.8e-12 Score=98.63 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=100.7
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
..+....+....+.+|.+++|+|||||.+++.++..+ ..+|+++|.+++++ +..++|++..+. .++..+.-+--+.+
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-~~~~~N~~~fg~-~n~~vv~g~Ap~~L 97 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-ELIERNAARFGV-DNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCC-CcEEEEeccchHhh
Confidence 3344444555677799999999999999999998555 78999999999987 899999998886 33334433332333
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHH
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF 221 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (244)
+..+ +||.|+.... ..+...++.+...|||||++++..... ++.....
T Consensus 98 ~~~~-~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~naitl------------------------E~~~~a~ 145 (187)
T COG2242 98 PDLP-SPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAITL------------------------ETLAKAL 145 (187)
T ss_pred cCCC-CCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeecH------------------------HHHHHHH
Confidence 3322 7999998654 244588899999999999988762111 3346677
Q ss_pred HHHhhcCC-eEEEec
Q 026036 222 TSCENAGL-EVKHLG 235 (244)
Q Consensus 222 ~~l~~~Gf-~v~~~~ 235 (244)
+.+++.|+ ++.++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 88999999 666553
No 84
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.49 E-value=5.1e-13 Score=103.57 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=108.4
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCC------CCCCccEE
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPI------PNPDWDLI 151 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~fD~I 151 (244)
+|||||||||..+.++|+.. ..+-.-+|.++..+ ..++..+...+.++....+.+|.... -+. ...+||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 69999999999999999887 67788899998754 55555555555544444556655443 222 34589999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCC----eEEEeeeeccCccchhhHHHHHhhc
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWP----AFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+|.+++ |..........++.+.+.|++||.+++ |+.-...+.+..... .++-...+.++..+.+++.+++.++
T Consensus 107 ~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~--YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 107 FCINML-HISPWSAVEGLFAGAARLLKPGGLLFL--YGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAH 183 (204)
T ss_pred eehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEE--eCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHC
Confidence 999999 778888888999999999999996554 444333333221111 1233334556777778899999999
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
||+.+.+.+
T Consensus 184 GL~l~~~~~ 192 (204)
T PF06080_consen 184 GLELEEDID 192 (204)
T ss_pred CCccCcccc
Confidence 999877653
No 85
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.48 E-value=6.2e-13 Score=118.28 Aligned_cols=146 Identities=14% Similarity=0.097 Sum_probs=94.0
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fD~I 151 (244)
....++.+|||||||+|.++..+++. ..+|+++|+++.++ +.++. .++...++..+..+..+ ..++++++||+|
T Consensus 33 l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l-~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 33 LPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVI-KKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred cCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHH-HHHHH---HhccCCceEEEEecccccccCCCCCCEEEE
Confidence 33446779999999999999999876 67999999999987 33322 11221233444444432 245566789999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeE
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEV 231 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v 231 (244)
+++.++ ++...+.+.+.++++.+.|||||.+++...............+|.. .. ....+.+++.++||..
T Consensus 108 ~~~~~l-~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~------~~---~~~~~~~~f~~~~~~~ 177 (475)
T PLN02336 108 FSNWLL-MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTH------YR---EPRFYTKVFKECHTRD 177 (475)
T ss_pred ehhhhH-HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCe------ec---ChHHHHHHHHHheecc
Confidence 999998 4444455779999999999999998876332211100000001110 01 1356777888888876
Q ss_pred EE
Q 026036 232 KH 233 (244)
Q Consensus 232 ~~ 233 (244)
+.
T Consensus 178 ~~ 179 (475)
T PLN02336 178 ED 179 (475)
T ss_pred CC
Confidence 53
No 86
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.48 E-value=4.7e-14 Score=109.45 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=95.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~ 156 (244)
=.++||||||||+.+..+... ..+.+|+|+|++|+ +.+...-.-..+ .. -+....++ ....+||+|++.||
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl-~kA~eKg~YD~L----~~--Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML-AKAHEKGLYDTL----YV--AEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHH-HHHHhccchHHH----HH--HHHHHHhhhccCCcccchhhhhH
Confidence 469999999999999888554 77899999999998 444322111000 00 00001111 23458999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+-+ ..+|...+......|+|||.|++++.....+.+. .+....|+-. ........++..||++..+.+
T Consensus 198 l~Y---lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f--------~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 198 LPY---LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGF--------VLGPSQRYAH-SESYVRALLAASGLEVIAIED 265 (287)
T ss_pred HHh---hcchhhHHHHHHHhcCCCceEEEEecccCCCCCe--------ecchhhhhcc-chHHHHHHHHhcCceEEEeec
Confidence 944 5667788889999999999999997777665331 2222223322 246778899999999998875
Q ss_pred EE
Q 026036 237 RV 238 (244)
Q Consensus 237 ~~ 238 (244)
..
T Consensus 266 tt 267 (287)
T COG4976 266 TT 267 (287)
T ss_pred cc
Confidence 43
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.48 E-value=1.2e-12 Score=102.91 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=79.1
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
...+...+.......++.+|||+|||+|.+++.+++.. +.+|+++|++++++ +.+++|+..++.. ++..+..+..+.
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~-~~a~~n~~~~~~~-~v~~~~~d~~~~ 102 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVV-NLIRRNCDRFGVK-NVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-CeEEEECchHHH
Confidence 33444444555555678899999999999999888654 57999999999987 8888888877662 333333222221
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.....+|.++... ...+.+.++++.+.|+|||++++.
T Consensus 103 ~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred HhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEE
Confidence 222223467665421 123458899999999999998876
No 88
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=105.44 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=81.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~l 157 (244)
..|||+|||||..-.+.-......|+++|.++.|- +.+.+.+..+.- .++....+..++.++ ..++++|+|++..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~me-e~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKME-EIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHH-HHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 36899999999877666444478999999999984 777777776632 344433444455555 567899999999999
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.. .++..+.|+++.++|+|||++++.....
T Consensus 156 CS---ve~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 156 CS---VEDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred ec---cCCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 54 4556699999999999999999884433
No 89
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.47 E-value=3e-12 Score=101.15 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.++.+|||+|||+|..+..++... +.+++|+|+|++++ +.++++.. . +..+..+..+ ++.+++||+|+++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~--~----~~~~~~d~~~--~~~~~sfD~V~~~ 112 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLP--N----INIIQGSLFD--PFKDNFFDLVLTK 112 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCC--C----CcEEEeeccC--CCCCCCEEEEEEC
Confidence 366799999999999999988763 68999999999998 66665432 1 1233333323 4556799999999
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++ |.....+.+.++++.+++ ++.+++.
T Consensus 113 ~vL~-hl~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 113 GVLI-HINPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred Chhh-hCCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 9994 445567889999999987 3555555
No 90
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.46 E-value=7.4e-13 Score=107.06 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+.+|||+|||+|..+..++..+ ..+++++|+++.++ ..++.+.. .++..+..+.. ..++.+++||+|+++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~-~~~~~~~~-----~~~~~~~~d~~-~~~~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGML-AQAKTKLS-----ENVQFICGDAE-KLPLEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHH-HHHHHhcC-----CCCeEEecchh-hCCCCCCceeEEEEhh
Confidence 45799999999999999998876 46799999999886 55554432 12234444433 2344567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
++++. .+..+.+.++.+.|+|||.+++.+.
T Consensus 107 ~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWC---DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 98433 3445899999999999999988743
No 91
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.45 E-value=2.2e-12 Score=102.46 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC------C-CCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI------T-PALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~------~-~~~~~~~ 134 (244)
...+.+++.... ..++.+|||+|||.|..++.+|.+ +.+|+|+|+|+.++...++++...+.. . .+...+.
T Consensus 20 ~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 20 NPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 456666665432 136679999999999999999976 889999999999884322222111000 0 0011233
Q ss_pred eecCCCCCCC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 135 HSWGDAFPIP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 135 ~~~~~~~~~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+..+|..... .+.||.|+-..++ .+...+...+.++.+.++|||||++++.+..
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~-~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAAL-IALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhh-ccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 3344443322 3579999988776 5666666778999999999999987776443
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.45 E-value=3.9e-13 Score=103.06 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=75.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
.-.++||+|||.|.++..+|.. +.+++++|+++.++ +.+++++.. . .++..+..+..+ ..+.++||+|+++.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al-~~Ar~Rl~~--~-~~V~~~~~dvp~--~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRAL-ARARERLAG--L-PHVEWIQADVPE--FWPEGRFDLIVLSEV 115 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHH-HHHHHHTTT----SSEEEEES-TTT-----SS-EEEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHH-HHHHHhcCC--C-CCeEEEECcCCC--CCCCCCeeEEEEehH
Confidence 3458999999999999999887 67899999999987 777665543 2 233444433322 235679999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+....+++..++..+...|+|||.+++.
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g 145 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFG 145 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 999877788999999999999999998887
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.45 E-value=1.5e-12 Score=103.89 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=80.2
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
...+...+.+.....++.+|||+|||+|..+..+++..+ .+|+++|++++++ +.+++|...+++ .++..+..+..+
T Consensus 62 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~-~~A~~~~~~~g~-~~v~~~~~d~~~ 139 (215)
T TIGR00080 62 APHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELA-EKAERRLRKLGL-DNVIVIVGDGTQ 139 (215)
T ss_pred hHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHCCC-CCeEEEECCccc
Confidence 344445555555667889999999999999999988753 4699999999987 888888887776 233333333322
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
.. ....+||+|++.... . .....+.+.|+|||++++.+
T Consensus 140 ~~-~~~~~fD~Ii~~~~~-~--------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GW-EPLAPYDRIYVTAAG-P--------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CC-cccCCCCEEEEcCCc-c--------cccHHHHHhcCcCcEEEEEE
Confidence 21 123579999987654 1 12245778899999988763
No 94
>PLN02672 methionine S-methyltransferase
Probab=99.45 E-value=3.6e-12 Score=120.47 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=102.3
Q ss_pred ceeechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCC------
Q 026036 56 NFLWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGIT------ 127 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~------ 127 (244)
....|.++.+++.+...+. ..++.+|||||||+|.+++.++... ..+|+++|+|+.++ +.+++|+..|++.
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al-~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAV-KVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHcCcccccccc
Confidence 4566778899988543322 2346799999999999999999876 47999999999997 8999999887542
Q ss_pred ---------CCcceEeeecCCCCCCCCCCccEEEEcccccCCcC-----------------------hHH----------
Q 026036 128 ---------PALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQ-----------------------YSN---------- 165 (244)
Q Consensus 128 ---------~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~-----------------------~~~---------- 165 (244)
.++..+..++.+.......+||+||+|.+. -... ...
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPY-I~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQ-ILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCCc-CCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 133444444433332112369999998873 2110 011
Q ss_pred ---HHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHH-HHHhhcCCeEEEecc
Q 026036 166 ---LIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFF-TSCENAGLEVKHLGS 236 (244)
Q Consensus 166 ---l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~Gf~v~~~~~ 236 (244)
..+.+.+..+.|+|||.+++-+ ..+ ..+... +++++.||+...+..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEi---------------------G~~----q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNM---------------------GGR----PGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEE---------------------Ccc----HHHHHHHHHHHHCCCCeeEEee
Confidence 1456677778999999766531 111 124566 477788888766544
No 95
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.45 E-value=1.3e-12 Score=97.98 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=101.5
Q ss_pred hHHHHHHHHhhccC---cccCC-eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 61 GTFSFAEWLMHHRE---WIERR-RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 61 ~~~~l~~~~~~~~~---~~~~~-~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
+-.++.+|+..+.. +.+.+ +|||||||.|.+..-+++.+ ....+|+|+|+.++ +.++..++.++.++.+.+...
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV-~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAV-ELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHH-HHHHHHHHhcCCCcceeEEEe
Confidence 35578888887654 33444 99999999999999998876 55699999999987 777666777777766666666
Q ss_pred ecCCCCCCCCCCccEEEEcccccCC------cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeee
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYV------KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWR 209 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~------~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
+..++ .+..++||+|+--.++ .. .....+...+..+.++|+|||+|+|..
T Consensus 126 DI~~~-~~~~~qfdlvlDKGT~-DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---------------------- 181 (227)
T KOG1271|consen 126 DITDP-DFLSGQFDLVLDKGTL-DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---------------------- 181 (227)
T ss_pred eccCC-cccccceeEEeecCce-eeeecCCCCcccceeeehhhHhhccCCCcEEEEEe----------------------
Confidence 66555 5556788888764443 21 111223456677889999999888751
Q ss_pred eccCccchhhHHHHHhhcCCeEEE
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
..+. .+++.+..+..||++..
T Consensus 182 CN~T---~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 182 CNFT---KDELVEEFENFNFEYLS 202 (227)
T ss_pred cCcc---HHHHHHHHhcCCeEEEE
Confidence 1222 36777777777887654
No 96
>PRK06922 hypothetical protein; Provisional
Probab=99.45 E-value=8.9e-13 Score=117.87 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=79.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I 151 (244)
..++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|+ +.++.+....+. ++..+..+..+ ++ +.+++||+|
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~--~ie~I~gDa~d-Lp~~fedeSFDvV 491 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGR--SWNVIKGDAIN-LSSSFEKESVDTI 491 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCC--CeEEEEcchHh-CccccCCCCEEEE
Confidence 3467899999999999988887765 67999999999998 677666544332 12222222222 23 456789999
Q ss_pred EEcccccCCc----------ChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDILLYVK----------QYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l~~~~----------~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+++.++++.. ....+.+.+++++++|||||++++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9988873221 23567799999999999999999873
No 97
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.45 E-value=2.5e-12 Score=113.25 Aligned_cols=116 Identities=14% Similarity=0.166 Sum_probs=83.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+.+.+.....++.+|||+|||+|.+++.++.. ..+|+++|+|++|+ +.+++|+..+++. ++..+..++.+.
T Consensus 281 ~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al-~~A~~n~~~~~~~-~v~~~~~d~~~~ 357 (443)
T PRK13168 281 VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMV-ERARENARRNGLD-NVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHH-HHHHHHHHHcCCC-ceEEEEeChHHh
Confidence 35677777777666667889999999999999999877 57999999999998 8889999888773 344555454332
Q ss_pred C---CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 F---PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~---~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++.+.+||+|+++.+- .. .. +.++.+.+ ++|++.++++
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr-~g--~~---~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPR-AG--AA---EVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhhhcCCCCEEEECcCC-cC--hH---HHHHHHHh-cCCCeEEEEE
Confidence 2 1234579999986663 32 22 45555555 5788766665
No 98
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.44 E-value=2.3e-12 Score=102.57 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=80.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..+..++.+.....++.+|||+|||+|..+..+++.. ..+|+++|++++++ +.++++....+.. + +.+..+
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~-~~a~~~l~~~g~~-~---v~~~~g 134 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELA-EKAKKTLKKLGYD-N---VEVIVG 134 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCC-C---eEEEEC
Confidence 444555556666666789999999999999998888765 36899999999987 8888888776652 2 334344
Q ss_pred CCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 139 DAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.. .....+||+|++...+ . .. .+.+.+.|||||++++.
T Consensus 135 d~~~~~~~~~~fD~I~~~~~~-~--~~------~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAAG-P--DI------PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcccCCCcCCCcCEEEECCCc-c--cc------hHHHHHhhCCCcEEEEE
Confidence 432 1234689999987654 1 12 23567789999998875
No 99
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=9.2e-13 Score=108.14 Aligned_cols=108 Identities=20% Similarity=0.315 Sum_probs=73.1
Q ss_pred cCCeEEEeCCCCcH----HHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHH----hcCCC---------------
Q 026036 77 ERRRCIELGSGTGA----LAIFLRKAM------NLDITTSDYNDQEIEDNIAYNST----TNGIT--------------- 127 (244)
Q Consensus 77 ~~~~VLdlG~G~G~----~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~----~~~~~--------------- 127 (244)
++.+|||+|||||. +++.+++.. ..+|+|+|+|+.|+ +.+++.+. ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L-~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKAL-EKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHH-HHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45799999999996 455555443 35899999999998 66665321 01111
Q ss_pred ---CCc-ceEeeecCCCC--CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 128 ---PAL-PHIKHSWGDAF--PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 128 ---~~~-~~~~~~~~~~~--~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..+.+...+.. +.+.++||+|+|.+++ ++...+...++++++++.|+|||.+++.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl-~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVL-IYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhH-HhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 000 12233333332 2235689999999998 4445566779999999999999998886
No 100
>PRK05785 hypothetical protein; Provisional
Probab=99.42 E-value=1.3e-12 Score=104.92 Aligned_cols=90 Identities=16% Similarity=0.363 Sum_probs=69.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
++.+|||||||||.++..+++..+.+|+|+|+|++|+ +.++... ..+..+. +.+++.+++||+|+++.+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml-~~a~~~~---------~~~~~d~-~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENML-KMNLVAD---------DKVVGSF-EALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHH-HHHHhcc---------ceEEech-hhCCCCCCCEEEEEecCh
Confidence 3679999999999999999877567999999999998 5554321 1222222 446777889999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCC
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~g 180 (244)
+.+ .++..+.+++++|+|||.
T Consensus 120 l~~---~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHA---SDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhc---cCCHHHHHHHHHHHhcCc
Confidence 833 345669999999999994
No 101
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.42 E-value=2.5e-12 Score=118.85 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=94.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++++|||+|||+|.+++.++..+..+|+++|+|+.++ +.+++|+..|++. .++..+..+..+.+....++||+|++..
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al-~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYL-EWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5789999999999999999987566799999999997 8999999999885 3455554443322221245899999987
Q ss_pred cccCCcC--------hHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 156 ILLYVKQ--------YSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 156 ~l~~~~~--------~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
+.+.... .....+.+..+.++|+|||.+++.. ..... ..-.+.+.++
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~---------------------~~~~~----~~~~~~~~~~ 671 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN---------------------NKRGF----KMDEEGLAKL 671 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe---------------------CCccC----ChhHHHHHhC
Confidence 7533211 2234567788899999999876641 11111 1225677888
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
|+++..+..
T Consensus 672 g~~~~~i~~ 680 (702)
T PRK11783 672 GLKAEEITA 680 (702)
T ss_pred CCeEEEEec
Confidence 998887763
No 102
>PHA03411 putative methyltransferase; Provisional
Probab=99.41 E-value=7.2e-12 Score=101.62 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=91.9
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
|.++=|.+.. ..++.. ...+.+|||+|||+|.+++.++... +.+|+++|+++.++ +.++++.. ++..+
T Consensus 46 G~FfTP~~i~-~~f~~~---~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al-~~Ar~n~~------~v~~v 114 (279)
T PHA03411 46 GAFFTPEGLA-WDFTID---AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFA-RIGKRLLP------EAEWI 114 (279)
T ss_pred eeEcCCHHHH-HHHHhc---cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhCc------CCEEE
Confidence 4455555553 234332 2245699999999999998887765 57999999999987 66666531 11222
Q ss_pred eeecCCCCCCC-CCCccEEEEcccccCCcChHH------------------HHHHHHHHHHhcCCCCceEeecccccCCC
Q 026036 134 KHSWGDAFPIP-NPDWDLILASDILLYVKQYSN------------------LIKSLSVLLKSYKPKDSQVGHLTKNEQGE 194 (244)
Q Consensus 134 ~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~------------------l~~~l~~~~~~lk~gG~~~~~~~~~~~~~ 194 (244)
.++..... ..+||+|++++++++ ....+ +.+.+......|+|+|.+.+..
T Consensus 115 ---~~D~~e~~~~~kFDlIIsNPPF~~-l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y------- 183 (279)
T PHA03411 115 ---TSDVFEFESNEKFDVVISNPPFGK-INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY------- 183 (279)
T ss_pred ---ECchhhhcccCCCcEEEEcCCccc-cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE-------
Confidence 23333222 357999999999854 22211 2456666678888988766541
Q ss_pred CCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 195 GTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
...|. .+.+.+..++.++++++||+..
T Consensus 184 ----ss~~~-------y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 184 ----SGRPY-------YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ----ecccc-------ccccCCHHHHHHHHHhcCcEec
Confidence 11111 1222345899999999999865
No 103
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=7e-12 Score=99.92 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=108.5
Q ss_pred CceEEEEecccCCCC------cceeechHHHHHHHHhhcc---CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCC
Q 026036 40 EMELVIREFAFHQLN------ANFLWPGTFSFAEWLMHHR---EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYN 109 (244)
Q Consensus 40 ~~~~~~~~~~~~~~~------~~~~w~~~~~l~~~~~~~~---~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~ 109 (244)
+.++.+++..+.++. -....|.++.+.+++.+.. ...++..+||+|||+|.+++.++... .+.|+++|.|
T Consensus 102 PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S 181 (328)
T KOG2904|consen 102 PLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVS 181 (328)
T ss_pred ChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEecc
Confidence 366666666655542 1456777999999987653 23455679999999999999987765 6789999999
Q ss_pred hHHHHHHHHHhHHhcCCCCCcceEee----ecCCCCCCCCCCccEEEEcccccCCc-----------------------C
Q 026036 110 DQEIEDNIAYNSTTNGITPALPHIKH----SWGDAFPIPNPDWDLILASDILLYVK-----------------------Q 162 (244)
Q Consensus 110 ~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~fD~I~~~~~l~~~~-----------------------~ 162 (244)
+.++ ..+.+|+..+.+.+.+..+.. ++.++.+...++.|+++||.+.-.+. .
T Consensus 182 ~~Ai-~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG 260 (328)
T KOG2904|consen 182 KAAI-KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEG 260 (328)
T ss_pred HHHH-HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccch
Confidence 9987 888999999988888777744 44455556678999999988753222 1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeec
Q 026036 163 YSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 163 ~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
...+.....-+.|+|+|||.+.+..
T Consensus 261 ~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 261 YDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred hHHHHHHHHhhHhhcccCCeEEEEe
Confidence 2334566667789999999877763
No 104
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.39 E-value=6e-12 Score=105.16 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=95.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEee-ecCCCC---CCCCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKH-SWGDAF---PIPNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~---~~~~~~fD~ 150 (244)
++.+|||||||+|.+...++.+ .+.+++|+|+++.++ +.+++|+..| ++..++..+.. +..+.. ....++||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al-~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQAL-ASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHH-HHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 4679999999999887666554 378999999999987 8999999999 68665544321 111211 123458999
Q ss_pred EEEcccccCCcChHH--HHHHHHHH----------------HHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeecc
Q 026036 151 ILASDILLYVKQYSN--LIKSLSVL----------------LKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRI 212 (244)
Q Consensus 151 I~~~~~l~~~~~~~~--l~~~l~~~----------------~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (244)
|+||.++|....... -.+..+.+ ..++.+||.+.++........ .+.....|+...-...
T Consensus 193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~--~~~~~~gwftsmv~kk 270 (321)
T PRK11727 193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK--AFAKQVLWFTSLVSKK 270 (321)
T ss_pred EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH--HHHhhCcEEEEEeecc
Confidence 999999854332210 01112222 233457777666633222221 1111223565555554
Q ss_pred CccchhhHHHHHhhcCCeEEEecc
Q 026036 213 GKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 213 ~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.. ...+.+.+++.|.....+.+
T Consensus 271 ~~--l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 271 EN--LPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred CC--HHHHHHHHHHcCCceEEEEE
Confidence 33 68999999999996555543
No 105
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.39 E-value=1e-11 Score=97.48 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=86.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~ 155 (244)
++.+|||+|||+|.++..++...+.+++++|++++++ +.++. +++ ..+..+..+.+ ++.+++||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i-~~a~~----~~~----~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGV-LACVA----RGV----NVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHH-HHHHH----cCC----eEEEEEhhhcccccCCCCcCEEEEhh
Confidence 5679999999999999888776677899999999887 44432 122 33444443323 24567899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--------CCCC-CC-CC-eEEEeeeeccCccchhhHHHHH
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--------GTEG-LP-WP-AFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--------~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~~~l 224 (244)
++++. ++..++++++.+.+++ .++..+...... ..+. .. .+ .|......++. +..++.+++
T Consensus 84 ~l~~~---~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~ll 155 (194)
T TIGR02081 84 TLQAT---RNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFC--TIADFEDLC 155 (194)
T ss_pred HhHcC---cCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccC--cHHHHHHHH
Confidence 98433 3455788888876543 344432221000 0000 00 00 11111111232 368999999
Q ss_pred hhcCCeEEEec
Q 026036 225 ENAGLEVKHLG 235 (244)
Q Consensus 225 ~~~Gf~v~~~~ 235 (244)
+++||++.+..
T Consensus 156 ~~~Gf~v~~~~ 166 (194)
T TIGR02081 156 GELNLRILDRA 166 (194)
T ss_pred HHCCCEEEEEE
Confidence 99999998753
No 106
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.39 E-value=2.9e-12 Score=100.45 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=82.6
Q ss_pred eechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
+.|.+..+.+.+.... ...++.+|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..+++. ++..+..+
T Consensus 33 ~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~-~~a~~Nl~~~~~~-~v~~~~~D 110 (199)
T PRK10909 33 LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVA-QQLIKNLATLKAG-NARVVNTN 110 (199)
T ss_pred cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEEch
Confidence 3567776655544432 2246789999999999999876555678999999999987 8888998888763 34444434
Q ss_pred cCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHH--hcCCCCceEee
Q 026036 137 WGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLK--SYKPKDSQVGH 186 (244)
Q Consensus 137 ~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~--~lk~gG~~~~~ 186 (244)
..+.++....+||+|+++.++ .....+ .+++.+.. .++|++.+++.
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy-~~g~~~---~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPF-RKGLLE---ETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHHHHhhcCCCceEEEECCCC-CCChHH---HHHHHHHHCCCcCCCcEEEEE
Confidence 333222223469999998884 443333 44444444 47888877665
No 107
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=2.2e-11 Score=99.84 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=77.3
Q ss_pred ceeechH-HHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 56 NFLWPGT-FSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 56 ~~~w~~~-~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
..+|..- -.|+..++. ...+.++.+|||||||+|..+..++... ..+|+++|+++.++.+.+.......++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI--- 183 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNI--- 183 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCC---
Confidence 5667552 355544433 2456789999999999999999999886 357999999987653333322222222
Q ss_pred cceEeeecCCC--CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDA--FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+..+..++ .....++||+|++... . ..+...++.++.+.|||||++++.
T Consensus 184 -~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 184 -VPIIEDARYPQKYRMLVPMVDVIFADVA--Q---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -EEEECCccChhhhhcccCCCCEEEEeCC--C---cchHHHHHHHHHHhccCCCEEEEE
Confidence 2333332221 1122357999988442 2 223335556889999999998885
No 108
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=3.7e-12 Score=100.04 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=75.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
.+.+|||||||+|.++..++... ..+|+|+|+++.++ +.+++++...++. ++..+..+..+... ..++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l-~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV-LAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHH-HHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45699999999999999998876 56899999999987 7777777766663 34444333322111 23458999998
Q ss_pred cccccCCcC-h----HHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ-Y----SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~-~----~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+..+... . -.....+++++++|||||.+++.
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 754322111 1 00137889999999999999887
No 109
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.36 E-value=1.6e-11 Score=97.86 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=81.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC-------CCCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------TPALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~-------~~~~~~~~ 134 (244)
...|.+++... ...++.+|||+|||.|..++.+|.+ +.+|+|+|+|+.++....+++...+.. ......+.
T Consensus 23 ~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 100 (218)
T PRK13255 23 NPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT 100 (218)
T ss_pred CHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE
Confidence 34555555432 2235679999999999999999976 889999999999884333222111000 00011233
Q ss_pred eecCCCCCC---CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 135 HSWGDAFPI---PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 135 ~~~~~~~~~---~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
+..+|.... ..+.||.|+-..++ .+...+...+.++.+.++|+|||++++.+
T Consensus 101 ~~~~D~~~l~~~~~~~fd~v~D~~~~-~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 101 IYCGDFFALTAADLADVDAVYDRAAL-IALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred EEECcccCCCcccCCCeeEEEehHhH-hhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 334444333 23579999988776 55666667799999999999999866653
No 110
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.36 E-value=8.5e-12 Score=96.48 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=78.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+..-|||||||+|+.+..+... +...+|+|+|+.|+..+.++.++ + ..+..+.++.+++..+.||-+|+...
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e--g-----dlil~DMG~GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE--G-----DLILCDMGEGLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh--c-----CeeeeecCCCCCCCCCccceEEEeee
Confidence 4668999999999999888765 57899999999998443333322 1 35667888999999999999998776
Q ss_pred ccCC---------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYV---------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~---------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ ++ .....+...+..++.+|++|++.++.
T Consensus 122 v-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 122 V-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred e-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 6 22 23445667788899999999998876
No 111
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.36 E-value=2e-11 Score=97.26 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+..++.......++.+|||+|||+|..+..++.. ..+|+++|++++++ +.++++....++.. +..+..+..+..
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~-~~a~~~~~~~~~~~-v~~~~~d~~~~~ 139 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQ-WEAKRRLKQLGLHN-VSVRHGDGWKGW 139 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHH-HHHHHHHHHCCCCc-eEEEECCcccCC
Confidence 3444555555556668889999999999999888776 45899999999886 77888877665522 333322222211
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+ ..++||+|++...+ . ...+.+.+.|+|||++++.+.
T Consensus 140 ~-~~~~fD~I~~~~~~-~--------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 P-AYAPFDRILVTAAA-P--------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred C-cCCCcCEEEEccCc-h--------hhhHHHHHhcCCCcEEEEEEc
Confidence 1 23689999997654 1 123457889999999888643
No 112
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.35 E-value=9.1e-12 Score=107.51 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=77.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC---CCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP---IPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~fD~I~ 152 (244)
++++|||+|||+|.+++.++..+..+|+++|+++.++ +.+++|+..|++. .++..+..+..+.+. ...++||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al-~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEAL-DIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 6789999999999999887765566999999999987 8899999999884 244444433322221 1235799999
Q ss_pred EcccccCCcChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+. ...... ...+.++...++|+|||.++..
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 98776 333322 2334455678999999977654
No 113
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.35 E-value=1.8e-11 Score=103.16 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=68.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.++.+|||+|||+|.+++.++.. +.+|+|+|+++.++ +.+++|+..+++ .++..+..+..+......+.||+|+++.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av-~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAI-ACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHH-HHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECC
Confidence 35689999999999999999986 57999999999998 888999988887 3344444333222221234699999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- .. ... .+++.+ ..++|++.++++
T Consensus 249 Pr-~G-~~~---~~~~~l-~~~~~~~ivyvs 273 (315)
T PRK03522 249 PR-RG-IGK---ELCDYL-SQMAPRFILYSS 273 (315)
T ss_pred CC-CC-ccH---HHHHHH-HHcCCCeEEEEE
Confidence 62 21 122 333333 335676654444
No 114
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=1e-11 Score=102.58 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
...+++.+..... .++.+|||+|||+|.++..++... +.+|+|+|+|+.++ +.++++. . .+..+..+.
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l-~~A~~~~--~----~~~~~~~d~ 142 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAI-KYAAKRY--P----QVTFCVASS 142 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHH-HHHHHhC--C----CCeEEEeec
Confidence 3444444443322 245689999999999998887654 24799999999987 5554432 1 122333332
Q ss_pred CCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 138 GDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 138 ~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
..+++.+++||+|++... + ..++++.++|||||+++++++..
T Consensus 143 -~~lp~~~~sfD~I~~~~~-------~---~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 143 -HRLPFADQSLDAIIRIYA-------P---CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -ccCCCcCCceeEEEEecC-------C---CCHHHHHhhccCCCEEEEEeCCC
Confidence 335667789999998533 1 23467899999999999875543
No 115
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.33 E-value=1.6e-11 Score=102.79 Aligned_cols=108 Identities=12% Similarity=0.078 Sum_probs=72.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC----CccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP----DWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fD~ 150 (244)
++.+|||+|||+|..+..+++.. +.+|+++|+|++|+ +.+++++.......++..+..+..+..+.... ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL-~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL-KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH-HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 56799999999999999888776 57899999999998 56655544322111222233333332222222 2234
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++..++ ++...++....++++++.|+|||.+++.
T Consensus 142 ~~~gs~~-~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTI-GNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccc-cCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 4444555 4455677889999999999999999875
No 116
>PLN03075 nicotianamine synthase; Provisional
Probab=99.33 E-value=2.4e-11 Score=99.94 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=74.3
Q ss_pred cCCeEEEeCCCCcHH-HHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGAL-AIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~-~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
++++|+|||||.|.+ ++.++... +.+++++|++++++ +.+++++.. .++..++.+...+..+..+ ..+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai-~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSAN-DVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEE
Confidence 678999999997744 45454332 67899999999987 788877743 5565555555444433211 246899999
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ++.+. ..++-.+.++++++.|+|||.+++-
T Consensus 201 ~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 201 LA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred Ee-ccccc-ccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99 55232 2234459999999999999988876
No 117
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.33 E-value=2.3e-11 Score=104.71 Aligned_cols=115 Identities=11% Similarity=0.024 Sum_probs=75.0
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.......++.+|||+|||+|.+++.++.. +.+|+++|+++.++ +.+++|+..++++ ++..+..+..+.+.
T Consensus 219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av-~~a~~N~~~~~~~-~~~~~~~d~~~~~~ 295 (374)
T TIGR02085 219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAI-ACAQQSAQMLGLD-NLSFAALDSAKFAT 295 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHHHH
Confidence 334343333323335679999999999999999865 57899999999997 8899999888873 34444433322222
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+||+|++..+- . ...+ ++++.+. .++|++.++++
T Consensus 296 ~~~~~~D~vi~DPPr-~-G~~~---~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 296 AQMSAPELVLVNPPR-R-GIGK---ELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred hcCCCCCEEEECCCC-C-CCcH---HHHHHHH-hcCCCeEEEEE
Confidence 122469999997663 3 2223 4445554 36788765554
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.8e-11 Score=94.08 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
+...+...+.+...+.++.+|||||||+|..+-.+++. ..+|+.+|..++- .+.+++|....+.. .+....+|.
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L-~~~A~~~L~~lg~~----nV~v~~gDG 129 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEEL-AEQARRNLETLGYE----NVTVRHGDG 129 (209)
T ss_pred cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHH-HHHHHHHHHHcCCC----ceEEEECCc
Confidence 45555666666777889999999999999999999887 4499999999874 48889998888773 245555554
Q ss_pred CCC-C-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 141 FPI-P-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 141 ~~~-~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
... + ..+||.|+.+... ...+ +.+.+.||+||++++-+-
T Consensus 130 ~~G~~~~aPyD~I~Vtaaa---~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 130 SKGWPEEAPYDRIIVTAAA---PEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCCCCCcCEEEEeecc---CCCC------HHHHHhcccCCEEEEEEc
Confidence 332 2 3589999998776 3344 236788999999887643
No 119
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.31 E-value=3.5e-11 Score=96.03 Aligned_cols=165 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred cceeechHHHHHHHHhhcc----CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 55 ANFLWPGTFSFAEWLMHHR----EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~----~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
|.++--+...+.+++.... ......++||||+|.|.++..++.. -.+|++||.|..|. ..+++ .+.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr-~rL~~----kg~---- 137 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMR-WRLSK----KGF---- 137 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHH-HHHHh----CCC----
Confidence 4455556667777665431 2235678999999999999999775 66799999999885 43332 222
Q ss_pred ceE-eeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc-cCCCCCC--CCCCCeEEE
Q 026036 131 PHI-KHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN-EQGEGTE--GLPWPAFLM 206 (244)
Q Consensus 131 ~~~-~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~-~~~~~~~--~~~~~~~~~ 206 (244)
..+ ..+|.+ .+.+||+|.|.+++ ..... ....++.+++.|+|+|++++.+.-+ ......- ....|.-.+
T Consensus 138 ~vl~~~~w~~----~~~~fDvIscLNvL-DRc~~--P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l 210 (265)
T PF05219_consen 138 TVLDIDDWQQ----TDFKFDVISCLNVL-DRCDR--PLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL 210 (265)
T ss_pred eEEehhhhhc----cCCceEEEeehhhh-hccCC--HHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc
Confidence 111 122432 24579999999999 55443 4489999999999999998882222 1111000 011111111
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
......-.+....|.+.++-+||+++....
T Consensus 211 ~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 211 PVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 111111112245667889999999998764
No 120
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=2.2e-11 Score=95.54 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=99.6
Q ss_pred eEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEEEE
Q 026036 80 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLILA 153 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I~~ 153 (244)
+|||+|||.|.....+.+-. +..|.+.|.|+.++ +..+.+...+.. ++.....+...+ .+...+++|.|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai-~~vk~~~~~~e~--~~~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI-ELVKKSSGYDES--RVEAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH-HHHHhccccchh--hhcccceeccchhccCCCCcCccceEEE
Confidence 89999999999887776654 36799999999987 777776654432 222222222211 2334568999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCe----EEEee---eeccCccchhhHHHHHhh
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPA----FLMSW---RRRIGKEDETIFFTSCEN 226 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~l~~ 226 (244)
..++ ..-..+....++.++.++|||||.+++-.++.-+..+.-+..... +++.. +..+.. .+.+.+++.+
T Consensus 151 IFvL-SAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~--~eeL~~~f~~ 227 (264)
T KOG2361|consen 151 IFVL-SAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFT--EEELDELFTK 227 (264)
T ss_pred EEEE-eccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeecc--HHHHHHHHHh
Confidence 9998 766777888999999999999999888755543322111111111 11111 112222 4677788999
Q ss_pred cCCeEEEec
Q 026036 227 AGLEVKHLG 235 (244)
Q Consensus 227 ~Gf~v~~~~ 235 (244)
+||+.++..
T Consensus 228 agf~~~~~~ 236 (264)
T KOG2361|consen 228 AGFEEVQLE 236 (264)
T ss_pred cccchhccc
Confidence 999877664
No 121
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=95.59 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=76.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I 151 (244)
...+..+|.|||||+|..+..++++. .++++|+|-|++|+ +.++...- ...+..+|.-.+ +.+.+|++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Ml-a~Aa~rlp---------~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML-AKAAQRLP---------DATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHH-HHHHHhCC---------CCceecccHhhcCCCCccchh
Confidence 44566799999999999999998887 78999999999998 44433211 112222333222 24579999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccccc
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNE 191 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~ 191 (244)
++|.++ ++ .++-.+.+.++...|.|||.+.+..+++.
T Consensus 97 faNAvl-qW--lpdH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 97 FANAVL-QW--LPDHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhhh-hh--ccccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 999999 44 23334899999999999999999866553
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.30 E-value=1.1e-10 Score=92.55 Aligned_cols=99 Identities=10% Similarity=0.122 Sum_probs=67.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-------CCCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-------PIPN 145 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 145 (244)
..++.+|||||||+|..+..+++.. ..+|+++|+++ +. .. ..+..+..+..+.. +...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----------~~-~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----------PI-VGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----------CC-CCcEEEecCCCChHHHHHHHHHhCC
Confidence 4578899999999999999988875 35899999987 21 11 11234444443321 1345
Q ss_pred CCccEEEEcccccCCcCh--H------HHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQY--S------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~--~------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+++.+.+..... + ....+++.+.++|||||++++.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 689999997655332211 1 1246889999999999998875
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=1.5e-10 Score=101.44 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=77.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I 151 (244)
...+|.+|||+|||+|..+..++.... .+|+++|+++.++ +.+++|+..++.. +..+..+..+... ...++||.|
T Consensus 241 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l-~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 241 APQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRL-ERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred CCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 345788999999999999999988764 6999999999987 8888888887762 2233323222111 124579999
Q ss_pred EEcccccCC------------cChHH-------HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------------KQYSN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------------~~~~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.... ....+ ..+.+..+.+.|||||+++++
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 975543110 01111 236889999999999998876
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=1.9e-11 Score=98.67 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=78.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----CC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PN 145 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 145 (244)
....++++|||+|||+|..++.++... ..+|+++|++++++ +.+++|...+++..++..+..+..+.++. ..
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~-~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY-EVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCC
Confidence 344467899999999999888777654 57899999999986 88999999988865555544433332221 13
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++||+|+.- .- .++....+..+.+.++|||.+++.
T Consensus 143 ~~fD~VfiD-a~-----k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 143 PEFDFAFVD-AD-----KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCEEEEC-CC-----HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 589999873 22 345558888999999999987765
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=1.1e-10 Score=102.84 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=77.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+|||+|||+|..++.++... ..+|+++|+++.++ +.+++|+..+++.. +..+..+..+......++||+|
T Consensus 247 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 247 DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEE
Confidence 34577899999999999999998764 57899999999987 88888988887732 3333333322211112679999
Q ss_pred EEcccccCCc------------ChHH-------HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVK------------QYSN-------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~------------~~~~-------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+..... .... ..+.++.+.+.|||||+++.+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9865421100 0011 135788999999999998865
No 126
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.5e-10 Score=91.98 Aligned_cols=106 Identities=21% Similarity=0.257 Sum_probs=79.8
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-C
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-N 145 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 145 (244)
+.....+.+|++|||.|.|+|.++.+++... ..+|+..|+.++.+ +.+++|+...++.++ +.+..+|..... .
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~-k~A~~Nl~~~~l~d~---v~~~~~Dv~~~~~~ 161 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFA-KTARENLSEFGLGDR---VTLKLGDVREGIDE 161 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHH-HHHHHHHHHhccccc---eEEEeccccccccc
Confidence 3444577899999999999999999998654 46899999999986 889999988777544 333334432222 2
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..||.|+. | .++..+.++.+...|||||.+++-
T Consensus 162 ~~vDav~L-D-------mp~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 162 EDVDAVFL-D-------LPDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccCEEEE-c-------CCChHHHHHHHHHHhCCCcEEEEE
Confidence 37999886 2 345668999999999999987664
No 127
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=99.72 Aligned_cols=108 Identities=16% Similarity=0.106 Sum_probs=78.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~~ 154 (244)
.+..+||||||+|...+.+|+.. ...++|+|+++.++ +.+.+++..++++ ++..+..+.... ..+.++++|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i-~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSI-EQVLKQIELLNLK-NLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45699999999999999999886 57899999999987 6777777777663 234443333221 13456789999997
Q ss_pred ccccCCcChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+..+..... .....+++++++|+|||.+.+.
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 6652221111 1247899999999999999887
No 128
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.24 E-value=7.6e-11 Score=92.14 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.+.+.........++.+|||+|||+|.++..++... ..+|+++|+++.+ ...+ +..+..+..+..
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~----i~~~~~d~~~~~ 85 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIEN----VDFIRGDFTDEE 85 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCC----ceEEEeeCCChh
Confidence 455555555666789999999999999998888765 4579999999843 1111 233333333211
Q ss_pred -------CCCCCCccEEEEcccccC-----C---cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 142 -------PIPNPDWDLILASDILLY-----V---KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 -------~~~~~~fD~I~~~~~l~~-----~---~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....++||+|++..+.+. . .......++++.+.+.|+|||++++.
T Consensus 86 ~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 86 VLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 123457999998643210 0 11122358899999999999998875
No 129
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.24 E-value=1.6e-10 Score=90.20 Aligned_cols=175 Identities=14% Similarity=0.093 Sum_probs=111.7
Q ss_pred ceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 026036 41 MELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~ 120 (244)
+++.|.-..-+.+-+...|..+..=++. ....+|.+|||-+.|-|..++.++++++.+|..++.+++.+ +.+..|
T Consensus 102 PTiEIdGIrMhrt~~tdP~~Dt~~Kv~~----V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-eLa~lN 176 (287)
T COG2521 102 PTIEIDGIRMHRTKGTDPLEDTLAKVEL----VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-ELAKLN 176 (287)
T ss_pred CeEEEccEEEecccCcCcHHHHHhhhhe----eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-EeeccC
Confidence 4444443333333344455554333222 24557999999999999999999998777999999999876 777666
Q ss_pred HHhcCCCCCcceEeeecCCCC----CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC
Q 026036 121 STTNGITPALPHIKHSWGDAF----PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT 196 (244)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~ 196 (244)
-...++... .+.+..+|.. .+.+++||+|+--.+=|.....---...-++++|+|||||+++.-+.++
T Consensus 177 PwSr~l~~~--~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P------ 248 (287)
T COG2521 177 PWSRELFEI--AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP------ 248 (287)
T ss_pred CCCcccccc--ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC------
Confidence 555444211 2344444432 3567899999864443332221122377799999999999987542221
Q ss_pred CCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEeccEEE
Q 026036 197 EGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGSRVY 239 (244)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~ 239 (244)
-++.++.+-.....+.|++.||+++..-.+.+
T Consensus 249 -----------g~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 249 -----------GKRYRGLDLPKGVAERLRRVGFEVVKKVREAL 280 (287)
T ss_pred -----------CcccccCChhHHHHHHHHhcCceeeeeehhcc
Confidence 22334444457888999999999766655554
No 130
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.24 E-value=1.2e-10 Score=102.44 Aligned_cols=117 Identities=13% Similarity=0.164 Sum_probs=78.3
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..+.+.+.......++.+|||+|||+|.+++.+++. ..+|+++|+++.++ +.+++|+..+++. ++..+..+..+.
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av-~~a~~n~~~~~~~-nv~~~~~d~~~~ 352 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESV-EKAQQNAELNGIA-NVEFLAGTLETV 352 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHH-HHHHHHHHHhCCC-ceEEEeCCHHHH
Confidence 34556666655555556789999999999999999876 67899999999997 8899999888773 344444333221
Q ss_pred CC---CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ ....+||+|++..+- . .... .+++.+.+ ++|++.++++
T Consensus 353 l~~~~~~~~~~D~vi~dPPr-~-G~~~---~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 353 LPKQPWAGQIPDVLLLDPPR-K-GCAA---EVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHHhcCCCCCEEEECcCC-C-CCCH---HHHHHHHh-cCCCEEEEEc
Confidence 11 223579999985552 2 1123 44454443 7787755554
No 131
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.24 E-value=1.4e-10 Score=80.43 Aligned_cols=103 Identities=21% Similarity=0.253 Sum_probs=71.5
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
+|+|+|||+|..+..++.....+++++|+++.++ ..+++....+. ...+..+..+..+......++||+|+++.+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVAL-ELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 5899999999999888774578999999999876 55553222222 123334444443332223468999999998833
Q ss_pred CcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .......++.+.+.++|||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 345568889999999999987764
No 132
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.23 E-value=3.4e-11 Score=99.63 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=81.1
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCc
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
+.++...++++.|||+|||||.+++++|+.++.+|+++|.|.- .+.+++.+..|++...+..+.....+. ..+.++.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~i--a~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKV 128 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSI--ADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKV 128 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHH--HHHHHHHHHhcCccceEEEeecceEEE-ecCccce
Confidence 5556678899999999999999999999999999999999874 378888888999877666665444332 3446789
Q ss_pred cEEEEcccccCCcChHHHH-HHHHHHHHhcCCCCceE
Q 026036 149 DLILASDILLYVKQYSNLI-KSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~-~~l~~~~~~lk~gG~~~ 184 (244)
|+|++-.+=|. .-.+... ..+-+=-+.|+|||.++
T Consensus 129 DiIvSEWMGy~-Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 129 DIIVSEWMGYF-LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eEEeehhhhHH-HHHhhhhhhhhhhhhhccCCCceEc
Confidence 99999544321 2223222 33333347899999654
No 133
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=7.2e-11 Score=92.13 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=79.0
Q ss_pred eeechHHHHHHHHhhcc-CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 57 FLWPGTFSFAEWLMHHR-EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~-~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
...|....+-+.+.... ...++.+|||++||+|.+++.++.++..+|+++|.++.++ +.+++|+..++...++..+..
T Consensus 28 ~~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-~~~~~N~~~~~~~~~~~~~~~ 106 (189)
T TIGR00095 28 STRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-QTLKENLALLKSGEQAEVVRN 106 (189)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHhCCcccEEEEeh
Confidence 34455544444333221 2347889999999999999999988777999999999987 888999998887544444443
Q ss_pred ecCCCCC-C-CCCC-ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWGDAFP-I-PNPD-WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~-~-~~~~-fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..+.+. . ...+ ||+|+ .|+-|.....+.+...+.+ ...++++|.+++-
T Consensus 107 D~~~~l~~~~~~~~~~dvv~-~DPPy~~~~~~~~l~~l~~-~~~l~~~~iiv~E 158 (189)
T TIGR00095 107 SALRALKFLAKKPTFDNVIY-LDPPFFNGALQALLELCEN-NWILEDTVLIVVE 158 (189)
T ss_pred hHHHHHHHhhccCCCceEEE-ECcCCCCCcHHHHHHHHHH-CCCCCCCeEEEEE
Confidence 3322221 1 1223 55555 5666554444433333322 2467788855543
No 134
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=2.6e-10 Score=95.80 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
.+..++.+.....++.+|||+|||+|.++..+++..+ .+|+++|++++++ +.+++++..++.. ++..+..+..+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l-~~Ar~~l~~~g~~-nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKIC-EIAKRNVRRLGIE-NVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEeCChhhcc
Confidence 3444444445566788999999999999999988764 3699999999987 7888888777662 2333322221111
Q ss_pred CCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 142 PIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
....+||+|++...+ + .....+.+.|+|||++++..
T Consensus 145 -~~~~~fD~Ii~~~g~------~---~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 -PEFAPYDVIFVTVGV------D---EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -cccCCccEEEECCch------H---HhHHHHHHhcCCCCEEEEEe
Confidence 123579999986544 1 11234678899999988753
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=3.9e-10 Score=99.11 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f 148 (244)
...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++.. +..+..+..+... ...++|
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 44578899999999999999998875 45899999999987 88888988887732 3333333222111 224589
Q ss_pred cEEEEccc------ccCCcC------hH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDI------LLYVKQ------YS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~------l~~~~~------~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.|++..+ +..+.. .. ...+.+.++.+.|||||+++.+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA 383 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99997432 211111 01 1347889999999999998766
No 136
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.21 E-value=1.4e-10 Score=92.87 Aligned_cols=123 Identities=27% Similarity=0.490 Sum_probs=91.2
Q ss_pred cceeechHHHHHHHHhhccC------ccc-----CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh---
Q 026036 55 ANFLWPGTFSFAEWLMHHRE------WIE-----RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN--- 120 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~------~~~-----~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~--- 120 (244)
...+|+.+..++.++..+.. ... ..+|||||+|||..++.+|.....+|+.+|..... ..++.|
T Consensus 53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~--~~L~~~~~~ 130 (248)
T KOG2793|consen 53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV--ENLKFNRDK 130 (248)
T ss_pred eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhH--HHHHHhhhh
Confidence 68899999999988876543 122 34699999999999999998889999999998642 333333
Q ss_pred --HHhcCCCCCcceEeeecCCCCCC--CCCC-ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 121 --STTNGITPALPHIKHSWGDAFPI--PNPD-WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 121 --~~~~~~~~~~~~~~~~~~~~~~~--~~~~-fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
...+.....+....++|++.... ..+. ||+|+++|++|.....+.++++++.+.. .+|.
T Consensus 131 ~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~---~~~~ 194 (248)
T KOG2793|consen 131 NNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLA---KDGT 194 (248)
T ss_pred hhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHh---cCCe
Confidence 33444444677788999977543 2334 9999999999999999988888665544 5553
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=7.7e-11 Score=93.08 Aligned_cols=113 Identities=18% Similarity=0.287 Sum_probs=75.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
+...+...+++...+.+|.+|||||||+|..+-.++...+ .+|+++|..+..+ +.+++|+...+.. .+.+..+
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~-~~A~~~l~~~~~~----nv~~~~g 130 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELA-ERARRNLARLGID----NVEVVVG 130 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHH-HHHHHHHHHHTTH----SEEEEES
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHH-HHHHHHHHHhccC----ceeEEEc
Confidence 4445555666666788999999999999999988887754 3699999999865 8888888877662 3333333
Q ss_pred CCCC-C-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 139 DAFP-I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 139 ~~~~-~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
|... . ...+||.|++.... ...+ ..+.+.|++||++++-+
T Consensus 131 dg~~g~~~~apfD~I~v~~a~---~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAV---PEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBB---SS--------HHHHHTEEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeecc---chHH------HHHHHhcCCCcEEEEEE
Confidence 3321 1 23479999998777 2333 23678899999988763
No 138
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.3e-10 Score=99.28 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=77.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
.+.+|.+|||+|||+|..+.+++... ..+|+++|+++.++ +.+++|+...+++ .+..+..+..+......++||.|
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEE
Confidence 44578899999999999999988775 57899999999997 8888888887763 23333333222111234679999
Q ss_pred EEcccccCC---cChH----------------HHHHHHHHHHHhcCCCCceEeec
Q 026036 152 LASDILLYV---KQYS----------------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 152 ~~~~~l~~~---~~~~----------------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
++..+.... ...+ ...+.+.++.+.|||||+++.++
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 974332110 0001 12467889999999999988773
No 139
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.18 E-value=1.8e-10 Score=92.04 Aligned_cols=159 Identities=14% Similarity=0.071 Sum_probs=94.1
Q ss_pred eeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc--CCCCCcceEe
Q 026036 57 FLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GITPALPHIK 134 (244)
Q Consensus 57 ~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~--~~~~~~~~~~ 134 (244)
+++.++..|...+.......++.+|||+|||+|.++..+++.+..+|+++|++++|+...++.+.... +.. + ...
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~-n--i~~ 131 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERT-N--IRY 131 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecC-C--ccc
Confidence 56678888888887766556888999999999999999998877789999999988755454443210 110 1 112
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee-cccccCCCCCCCCCCCeEEEeeeeccC
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH-LTKNEQGEGTEGLPWPAFLMSWRRRIG 213 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (244)
..|.+.. ..-..+|+++++.. ..+..+.+.|+| |.+++. -+.++-..... ..... ......+..
T Consensus 132 ~~~~~~~-~d~~~~DvsfiS~~-----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~-~~~gi-v~~~~~~~~ 196 (228)
T TIGR00478 132 VTPADIF-PDFATFDVSFISLI-----------SILPELDLLLNP-NDLTLLFKPQFEAGREKK-NKKGV-VRDKEAIAL 196 (228)
T ss_pred CCHhHcC-CCceeeeEEEeehH-----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhc-CcCCe-ecCHHHHHH
Confidence 3343321 11125666555432 346678888899 766655 33332211111 00011 111111111
Q ss_pred ccchhhHHHHHhhcCCeEEEec
Q 026036 214 KEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 214 ~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
-...+...+.+.||++..+.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~ 216 (228)
T TIGR00478 197 --ALHKVIDKGESPDFQEKKII 216 (228)
T ss_pred --HHHHHHHHHHcCCCeEeeEE
Confidence 13566777888899887653
No 140
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.18 E-value=2.5e-10 Score=92.10 Aligned_cols=142 Identities=14% Similarity=0.222 Sum_probs=95.2
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCC-CC
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFP-IP 144 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 144 (244)
+.....+.+|.+|||-|.|+|.++.++++.. ..+|+..|+.++.+ +.+++|....++...+....-|..+ ... ..
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-EKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-HHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 4445678899999999999999999998765 46899999999986 8899999998886655555555532 221 12
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhc-CCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSY-KPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~l-k~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
...+|.|+. |+- +....+..+.+.| ++||++++. .+... ......+.
T Consensus 111 ~~~~DavfL-Dlp-------~Pw~~i~~~~~~L~~~gG~i~~f----------------------sP~ie--Qv~~~~~~ 158 (247)
T PF08704_consen 111 ESDFDAVFL-DLP-------DPWEAIPHAKRALKKPGGRICCF----------------------SPCIE--QVQKTVEA 158 (247)
T ss_dssp TTSEEEEEE-ESS-------SGGGGHHHHHHHE-EEEEEEEEE----------------------ESSHH--HHHHHHHH
T ss_pred cCcccEEEE-eCC-------CHHHHHHHHHHHHhcCCceEEEE----------------------CCCHH--HHHHHHHH
Confidence 357999886 332 3336778889999 899976653 22222 24677788
Q ss_pred HhhcCCeEEE---eccEEEEEec
Q 026036 224 CENAGLEVKH---LGSRVYCIKL 243 (244)
Q Consensus 224 l~~~Gf~v~~---~~~~~~~~~~ 243 (244)
|+++||...+ +-.|.|-+.+
T Consensus 159 L~~~gf~~i~~~Evl~R~~~v~~ 181 (247)
T PF08704_consen 159 LREHGFTDIETVEVLLREWEVRP 181 (247)
T ss_dssp HHHTTEEEEEEEEEEEEEEEEET
T ss_pred HHHCCCeeeEEEEEEeeEEEEEe
Confidence 9999996543 3455565543
No 141
>PRK04457 spermidine synthase; Provisional
Probab=99.18 E-value=1.2e-10 Score=95.55 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
++.+|||||||+|.++..+++.. ..+|+++|++++++ +.++++...+....++..+..+..+.+....++||+|++ |
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~-D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVI-AVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV-D 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE-e
Confidence 45799999999999999887765 67899999999987 777777554333233333332222222223458999997 3
Q ss_pred cccCCcChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+ .....+ .....++.+.+.|+|||++++.
T Consensus 144 ~~-~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GF-DGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CC-CCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 32 322111 1248899999999999998875
No 142
>PHA03412 putative methyltransferase; Provisional
Probab=99.17 E-value=8.8e-10 Score=87.62 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=64.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I 151 (244)
.+.+|||+|||+|.+++.++++. ..+|+++|+++.++ +.+++|... +..+ ++|.... .+++||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al-~~Ar~n~~~------~~~~---~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYY-KLGKRIVPE------ATWI---NADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHH-HHHHhhccC------CEEE---EcchhcccccCCccEE
Confidence 36799999999999999988753 45899999999987 777766421 1222 2333221 24589999
Q ss_pred EEcccccCCcC---------hHHHHHHHHHHHHhcCCCC
Q 026036 152 LASDILLYVKQ---------YSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 152 ~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG 181 (244)
|+|.+++.... .....+.++.+.+++++|+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99999852211 1223467788888666554
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.16 E-value=4.5e-10 Score=98.54 Aligned_cols=119 Identities=14% Similarity=0.160 Sum_probs=80.4
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
++..++..+ .+.+|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +.+++|+...++. +. +....++
T Consensus 226 ~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l-~~~~~n~~r~g~~--~~-v~~~~~d 297 (426)
T TIGR00563 226 SAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRL-KRVYENLKRLGLT--IK-AETKDGD 297 (426)
T ss_pred HHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHHHHHcCCC--eE-EEEeccc
Confidence 344444443 44578899999999999999998865 47899999999987 8888898887773 11 1112222
Q ss_pred CC--CC--CCCCccEEEEcc------cccCCcC------hH-------HHHHHHHHHHHhcCCCCceEeec
Q 026036 140 AF--PI--PNPDWDLILASD------ILLYVKQ------YS-------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 140 ~~--~~--~~~~fD~I~~~~------~l~~~~~------~~-------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
.. +. ..++||.|++.. ++..+.. .. ...+.+.++.++|||||++++++
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 21 11 345799999632 2211111 00 12478899999999999998873
No 144
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=1.4e-09 Score=95.84 Aligned_cols=125 Identities=20% Similarity=0.126 Sum_probs=82.3
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+++.+..++..++ ...+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+...++. .+..+
T Consensus 232 ~~vqd~~s~l~~~~l---~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~-~v~~~ 306 (445)
T PRK14904 232 VSVQNPTQALACLLL---NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGIT-IIETI 306 (445)
T ss_pred EEEeCHHHHHHHHhc---CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCC-eEEEE
Confidence 345554555544443 34578899999999999998887654 46899999999997 8888888877763 23333
Q ss_pred eeecCCCCCCCCCCccEEEEccc------ccCC------cChH-------HHHHHHHHHHHhcCCCCceEeec
Q 026036 134 KHSWGDAFPIPNPDWDLILASDI------LLYV------KQYS-------NLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 134 ~~~~~~~~~~~~~~fD~I~~~~~------l~~~------~~~~-------~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
..+..+. ...++||+|++-.+ +..+ .... ...+.+.++.+.|||||++++++
T Consensus 307 ~~Da~~~--~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 307 EGDARSF--SPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred eCccccc--ccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3222221 13457999996211 1100 0111 12368899999999999998884
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.13 E-value=4.5e-10 Score=86.27 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=69.0
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.+.+.....++.+|||+|||+|.++..++.. +.+|+++|+++.++ +.++++.... .++..+..+..+ .+....
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~-~~~~~~~~~~---~~v~ii~~D~~~-~~~~~~ 76 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLA-PRLREKFAAA---DNLTVIHGDALK-FDLPKL 76 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHH-HHHHHHhccC---CCEEEEECchhc-CCcccc
Confidence 34444455567789999999999999999887 78999999999987 7777765431 223333332221 223334
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||.|+++.++ +. ..+.+.+.++.. .+.++|.+++.
T Consensus 77 ~~d~vi~n~Py-~~-~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 77 QPYKVVGNLPY-NI-STPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred CCCEEEECCCc-cc-HHHHHHHHHhcC--CCcceEEEEEE
Confidence 69999997664 43 223333333321 23466766555
No 146
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.12 E-value=1.5e-09 Score=89.21 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=76.3
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
.+.+|.+|||+|||+|..+..++... ..+|+++|+++.++ +.+++|+..+++. .+..+..+.. ..+...+.||.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~-~v~~~~~D~~-~~~~~~~~fD~V 144 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVL-NVAVTNFDGR-VFGAAVPKFDAI 144 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCC-cEEEecCCHH-HhhhhccCCCEE
Confidence 34578899999999999999988765 35899999999987 8888898888763 2333322221 122223469999
Q ss_pred EEcccccCC------------cChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYV------------KQYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~------------~~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+.... .... ...+.++.+.+.|||||+++.+
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 975432110 0011 1236888999999999998877
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.12 E-value=1.8e-09 Score=85.94 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC-------CcceE
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP-------ALPHI 133 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-------~~~~~ 133 (244)
....|.+++.. ....++.+||..|||.|.-...+|.+ +.+|+|+|+|+.++....+++........ ....+
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 35667777665 34456779999999999999999987 77999999999988444344432111110 11123
Q ss_pred eeecCCCCCCC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeee
Q 026036 134 KHSWGDAFPIP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 134 ~~~~~~~~~~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.+-.+|.+... .++||+|+=..++ .........+..+.+.++|+|||++++.+...+..... ..|
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l-~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~---GPP-------- 167 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFL-CALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME---GPP-------- 167 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSST-TTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS---SSS--------
T ss_pred EEEEcccccCChhhcCCceEEEEeccc-ccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC---CcC--------
Confidence 44445554432 2479999987776 55555667799999999999999955553332221111 112
Q ss_pred ccCccchhhHHHHHhhcCCeEEEec
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.. +.+++.+++. .+|+++.+.
T Consensus 168 -f~v-~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 168 -FSV-TEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp ------HHHHHHHHT-TTEEEEEEE
T ss_pred -CCC-CHHHHHHHhc-CCcEEEEEe
Confidence 111 2356666666 778887765
No 148
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=89.95 Aligned_cols=100 Identities=10% Similarity=0.051 Sum_probs=67.9
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--CCCCccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--PNPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~I~~~~~l 157 (244)
.++|+|||+|..++.++.. ..+|+|+|+|+.|| +.+++.-..... .....+...+..++ .+++.|+|++.-++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL-~~a~k~~~~~y~---~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAML-KVAKKHPPVTYC---HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHH-HHhhcCCCcccc---cCCccccccccccccCCCcceeeehhhhhH
Confidence 8999999999778888765 78899999999998 655542211100 00111222222233 36799999999999
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCC-ceEeecc
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKD-SQVGHLT 188 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG-~~~~~~~ 188 (244)
|+.+.+ +..+.+.|+||+.| .+++=.+
T Consensus 111 -HWFdle---~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 111 -HWFDLE---RFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred -HhhchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence 666555 88899999999876 4444333
No 149
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=2e-10 Score=83.18 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=77.7
Q ss_pred ccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 026036 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116 (244)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~ 116 (244)
-|....+.+.|+...+. -+..+...+.......+|++++|||||+|.+++.++......|+|+|++++++ +.
T Consensus 15 gFeKpk~~LEQY~T~p~-------iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EI 86 (185)
T KOG3420|consen 15 GFEKPKLLLEQYPTRPH-------IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EI 86 (185)
T ss_pred cccccchhhhhCCCcHH-------HHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HH
Confidence 34456777777754333 23444455555556679999999999999999777655577799999999997 89
Q ss_pred HHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 117 IAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.++|+....+ ++..++.+..+. ....+.||.++.+.++
T Consensus 87 f~rNaeEfEv--qidlLqcdildl-e~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 87 FTRNAEEFEV--QIDLLQCDILDL-ELKGGIFDTAVINPPF 124 (185)
T ss_pred HhhchHHhhh--hhheeeeeccch-hccCCeEeeEEecCCC
Confidence 9999887666 234444444333 2234789999999887
No 150
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.10 E-value=1.9e-09 Score=88.55 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=80.2
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
..+...+.++.|||+|||+|+++.++++.+..+|++++.|+ |. +.+++-+..|.+..++..+.....+ .. .+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MA-qyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MA-QYARKLVASNNLADRITVIPGKIED-IE-LPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HH-HHHHHHHhcCCccceEEEccCcccc-cc-Cchhcc
Confidence 33445678999999999999999999999999999999987 44 8888888888887666655444332 22 246799
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+|++-.+=|.- -.+...++.-...+.|||+|..+
T Consensus 246 viISEPMG~mL-~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYML-VNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhh-hhHHHHHHHHHHHhhcCCCCccc
Confidence 99997664332 23334444445669999999644
No 151
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=3e-09 Score=80.11 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
..-++|||||+|..+-++++.. ...+.++|+++.++ +...+.+..|+. .+..+..+..+.+. .++.|+++-|.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~--~~~~V~tdl~~~l~--~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRV--HIDVVRTDLLSGLR--NESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCC--ccceeehhHHhhhc--cCCccEEEECC
Confidence 4689999999999998888776 46699999999987 777777777766 23444444433333 27899999887
Q ss_pred cccCCcChH-------------------HHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccc
Q 026036 156 ILLYVKQYS-------------------NLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKED 216 (244)
Q Consensus 156 ~l~~~~~~~-------------------~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (244)
+. -..+.. -..+.+..+-.+|.|.|.+++.. .+.. .
T Consensus 119 PY-Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~--------------------~~~N----~ 173 (209)
T KOG3191|consen 119 PY-VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA--------------------LRAN----K 173 (209)
T ss_pred Cc-CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee--------------------hhhc----C
Confidence 74 322111 13355555667778888777651 1111 1
Q ss_pred hhhHHHHHhhcCCeEEEeccEE
Q 026036 217 ETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 217 ~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
.+++.+.++..||.+....+|.
T Consensus 174 p~ei~k~l~~~g~~~~~~~~Rk 195 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQRK 195 (209)
T ss_pred HHHHHHHHhhcccceeEEEEEe
Confidence 3688889999999887766554
No 152
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.09 E-value=1.1e-09 Score=93.87 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..|.+++...... .+.+|||++||+|.+++.+++. ..+|+++|+++.++ +.+++|+..|+++ ++..+..+..+.
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai-~~a~~N~~~~~~~-~v~~~~~d~~~~ 266 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSV-AAAQYNIAANGID-NVQIIRMSAEEF 266 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHH-HHHHHHHHHhCCC-cEEEEECCHHHH
Confidence 466677776654432 2357999999999999988876 56899999999998 8899999988873 334443333221
Q ss_pred CCC---------------CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPI---------------PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~---------------~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++. ...+||+|+.-++ +. ...+ ++++.+.+ |++.++++
T Consensus 267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R~-G~~~---~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-RA-GLDD---ETLKLVQA---YERILYIS 319 (362)
T ss_pred HHHHhhcccccccccccccCCCCCEEEECCC-CC-CCcH---HHHHHHHc---cCCEEEEE
Confidence 110 0125899998555 33 2223 55555544 55544444
No 153
>PLN02476 O-methyltransferase
Probab=99.07 E-value=9.2e-10 Score=90.16 Aligned_cols=105 Identities=12% Similarity=0.172 Sum_probs=77.9
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----CCCC
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPD 147 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 147 (244)
..+.++|||||+|+|..++.++... ..+|+.+|.+++.. +.+++|....++..++..+..+..+.++. ..++
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~-~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSL-EVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 3456899999999999999998754 55799999999986 89999999988865554443322222211 1357
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|+. |. ...+....++.+.++|+|||.+++-
T Consensus 195 FD~VFI-Da-----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 195 YDFAFV-DA-----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCEEEE-CC-----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999987 32 2355668889999999999987765
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.06 E-value=9.6e-11 Score=90.78 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=79.6
Q ss_pred ceeechHHHHHHHHhhccC-c-ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHRE-W-IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~-~-~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+.|.+..+-+-+..... . .+|.+||||.||||.+|+.++.++..+|+++|.++.++ ..+++|+...+...++..+
T Consensus 19 ~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-~~i~~N~~~l~~~~~~~v~ 97 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-KIIKKNLEKLGLEDKIRVI 97 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-HHHHHHHHHHT-GGGEEEE
T ss_pred CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-HHHHHHHHHhCCCcceeee
Confidence 4455666555555444322 2 68999999999999999999988889999999999987 8999999887765433444
Q ss_pred eeecCCCCC---CCCCCccEEEEcccccCCcChHHHHHHHHHHH--HhcCCCCceEee
Q 026036 134 KHSWGDAFP---IPNPDWDLILASDILLYVKQYSNLIKSLSVLL--KSYKPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~---~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~--~~lk~gG~~~~~ 186 (244)
..+....+. ....+||+|++-++ |..... ..+++..+. ..|+++|.+++-
T Consensus 98 ~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~--~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 98 KGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLY--YEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp ESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHH--HHHHHHHHHHTTSEEEEEEEEEE
T ss_pred ccCHHHHHHhhcccCCCceEEEECCC-cccchH--HHHHHHHHHHCCCCCCCEEEEEE
Confidence 333221121 13568999998555 454432 235666665 788888866654
No 155
>PRK03612 spermidine synthase; Provisional
Probab=99.06 E-value=1e-09 Score=98.41 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=69.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCC---CCcceEeeecCCCC---CCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGIT---PALPHIKHSWGDAF---PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~fD 149 (244)
++++|||||||+|..+..+++... .+|+++|++++++ +.++++...+.+. ..-+.+++..+|.. ....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi-~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMT-ELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHH-HHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467999999999999988887644 7999999999987 7777743221110 00112333333322 22346899
Q ss_pred EEEEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++...-........ -.+.++.+.+.|||||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 9999533211010011 125778899999999987775
No 156
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.06 E-value=2.5e-09 Score=86.82 Aligned_cols=110 Identities=19% Similarity=0.216 Sum_probs=77.4
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
..+.......+..+|+|||+|+|.++..+++.. +.+++..|... .+ +.+++ ..++..+..+..+++ +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v~-~~~~~-------~~rv~~~~gd~f~~~---P 157 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPE-VI-EQAKE-------ADRVEFVPGDFFDPL---P 157 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HH-HH-CCHHH-------TTTEEEEES-TTTCC---S
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHh-hh-hcccc-------ccccccccccHHhhh---c
Confidence 334444455566799999999999999998887 78999999944 44 54444 234444444443322 2
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC--CceEeecccc
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK--DSQVGHLTKN 190 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g--G~~~~~~~~~ 190 (244)
. +|+|+..+++ |..+.++..+.|+++++.|+|| |+++|.....
T Consensus 158 ~-~D~~~l~~vL-h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 158 V-ADVYLLRHVL-HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp S-ESEEEEESSG-GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred c-ccceeeehhh-hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 3 9999999999 4455678889999999999999 9999984443
No 157
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.06 E-value=2.9e-09 Score=91.10 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCCccE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPDWDL 150 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fD~ 150 (244)
+|++||++-|=||.+++++|..++.+|+.||+|..++ +.+++|...|++... .+.+..+|.+.+ ...+||+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al-~~a~~N~~LNg~~~~--~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRAL-EWARENAELNGLDGD--RHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHH-HHHHHHHHhcCCCcc--ceeeehhhHHHHHHHHHhcCCcccE
Confidence 5899999999999999999987677999999999987 999999999998432 223333443321 2348999
Q ss_pred EEEcccccCCc------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVK------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+.-++-|--. ...+..+++..+.++|+|||.++++
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~ 335 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99977765321 1334567888899999999987765
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.06 E-value=1.2e-09 Score=86.12 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=80.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCCC-CCCCCccEE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFP-IPNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~fD~I 151 (244)
...++|||||++.|..++.+|... ..+++.+|.++++. +.+++|....++..++..+. .++.+.+. ...++||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-EIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-HHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 366899999999999999998776 46899999999987 89999999999977655554 24433333 356799999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |. ...+-.+.++.+.++|+|||.+++-
T Consensus 137 FI-Da-----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FI-DA-----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EE-eC-----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 87 32 2334448889999999999977665
No 159
>PRK00811 spermidine synthase; Provisional
Probab=99.05 E-value=1.2e-09 Score=90.55 Aligned_cols=108 Identities=14% Similarity=0.118 Sum_probs=69.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCC-CCCcceEeeecCCCC---CCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~I 151 (244)
++++||+||||+|..+..+++.. ..+|+++|+++.++ +.++++...... ...-..+.+..+|.. ....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv-~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVV-EVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHH-HHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999887763 56899999999987 777776542211 000112333344432 2235689999
Q ss_pred EEcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++..+- ....... -...++.+.+.|+|||.+++.
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 984221 1111111 146778899999999988775
No 160
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.04 E-value=3e-09 Score=81.47 Aligned_cols=128 Identities=17% Similarity=0.078 Sum_probs=86.8
Q ss_pred ceeechHHHHHHHHhhccC--cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHRE--WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+.|.+-.+-+-+..-.. ...|.++||+-+|||.+++.++.++..+++++|.+..++ ..+++|+...+...++..+
T Consensus 20 ~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 20 PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-KILKENLKALGLEGEARVL 98 (187)
T ss_pred CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-HHHHHHHHHhCCccceEEE
Confidence 3455666655555544433 368999999999999999999999899999999999986 8889998877765555544
Q ss_pred eeecCCCCCCCCC--CccEEEEcccccCCcChHHHHHHHHH--HHHhcCCCCceEee
Q 026036 134 KHSWGDAFPIPNP--DWDLILASDILLYVKQYSNLIKSLSV--LLKSYKPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~~~~~--~fD~I~~~~~l~~~~~~~~l~~~l~~--~~~~lk~gG~~~~~ 186 (244)
..+....++.... +||+|+. |+-|.... -+....+.. -...|+|+|.+++-
T Consensus 99 ~~da~~~L~~~~~~~~FDlVfl-DPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 99 RNDALRALKQLGTREPFDLVFL-DPPYAKGL-LDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred eecHHHHHHhcCCCCcccEEEe-CCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 4433322222333 4999998 55445332 222333333 34679999876654
No 161
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.04 E-value=1.4e-09 Score=91.65 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=77.2
Q ss_pred echHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC-CCC---Ccc-eE
Q 026036 59 WPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG-ITP---ALP-HI 133 (244)
Q Consensus 59 w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~-~~~---~~~-~~ 133 (244)
|--+..+..++.......++.+|||||||-|.-..-.....-.+++|+|++...+.++.++-..... ... +.. ..
T Consensus 44 wvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 44 WVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 4455566666543333337889999999999876666666678899999999988444333211111 100 001 11
Q ss_pred eeecCCCC--------CCCCCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 134 KHSWGDAF--------PIPNPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 134 ~~~~~~~~--------~~~~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
.+..+|.. .....+||+|-|-.++++. ++.+....+|+.+...|+|||.|+.+++.
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22233322 1123489999999888554 34445567999999999999999988433
No 162
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=6.8e-09 Score=82.71 Aligned_cols=125 Identities=9% Similarity=0.086 Sum_probs=84.0
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc------CC-CCCcceEe
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN------GI-TPALPHIK 134 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~------~~-~~~~~~~~ 134 (244)
...|.++..... ..++.+||..|||.|.-...+|.+ +.+|+|+|+|+.++....++|-... .. ..+...+.
T Consensus 29 np~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 29 NEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 455666654432 236789999999999999999987 7789999999998744333221100 00 00111234
Q ss_pred eecCCCCCCC-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 135 HSWGDAFPIP-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 135 ~~~~~~~~~~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
+..+|.+... .++||+|+-..++ .....+...+..+.+.++|+|||++++.+..
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~-~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAY-IALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhH-hcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 4444444332 2579999987777 5556666779999999999999999888543
No 163
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=2.9e-09 Score=83.74 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=75.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCC-CCCc---------------------
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGI-TPAL--------------------- 130 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~-~~~~--------------------- 130 (244)
..+.+..+|||||-+|.+++.+|+.++ ..|.|+||++.-+ ..+++++....- ...+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI-~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLI-QRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHH-HHHHHhccccccccccccCCCccccccccccccccccc
Confidence 456788999999999999999999884 5599999999765 777766542110 0000
Q ss_pred ----------------ceEeeecCCCCCCCCCCccEEEEcccc-cCCc--ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 ----------------PHIKHSWGDAFPIPNPDWDLILASDIL-LYVK--QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ----------------~~~~~~~~~~~~~~~~~fD~I~~~~~l-~~~~--~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....+...|.+......||+|+|..+- |-|. ..+-+.++++.+.++|.|||++++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 011111222222345689999996654 2222 2345779999999999999987775
No 164
>PRK04148 hypothetical protein; Provisional
Probab=98.98 E-value=1.1e-08 Score=74.41 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=72.5
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcH-HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~-~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+++|+.++....++.+|||+|||+|. ++..+++. +.+|+++|+++.++ +.++.+ .. ..+..|+.++..
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV-~~a~~~----~~----~~v~dDlf~p~~ 72 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAV-EKAKKL----GL----NAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHh----CC----eEEECcCCCCCH
Confidence 467787776655567899999999996 88888765 78999999999876 555443 22 344445544433
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..-+.+|+|.+..+ .++++..+.++++.. |.-+++.
T Consensus 73 ~~y~~a~liysirp------p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 73 EIYKNAKLIYSIRP------PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHhcCCEEEEeCC------CHHHHHHHHHHHHHc--CCCEEEE
Confidence 33456899988644 466778877787754 3444544
No 165
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.97 E-value=9e-09 Score=84.20 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=76.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH-hcCC----CCCcceEeeecC-----CCCCCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST-TNGI----TPALPHIKHSWG-----DAFPIPN 145 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~-~~~~----~~~~~~~~~~~~-----~~~~~~~ 145 (244)
.++..+++||||-|.-.+-.-+.+-.+++++||.+..+ +-++++.. ..+. ......+..+.. +.+++.+
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI-~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI-NQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccH-HHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 37789999999999888877776677899999998766 33432221 1111 011223322221 2234445
Q ss_pred CCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 146 PDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
++||+|=|-.++++. +.......+++++++.|+|||.|+-+++..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 669999998887443 455677789999999999999888774443
No 166
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=7.6e-09 Score=90.14 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..|..++.+.....++.+|||+-||.|.+++.+|+. ..+|+|+|++++++ +.+++|++.|++.+ +.++..+..+.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV-~~A~~NA~~n~i~N-~~f~~~~ae~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAV-EAAQENAAANGIDN-VEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHH-HHHHHHHHHcCCCc-EEEEeCCHHHH
Confidence 56788888887777778889999999999999999965 88999999999998 89999999999954 44443333222
Q ss_pred CCC--CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchh
Q 026036 141 FPI--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDET 218 (244)
Q Consensus 141 ~~~--~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (244)
.+. ....+|+|+.-.+ -....+ .+++.+.+ ++|...++++ +.+.-. .
T Consensus 354 ~~~~~~~~~~d~VvvDPP--R~G~~~---~~lk~l~~-~~p~~IvYVS---------------------CNP~Tl----a 402 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPP--RAGADR---EVLKQLAK-LKPKRIVYVS---------------------CNPATL----A 402 (432)
T ss_pred hhhccccCCCCEEEECCC--CCCCCH---HHHHHHHh-cCCCcEEEEe---------------------CCHHHH----H
Confidence 222 2347899998433 222222 45555554 4565555554 433332 3
Q ss_pred hHHHHHhhcCCeEEEec
Q 026036 219 IFFTSCENAGLEVKHLG 235 (244)
Q Consensus 219 ~~~~~l~~~Gf~v~~~~ 235 (244)
.-...|.+.|.+++++.
T Consensus 403 RDl~~L~~~gy~i~~v~ 419 (432)
T COG2265 403 RDLAILASTGYEIERVQ 419 (432)
T ss_pred HHHHHHHhCCeEEEEEE
Confidence 44566777788777664
No 167
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.8e-08 Score=84.10 Aligned_cols=121 Identities=17% Similarity=0.129 Sum_probs=89.7
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+|+.+.+.....+|..|||=-||||.+.+.+.. .+++++|+|++..|+ +-++.|....++.. .......-...+
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G~~viG~Did~~mv-~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MGARVIGSDIDERMV-RGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cCceEeecchHHHHH-hhhhhhhhhhCcCc-eeEEEecccccC
Confidence 447888888888888999999999999999988865 499999999999998 78999988877532 111222112345
Q ss_pred CCCCCCccEEEEcccccCCcC------h-HHHHHHHHHHHHhcCCCCceEee
Q 026036 142 PIPNPDWDLILASDILLYVKQ------Y-SNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 ~~~~~~fD~I~~~~~l~~~~~------~-~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++...++|.|++ |+-|--.. . .-..++++.++++||+||++++.
T Consensus 259 pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 259 PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 565567999988 55443221 1 22448889999999999987775
No 168
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.96 E-value=1.2e-09 Score=89.91 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=74.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC-CCcceEeeecCCCCC--CCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT-PALPHIKHSWGDAFP--IPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~fD~I~~ 153 (244)
+|++||++-|=||.++++++..+..+|+.+|.|..++ +.+++|...|+++ .++..+..+.-+.+. ...++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al-~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRAL-EWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHH-HHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 6889999999999999999877677899999999987 9999999999985 334444333222111 11358999999
Q ss_pred cccccCCcC---hHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQ---YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~---~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-++-|.... ..+..+.+..+.++++|||.++.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~ 237 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC 237 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 777653322 224456788888999999976554
No 169
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.96 E-value=9.1e-09 Score=87.97 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=72.8
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
....|.+++.+.... .+.+|||+|||+|.+++.+++. ..+|+++|++++++ +.+++|+..|++. ++..+..+..+.
T Consensus 182 ~~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av-~~a~~n~~~~~~~-~v~~~~~d~~~~ 257 (353)
T TIGR02143 182 VNIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSV-NAAQYNIAANNID-NVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHHHHcCCC-cEEEEEcCHHHH
Confidence 355666666554432 2347999999999999999876 46899999999997 8899999998874 244443333221
Q ss_pred CCC----------C-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPI----------P-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~----------~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++. . ...||+|+.-++ . ....+ ++++.+.+ |++.++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~---~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDP---DTCKLVQA---YERILYIS 310 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCC-C-CCCcH---HHHHHHHc---CCcEEEEE
Confidence 110 0 124899988544 2 22223 44454443 66655554
No 170
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.96 E-value=9.7e-10 Score=86.60 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=79.8
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.......+.++||||||++|..++.+|+.. +.+|+.+|.+++.. +.++++....++..++..+..+..+.++
T Consensus 33 ~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~ 111 (205)
T PF01596_consen 33 TGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLP 111 (205)
T ss_dssp HHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHH
Confidence 33343333334466799999999999999999765 57999999999876 8888898888875554444332222111
Q ss_pred -----CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 -----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 -----~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...++||+|+. |.- ..+-...+..+.++|+|||.+++-
T Consensus 112 ~l~~~~~~~~fD~VFi-Da~-----K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 112 ELANDGEEGQFDFVFI-DAD-----KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHTTTTTSEEEEEE-EST-----GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhccCCCceeEEEE-ccc-----ccchhhHHHHHhhhccCCeEEEEc
Confidence 11357999997 331 334557888889999999987765
No 171
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.96 E-value=5.4e-09 Score=86.27 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=69.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~I~ 152 (244)
.+++||+||||+|..+..+++.. ..+|+++|++++++ +.++++............+.+..+|.. ....++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi-~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVI-ELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHH-HHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999988887665 56899999999886 777765432211001112222223322 12246899999
Q ss_pred EcccccCCcChHH--HHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.... ....... ....++.+.+.|+|||.+++.
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 85442 1111111 247788999999999998876
No 172
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.94 E-value=6.6e-09 Score=81.27 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=87.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc-eEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
...+.||.|||.|.++..+......+|..+|..+..+ +.++....... .++. .......+- .....+||+|.+--
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl-~~a~~~l~~~~--~~v~~~~~~gLQ~f-~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFL-EQAKEYLGKDN--PRVGEFYCVGLQDF-TPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHH-HHHHHHTCCGG--CCEEEEEES-GGG-----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHH-HHHHHHhcccC--CCcceEEecCHhhc-cCCCCcEeEEEehH
Confidence 4569999999999999877555578899999999876 66654433211 1111 111111111 11235899999999
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
|+ -|....++++.|+++...|+|+|.+++-......... .+......-..+...|.++++++|++++...
T Consensus 131 ~l-ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~---------~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 131 CL-GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD---------EFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp -G-GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---------EEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred hh-ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---------ccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 99 7788899999999999999999977776332221110 1101111111235789999999999988754
No 173
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.94 E-value=1.3e-09 Score=82.95 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=76.3
Q ss_pred EEEeCChHHHHHHHHHhHHhcC--CCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 104 TTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 104 ~~~D~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
+|+|+|++|+ +.++++..... ...++..+..+. ..+++.+++||+|+++.++.+. ++..+.+++++++|||||
T Consensus 1 ~GvD~S~~ML-~~A~~~~~~~~~~~~~~i~~~~~d~-~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQL-AVAATRQSLKARSCYKCIEWIEGDA-IDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHH-HHHHHhhhcccccCCCceEEEEech-hhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCe
Confidence 4899999998 66655443211 112334443333 3456777799999999988433 456699999999999999
Q ss_pred ceEeecccccCCCCC------CC---CCCCe-EEE---eee------eccCccchhhHHHHHhhcCCeEEEeccEE
Q 026036 182 SQVGHLTKNEQGEGT------EG---LPWPA-FLM---SWR------RRIGKEDETIFFTSCENAGLEVKHLGSRV 238 (244)
Q Consensus 182 ~~~~~~~~~~~~~~~------~~---~~~~~-~~~---~~~------~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 238 (244)
++++......+.... .. ..... +.. .++ ..+ .+.+++.++++++||+..+.....
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f--~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGY--LTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHC--cCHHHHHHHHHHcCCCcceEEECc
Confidence 998874433221100 00 00000 000 000 122 236888999999999876654433
No 174
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.89 E-value=4.8e-09 Score=82.11 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=68.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..+|..|+|+.||.|.+++.+|+.. +++|+++|+++.++ +.+++|+..|++..++..+..|..+..+ ...||-|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~-~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAV-EYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHH-HHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHH-HHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 4578999999999999999999844 77899999999987 8999999999998776666665544433 578999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
+.+- . .. ..+..+.+++++||.
T Consensus 176 ~lp~-~---~~---~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 176 NLPE-S---SL---EFLDAALSLLKEGGI 197 (200)
T ss_dssp --TS-S---GG---GGHHHHHHHEEEEEE
T ss_pred CChH-H---HH---HHHHHHHHHhcCCcE
Confidence 7653 1 12 456667888888874
No 175
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=87.57 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+.+|||++||+|..++.++...+ .+|+++|+++.++ +.+++|+..|++.. +.....+....+.. .++||+|++ |+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~l-DP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDI-DP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEE-CC
Confidence 46899999999999999987654 5899999999987 89999999998742 22222222111111 357999998 55
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .... ..+....+.+++||.++++
T Consensus 134 ~---Gs~~---~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 134 F---GSPA---PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C---CCcH---HHHHHHHHHhcCCCEEEEE
Confidence 3 2222 5666666778999999888
No 176
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.88 E-value=1.5e-08 Score=83.12 Aligned_cols=88 Identities=15% Similarity=0.206 Sum_probs=62.3
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+++.+.+.....++.+|||+|||+|.++..+++. +.+|+++|+++.++ +.++++... . .+ +.+..+|...
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~-~~l~~~~~~--~-~~---v~ii~~D~~~ 86 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLA-EFLRDDEIA--A-GN---VEIIEGDALK 86 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHH-HHHHHHhcc--C-CC---EEEEEecccc
Confidence 344555555555667889999999999999999987 67999999999987 677666542 1 12 3333444443
Q ss_pred CCCCCccEEEEccccc
Q 026036 143 IPNPDWDLILASDILL 158 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~ 158 (244)
.....||.|++|.+++
T Consensus 87 ~~~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLPEFNKVVSNLPYQ 102 (258)
T ss_pred CCchhceEEEEcCCcc
Confidence 3334689999988853
No 177
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.87 E-value=8.7e-08 Score=71.38 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=92.2
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
+.+-|++-.+|+.+........|..|||+|.|||.++.++...+ ...+++++.|++-+ ..+.+.- .+. ..+
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~-~~L~~~~--p~~----~ii 99 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV-CHLNQLY--PGV----NII 99 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH-HHHHHhC--CCc----ccc
Confidence 45678899999999998888899999999999999999988877 56799999999865 3333221 111 112
Q ss_pred eeecCC----CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 134 KHSWGD----AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 134 ~~~~~~----~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
..+..+ .-...++.||.|+|.-++ -......-.+.++.+...+.+||.++-..+..
T Consensus 100 ~gda~~l~~~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 100 NGDAFDLRTTLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccchhhHHHHHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 222111 112345689999998877 33444566688999999999999888776663
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.85 E-value=2e-08 Score=83.53 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=64.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++.+|||||||+|.++..++.. +.+|+++|+++.++ +.++++....+...+ +.+..+|.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li-~~l~~~~~~~~~~~~---v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMV-AELKKRFQNSPLASK---LEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHH-HHHHHHHHhcCCCCc---EEEEECCHhhh
Confidence 34555555556668889999999999999999876 67899999999987 788877765443222 33444454444
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
....||.|++|-+.
T Consensus 98 ~~~~~d~VvaNlPY 111 (294)
T PTZ00338 98 EFPYFDVCVANVPY 111 (294)
T ss_pred cccccCEEEecCCc
Confidence 44578999987775
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.85 E-value=8.8e-08 Score=74.15 Aligned_cols=116 Identities=19% Similarity=0.225 Sum_probs=74.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCe---------EEEEeCChHHHHHHHHHhHHhcCCCCCcc
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLD---------ITTSDYNDQEIEDNIAYNSTTNGITPALP 131 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~---------v~~~D~~~~~l~~~~~~~~~~~~~~~~~~ 131 (244)
...+|..+.......++..|||-.||+|.+.+..+... ... ++|.|++++++ +.++.|+...+....+.
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v-~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAV-RGARENLKAAGVEDYID 91 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHH-HHHHHHHHHTT-CGGEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHH-HHHHHHHHhcccCCceE
Confidence 45677777776777788999999999999998877654 333 88999999997 88999998887754444
Q ss_pred eEeeecCCCCCCCCCCccEEEEcccccCCcCh-HHH----HHHHHHHHHhcCC
Q 026036 132 HIKHSWGDAFPIPNPDWDLILASDILLYVKQY-SNL----IKSLSVLLKSYKP 179 (244)
Q Consensus 132 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~-~~l----~~~l~~~~~~lk~ 179 (244)
....+.. .++...+++|+|+++.++-.-... ..+ .++++++.+++++
T Consensus 92 ~~~~D~~-~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 92 FIQWDAR-ELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp EEE--GG-GGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred EEecchh-hcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 4333332 233445689999998886322121 112 2456777888887
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.84 E-value=1.7e-08 Score=81.76 Aligned_cols=104 Identities=16% Similarity=0.105 Sum_probs=76.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC------CCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI------PNPD 147 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 147 (244)
.+.++|||||+++|..++.+|... ..+|+.+|.+++.. +.++.+....++..++..+..+..+.++. ..++
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~-~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENY-ELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 355799999999999999998764 56899999999875 88888988888766555443333222221 1358
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||+|+. |. ....-...+..+.++|+|||.+++-
T Consensus 157 fD~iFi-Da-----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFV-DA-----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEe-cC-----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999987 32 2344558888889999999976664
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.83 E-value=1.7e-08 Score=83.38 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=58.0
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP 144 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (244)
+++.+.+.....++.+|||+|||+|.++..++..+ .+|+++|+++.++ +.++++... .++..+..+..+ .+..
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~-~~~~~~~~~----~~v~~i~~D~~~-~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLA-PILAETFAE----DNLTIIEGDALK-VDLS 102 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHH-HHHHHhhcc----CceEEEEChhhc-CCHH
Confidence 44555555566688899999999999999999884 5999999999987 667665432 223333333322 1221
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
+-.+|.|++|.+.
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 1115899998774
No 182
>PLN02366 spermidine synthase
Probab=98.81 E-value=4.7e-08 Score=81.78 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=70.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CC-CCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PI-PNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~fD~I 151 (244)
..++||+||||.|.....+++.. ..+|+.+|+++.++ +.+++.....+....-..+++..+|.. .. ..++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi-~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVI-DVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 46799999999999999888764 36899999999876 777775432111111123444444532 21 24579999
Q ss_pred EEcccccCCcChH-H--HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYS-N--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~-~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ |.. .+.... . -...++.+.+.|+|||.++..
T Consensus 170 i~-D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IV-DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EE-cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98 433 221111 1 136788999999999988764
No 183
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.80 E-value=3e-08 Score=84.77 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=59.8
Q ss_pred eEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 42 ELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 42 ~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
.+.+...++++.+.. ....|.+++.+.....++ +|||+-||+|.+++.+|.. ..+|+|+|++++++ +.+++|+
T Consensus 166 ~~~~~~~sFfQvN~~----~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av-~~A~~Na 238 (352)
T PF05958_consen 166 SFRISPGSFFQVNPE----QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAV-EDARENA 238 (352)
T ss_dssp EEEEETTS---SBHH----HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHH-HHHHHHH
T ss_pred EEEECCCcCccCcHH----HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHH-HHHHHHH
Confidence 344444556555433 677888888777665555 8999999999999999876 67899999999998 8999999
Q ss_pred HhcCCCCCcceEe
Q 026036 122 TTNGITPALPHIK 134 (244)
Q Consensus 122 ~~~~~~~~~~~~~ 134 (244)
..|++. ++..+.
T Consensus 239 ~~N~i~-n~~f~~ 250 (352)
T PF05958_consen 239 KLNGID-NVEFIR 250 (352)
T ss_dssp HHTT---SEEEEE
T ss_pred HHcCCC-cceEEE
Confidence 999984 344443
No 184
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=9.1e-08 Score=80.37 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=76.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.+|||.-||.|.+++.+|..+..+|+++|+|+.++ +.+++|+.+|++...+..+..|..+..+. .+.+|-|+++.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~-~~L~eNi~LN~v~~~v~~i~gD~rev~~~-~~~aDrIim~~ 264 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAV-EYLKENIRLNKVEGRVEPILGDAREVAPE-LGVADRIIMGL 264 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHH-HHHHHHHHhcCccceeeEEeccHHHhhhc-cccCCEEEeCC
Confidence 36899999999999999999998766799999999998 99999999999977666665554433222 26799999976
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
+-.. . +.+....+.+++||.+
T Consensus 265 p~~a----~---~fl~~A~~~~k~~g~i 285 (341)
T COG2520 265 PKSA----H---EFLPLALELLKDGGII 285 (341)
T ss_pred CCcc----h---hhHHHHHHHhhcCcEE
Confidence 6411 1 4555567778888843
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.80 E-value=3.8e-08 Score=86.32 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=66.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
++..|+|+|||+|.++..+++.+ ..+|++++.++.++ ..+++.+..|+..+++..+..+..+- . ...+.|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~-~~l~~~v~~n~w~~~V~vi~~d~r~v-~-lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV-VTLQKRVNANGWGDKVTVIHGDMREV-E-LPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH-HHHHHHHHHTTTTTTEEEEES-TTTS-C-HSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH-HHHHHHHHhcCCCCeEEEEeCcccCC-C-CCCceeEE
Confidence 46789999999999998776654 46899999999875 55556667788877776665444332 1 13489999
Q ss_pred EEccc--ccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 152 LASDI--LLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 152 ~~~~~--l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
|+--. +-..+..+ ..+....+.|||+|..
T Consensus 263 VSElLGsfg~nEl~p---E~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 263 VSELLGSFGDNELSP---ECLDAADRFLKPDGIM 293 (448)
T ss_dssp EE---BTTBTTTSHH---HHHHHGGGGEEEEEEE
T ss_pred EEeccCCccccccCH---HHHHHHHhhcCCCCEE
Confidence 98322 21222333 6677888999999853
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=6.7e-08 Score=74.80 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=80.9
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
+++|+|+|.|.+|+.+|-.. ..+++.+|....-+ ..++.-+...+++ ++..+..+..+ .....+||+|++-.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~-~FL~~~~~~L~L~-nv~v~~~R~E~--~~~~~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKV-AFLKEVVRELGLS-NVEVINGRAEE--PEYRESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHH-HHHHHHHHHHT-S-SEEEEES-HHH--TTTTT-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHH-HHHHHHHHHhCCC-CEEEEEeeecc--cccCCCccEEEeehhc-
Confidence 89999999999999998776 67899999998765 5555555555553 23444433333 3345689999996553
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEecc
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
.+...+.-+.+.+++||++++. +-....+........++..|.+++.+.+
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~----------------------KG~~~~~El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAY----------------------KGPDAEEELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEE----------------------ESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEE----------------------cCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence 3447777888999999976653 2111111124455667777888777754
No 187
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.79 E-value=2.5e-08 Score=77.40 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=77.5
Q ss_pred eechH--HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 58 LWPGT--FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 58 ~w~~~--~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
-||.. ..+.+|+...+ ++..|-|+|||.+.++..+. ...+|...|+-.. |.. .+..
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~------------n~~-----Vtac 111 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP------------NPR-----VTAC 111 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------STT-----EEES
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhcc--cCceEEEeeccCC------------CCC-----EEEe
Confidence 45543 45667776433 45799999999999886552 2457999997542 111 2223
Q ss_pred ecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCcc
Q 026036 136 SWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKE 215 (244)
Q Consensus 136 ~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (244)
+. ..+|..+++.|++|+.-.+ .. .++...++++.|+|||||.+.|. .-+.|+.
T Consensus 112 di-a~vPL~~~svDv~VfcLSL-MG---Tn~~~fi~EA~RvLK~~G~L~IA--------------------EV~SRf~-- 164 (219)
T PF05148_consen 112 DI-ANVPLEDESVDVAVFCLSL-MG---TNWPDFIREANRVLKPGGILKIA--------------------EVKSRFE-- 164 (219)
T ss_dssp -T-TS-S--TT-EEEEEEES----S---S-HHHHHHHHHHHEEEEEEEEEE--------------------EEGGG-S--
T ss_pred cC-ccCcCCCCceeEEEEEhhh-hC---CCcHHHHHHHHheeccCcEEEEE--------------------EecccCc--
Confidence 33 3456778899999987776 32 45669999999999999987765 2444554
Q ss_pred chhhHHHHHhhcCCeEEEec
Q 026036 216 DETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 216 ~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+.+.|.+.++..||+++...
T Consensus 165 ~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 165 NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHCTTEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEecc
Confidence 37899999999999988753
No 188
>PRK01581 speE spermidine synthase; Validated
Probab=98.78 E-value=4.1e-08 Score=82.92 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=67.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH---hcCCCCCcceEeeecCCCC---CCCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAF---PIPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~fD 149 (244)
...+||+||||+|.....+++.. ..+|+++|++++++ +.++..-. .+.....-+.+.+..+|.. ....++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVI-elAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMI-NMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHH-HHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45699999999999887777654 47899999999987 77764211 1111101123333333332 23346899
Q ss_pred EEEEcccccCCcC--hHH--HHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQ--YSN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~--~~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|++. .. .... ... -...++.+.+.|+|||.+++.
T Consensus 229 VIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99984 32 2111 111 136788999999999987665
No 189
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.78 E-value=3.2e-08 Score=81.72 Aligned_cols=107 Identities=12% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCeEEEeCCCCc----HHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHH----hcCCC-----------------
Q 026036 78 RRRCIELGSGTG----ALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNST----TNGIT----------------- 127 (244)
Q Consensus 78 ~~~VLdlG~G~G----~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~----~~~~~----------------- 127 (244)
.-||+-.||.|| .+++.+.... ..+|+|+|+|+.++ +.++.-.- ..+++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL-~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL-EKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH-HHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 369999999999 3344444432 35799999999987 55543210 00010
Q ss_pred -----CCc-ceEeeecCCCCC--C-CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 128 -----PAL-PHIKHSWGDAFP--I-PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 128 -----~~~-~~~~~~~~~~~~--~-~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..+.+...|... + ..+.||+|+|.+++ .+.+.+...++++.+++.|+|||.+++.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvl-iyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVM-IYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHH-hcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 000 122333333332 1 24689999999998 4445566779999999999999988776
No 190
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.73 E-value=9.4e-08 Score=81.99 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=73.1
Q ss_pred CCeEEEeCCCCcHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
+.+|||+.||+|..++.++.. +..+|+++|+++.++ +.+++|+..|++. .+..+..+....+.....+||+|.. |
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdl-D 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-ESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDI-D 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-HHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEe-C
Confidence 358999999999999999887 357899999999987 8999999998773 2222222222222222357999987 6
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ .. .. ..+..+.+.+++||.++++
T Consensus 122 Pf-Gs--~~---~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PF-GT--PA---PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-CC--cH---HHHHHHHHhcccCCEEEEE
Confidence 64 32 12 5777788889999998888
No 191
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=6.6e-08 Score=75.66 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=97.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee-cCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-WGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~fD~I~~~~~ 156 (244)
...++|||||.|.+..++...+-.+++.+|.|..|+ +.++.. ..+++ ....+. -.+.+++.++++|+|+++-.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~-~s~~~~-qdp~i----~~~~~v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMI-KSCRDA-QDPSI----ETSYFVGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHH-HHhhcc-CCCce----EEEEEecchhcccccccchhhhhhhhh
Confidence 458999999999999999877777899999999997 555433 22333 222222 22456788889999999999
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCCCCeE---EEeeeeccCccchhhHHHHHhhcCCe
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLPWPAF---LMSWRRRIGKEDETIFFTSCENAGLE 230 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~Gf~ 230 (244)
+++..+ +...+..++..|||.|.|+-+..+.+... ......+-.- +.+|-..+.. ..+.-.++.++||.
T Consensus 147 lHW~Nd---LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~q--vrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 147 LHWTND---LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQ--VRDIGNLLTRAGFS 221 (325)
T ss_pred hhhhcc---CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhh--hhhhhhHHhhcCcc
Confidence 944444 44888999999999998776622221110 0000000000 0112112222 35666789999999
Q ss_pred EEEeccEEEEEe
Q 026036 231 VKHLGSRVYCIK 242 (244)
Q Consensus 231 v~~~~~~~~~~~ 242 (244)
...+..-.+.|+
T Consensus 222 m~tvDtDEi~v~ 233 (325)
T KOG2940|consen 222 MLTVDTDEIVVG 233 (325)
T ss_pred cceecccceeec
Confidence 888876666554
No 192
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.66 E-value=5.3e-08 Score=76.18 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=61.2
Q ss_pred cCCeEEEeCCCCc----HHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhH----HhcCCCC--------------
Q 026036 77 ERRRCIELGSGTG----ALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNS----TTNGITP-------------- 128 (244)
Q Consensus 77 ~~~~VLdlG~G~G----~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~----~~~~~~~-------------- 128 (244)
+..+|+-.||+|| .+++.+.... ..+|+|||+|+.++ +.+++-. ...+++.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L-~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSAL-EKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHH-HHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHH-HHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 4569999999999 3444444411 35899999999987 5554211 0011110
Q ss_pred -C-----cceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 129 -A-----LPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 129 -~-----~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. -..+.+...+.+. ...+.||+|+|.+|+ .....+...++++.+++.|+|||.+++.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVl-IYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVL-IYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSG-GGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEE-EEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0 0122333333333 234589999999998 3344556679999999999999988887
No 193
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=2.1e-07 Score=80.88 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=94.4
Q ss_pred ccCCceEEEEecccCCCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH
Q 026036 37 QFPEMELVIREFAFHQLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN 116 (244)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~ 116 (244)
.+.+..+.+....+++.+.. +++.|..++.++.....++.+||+.||||.+++++|+. ..+|+|++++++++ +.
T Consensus 347 ~l~~ltF~iSp~AFFQ~Nt~----~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV-~d 420 (534)
T KOG2187|consen 347 SLLGLTFRISPGAFFQTNTS----AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAV-ED 420 (534)
T ss_pred ecCCeEEEECCchhhccCcH----HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhc-ch
Confidence 45567777777777777644 78899999998888888899999999999999999865 78899999999998 88
Q ss_pred HHHhHHhcCCCCCcceEeeecCCCCCCC-C---CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 117 IAYNSTTNGITPALPHIKHSWGDAFPIP-N---PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++|+..|+++ ++.++.....+..+.. . ++-++|...|+- ...-+. +.++.+.+.-++--.++++
T Consensus 421 A~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPp-R~Glh~---~~ik~l~~~~~~~rlvyvS 489 (534)
T KOG2187|consen 421 AEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPP-RKGLHM---KVIKALRAYKNPRRLVYVS 489 (534)
T ss_pred hhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEECCC-cccccH---HHHHHHHhccCccceEEEE
Confidence 99999999994 2333333222332211 1 234556666664 222223 4555555443344333433
No 194
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.64 E-value=5e-07 Score=73.91 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=57.5
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
..+.+.+.+.....++.+|||+|||+|.++..+++.. .+|+++|+++.++ +.++.+... ..++ .+..+|...
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~-~~l~~~~~~---~~~v---~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLA-EILRKLLSL---YERL---EVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHH-HHHHHHhCc---CCcE---EEEECchhc
Confidence 3445555555556678899999999999999998874 6799999999987 666655432 1122 333333333
Q ss_pred CCCCCcc---EEEEcccc
Q 026036 143 IPNPDWD---LILASDIL 157 (244)
Q Consensus 143 ~~~~~fD---~I~~~~~l 157 (244)
.....+| +|+++-++
T Consensus 87 ~~~~~~d~~~~vvsNlPy 104 (253)
T TIGR00755 87 VDLPDFPKQLKVVSNLPY 104 (253)
T ss_pred CChhHcCCcceEEEcCCh
Confidence 2223466 78877664
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.64 E-value=6e-09 Score=80.12 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=98.8
Q ss_pred cceeechHHHHHHHHhhccCcc--cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcce
Q 026036 55 ANFLWPGTFSFAEWLMHHREWI--ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPH 132 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~--~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (244)
|.++--+...+.+++....+.. ...++||||+|.|-++..++.. -.+|+++++|..|. ..+++. .-|-+
T Consensus 88 GsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr-~rL~kk-~ynVl------ 158 (288)
T KOG3987|consen 88 GSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMR-DRLKKK-NYNVL------ 158 (288)
T ss_pred CceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHH-HHHhhc-CCcee------
Confidence 4444455666777665542222 3479999999999999888654 45699999999885 444321 11111
Q ss_pred EeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCC-CCceEeecc-----cccCCCCCCCCCCCeEEE
Q 026036 133 IKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKP-KDSQVGHLT-----KNEQGEGTEGLPWPAFLM 206 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~-gG~~~~~~~-----~~~~~~~~~~~~~~~~~~ 206 (244)
-..+|.+ .+-+||+|.|.+.+ .- ..+..+.++.++.++.| +|++++... ..+.+...... .|.-++
T Consensus 159 ~~~ew~~----t~~k~dli~clNlL-DR--c~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~L 230 (288)
T KOG3987|consen 159 TEIEWLQ----TDVKLDLILCLNLL-DR--CFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLL 230 (288)
T ss_pred eehhhhh----cCceeehHHHHHHH-Hh--hcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHH
Confidence 1233432 13479999999988 32 23445889999999999 999887711 11112211111 111111
Q ss_pred eeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 207 SWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
....+...+....|.++++.+||.++...
T Consensus 231 e~~Gr~~ee~v~~~~e~lr~~g~~veawT 259 (288)
T KOG3987|consen 231 ENNGRSFEEEVARFMELLRNCGYRVEAWT 259 (288)
T ss_pred HhcCccHHHHHHHHHHHHHhcCchhhhhh
Confidence 12222222234678889999999988543
No 196
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.64 E-value=6.6e-07 Score=69.92 Aligned_cols=139 Identities=21% Similarity=0.177 Sum_probs=93.7
Q ss_pred hHHHHHHHHhhccCccc----CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 61 GTFSFAEWLMHHREWIE----RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~----~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
++..+.+|+.......+ ..++|||||=+....... ..--.|+.+|+++.. . ++ .+.|
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~~--~---------~I------~qqD 91 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQH--P---------GI------LQQD 91 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCCC--C---------Cc------eeec
Confidence 88999999987643222 359999998655433222 234459999998732 1 11 1111
Q ss_pred cCC-CCC-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc-----eEeecccccCCCCCCCCCCCeEEEeee
Q 026036 137 WGD-AFP-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS-----QVGHLTKNEQGEGTEGLPWPAFLMSWR 209 (244)
Q Consensus 137 ~~~-~~~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (244)
.-+ ++| ...++||+|.++-|+-+.....+..++++.+++.|+|+|. ++++.+...- ..
T Consensus 92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv---------------~N 156 (219)
T PF11968_consen 92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCV---------------TN 156 (219)
T ss_pred cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHh---------------hc
Confidence 111 222 2346899999999997777788888999999999999999 8777444321 12
Q ss_pred eccCccchhhHHHHHhhcCCeEEEec
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.|+.. .+.|.++|+..||+..+..
T Consensus 157 SRy~~--~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 157 SRYMT--EERLREIMESLGFTRVKYK 180 (219)
T ss_pred ccccC--HHHHHHHHHhCCcEEEEEE
Confidence 23322 5789999999999877654
No 197
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.60 E-value=1e-06 Score=72.07 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=70.2
Q ss_pred cCCeEEEeCCCCc----HHHHHHHHhC------CCeEEEEeCChHHHHHHHHHhHHh-----cCCCC-------------
Q 026036 77 ERRRCIELGSGTG----ALAIFLRKAM------NLDITTSDYNDQEIEDNIAYNSTT-----NGITP------------- 128 (244)
Q Consensus 77 ~~~~VLdlG~G~G----~~~~~~a~~~------~~~v~~~D~~~~~l~~~~~~~~~~-----~~~~~------------- 128 (244)
..-||+-.||+|| .+++.+.+.+ ..+|+|+|++..++ +.++.-.-. .+++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L-~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVL-EKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHH-HHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 3569999999999 4455555544 36799999999987 555421100 11110
Q ss_pred ------C-cceEeeecCCCCCC--CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 129 ------A-LPHIKHSWGDAFPI--PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 129 ------~-~~~~~~~~~~~~~~--~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. -..+.+...+.+.. ..+.||+|+|-+|+ --.+.+.-.+.+..++..|+|||.+++..
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVL-IYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVL-IYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceE-EeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 0 01223333333221 34579999999998 32344555699999999999999988873
No 198
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.60 E-value=3.7e-07 Score=71.56 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred eEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CCCCCccEEEE
Q 026036 80 RCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNPDWDLILA 153 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~fD~I~~ 153 (244)
-+||||||.|...+.+|... ...++|+|+....+ ..+.+.+...++ ..+.+..++... +.++++|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v-~~a~~~~~~~~l----~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRV-AKALRKAEKRGL----KNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHH-HHHHHHHHHHTT----SSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHH-HHHHHHHHhhcc----cceEEEEccHHHHHhhcccCCchheEEE
Confidence 89999999999999999887 67899999999876 455455555455 233333333322 23568898887
Q ss_pred cccccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.+=-++.... --...+..+++.|+|||.+.+.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 65432221100 1127888999999999998887
No 199
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.58 E-value=2.6e-07 Score=77.83 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=75.6
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh--------CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA--------MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~--------~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
..+++++.......++.+|+|-+||+|.+...+... ...+++|+|+++.++ ..++.|+...+..... ..
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~-~la~~nl~l~~~~~~~--~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAV-ALAKLNLLLHGIDNSN--IN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHH-HHHHHHHHHTTHHCBG--CE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHH-HHHHhhhhhhcccccc--cc
Confidence 345555555556667789999999999998877652 367899999999876 6777777665542221 12
Q ss_pred eecCCCCCC----CCCCccEEEEcccccCC--cC----------------hHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 135 HSWGDAFPI----PNPDWDLILASDILLYV--KQ----------------YSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 135 ~~~~~~~~~----~~~~fD~I~~~~~l~~~--~~----------------~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..+++.+.. ....||+|+++.++-.. .. ...-...+..+.+.|++||+++++++
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 333343321 14589999999887322 00 01112477888999999999877744
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.57 E-value=1.3e-06 Score=77.11 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=73.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f 148 (244)
.+.+|.+|||+|||.|.=+.++|... ...|++.|+++.-+ ..++.|+...++.+ +.+...|.. ......|
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~n----v~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSN----VALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCe----EEEEeCchhhhhhhchhhc
Confidence 34588999999999999999988876 45799999999876 78888888877732 222222322 1223579
Q ss_pred cEEEE----c--ccccCCc------ChH-------HHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILA----S--DILLYVK------QYS-------NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~----~--~~l~~~~------~~~-------~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.|+. + .++..+. ... -..+.|..+.++|||||+++.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99995 2 1111110 000 1147778889999999999877
No 201
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=5.5e-08 Score=78.76 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=83.3
Q ss_pred CcceeechHHHHHHHHhhc---cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC----
Q 026036 54 NANFLWPGTFSFAEWLMHH---REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI---- 126 (244)
Q Consensus 54 ~~~~~w~~~~~l~~~~~~~---~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~---- 126 (244)
.|...|-++..+..++... .-...+++|||+|||+|+.++.+...+...+.+.|.+.+.+.-..--|...+..
T Consensus 90 Gg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~ 169 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVE 169 (282)
T ss_pred cceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhh
Confidence 3789999999999999855 345689999999999999999998887789999999987541111111111100
Q ss_pred -CCCcceEeeecC---CCCCCCCC--CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 127 -TPALPHIKHSWG---DAFPIPNP--DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 127 -~~~~~~~~~~~~---~~~~~~~~--~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+........... +..-...+ +||+|+++-++|.....+.+. .......+++.|.+++.
T Consensus 170 ~~e~~~~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~~~~--~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 170 EKENHKVDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLAVLY--LLHRPCLLKTDGVFYVA 233 (282)
T ss_pred hhhcccceeccccccccchhhhccccchhhhhhhhhhhCcchhhhhH--hhhhhhcCCccchhhhh
Confidence 000011111010 10111123 799999999997765555332 44555677888877665
No 202
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=4.8e-07 Score=71.48 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=101.9
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++..++..|...+....-..+|..+||+|+-||.++..+.+.++.+|+++|.....+.-.++.+. + .+.+
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~-------r--V~~~ 128 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP-------R--VIVL 128 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCC-------c--EEEE
Confidence 455668999999888877778999999999999999999999989999999998876533333221 1 1111
Q ss_pred ecCCCC---C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeec-ccccCCCCCCCCCCCeEEEeeee
Q 026036 136 SWGDAF---P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHL-TKNEQGEGTEGLPWPAFLMSWRR 210 (244)
Q Consensus 136 ~~~~~~---~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 210 (244)
.-.+.- + ...+..|+|+| |+. +-.+...+..+..+++|++-++..+ +.++-...... ..- +.. .+
T Consensus 129 E~tN~r~l~~~~~~~~~d~~v~-DvS-----FISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~-kkG-vv~--d~ 198 (245)
T COG1189 129 ERTNVRYLTPEDFTEKPDLIVI-DVS-----FISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVG-KKG-VVR--DP 198 (245)
T ss_pred ecCChhhCCHHHcccCCCeEEE-Eee-----hhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcC-cCc-eec--Cc
Confidence 111111 0 11236788887 443 3456688899999999998776663 33322221111 000 010 01
Q ss_pred ccCccchhhHHHHHhhcCCeEEEec
Q 026036 211 RIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 211 ~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.........+.+.+...||.+..+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 1111224677788888999988764
No 203
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.56 E-value=2.2e-06 Score=69.84 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=94.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~I 151 (244)
..-+||||.||.|..-+-+.... ..+|...|+++..+ +..+.-++..++.+.+.+...+..+. +.......+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv-~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV-EKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH-HHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45699999999998776665554 25799999999877 77778888888855444444333332 22235578999
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC---CCCCCC---CCeEEEeeeeccCccchhhHHHHHh
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE---GTEGLP---WPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
+.+..+-...+..-+..++..+.+.+.|||.++.+.-.+.... ...... -..|.+.+ | +..+.-++.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr--R----sq~EmD~Lv~ 287 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR--R----SQAEMDQLVE 287 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe--c----CHHHHHHHHH
Confidence 9988873333333355689999999999998777621111110 111111 12344422 2 1468889999
Q ss_pred hcCCeE
Q 026036 226 NAGLEV 231 (244)
Q Consensus 226 ~~Gf~v 231 (244)
++||+-
T Consensus 288 ~aGF~K 293 (311)
T PF12147_consen 288 AAGFEK 293 (311)
T ss_pred HcCCch
Confidence 999973
No 204
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.55 E-value=2.4e-07 Score=75.08 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=86.7
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC-------------CC-------------
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI-------------TP------------- 128 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~-------------~~------------- 128 (244)
..+|.++||||||.-+.....|.....+|+.+|..+... +.+++.+...+. ++
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~-~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR-EELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH-HHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH-HHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 346789999999997776555555567899999998765 444443322111 00
Q ss_pred -Ccc-eEeeecCCCCCCC-----CCCccEEEEcccccCC-cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCC
Q 026036 129 -ALP-HIKHSWGDAFPIP-----NPDWDLILASDILLYV-KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLP 200 (244)
Q Consensus 129 -~~~-~~~~~~~~~~~~~-----~~~fD~I~~~~~l~~~-~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~ 200 (244)
.+. .+..+....-+.. .++||+|++..++-.. ...+.-.+.++++.++|||||.|++.-...
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~---------- 202 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG---------- 202 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS----------
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC----------
Confidence 011 2233333332222 2359999999888211 245566799999999999999998872211
Q ss_pred CCeEEEeeee-ccCccchhhHHHHHhhcCCeEEEecc
Q 026036 201 WPAFLMSWRR-RIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 201 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
...|..+-++ .....+.+...+.++++||+++....
T Consensus 203 ~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 203 STYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp -SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1112222221 11122346667889999999998763
No 205
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.55 E-value=8.3e-07 Score=73.33 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCeEEEeCCCCcHH-HHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecCCC----CCCCCCCccEE
Q 026036 78 RRRCIELGSGTGAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWGDA----FPIPNPDWDLI 151 (244)
Q Consensus 78 ~~~VLdlG~G~G~~-~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~fD~I 151 (244)
..++||||+|...+ .+..++..+.+++|+|+++..+ +.+++|+..| .+..++..+....... +....+.||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl-~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSL-ESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHH-HHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHH-HHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999997744 5666666699999999999987 9999999999 8877776655433222 12234589999
Q ss_pred EEcccccCC
Q 026036 152 LASDILLYV 160 (244)
Q Consensus 152 ~~~~~l~~~ 160 (244)
+|++++|..
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999998654
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=7.7e-07 Score=70.18 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=79.4
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCC-ccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPD-WDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fD~I~~~~ 155 (244)
+.+++|||+|.|.+|+.+|-.. ..+|+.+|....-+ ..++.-....+++ ++..+.....+..+ ... ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~-~FL~~~~~eL~L~-nv~i~~~RaE~~~~--~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI-AFLREVKKELGLE-NVEIVHGRAEEFGQ--EKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH-HHHHHHHHHhCCC-CeEEehhhHhhccc--ccccCcEEEeeh
Confidence 5899999999999999988544 66799999987654 5555544444442 12233222222111 113 99999854
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+ ..+...+.-+...+|+||.++.. +-....+-..+....+...|+.++.+.
T Consensus 144 v-------a~L~~l~e~~~pllk~~g~~~~~----------------------k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 144 V-------ASLNVLLELCLPLLKVGGGFLAY----------------------KGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred c-------cchHHHHHHHHHhcccCCcchhh----------------------hHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 4 34557777888999998865421 000011113556677888888888775
Q ss_pred cE
Q 026036 236 SR 237 (244)
Q Consensus 236 ~~ 237 (244)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 43
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.49 E-value=2.9e-06 Score=78.97 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=85.2
Q ss_pred eechHHHHHHHHhhccCc-ccCCeEEEeCCCCcHHHHHHHHhC-------------------------------------
Q 026036 58 LWPGTFSFAEWLMHHREW-IERRRCIELGSGTGALAIFLRKAM------------------------------------- 99 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~-~~~~~VLdlG~G~G~~~~~~a~~~------------------------------------- 99 (244)
.-|-.+.||.-++..... .++..++|-+||+|.+.+.+|...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 334456777777765554 467899999999999998876531
Q ss_pred ------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEcccccCCcC-hHHHHHH--
Q 026036 100 ------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILASDILLYVKQ-YSNLIKS-- 169 (244)
Q Consensus 100 ------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~~~l~~~~~-~~~l~~~-- 169 (244)
..+++|+|+++.++ +.++.|+..+++...+.....++.+.. +...++||+|++|.++..... ..++...
T Consensus 250 ~~~~~~~~~i~G~Did~~av-~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVI-QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred hcccccCceEEEEECCHHHH-HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 13699999999997 899999999988654444444443321 112347999999988632211 1223333
Q ss_pred -HHHHHHhcCCCCceEeecc
Q 026036 170 -LSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 170 -l~~~~~~lk~gG~~~~~~~ 188 (244)
+.+..+...+|++.++.+.
T Consensus 329 ~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeC
Confidence 3333444448988877743
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.48 E-value=2e-07 Score=70.41 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=53.3
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CC-CccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NP-DWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~fD~I~~~~~l 157 (244)
.|+|+.||.|..++.+|+. ..+|+++|+++..+ +.++.|+...++..++..+..+|.+..... .. .+|+|+++++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~-~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERL-ECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHH-HHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999987 77899999999987 899999999988777777777765543221 12 28999997764
No 209
>PLN02823 spermine synthase
Probab=98.47 E-value=8.6e-07 Score=75.06 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---CCCCCCccEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---PIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~fD~I~ 152 (244)
..++||.||+|.|..+..+.+.. ..+|+++|++++++ +.+++....+.-...-..+++..+|.. ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv-~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVV-DFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHH-HHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45699999999999998877654 56899999999976 788776543321001122333344332 23346899999
Q ss_pred EcccccCCcC--hH-H--HHHHHH-HHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQ--YS-N--LIKSLS-VLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~--~~-~--l~~~l~-~~~~~lk~gG~~~~~ 186 (244)
+ |+. .... .. . -...++ .+.+.|+|||.+++.
T Consensus 182 ~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 G-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred e-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 7 432 2210 00 0 125666 788999999987655
No 210
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.47 E-value=1.6e-07 Score=81.66 Aligned_cols=124 Identities=14% Similarity=0.205 Sum_probs=75.0
Q ss_pred cceeechHHHHHHHHhhccCc--ccC--CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 55 ANFLWPGTFSFAEWLMHHREW--IER--RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~--~~~--~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
|.++..++..-.+.|.+.... ..| ..+||+|||+|.++..+..+ + |+.+-+.+....++..+.+..-+++.-+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~--V~t~s~a~~d~~~~qvqfaleRGvpa~~ 167 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-N--VTTMSFAPNDEHEAQVQFALERGVPAMI 167 (506)
T ss_pred CccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-C--ceEEEcccccCCchhhhhhhhcCcchhh
Confidence 555555666555555554433 222 36999999999999888655 3 3333332211111111222333442111
Q ss_pred ceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 PHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. .-....+++++..||+|-|+.|+-.+.... ...|-++-|+|+|||.|+++
T Consensus 168 ~---~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 168 G---VLGSQRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred h---hhccccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEec
Confidence 1 112356889999999999999984443333 25778899999999998887
No 211
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.46 E-value=7.2e-07 Score=71.12 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=79.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
....|-|+|||-+-++. .-..+|...|+-+.. . ..+..+..+ .|..+++.|++|+.-.
T Consensus 180 ~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~~------------~-----~V~~cDm~~-vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS----SERHKVHSFDLVAVN------------E-----RVIACDMRN-VPLEDESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh----ccccceeeeeeecCC------------C-----ceeeccccC-CcCccCcccEEEeeHh
Confidence 45689999999998764 225568888864310 0 122333333 6777889999887665
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
+ . ..++...+.++.|+|++||.++|. ..+.|+.. ...|.+.+...||++++..
T Consensus 238 L-M---gtn~~df~kEa~RiLk~gG~l~IA--------------------Ev~SRf~d--v~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 238 L-M---GTNLADFIKEANRILKPGGLLYIA--------------------EVKSRFSD--VKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred h-h---cccHHHHHHHHHHHhccCceEEEE--------------------ehhhhccc--HHHHHHHHHHcCCeeeehh
Confidence 5 2 346779999999999999987765 23445543 7889999999999998775
No 212
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.43 E-value=1.4e-06 Score=72.68 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=95.2
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
...+|+|+|.|.++..+... ..+|-+++.+...+ ...+.+.. .++ +...++.+.. .++-|+|++-.++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v-~~~a~~~~-~gV-------~~v~gdmfq~-~P~~daI~mkWiL- 246 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFV-LAAAPYLA-PGV-------EHVAGDMFQD-TPKGDAIWMKWIL- 246 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHH-Hhhhhhhc-CCc-------ceeccccccc-CCCcCeEEEEeec-
Confidence 68999999999999888774 56699999987765 33333332 232 2223344433 4456899999999
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC--C---CCCCCC-CeEEEeeeeccCccchhhHHHHHhhcCCeEE
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE--G---TEGLPW-PAFLMSWRRRIGKEDETIFFTSCENAGLEVK 232 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 232 (244)
++-..+++.+.|+++...|+|||.+++...-.++.. . ...... ...+....+--...+..+|..++.++||.+.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVC 326 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCcee
Confidence 666678999999999999999999988844222211 1 000111 1111111111111124788889999999988
Q ss_pred EeccEEE
Q 026036 233 HLGSRVY 239 (244)
Q Consensus 233 ~~~~~~~ 239 (244)
.+.-..|
T Consensus 327 ~~~~~~~ 333 (342)
T KOG3178|consen 327 MVALTAY 333 (342)
T ss_pred EEEeccC
Confidence 8765544
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.4e-06 Score=66.18 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhccC--cccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCC------C
Q 026036 61 GTFSFAEWLMHHRE--WIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITP------A 129 (244)
Q Consensus 61 ~~~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~------~ 129 (244)
++..+-..+.+... +.+|.+.||+|+|||.++-.++... +..++|+|.-++.+ +..++|+...-... .
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLV-e~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELV-EYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHH-HHHHHHHHhhccCchhhhhhc
Confidence 34444444443333 5689999999999999998887655 33458999988865 77777776443110 0
Q ss_pred cceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-....+..+|... ....+||.|.+.... + +..+++...|++||++++-
T Consensus 143 ~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~---~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAEQAPYDAIHVGAAA------S---ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCceEEEeCCccccCCccCCcceEEEccCc------c---ccHHHHHHhhccCCeEEEe
Confidence 0111222334322 234589999986332 2 4456688889999998876
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.36 E-value=4.6e-06 Score=75.32 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=50.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------ 141 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (244)
.+.+|||.|||+|.+...++... ..+++++|+++.++ ..++.++...+. ... ...+.+.+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~-~~a~~~l~~~~~-~~~---~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLL-KRAKKLLGEFAL-LEI---NVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHH-HHHHHHHhhcCC-CCc---eeeecccccccccc
Confidence 45699999999999988876544 25699999999876 777777655431 011 11111111
Q ss_pred -CCCCCCccEEEEcccc
Q 026036 142 -PIPNPDWDLILASDIL 157 (244)
Q Consensus 142 -~~~~~~fD~I~~~~~l 157 (244)
....++||+|++|+++
T Consensus 106 ~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 106 IESYLDLFDIVITNPPY 122 (524)
T ss_pred cccccCcccEEEeCCCc
Confidence 1112579999999986
No 215
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.36 E-value=3.1e-06 Score=68.08 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=63.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI 143 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (244)
.+.+.+.......++..|||+|-|||.++..+.+. +++|+++++++.|+ +.+++...-...+.. .++-.+|.+..
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmv-ael~krv~gtp~~~k---LqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMV-AELEKRVQGTPKSGK---LQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHH-HHHHHHhcCCCccce---eeEEecccccC
Confidence 34445555567778899999999999999999876 88999999999987 555554432222222 33344566666
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..+.||.+|++-+.
T Consensus 120 d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLPRFDGCVSNLPY 133 (315)
T ss_pred CCcccceeeccCCc
Confidence 66789999986553
No 216
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=2.8e-06 Score=67.91 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=70.2
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEEcc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILASD 155 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~~~ 155 (244)
..+||||||.|...+.+|+.. ...++|+|+....+ ..+.+.+...+++ ++..+..+..+.+. .++++.|-|..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v-~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGV-AKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHH-HHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 489999999999999999887 56799999998766 4555555555552 22233222222222 2344888888765
Q ss_pred cccCCcChH-----HHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYS-----NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~-----~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+=-++.... --...++.+.+.|+|||.+.+.
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 542221111 1127788999999999998887
No 217
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.34 E-value=1e-05 Score=60.13 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=51.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHH-----hCCCeEEEEeCChHHHHHHHHHhHHhcC--CCCCcceEeeecCCCCCCCCCCc
Q 026036 76 IERRRCIELGSGTGALAIFLRK-----AMNLDITTSDYNDQEIEDNIAYNSTTNG--ITPALPHIKHSWGDAFPIPNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~-----~~~~~v~~~D~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f 148 (244)
.+..+|+|+|||.|.++..++. ..+.+|+++|.++..+ +.+.+...... .............+. ......
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADE--SSSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhh--cccCCC
Confidence 5677999999999999999988 5688999999999876 55554444333 211222222111111 114567
Q ss_pred cEEEEcccc
Q 026036 149 DLILASDIL 157 (244)
Q Consensus 149 D~I~~~~~l 157 (244)
+++++.+.-
T Consensus 101 ~~~vgLHaC 109 (141)
T PF13679_consen 101 DILVGLHAC 109 (141)
T ss_pred eEEEEeecc
Confidence 888887665
No 218
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.33 E-value=2.8e-05 Score=63.55 Aligned_cols=144 Identities=16% Similarity=0.173 Sum_probs=87.6
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH-HhH--HhcCC---------C------CCcce-----
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA-YNS--TTNGI---------T------PALPH----- 132 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~-~~~--~~~~~---------~------~~~~~----- 132 (244)
..+.+||==|||.|.++..+|.+ +..+.|.|.|--|+...-- .|. ..+.. + .++..
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999987 7799999999988522110 111 00100 0 00111
Q ss_pred ------------EeeecCCCCC--CC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCC
Q 026036 133 ------------IKHSWGDAFP--IP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEG 195 (244)
Q Consensus 133 ------------~~~~~~~~~~--~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~ 195 (244)
..+..+|... .. .++||+|+....+ ...+++.+.|+.+.++|||||.++=. ++
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI---DTA~Ni~~Yi~tI~~lLkpgG~WIN~--GP----- 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI---DTAENIIEYIETIEHLLKPGGYWINF--GP----- 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe---echHHHHHHHHHHHHHhccCCEEEec--CC-----
Confidence 1112222111 11 3589999997554 45778999999999999999954322 11
Q ss_pred CCCCCCCeEEEeee----eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 196 TEGLPWPAFLMSWR----RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 196 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
+ .|-.... ......+.+++..+++..||++++...
T Consensus 204 -L-----lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 204 -L-----LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -c-----cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1 1111110 001223468999999999999986544
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=7.5e-06 Score=64.44 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=76.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-----CCCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-----IPNP 146 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 146 (244)
.....+++||||.=||..++..|... +.+|+++|++++.. +...+-.+..+...++..++....+.++ ...+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~-~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAY-EIGLELVKLAGVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHH-HHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCC
Confidence 34567899999998998888877766 77899999999876 6666666666776555555443333221 2356
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||+++. |.. ...-.....++.+++|+||.+++-
T Consensus 149 tfDfaFv-Dad-----K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 149 TFDFAFV-DAD-----KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred ceeEEEE-ccc-----hHHHHHHHHHHHhhcccccEEEEe
Confidence 8999987 322 233348889999999999987775
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=8.8e-06 Score=64.15 Aligned_cols=108 Identities=16% Similarity=0.135 Sum_probs=58.4
Q ss_pred hccCcccCCeEEEeCCCCcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHH-------hHHhcCCCCCcceEeeecCCCCC
Q 026036 71 HHREWIERRRCIELGSGTGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAY-------NSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 71 ~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
+...+.++...+|||||.|...+.+|...+++ .+|+++.+... +.++. .....+. ....+.+..++.+.
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~-~~a~~~~~~~~~~~~~~g~--~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH-DLAEELLEELKKRMKHYGK--RPGKVELIHGDFLD 112 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH-HHHHHHHHHHHHHHHHCTB-----EEEEECS-TTT
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH-HHHHHHHHHHHHHHHHhhc--ccccceeeccCccc
Confidence 34456788899999999999987776655554 99999998632 33322 2222222 22344455544432
Q ss_pred CC-----CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 143 IP-----NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 143 ~~-----~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.. -...|+|++++..|. +++...|.++...||+|.+++.
T Consensus 113 ~~~~~~~~s~AdvVf~Nn~~F~----~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 113 PDFVKDIWSDADVVFVNNTCFD----PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHHGHC-SEEEE--TTT-----HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cHhHhhhhcCCCEEEEeccccC----HHHHHHHHHHHhcCCCCCEEEE
Confidence 11 134699999998843 3556777888888998876543
No 221
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.26 E-value=1.4e-05 Score=62.28 Aligned_cols=105 Identities=15% Similarity=0.248 Sum_probs=78.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEc
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~ 154 (244)
.+|.+||++|-|.|+..-.+.+....+=+-++..++.+ +.++.+.... +.++......|.|.++ .+++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~y- 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-KRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYY- 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-HHHHhccccc--ccceEEEecchHhhhccccccCcceeEe-
Confidence 57889999999999999888766666677789999876 6666554322 2244556678887765 34668998875
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++ .+..+++..+.+.+.++|||+|++-..
T Consensus 176 DTy--~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DTY--SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ech--hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 442 245678889999999999999987665
No 222
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.25 E-value=1.8e-05 Score=65.46 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=65.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcc-eEeeecCCCCCCCCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALP-HIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fD~ 150 (244)
+.+...+|||+|||.|....++.... -.+++++|.|+.|+ +..+.-... ....... .......+..+. ...|+
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~-~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~DL 105 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEML-ELAKRLLRA-GPNNRNAEWRRVLYRDFLPF--PPDDL 105 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHH-HHHHHHHhc-ccccccchhhhhhhcccccC--CCCcE
Confidence 34566799999999998776665443 45799999999986 555443222 1111100 000001111111 23499
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
|+++++|-.-.. ....+.++.+-+.+++ .++++.++
T Consensus 106 vi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 106 VIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred EEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCC
Confidence 999999944444 6666777777666654 67777333
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.7e-05 Score=64.33 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=60.8
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (244)
.+.+.......++..|||||+|.|.++..+++. +.+|+++++++.++ +.+++.... ...+.+.++|.+...-
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~-~~L~~~~~~------~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLA-EVLKERFAP------YDNLTVINGDALKFDF 90 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHH-HHHHHhccc------ccceEEEeCchhcCcc
Confidence 555555566667889999999999999999987 77799999999876 666554331 1234555666655443
Q ss_pred C---CccEEEEcccc
Q 026036 146 P---DWDLILASDIL 157 (244)
Q Consensus 146 ~---~fD~I~~~~~l 157 (244)
. .++.|++|-+.
T Consensus 91 ~~l~~~~~vVaNlPY 105 (259)
T COG0030 91 PSLAQPYKVVANLPY 105 (259)
T ss_pred hhhcCCCEEEEcCCC
Confidence 3 67899998775
No 224
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=8.4e-05 Score=63.72 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=73.8
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 147 (244)
..+.+|.+|||++++-|.=+.++++.. +..|+++|.++.-+ ..++.|+...++.+ +..+..+-..... ....+
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 456688999999999998888888776 35579999999876 78888888888743 2222222211111 11225
Q ss_pred ccEEEEc------ccccCC------cC------hHH-HHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILAS------DILLYV------KQ------YSN-LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~------~~l~~~------~~------~~~-l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||.|+.= .++..+ .. ... ..+.|....+.+||||+++.+
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999871 122111 01 111 236778899999999998877
No 225
>PRK00536 speE spermidine synthase; Provisional
Probab=98.18 E-value=1.6e-05 Score=64.86 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=65.5
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc--CC-CCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN--GI-TPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++||=+|.|-|.....+.+. ..+|+.+|++++++ +.+++..... .. .+++..+. + ......++||+||+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv-~~~k~~lP~~~~~~~DpRv~l~~--~--~~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKIL-DSFISFFPHFHEVKNNKNFTHAK--Q--LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHH-HHHHHHCHHHHHhhcCCCEEEee--h--hhhccCCcCCEEEE
Confidence 4579999999999999999876 45999999999876 7777632211 11 12333322 1 11112358999996
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|.+|. + ...+.+.+.|+|||.++..
T Consensus 146 -Ds~~~----~---~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 146 -LQEPD----I---HKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred -cCCCC----h---HHHHHHHHhcCCCcEEEEC
Confidence 65522 2 5667899999999987775
No 226
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.18 E-value=4.6e-05 Score=60.10 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=78.6
Q ss_pred EEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCC-CccEEEEcccc
Q 026036 81 CIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNP-DWDLILASDIL 157 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~fD~I~~~~~l 157 (244)
|.|+||--|.+++.+.+.+ ..+++++|+++..+ +.++.++...++..++ .+..++.+.. ..+ ..|+|+.+.+=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-~~A~~~i~~~~l~~~i---~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-EKAKENIAKYGLEDRI---EVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-HHHHHHHHHTT-TTTE---EEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCcccE---EEEECCcccccCCCCCCCEEEEecCC
Confidence 6899999999999999887 45699999999987 8899999988876544 4445554432 222 37888886652
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEe---
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHL--- 234 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~--- 234 (244)
.....+.+.+....++...+|++. |... ...+.+.+.++||++.+-
T Consensus 77 -----G~lI~~ILe~~~~~~~~~~~lILq-----------------------P~~~---~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 -----GELIIEILEAGPEKLSSAKRLILQ-----------------------PNTH---AYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -----HHHHHHHHHHTGGGGTT--EEEEE-----------------------ESS----HHHHHHHHHHTTEEEEEEEEE
T ss_pred -----HHHHHHHHHhhHHHhccCCeEEEe-----------------------CCCC---hHHHHHHHHHCCCEEEEeEEE
Confidence 233345555554444443333332 2222 368889999999987643
Q ss_pred --ccEEEEE
Q 026036 235 --GSRVYCI 241 (244)
Q Consensus 235 --~~~~~~~ 241 (244)
..+.|.|
T Consensus 126 ~e~~~~YeI 134 (205)
T PF04816_consen 126 EENGRFYEI 134 (205)
T ss_dssp EETTEEEEE
T ss_pred eECCEEEEE
Confidence 3555544
No 227
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=5.3e-05 Score=64.47 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=70.9
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC---------------------------------C-------
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN---------------------------------L------- 101 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~---------------------------------~------- 101 (244)
-+.||.-+.......++..++|--||+|.+.+.+|.... +
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 567777777777777778999999999999998887641 1
Q ss_pred eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 102 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 102 ~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.++|+|+++.++ +.++.|+...++.+.+.+...+..+..+ ....+|+||||.+.
T Consensus 256 ~~~G~Did~r~i-~~Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPY 309 (381)
T COG0116 256 IIYGSDIDPRHI-EGAKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPY 309 (381)
T ss_pred eEEEecCCHHHH-HHHHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCc
Confidence 377999999998 8999999999886555554444432211 11589999998884
No 228
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.13 E-value=2.9e-05 Score=64.14 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=69.9
Q ss_pred CeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---CCCCCccEEEEc
Q 026036 79 RRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---IPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~fD~I~~~ 154 (244)
++||-||.|.|..+..+.+.. -.+++.+|+++..+ +.+++..........-+.+.+..+|... ....+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi-~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~- 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVI-ELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV- 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHH-HHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE-
Confidence 599999999999999998776 47899999999876 7777654432210011233443444322 22347999987
Q ss_pred ccccCCcCh-HH--HHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQY-SN--LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~-~~--l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ..... +. -...++.+.+.|+++|.++..
T Consensus 156 D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 554 32111 11 127889999999999977665
No 229
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.12 E-value=6.3e-06 Score=70.32 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=77.2
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...++.+++|+|||.|.+...++....++++++|.++..+...-..+. ...+..+... .+.|.-..++++..||.+.+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~-~~~~~~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNF-VVADFGKMPFEDNTFDGVRF 184 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcce-ehhhhhcCCCCccccCcEEE
Confidence 345677999999999999999988778999999999865422211111 1122222222 34444445777889999999
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.++..+ .++....++++.+++||||.++..
T Consensus 185 ld~~~~---~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCH---APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred Eeeccc---CCcHHHHHHHHhcccCCCceEEeH
Confidence 999933 456669999999999999987765
No 230
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.11 E-value=6.4e-06 Score=62.72 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=69.7
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
..+-|||+|+|.++..+|.. ..+|++++.++.-. +.+.+|+..++. ..++...+|.....-+..|+|+|- ++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a-~~a~eN~~v~g~----~n~evv~gDA~~y~fe~ADvvicE-ml- 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRA-RLAEENLHVPGD----VNWEVVVGDARDYDFENADVVICE-ML- 105 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHH-HHhhhcCCCCCC----cceEEEecccccccccccceeHHH-Hh-
Confidence 68999999999999988876 88999999999854 778888877666 234444555544433567999882 22
Q ss_pred CC-cChHHHHHHHHHHHHhcCCCCceEe
Q 026036 159 YV-KQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 159 ~~-~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.. .-.+..+..+..+...|+-.+.++=
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 1223445777777888888776543
No 231
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=9.5e-05 Score=59.67 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=71.0
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCCC
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPNP 146 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 146 (244)
.......+|.+|||-|+|+|.++-++++.. ..+++..|..+.-. +.+.+.-+..++...+....-|... .....+.
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra-~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA-EKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH-HHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 334567899999999999999999998876 46799999977543 4444445556676666665555543 2223345
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCc
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDS 182 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~ 182 (244)
.+|.|+. |+ ++...++-.++++||.+|.
T Consensus 177 ~aDaVFL-Dl-------PaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 177 KADAVFL-DL-------PAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred ccceEEE-cC-------CChhhhhhhhHHHhhhcCc
Confidence 7888775 33 2334666677888888774
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.06 E-value=5e-05 Score=63.86 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=67.1
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCC---C--C
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFP---I--P 144 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~--~ 144 (244)
.++..++|+|||+|.=...+.... ..+++++|+|.+++ +.+..++.....+. .+.-+..+..+.+. . .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L-~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSEL-QRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHH-HHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccc
Confidence 366789999999997654433322 46799999999988 44444444222211 11112222222221 1 1
Q ss_pred CCCccEEEEcc-cccCCcChHHHHHHHHHHHH-hcCCCCceEee
Q 026036 145 NPDWDLILASD-ILLYVKQYSNLIKSLSVLLK-SYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~-~l~~~~~~~~l~~~l~~~~~-~lk~gG~~~~~ 186 (244)
.....+++.-. ++ .....+.....|+.+++ .|+|||.+++.
T Consensus 154 ~~~~r~~~flGSsi-GNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 154 RSRPTTILWLGSSI-GNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cCCccEEEEeCccc-cCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 22356666654 44 44556677899999999 99999999887
No 233
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.06 E-value=8.3e-06 Score=67.74 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=41.7
Q ss_pred HhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhH
Q 026036 69 LMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 69 ~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
+++...+.++..+||.+||.|..+..+++.. ..+|+|+|.+++++ +.++++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al-~~ak~~L 64 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI-AAAKDRL 64 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH-HHHHHhh
Confidence 3334445577899999999999999999886 37899999999987 6666554
No 234
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.02 E-value=0.00012 Score=54.22 Aligned_cols=102 Identities=21% Similarity=0.272 Sum_probs=63.5
Q ss_pred EEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCC-CCccEEEEccc
Q 026036 81 CIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLILASDI 156 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~I~~~~~ 156 (244)
++|+|||+|... .++.... ..++++|+++.++ ...+........ ..+.....+... ..++.. ..||++ +...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEML-ALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHH-HHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 999999999876 3333333 4899999999876 443332221111 002233333333 245544 479999 5555
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
..++.. ....+.++.+.++|+|.+++....
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 434433 558899999999999998887443
No 235
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.02 E-value=5.9e-06 Score=67.20 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCC-CccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNP-DWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~fD~I 151 (244)
+.++||=||.|.|.....+.+.. ..+|+++|+++.++ +.+++..........-+.+.+..+|. +..... +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv-~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVV-ELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHH-HHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHH-HHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 56799999999999998887654 46899999999876 77776544322110111233333333 222234 89999
Q ss_pred EEcccccCCcChHH---HHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSN---LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~---l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. |.. ....... -...++.+.+.|+|+|.+++.
T Consensus 155 i~-D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IV-DLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EE-ESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EE-eCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 87 443 2111111 137889999999999977664
No 236
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.97 E-value=8.7e-05 Score=66.62 Aligned_cols=108 Identities=18% Similarity=0.101 Sum_probs=69.0
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~I~~~ 154 (244)
.+..+||||||.|.+...+|... ...++|+|+....+...+ +.+...++. ++..+..+.... ..++++++|.|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~-N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNIT-NFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCC-eEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 46689999999999999999887 567999999987663333 334444442 122221111100 11345679988886
Q ss_pred ccccCCc--ChH---HHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVK--QYS---NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~--~~~---~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+=-++. +.. --...++.+++.|||||.+.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 5542221 101 1127888999999999988776
No 237
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.96 E-value=2.5e-06 Score=66.14 Aligned_cols=118 Identities=17% Similarity=0.172 Sum_probs=66.3
Q ss_pred chHHHHHHHHhhccCcc--cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee
Q 026036 60 PGTFSFAEWLMHHREWI--ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH 135 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~--~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 135 (244)
.++..|.+......-.. .+.+||||||+.|..+..+.+.. ..+|+|+|+.+.. .. .+.. .+... ....
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--~~--~~~~--~i~~d--~~~~ 75 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--PL--QNVS--FIQGD--ITNP 75 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--S---TTEE--BTTGG--GEEE
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc--cc--ccee--eeecc--cchh
Confidence 36677777776665333 45899999999999999998886 5889999998741 00 0000 01000 0110
Q ss_pred ecC----CCCCCCCCCccEEEEcccccCC---------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWG----DAFPIPNPDWDLILASDILLYV---------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~----~~~~~~~~~fD~I~~~~~l~~~---------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... +.+.....++|+|+| |+-... ....-....+.-+...|+|||.+++.
T Consensus 76 ~~~~~i~~~~~~~~~~~dlv~~-D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 76 ENIKDIRKLLPESGEKFDLVLS-DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp EHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred hHHHhhhhhccccccCcceecc-ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 000 111112258999998 441111 11222335555666789999988775
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.0004 Score=54.31 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=70.9
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCC--eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG 138 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~--~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (244)
++..|.+...++.-+.++.+|+||||-.|..+..+++..+. .|+++|+.+-.. ++ .+..++.+..
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------~~-~V~~iq~d~~ 95 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------IP-GVIFLQGDIT 95 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------CC-CceEEeeecc
Confidence 67777777777755667899999999999999999888754 499999987321 11 1234444433
Q ss_pred CCCC-------CCCCCccEEEEccccc--------CCcChHHHH-HHHHHHHHhcCCCCceEee
Q 026036 139 DAFP-------IPNPDWDLILASDILL--------YVKQYSNLI-KSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 139 ~~~~-------~~~~~fD~I~~~~~l~--------~~~~~~~l~-~~l~~~~~~lk~gG~~~~~ 186 (244)
+... ....++|+|++ |+-- +|.....+. .++.-....|+|||.+++-
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 3211 12234798885 3322 222222333 3344455799999988775
No 239
>PRK10742 putative methyltransferase; Provisional
Probab=97.89 E-value=7.5e-05 Score=60.08 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=54.6
Q ss_pred CcccCC--eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcC----CCCCc-ceEeeecCCC---CCC
Q 026036 74 EWIERR--RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNG----ITPAL-PHIKHSWGDA---FPI 143 (244)
Q Consensus 74 ~~~~~~--~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~----~~~~~-~~~~~~~~~~---~~~ 143 (244)
.+.+|. +|||+-+|+|..++.++.. +++|+++|.++... ..++.++.... +...+ ..+.+..++. +..
T Consensus 83 glk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~va-alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 83 GIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVA-ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 344666 8999999999999999877 66799999999754 56666555421 11000 1233333332 222
Q ss_pred CCCCccEEEEcccccCCcC
Q 026036 144 PNPDWDLILASDILLYVKQ 162 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~ 162 (244)
...+||+|+. |+.|-+..
T Consensus 161 ~~~~fDVVYl-DPMfp~~~ 178 (250)
T PRK10742 161 ITPRPQVVYL-DPMFPHKQ 178 (250)
T ss_pred CCCCCcEEEE-CCCCCCCc
Confidence 2347999997 66655543
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.84 E-value=0.00055 Score=57.63 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhcc-------CcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 61 GTFSFAEWLMHHR-------EWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 61 ~~~~l~~~~~~~~-------~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
++..|.+.+.... ...+|.++|||||++|..+..+.+. +.+|+++|..+
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~ 243 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP 243 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh
Confidence 5666666654432 2468999999999999999999887 56999999655
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.84 E-value=8e-05 Score=55.17 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=43.9
Q ss_pred eEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec
Q 026036 80 RCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW 137 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (244)
.|||+|||.|..+..+++.+. .+|+++|.++.++ +.+++|...|+.+ ++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-~~l~~~~~~n~~~-~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-EILEENVKLNNLP-NVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-HHHHHHHHHcCCC-cEEEEEeee
Confidence 489999999999999988763 4899999999986 8888888887763 244444333
No 242
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.79 E-value=2.3e-05 Score=61.18 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=79.5
Q ss_pred eechHHHHHHHHhhccC-cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee
Q 026036 58 LWPGTFSFAEWLMHHRE-WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~-~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
.|-.-+.++.++..... ...-..|+|.-||.|..++-++.+ ++.|+++|+++..+ ..++.|++..+++.++..++.+
T Consensus 74 fsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikI-a~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 74 FSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKI-ACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred EEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHH-HHHhccceeecCCceeEEEech
Confidence 34344444544443321 114468999999999888888766 88999999999887 8889999999998888777776
Q ss_pred cCCC---CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 137 WGDA---FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 137 ~~~~---~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
|-+. +.+....+|+|+.+.+. . ...-+...+-.+...++|.|
T Consensus 152 ~ld~~~~lq~~K~~~~~vf~sppw-g--gp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 152 FLDLASKLKADKIKYDCVFLSPPW-G--GPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred HHHHHHHHhhhhheeeeeecCCCC-C--CcchhhhhhhhhhhhcchhH
Confidence 6543 23333357788887765 2 22333455555666666654
No 243
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.78 E-value=0.0024 Score=51.08 Aligned_cols=152 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
+...+..+..=+.|+.++.. ..|++||=+|= -=+.|++++..+ ..+|+.+|+++..+ +..++.+...+++ +..+
T Consensus 23 ~~~T~eT~~~Ra~~~~~~gd-L~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~--i~~~ 97 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERGD-LEGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP--IEAV 97 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT----EEEE
T ss_pred ccccHHHHHHHHHHHHhcCc-ccCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc--eEEE
Confidence 34445566666677766544 57899999983 335566666544 78999999999876 8888888887773 5666
Q ss_pred eeecCCCCCCC-CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC-ceEeecccccCCCCCCCCCCCeEEEeeeec
Q 026036 134 KHSWGDAFPIP-NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD-SQVGHLTKNEQGEGTEGLPWPAFLMSWRRR 211 (244)
Q Consensus 134 ~~~~~~~~~~~-~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (244)
..+..+++|.. .++||++++ |+.|. .+-+.-.+.+....||..| ..++. +..+
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~T-DPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~---------------------~~~~ 152 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFT-DPPYT---PEGLKLFLSRGIEALKGEGCAGYFG---------------------FTHK 152 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE----SS---HHHHHHHHHHHHHTB-STT-EEEEE---------------------E-TT
T ss_pred EecccccCCHHHhcCCCEEEe-CCCCC---HHHHHHHHHHHHHHhCCCCceEEEE---------------------EecC
Confidence 66776776643 568999988 44434 3455577788888888755 33332 2211
Q ss_pred c-CccchhhHHHHHhhcCCeEEEecc
Q 026036 212 I-GKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 212 ~-~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
. ....+..+-+.+.+.||.++.+-.
T Consensus 153 ~~s~~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 153 EASPDKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp T--HHHHHHHHHHHHTS--EEEEEEE
T ss_pred cCcHHHHHHHHHHHHHCCcCHHHHHh
Confidence 1 111234566777789999988754
No 244
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.77 E-value=4.5e-05 Score=65.36 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=65.3
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
-|||+|+|||++++.+++.++-.|++++.-..|. +.+++-...|+.++++..+.-...+-......+-|+++..+.. .
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~-d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd-t 146 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV-DLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD-T 146 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHH-HHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh-h
Confidence 5899999999999999999888899999988887 8888888999998877776443332222222346666554432 1
Q ss_pred CcChHHHHHHHHHHHHhcC
Q 026036 160 VKQYSNLIKSLSVLLKSYK 178 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk 178 (244)
..-.+-+..+++++++.|-
T Consensus 147 EligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 147 ELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhccccchhHHHHHHHhc
Confidence 1111224455666665443
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0085 Score=46.60 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=73.2
Q ss_pred ceeech-HHHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhCC-CeEEEEeCChHHHHHHHHHhHHhcCCCCCc
Q 026036 56 NFLWPG-TFSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAMN-LDITTSDYNDQEIEDNIAYNSTTNGITPAL 130 (244)
Q Consensus 56 ~~~w~~-~~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~ 130 (244)
...|+. --.|+.-++. ..++.+|.+||=||+-+|....+.+.-.+ ..+++++.++.+..+.+......+++ +
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni---~ 127 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNI---I 127 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCc---e
Confidence 445544 2244444443 25677999999999999988888876654 67999999998665555433333333 1
Q ss_pred ceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 131 PHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 131 ~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+--|...+.. ..-+..|+|+. |+- ...+..=...++...||+||.+++.
T Consensus 128 -PIL~DA~~P~~Y~~~Ve~VDviy~-DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 128 -PILEDARKPEKYRHLVEKVDVIYQ-DVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred -eeecccCCcHHhhhhcccccEEEE-ecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 11111111111 12245777765 443 2334445557788899999977765
No 246
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.60 E-value=0.00048 Score=54.34 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=70.6
Q ss_pred cceeech-HHHHHHHHhh---ccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 55 ANFLWPG-TFSFAEWLMH---HREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 55 ~~~~w~~-~~~l~~~~~~---~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
+..+|.. --.|+..+.. ...+.+|.+||-||+.+|..-.+++.-. ...|++++.|+....+.+.-.....++
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NI-- 124 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNI-- 124 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTE--
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCce--
Confidence 3445654 2345555543 3567789999999999999888887654 457999999997654444322222222
Q ss_pred CcceEeeecCCCCC--CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 129 ALPHIKHSWGDAFP--IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 129 ~~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++.+ -|...+.. ..-+..|+|++ |+- ...+..-++.++...||+||.+++.
T Consensus 125 -iPIl-~DAr~P~~Y~~lv~~VDvI~~-DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 125 -IPIL-EDARHPEKYRMLVEMVDVIFQ-DVA----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEE-S-TTSGGGGTTTS--EEEEEE-E-S----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -eeee-ccCCChHHhhcccccccEEEe-cCC----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 1222 12222211 12347898887 553 2345556667888899999998887
No 247
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.59 E-value=0.00062 Score=56.00 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=59.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
...+++.+.+.....++..|||+|+|+|.++..++..+ .+|+++|+++..+ +.++..... ..+ +++..+|.+
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~-~~L~~~~~~---~~~---~~vi~~D~l 86 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLA-KHLKERFAS---NPN---VEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHH-HHHHHHCTT---CSS---EEEEES-TT
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHH-HHHHHHhhh---ccc---ceeeecchh
Confidence 45566666666666688999999999999999998875 8999999999865 666654331 122 333344444
Q ss_pred CCCC-----CCccEEEEcccc
Q 026036 142 PIPN-----PDWDLILASDIL 157 (244)
Q Consensus 142 ~~~~-----~~fD~I~~~~~l 157 (244)
.... .....|++|-+.
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETG
T ss_pred ccccHHhhcCCceEEEEEecc
Confidence 3321 234577776553
No 248
>PHA01634 hypothetical protein
Probab=97.59 E-value=0.00053 Score=49.04 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=53.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++++|+|+|++.|-.++.++.+++.+|++++.++... +..+.|+..+.+-++.. ....|.. .-+.||+.++
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~-k~~een~k~nnI~DK~v-~~~eW~~----~Y~~~Di~~i 98 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLR-KKWEEVCAYFNICDKAV-MKGEWNG----EYEDVDIFVM 98 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHH-HHHHHHhhhheeeecee-ecccccc----cCCCcceEEE
Confidence 357899999999999999999999899999999999854 77788888776522111 1123432 3356886554
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.011 Score=46.66 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=81.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC--CCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP--NPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~I~~ 153 (244)
.+.++.|+||--|.+..++.+.+ ...+++.|+++..+ +.+.+|+..+++..+ +..+.+|.++.. +..+|+|+.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl-~~a~~~v~~~~l~~~---i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPL-ESAIRNVKKNNLSER---IDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHH-HHHHHHHHhcCCcce---EEEeccCCccccCccCCcCEEEE
Confidence 55679999999999999998877 56799999999987 788889988888544 444455554322 336899888
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEE
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKH 233 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~ 233 (244)
+.+= ..-....+++-...++.=-++++. |... ...+.+.+.+++|+++.
T Consensus 92 AGMG-----G~lI~~ILee~~~~l~~~~rlILQ-----------------------Pn~~---~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 92 AGMG-----GTLIREILEEGKEKLKGVERLILQ-----------------------PNIH---TYELREWLSANSYEIKA 140 (226)
T ss_pred eCCc-----HHHHHHHHHHhhhhhcCcceEEEC-----------------------CCCC---HHHHHHHHHhCCceeee
Confidence 6552 233335555555555422233332 2222 36777888888887654
No 250
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.0067 Score=50.25 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=81.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHH-HHHhHHhc--CC---------------CCCcceEeee-
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDN-IAYNSTTN--GI---------------TPALPHIKHS- 136 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~-~~~~~~~~--~~---------------~~~~~~~~~~- 136 (244)
....+||-=|||.|.++..++.. +-.+-|-+.|--|+.-. --.|.-.+ .. .+++..+.+.
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 34568999999999999999877 55566667777664211 11111111 00 0111111110
Q ss_pred ---------------c-CCCCC-----CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee---cccccC
Q 026036 137 ---------------W-GDAFP-----IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH---LTKNEQ 192 (244)
Q Consensus 137 ---------------~-~~~~~-----~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~---~~~~~~ 192 (244)
| +|.+. ...+.||+|+....+ ....+..+.|+.+.++|||||.++=. .+.+.+
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI---DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d 304 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI---DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFED 304 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe---echHHHHHHHHHHHHhccCCcEEEeccceeeeccC
Confidence 0 11111 112369999987444 45678889999999999999975533 111111
Q ss_pred CCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 193 GEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
..+. .+ .. ....+-+++...++..||++++-.
T Consensus 305 ~~g~----~~------~~-siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 305 THGV----EN------EM-SIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCC----cc------cc-cccccHHHHHHHHHhcCcEEEEee
Confidence 0000 00 00 111224778888999999988654
No 251
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0016 Score=57.03 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=71.8
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccC
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLY 159 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~ 159 (244)
++|.+|||.--+...+-+.+...|+.+|+|+..+.....++...+.. .......-+.+.+++++||+|+--..+ +
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~----~~~~~~d~~~l~fedESFdiVIdkGtl-D 125 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPE----MQMVEMDMDQLVFEDESFDIVIDKGTL-D 125 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcc----eEEEEecchhccCCCcceeEEEecCcc-c
Confidence 99999999999998887766778999999998764444455422211 111222224567889999999986655 2
Q ss_pred Cc----Ch----HHHHHHHHHHHHhcCCCCceEeecc
Q 026036 160 VK----QY----SNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 160 ~~----~~----~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+. .. ......+.++++++++||+++.++.
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 21 10 1234778899999999999877644
No 252
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.36 E-value=0.00034 Score=58.12 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=78.8
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI 133 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~ 133 (244)
..+++.+-.++..++ ...++.+|||++++.|.=+.+++... ..+|++.|++..-+ ..++.|+...+... +...
T Consensus 67 ~~vQd~sS~l~~~~L---~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl-~~l~~~~~r~g~~~-v~~~ 141 (283)
T PF01189_consen 67 FYVQDESSQLVALAL---DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRL-KRLKENLKRLGVFN-VIVI 141 (283)
T ss_dssp EEEHHHHHHHHHHHH---TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHH-HHHHHHHHHTT-SS-EEEE
T ss_pred EEecccccccccccc---cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHH-HHHHHHHHhcCCce-EEEE
Confidence 445555555554443 34578899999999999998888876 47899999999876 77778887777632 1222
Q ss_pred eeecCCCCCC-CCCCccEEEEcc------cccCCc---------ChH----HHHHHHHHHHHhc----CCCCceEee
Q 026036 134 KHSWGDAFPI-PNPDWDLILASD------ILLYVK---------QYS----NLIKSLSVLLKSY----KPKDSQVGH 186 (244)
Q Consensus 134 ~~~~~~~~~~-~~~~fD~I~~~~------~l~~~~---------~~~----~l~~~l~~~~~~l----k~gG~~~~~ 186 (244)
..+.....+. ....||.|+.-. ++..+. ... .-.+.|+.+.+.+ ||||+++.+
T Consensus 142 ~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 142 NADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp ESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred eeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 1111111111 123599998721 111111 111 1236778888999 999998777
No 253
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.25 E-value=0.0027 Score=53.67 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=80.7
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CCCCCCCCccE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~ 150 (244)
...+|.+|+=.|+| .|.+++-+|+..+++|+++|.+++.+ +.+++--.. ....+.+ ..+...+.||+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd---------~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGAD---------HVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCc---------EEEEcCCchhhHHhHhhCcE
Confidence 46689999999986 55677788887789999999999875 444432111 1122211 11111224999
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee-ccc-ccCC-C--CCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH-LTK-NEQG-E--GTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~-~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
|+..-. + .++....+.|++||+++++ .+. .... . ..+......+..+..-. ..+.+++++++.
T Consensus 233 ii~tv~-------~---~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~--~~d~~e~l~f~~ 300 (339)
T COG1064 233 IIDTVG-------P---ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT--RADLEEALDFAA 300 (339)
T ss_pred EEECCC-------h---hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC--HHHHHHHHHHHH
Confidence 986311 2 6667788999999998887 221 1111 0 11111222222222222 233578888888
Q ss_pred hcCCeEEE
Q 026036 226 NAGLEVKH 233 (244)
Q Consensus 226 ~~Gf~v~~ 233 (244)
+.+...+-
T Consensus 301 ~g~Ikp~i 308 (339)
T COG1064 301 EGKIKPEI 308 (339)
T ss_pred hCCceeeE
Confidence 88876554
No 254
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00069 Score=55.24 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=75.3
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK 134 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~ 134 (244)
....||....+.+.. ..+..++|+|||.|-... ....+.+++.|++...+ ..+++. +. ..+.
T Consensus 29 r~~~Wp~v~qfl~~~------~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~-~~ak~~---~~-----~~~~ 90 (293)
T KOG1331|consen 29 RAAPWPMVRQFLDSQ------PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLL-GGAKRS---GG-----DNVC 90 (293)
T ss_pred ccCccHHHHHHHhcc------CCcceeeecccCCcccCc---CCCcceeeecchhhhhc-cccccC---CC-----ceee
Confidence 577888876655442 247899999999996431 11355799999987643 333221 11 0111
Q ss_pred eecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 135 HSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 135 ~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....-.++....+||.+++..++++.....-...+++++.+.++|||...+-
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 1111234566779999999999955555556678999999999999985544
No 255
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.22 E-value=0.00063 Score=58.69 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCC-CcceEeeecCCCCCCCCCCccEEEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITP-ALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
.+.+|||-=||||.=++-.+... ..+|++.|+|++++ +.+++|+..|+++. ++.....+....+......||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-ELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-HHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-HHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 34599999999999999888873 46899999999987 89999999999965 2222221211112223568998754
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|++ ......+..+.+.++.||.+.++
T Consensus 128 -DPf------GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 128 -DPF------GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ---S------S--HHHHHHHHHHEEEEEEEEEE
T ss_pred -CCC------CCccHhHHHHHHHhhcCCEEEEe
Confidence 665 22337778888999999988888
No 256
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.19 E-value=0.021 Score=47.33 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=46.4
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEEEcccc
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~~l 157 (244)
+|+||.||.|.++..+...+...|.++|+++.++ +..+.|...... ..+..+..... ...+|++++..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-~~~~~N~~~~~~-------~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-ETYEANFPNKLI-------EGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-HHHHHhCCCCCc-------cCccccCchhhcCCCCCEEEeCCCC
Confidence 7999999999999888776555689999999886 666666432111 11111111111 3469999997765
No 257
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0012 Score=52.23 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=58.8
Q ss_pred HHHHHHHhhccC--cccCCeEEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhc-CCCCCcceEeeecC
Q 026036 63 FSFAEWLMHHRE--WIERRRCIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTN-GITPALPHIKHSWG 138 (244)
Q Consensus 63 ~~l~~~~~~~~~--~~~~~~VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 138 (244)
..+++.+..... ..++.++||||.|.-.+= +.=...++.+.+|+|+++.++ +.++.++..| +++..+......-.
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl-~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSL-SSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHH-HHHHHHHHcCcchhhheeEEeccCc
Confidence 355666554432 235668999987755331 111233478899999999887 7788788777 55443333221111
Q ss_pred C-CC---CCCCCCccEEEEcccccCC
Q 026036 139 D-AF---PIPNPDWDLILASDILLYV 160 (244)
Q Consensus 139 ~-~~---~~~~~~fD~I~~~~~l~~~ 160 (244)
+ .+ -...+.||+++||.++|.+
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccccccceeeeEecCCCcchh
Confidence 1 11 1235689999999998443
No 258
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.15 E-value=0.0035 Score=51.61 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=53.4
Q ss_pred CeEEEeCCCCcHH-HHHHHHhC--CCeEEEEeCChHHHHHHHHHhHH-hcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 79 RRCIELGSGTGAL-AIFLRKAM--NLDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G~G~~-~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|+=||||.=-+ ++.+++.. +..|+++|++++++ +.+++-+. ..++..++..+..+..+. ......||+|+.+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~-~~a~~lv~~~~~L~~~m~f~~~d~~~~-~~dl~~~DvV~lA 199 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEAN-ELARRLVASDLGLSKRMSFITADVLDV-TYDLKEYDVVFLA 199 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHH-HHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHH-HHHHHHHhhcccccCCeEEEecchhcc-ccccccCCEEEEh
Confidence 5999999996544 56666543 56799999999986 66655444 334444444444333221 1223579999988
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
..+... .++-.+.+.++.+.++||.++++
T Consensus 200 alVg~~--~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGMD--AEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT-S------SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhcccc--cchHHHHHHHHHhhCCCCcEEEE
Confidence 777222 22444999999999999886544
No 259
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.13 E-value=0.0089 Score=53.59 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=76.1
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF 141 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (244)
+.+.....+.+..+|.|-.||+|.+.+..+... ...++|.|+++... ..++-|+-.+++.. .+....++.+
T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~-~l~~mN~~lhgi~~---~~~i~~~dtl 251 (489)
T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTY-RLAKMNLILHGIEG---DANIRHGDTL 251 (489)
T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHH-HHHHHHHHHhCCCc---cccccccccc
Confidence 333333333456699999999998876665444 25699999999876 78888998888842 1122222221
Q ss_pred ----C---CCCCCccEEEEcccccCC----------------------cChHHHHHHHHHHHHhcCCCCceEeec
Q 026036 142 ----P---IPNPDWDLILASDILLYV----------------------KQYSNLIKSLSVLLKSYKPKDSQVGHL 187 (244)
Q Consensus 142 ----~---~~~~~fD~I~~~~~l~~~----------------------~~~~~l~~~l~~~~~~lk~gG~~~~~~ 187 (244)
. ....+||.|+++.++... .....-...++++...++|||+..++.
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 1 123579999998887300 001112577899999999998777663
No 260
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0012 Score=55.32 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=67.0
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCCCC-CCCcc
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIP-NPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~fD 149 (244)
+.+...+|||+|.|.|....++-... -..++.++.|+. + ...-..+..|..+.......-+.. +.++++ ...|+
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~-l-rkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPA-L-RKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHH-H-HHHHHHHHhhcccccCCCCCCccchhccCCCccceee
Confidence 34566789999999887655543222 334777777774 2 222222233322111111111110 223332 23688
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
+++..+-+-.......+...++.+-.++.|||.++++..+.
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 88888777555555567789999999999999999984443
No 261
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.06 E-value=0.0016 Score=47.91 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=53.2
Q ss_pred eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCC-CCccEEEEcccccCCc-------ChHHHHHHHHHH
Q 026036 102 DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPN-PDWDLILASDILLYVK-------QYSNLIKSLSVL 173 (244)
Q Consensus 102 ~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fD~I~~~~~l~~~~-------~~~~l~~~l~~~ 173 (244)
+|++.|+.++++ ++.+++....+...++..+.-.-.+...... ++.|+++-|--. -+. ....-..+++.+
T Consensus 1 kVyaFDIQ~~Ai-~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY-LPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAI-ENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY-LPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHH-HHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB--CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHH-HHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc-CCCCCCCCCcCcHHHHHHHHHH
Confidence 689999999998 8888888877775555544333322222233 379998887653 322 223445778888
Q ss_pred HHhcCCCCceEeeccc
Q 026036 174 LKSYKPKDSQVGHLTK 189 (244)
Q Consensus 174 ~~~lk~gG~~~~~~~~ 189 (244)
.+.|+|||.+.+++|.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999998887443
No 262
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.0001 Score=54.44 Aligned_cols=92 Identities=13% Similarity=-0.029 Sum_probs=59.2
Q ss_pred CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCC---CCCeEEEeeeeccCccch
Q 026036 141 FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGL---PWPAFLMSWRRRIGKEDE 217 (244)
Q Consensus 141 ~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 217 (244)
..+.+++.|+|++.+++ .|........+++++++.|||||.+-+.++....-...... ....+...|-.+....+.
T Consensus 41 ~~F~dns~d~iyaeHvl-EHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~ 119 (185)
T COG4627 41 SMFEDNSVDAIYAEHVL-EHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM 119 (185)
T ss_pred ccCCCcchHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence 45667899999999998 77888888999999999999999999997766433211100 000011101111111234
Q ss_pred hhHHHHHhhcCCeEEE
Q 026036 218 TIFFTSCENAGLEVKH 233 (244)
Q Consensus 218 ~~~~~~l~~~Gf~v~~ 233 (244)
+.+++...++||+++-
T Consensus 120 r~m~n~~m~~~~~~kl 135 (185)
T COG4627 120 RMMFNGFMDAGFVVKL 135 (185)
T ss_pred HHHHHHHHhhhheehh
Confidence 5566777788887763
No 263
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.04 E-value=0.0066 Score=51.34 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=66.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH---hcCCCCCcceEeeecCCCCC---CCCCCcc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST---TNGITPALPHIKHSWGDAFP---IPNPDWD 149 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~fD 149 (244)
.-.+||=+|.|-|.-...+.+.. -.+|+.+|++|+|+ +.++++.. .|+-+..-+.++.-..|... .....||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~mi-ela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMI-ELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHH-HHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 34589999999999998887765 56899999999997 77764432 22222122233333333332 2345899
Q ss_pred EEEEcccccCCcChHHH-----HHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNL-----IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l-----~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||. |.. .+. .+.+ ...-.-+.+.|+++|.+++.
T Consensus 368 ~vIV-Dl~-DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 368 VVIV-DLP-DPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEE-eCC-CCC-CcchhhhhhHHHHHHHHHhcCcCceEEEe
Confidence 9987 222 211 1111 24556678899999987776
No 264
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.97 E-value=8.4e-05 Score=52.19 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=35.2
Q ss_pred EEeCCCCcHHHHHHHHhC---C-CeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEEEccc
Q 026036 82 IELGSGTGALAIFLRKAM---N-LDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLILASDI 156 (244)
Q Consensus 82 LdlG~G~G~~~~~~a~~~---~-~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~~~ 156 (244)
||+|+..|..+..+++.. + .+++++|..+. . +..++.++..+...++..+..+..+.++ ...+++|+|+. |.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~-~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i-Dg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D-EQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI-DG 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE-ES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c-cccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE-CC
Confidence 699999998887766543 2 37999999984 1 2222222222332233333222211111 11468999887 44
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
- | ..+.....++.+.+.++|||.+++
T Consensus 78 ~-H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 D-H--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C-C--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 3 1 235566788889999999997665
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.92 E-value=0.00088 Score=58.79 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=67.0
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccccc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILL 158 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~ 158 (244)
..|+|..+|.|.++.++... .|+....-+.. ..+.-.-+..-++ + -+-.+|.+.++.-+.+||+|.++.++=
T Consensus 367 RNVMDMnAg~GGFAAAL~~~---~VWVMNVVP~~-~~ntL~vIydRGL---I-G~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD---PVWVMNVVPVS-GPNTLPVIYDRGL---I-GVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeecccccHHHHHhccC---CceEEEecccC-CCCcchhhhhccc---c-hhccchhhccCCCCcchhheehhhhhh
Confidence 47999999999998877543 24444433211 0000011112222 1 235689999998889999999988873
Q ss_pred CCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 159 YVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 159 ~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.......+...+-++-|+|+|+|.+++-
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEe
Confidence 3344567789999999999999987763
No 266
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0082 Score=50.88 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
..+|+|-=||||+=++-.+...+. +|++-|+|++++ +.+++|+..|.... ...+.-|....+......||+|= .|+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Av-elik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~ID-iDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAV-ELIKENVRLNSGED-AEVINKDANALLHELHRAFDVID-IDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHH-HHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEe-cCC
Confidence 679999999999999988877755 899999999997 89999999984321 12222111111222236799764 466
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ - + ....+....+..+.||.+.++
T Consensus 130 F-G--S---PaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 130 F-G--S---PAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred C-C--C---CchHHHHHHHHhhcCCEEEEE
Confidence 5 2 2 225566677778889988777
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.54 E-value=0.0061 Score=51.09 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=73.6
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHH------HHHHHhHHhcCCCC-CcceEeeecCCCCCCCC
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIE------DNIAYNSTTNGITP-ALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (244)
....+|+-|.|=-.|||.+.+.+|. +|+.|.|+||+-.++. ...+.|.+..+.+. -+..+..|..++.-...
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred hccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 4567899999999999999888875 5899999999987653 12344544444322 13334444443322224
Q ss_pred CCccEEEEcccccCCc------------------------------ChH-HHHHHHHHHHHhcCCCCceEeecc
Q 026036 146 PDWDLILASDILLYVK------------------------------QYS-NLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~------------------------------~~~-~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
..||.|+|- +-|-.. +.. -+.+.|.-.++.|..||++++-.+
T Consensus 283 ~~fDaIvcD-PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 283 LKFDAIVCD-PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred ceeeEEEeC-CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 479999993 334210 111 123566777899999999988855
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.43 E-value=0.018 Score=49.68 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccE
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~ 150 (244)
.+-+|.||||++|-.|.=+.++|... ...|++.|.+..-+ ..++.|+...++.+.+ ....+..+. .....++||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~-~~l~~n~~rlGv~nti-v~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRL-KSLKANLHRLGVTNTI-VSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHH-HHHHHHHHHhCCCceE-EEccCcccccccccCcccce
Confidence 45689999999998887666665554 56799999999876 7788888887764322 111221111 0111237998
Q ss_pred EEE----cc--cccCCc------------ChHHH-HHHHHHHHHhcCCCCceEee
Q 026036 151 ILA----SD--ILLYVK------------QYSNL-IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~----~~--~l~~~~------------~~~~l-~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. +. +++... ....+ .+.|.....++++||.++.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 885 22 222111 11112 25667778899999988877
No 269
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=96.38 E-value=0.0042 Score=50.72 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=40.5
Q ss_pred CCCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHh
Q 026036 52 QLNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKA 98 (244)
Q Consensus 52 ~~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~ 98 (244)
..+|..+|.++..|.+++.+++...++.++.++|||.+......++.
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~ 111 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARV 111 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhc
Confidence 34589999999999999999998888999999999999988555543
No 270
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.33 E-value=0.0061 Score=45.62 Aligned_cols=103 Identities=12% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceE-eeecCCCCCCCCCCccEEEEccc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHI-KHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
|++++=+|+..=.+=..+.+.++++|..++.++-.+.+-.+.. + ..+ ..+.........++||.+.|..+
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr-----~----ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR-----L----SSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc-----c----ccccHHHHHHHHHHhhccchhhheech
Confidence 5677778776444444444555778999998762221111111 1 000 00000111112457999988877
Q ss_pred ccCCc---------ChHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 157 LLYVK---------QYSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 157 l~~~~---------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
+ .|. +..--.+.+.++.++|||||.+++.++-.
T Consensus 73 i-Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 73 I-EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred h-ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 7 331 11122377888999999999999996655
No 271
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.25 E-value=0.035 Score=44.84 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=47.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCccEEEEc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~ 154 (244)
...+|+|||||.=-+++...... +..++|.|++..++ +.+.......+.. ....+.|.+.. +....|+.+..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~v-e~l~~~l~~l~~~-----~~~~v~Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLV-EFLNAFLAVLGVP-----HDARVRDLLSDPPKEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHH-HHHHHHHHHTT-C-----EEEEEE-TTTSHTTSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHH-HHHHHHHHhhCCC-----cceeEeeeeccCCCCCcchhhHH
Confidence 46799999999998887765443 57899999999876 7777766655552 22233344433 34568999885
Q ss_pred ccc
Q 026036 155 DIL 157 (244)
Q Consensus 155 ~~l 157 (244)
=++
T Consensus 179 K~l 181 (251)
T PF07091_consen 179 KTL 181 (251)
T ss_dssp T-H
T ss_pred HHH
Confidence 554
No 272
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.23 E-value=0.055 Score=45.25 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=64.3
Q ss_pred hhccCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-e-cC---CCCC
Q 026036 70 MHHREWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-S-WG---DAFP 142 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~---~~~~ 142 (244)
........|.+||=+|+| .|+++...|+.. ..+|+.+|+++..+ +.+++ ...... ..... . .. +...
T Consensus 162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~-~Ga~~~----~~~~~~~~~~~~~~~v~ 235 (354)
T KOG0024|consen 162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKK-FGATVT----DPSSHKSSPQELAELVE 235 (354)
T ss_pred hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHH-hCCeEE----eeccccccHHHHHHHHH
Confidence 334567789999999999 788888887776 67899999999877 66665 221111 00000 0 00 0000
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.....+|+.+-..-+ + .+++.....++.||.+++.
T Consensus 236 ~~~g~~~~d~~~dCsG~------~---~~~~aai~a~r~gGt~vlv 272 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGA------E---VTIRAAIKATRSGGTVVLV 272 (354)
T ss_pred hhccccCCCeEEEccCc------h---HHHHHHHHHhccCCEEEEe
Confidence 112348887753332 2 6677778899999997766
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.20 E-value=0.022 Score=53.12 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC-------------CCeEEEEeCCh---HHHHHHHH----------HhHHh-----cCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM-------------NLDITTSDYND---QEIEDNIA----------YNSTT-----NGI 126 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~-------------~~~v~~~D~~~---~~l~~~~~----------~~~~~-----~~~ 126 (244)
.-+|+|+|-|+|+..+.+.+.. ..+++.+|..+ +.+.+..+ ..... .++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999877665322 23789999754 22212111 10000 011
Q ss_pred ------CCCcceEeeecCCC---CCCCCCCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCC
Q 026036 127 ------TPALPHIKHSWGDA---FPIPNPDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEG 195 (244)
Q Consensus 127 ------~~~~~~~~~~~~~~---~~~~~~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~ 195 (244)
.+++ ...+-++|. ++.....+|+++. |.+ .....+++ ...++.++++++|||+++--
T Consensus 138 ~~~~~~~~~~-~l~l~~gd~~~~~~~~~~~~d~~~l-D~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~--------- 205 (662)
T PRK01747 138 HRLLFDDGRV-TLDLWFGDANELLPQLDARADAWFL-DGF-APAKNPDMWSPNLFNALARLARPGATLATF--------- 205 (662)
T ss_pred eEEEecCCcE-EEEEEecCHHHHHHhccccccEEEe-CCC-CCccChhhccHHHHHHHHHHhCCCCEEEEe---------
Confidence 0000 223444543 2222346898886 554 44333433 28899999999999965421
Q ss_pred CCCCCCCeEEEeeeeccCccchhhHHHHHhhcCCeEEEec
Q 026036 196 TEGLPWPAFLMSWRRRIGKEDETIFFTSCENAGLEVKHLG 235 (244)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 235 (244)
.. ...+..-|.++||+|++..
T Consensus 206 -----------------t~--a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 206 -----------------TS--AGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred -----------------eh--HHHHHHHHHHcCCeeeecC
Confidence 11 2566788999999998663
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.048 Score=46.33 Aligned_cols=109 Identities=12% Similarity=0.081 Sum_probs=60.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC-C----CeEEEEeCChHHHHHHHHHhHH-hcCCCCCcceEeeecC--CCC----
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM-N----LDITTSDYNDQEIEDNIAYNST-TNGITPALPHIKHSWG--DAF---- 141 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~-~----~~v~~~D~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~---- 141 (244)
.+.+|.+|||+++-.|.=+..+.+.. . ..|++-|.+..-+ ..+..... .+.. .+.....+.. ...
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~-~~L~~q~~~l~~~--~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRL-NMLVHQLKRLPSP--NLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHH-HHHHHHHhccCCc--ceeeecccceecccccccc
Confidence 45689999999999987776555543 2 2799999988643 22222221 1111 1111111100 000
Q ss_pred --CCCCCCccEEEEcccccCC--------------------cChHH-HHHHHHHHHHhcCCCCceEee
Q 026036 142 --PIPNPDWDLILASDILLYV--------------------KQYSN-LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 142 --~~~~~~fD~I~~~~~l~~~--------------------~~~~~-l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.....||-|++ ||-..+ ...+. ..+.+++-.++||+||+++.+
T Consensus 229 ~~~~~~~~fDrVLv-DVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLV-DVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred CchhhhhhcceeEE-ecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 112236888887 322111 11222 236788889999999998877
No 275
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.15 E-value=0.076 Score=47.75 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=62.2
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--------------
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-------------- 139 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 139 (244)
..++.+|+=+||| .|..++..|+..+++|+++|.+++.+ +.++. .+.. .+..+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rl-e~aes----lGA~----~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVA-EQVES----MGAE----FLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH----cCCe----EEEeccccccccccchhhhcch
Confidence 3478999999999 67788888888888999999999765 44433 1220 11111100
Q ss_pred C--------CCCCCCCccEEEEcccccCCcChHHHHHH-HHHHHHhcCCCCceEee
Q 026036 140 A--------FPIPNPDWDLILASDILLYVKQYSNLIKS-LSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~--------~~~~~~~fD~I~~~~~l~~~~~~~~l~~~-l~~~~~~lk~gG~~~~~ 186 (244)
. +......+|+|+..-.. .....+ .+ .++..+.+||||+++..
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~-pg~~aP---~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALI-PGKPAP---KLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCC-CcccCc---chHHHHHHHhcCCCCEEEEE
Confidence 0 00001358999986554 111122 44 37888999999987766
No 276
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.12 E-value=0.0037 Score=53.71 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=58.6
Q ss_pred CCcceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCC-cc
Q 026036 53 LNANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPA-LP 131 (244)
Q Consensus 53 ~~~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~-~~ 131 (244)
..|...|.+-... +...-..-..+|..|.|+.||.|-+++.++++ +++|++.|.+++++ +.++.|+..|.+... +.
T Consensus 226 DfskVYWnsRL~~-Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesi-k~Lk~ni~lNkv~~~~ie 302 (495)
T KOG2078|consen 226 DFSKVYWNSRLSH-EHERLSGLFKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESI-KWLKANIKLNKVDPSAIE 302 (495)
T ss_pred ecceEEeeccchh-HHHHHhhccCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHH-HHHHHhccccccchhhee
Confidence 3477789853322 22111123457889999999999999999988 59999999999998 999999998887543 44
Q ss_pred eEee
Q 026036 132 HIKH 135 (244)
Q Consensus 132 ~~~~ 135 (244)
.+.+
T Consensus 303 i~Nm 306 (495)
T KOG2078|consen 303 IFNM 306 (495)
T ss_pred eecc
Confidence 3333
No 277
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.11 E-value=0.11 Score=40.43 Aligned_cols=140 Identities=15% Similarity=0.151 Sum_probs=72.1
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhCCC--eEEEEeCChHH---------HHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAMNL--DITTSDYNDQE---------IEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~~~--~v~~~D~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+.+|.+|+|+=-|.|..+..++...+. .|++.-..+.. +....++....|.- .+.-.... +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e-----~~~~~~~A-~~ 118 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE-----VIGKPLVA-LG 118 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh-----hhCCcccc-cC
Confidence 3568999999999999999888776543 45554433320 11111111111111 11000000 01
Q ss_pred CCCCCccEEEE--------cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCc
Q 026036 143 IPNPDWDLILA--------SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGK 214 (244)
Q Consensus 143 ~~~~~fD~I~~--------~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (244)
..+..|++.. +-.+ + .....+..+++++.|||||.+.+............ .-. ...+.
T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i-~---~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~-----dt~--~~~ri-- 184 (238)
T COG4798 119 -APQKLDLVPTAQNYHDMHNKNI-H---PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS-----DTI--TLHRI-- 184 (238)
T ss_pred -CCCcccccccchhhhhhhcccc-C---cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh-----hhh--hhccc--
Confidence 1223444433 2222 2 23455888999999999999888743333221110 000 01111
Q ss_pred cchhhHHHHHhhcCCeEEEe
Q 026036 215 EDETIFFTSCENAGLEVKHL 234 (244)
Q Consensus 215 ~~~~~~~~~l~~~Gf~v~~~ 234 (244)
+........+++||..+--
T Consensus 185 -~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 185 -DPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred -ChHHHHHHHHhhcceeeee
Confidence 2356778899999987643
No 278
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.08 E-value=0.027 Score=45.08 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=70.3
Q ss_pred cceeechH-HHHHHHHh---hccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHH---HHHHHHHhHHhcC
Q 026036 55 ANFLWPGT-FSFAEWLM---HHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQE---IEDNIAYNSTTNG 125 (244)
Q Consensus 55 ~~~~w~~~-~~l~~~~~---~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~---l~~~~~~~~~~~~ 125 (244)
...+|..- -.||.-+. ++.++.+|.+||=||+++|..-.+.+.-.+ .-|++++.|+.. |...+++
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------ 203 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------ 203 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------
Confidence 56678663 24555443 345678999999999999987777765543 349999998742 3222221
Q ss_pred CCCCcceEeeecCCCCCCCCCCcc-EEEEcccccCCcChHHHHHHH-HHHHHhcCCCCceEeecccc
Q 026036 126 ITPALPHIKHSWGDAFPIPNPDWD-LILASDILLYVKQYSNLIKSL-SVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~fD-~I~~~~~l~~~~~~~~l~~~l-~~~~~~lk~gG~~~~~~~~~ 190 (244)
.++.++.++ |. .. ..+|- +|=|.|++|.....++..+.+ -+....||+||.|++++...
T Consensus 204 RtNiiPIiE----DA-rh-P~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 204 RTNIIPIIE----DA-RH-PAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred cCCceeeec----cC-CC-chheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 112223331 11 11 11121 222444444433344444433 46678899999999884433
No 279
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.07 E-value=0.0095 Score=49.04 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=66.5
Q ss_pred ceeechHHHHHHHH--hhc----cCcccCCeEEEeCCCCcHHHH-HHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 56 NFLWPGTFSFAEWL--MHH----REWIERRRCIELGSGTGALAI-FLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 56 ~~~w~~~~~l~~~~--~~~----~~~~~~~~VLdlG~G~G~~~~-~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
.+.|+.+..|-.+= .+. .-...+..|.|+-+|.|++++ ++...++..|++.|.++..+ +.+++|+..|+...
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-EaLrR~~~~N~V~~ 245 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-EALRRNAEANNVMD 245 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-HHHHHHHHhcchHH
Confidence 67888887776551 111 112356789999999999998 67677788899999999987 89999999998755
Q ss_pred CcceEeeecCCCCCCCCCCccEEEE
Q 026036 129 ALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
++..+..+.. .+.+....|-|..
T Consensus 246 r~~i~~gd~R--~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 246 RCRITEGDNR--NPKPRLRADRVNL 268 (351)
T ss_pred HHHhhhcccc--ccCccccchheee
Confidence 5444433322 2334456676655
No 280
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.0052 Score=53.84 Aligned_cols=102 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEE
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I 151 (244)
++.+|||-=|+||+-++-.|+.. -.+|++.|.++.++ +..++|+..|+....+.....+.... -+.....||+|
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV-~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAV-TSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHH-HHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 56799999999999999888776 45799999999987 88999999997754433332222111 11224689987
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
=. |++ -. . ...|..+.+.++.||.+.++
T Consensus 188 DL-DPy-Gs--~---s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 188 DL-DPY-GS--P---SPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ec-CCC-CC--c---cHHHHHHHHHhhcCCEEEEE
Confidence 54 664 22 2 26677788888899988887
No 281
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.86 E-value=0.12 Score=44.05 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=55.0
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+||=.||| .|..++.+++..+. +|+++|.+++.+ +.+++. +....+.....+..+.. ...+.+|+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~-~~a~~l----Ga~~vi~~~~~~~~~~~-~~~g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSL-SLAREM----GADKLVNPQNDDLDHYK-AEKGYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHH-HHHHHc----CCcEEecCCcccHHHHh-ccCCCCCEE
Confidence 34478899988874 45555666666666 699999998765 444331 22100000000000101 112358988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-. . ..+ .+++...+.+++||++++.
T Consensus 240 id~--~----G~~---~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 240 FEV--S----GHP---SSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEC--C----CCH---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 112 4566678889999998776
No 282
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.84 E-value=0.036 Score=45.26 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CCCccEEE
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NPDWDLIL 152 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fD~I~ 152 (244)
...|++|+=+| ---+.+++++..+ ..+|..+|+++..+ ....+-+...+. +++..+.++..+++|.. ..+||+.+
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli-~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLI-KFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHH-HHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeee
Confidence 45788999998 6667777776655 78899999999854 777776666666 33566777777776643 45899876
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCC
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPK 180 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~g 180 (244)
. |+. +....+...+.+=...||.-
T Consensus 227 T-DPp---eTi~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 T-DPP---ETIKALKLFLGRGIATLKGE 250 (354)
T ss_pred c-Cch---hhHHHHHHHHhccHHHhcCC
Confidence 5 554 33455556665555666654
No 283
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=95.83 E-value=0.13 Score=43.57 Aligned_cols=92 Identities=11% Similarity=-0.050 Sum_probs=56.6
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....+|.+||=.|+| .|..+..+|+..+.+|++++.+++.. +.+++ .+... .+ +..+. ..+.+|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~-~~a~~----~Ga~~---vi--~~~~~---~~~~~d~~ 227 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR-RLALA----LGAAS---AG--GAYDT---PPEPLDAA 227 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHH----hCCce---ec--ccccc---CcccceEE
Confidence 345678899999974 44555666777788899999988654 44433 22210 11 10011 12357877
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-.+.. . .++....+.+++||++++.
T Consensus 228 i~~~~~------~---~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 228 ILFAPA------G---GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EECCCc------H---HHHHHHHHhhCCCcEEEEE
Confidence 654432 2 4567788899999998765
No 284
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.79 E-value=0.11 Score=40.98 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=48.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-----CCC--
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-----PIP-- 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-- 144 (244)
+.+.|+|+|.=.|.-++..|... .++|+++|++.... .+.......+..++..++.+..+.. ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~---~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH---NRKAIESHPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-----S-GGGG----TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh---chHHHhhccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 45799999998887777665432 57899999965322 1112232233344555554443321 111
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..... +++-|.-+.+ ....+.|+.....+++|+.+++.
T Consensus 109 ~~~~v-lVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 109 PPHPV-LVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp --SSE-EEEESS-------SSHHHHHHHHHHT--TT-EEEET
T ss_pred cCCce-EEEECCCccH---HHHHHHHHHhCccCCCCCEEEEE
Confidence 12233 4445665333 33448888899999999977765
No 285
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.084 Score=39.07 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=39.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITP 128 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~ 128 (244)
.+..+.+|||+|-|.+-+.+++.+....+|+++++=.+ ...+..+...+...
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLV-aysrl~a~R~g~~k 122 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLV-AYSRLHAWRAGCAK 122 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHH-HHHHHHHHHHhccc
Confidence 34459999999999999999888667899999999643 55555555555533
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.71 E-value=0.057 Score=43.34 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=39.3
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH---HHHHHHHhHHhcCC-CCCcceEeeecCCCC---CCCCCCccEE
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE---IEDNIAYNSTTNGI-TPALPHIKHSWGDAF---PIPNPDWDLI 151 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~---l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~fD~I 151 (244)
.+|||.-+|-|.-++.++.. +++|++++-|+-. +.+.+++....... ......+++..++.. ...+.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 38999999999999998865 7899999999853 22222222111111 011234555555543 3346799999
Q ss_pred EEcccccCC
Q 026036 152 LASDILLYV 160 (244)
Q Consensus 152 ~~~~~l~~~ 160 (244)
+. |++|.+
T Consensus 156 Y~-DPMFp~ 163 (234)
T PF04445_consen 156 YF-DPMFPE 163 (234)
T ss_dssp EE---S---
T ss_pred EE-CCCCCC
Confidence 98 555454
No 287
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.60 E-value=0.052 Score=42.73 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHH
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+++++.+-+. ...-..+-++.|=+||+|.+.-.+.... -..|.+.|++++++ +.+++|+.
T Consensus 36 AsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL-~lA~kNL~ 98 (246)
T PF11599_consen 36 ASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDAL-ELARKNLS 98 (246)
T ss_dssp HHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHH-HHHHHHHH
T ss_pred HHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHH-HHHHHhhh
Confidence 4444444332 2322345699999999998875554443 34699999999987 88888875
No 288
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.59 E-value=0.033 Score=45.46 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=29.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~ 120 (244)
...+|+|+|+|+|.++.-+.... ..+++.+|.|+... +..++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~-~~Q~~~ 69 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR-ERQKER 69 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH-HHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH-HHHHHH
Confidence 34699999999999987765533 35799999999742 444443
No 289
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.42 E-value=0.048 Score=46.50 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=39.1
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
.|.+.+.+......-..|+|+|+|-|.++.+++..++..|.++|-|...
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 140 RLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRL 188 (476)
T ss_pred HHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHH
Confidence 5555555544444556899999999999999998889999999999754
No 290
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.078 Score=45.08 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcc---CcccCCeEEEeCCCCcHHHHHHHHhC---------CCeEEEEeCChHHHHHHHHHh
Q 026036 62 TFSFAEWLMHHR---EWIERRRCIELGSGTGALAIFLRKAM---------NLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 62 ~~~l~~~~~~~~---~~~~~~~VLdlG~G~G~~~~~~a~~~---------~~~v~~~D~~~~~l~~~~~~~ 120 (244)
+..++.|+.+.- .......++|+|+|.|.++.-+.+.. ..++..++.|++ +.+..+.+
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~-L~~~Qk~~ 128 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE-LRARQKET 128 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH-HHHHHHHH
Confidence 556777766542 22234589999999999986654432 678999999997 42333333
No 291
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.41 E-value=0.062 Score=42.62 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=38.4
Q ss_pred eechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHH
Q 026036 58 LWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNI 117 (244)
Q Consensus 58 ~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~ 117 (244)
.-+-...|.+.+..... .+|..|||--||+|..+.++.+ .+.+.+|+|++++.+ +.+
T Consensus 173 ~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~-~~a 229 (231)
T PF01555_consen 173 PTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYC-EIA 229 (231)
T ss_dssp TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHH-HHH
T ss_pred eecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHH-HHh
Confidence 33445566666655432 4789999999999999987765 488999999999865 544
No 292
>PRK11524 putative methyltransferase; Provisional
Probab=95.39 E-value=0.075 Score=44.25 Aligned_cols=57 Identities=5% Similarity=-0.064 Sum_probs=42.0
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
..|.+.+..... .+|..|||--||+|..++++.+ .+.+.+|+|++++.+ +.+++++.
T Consensus 195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~-~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYI-KMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHH-HHHHHHHH
Confidence 445544443322 4889999999999999987755 499999999999865 66655543
No 293
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=95.25 E-value=0.69 Score=40.13 Aligned_cols=131 Identities=20% Similarity=0.162 Sum_probs=79.9
Q ss_pred ceEEEEecccCCC-CcceeechHHHHHHHHhhccCcc-cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 41 MELVIREFAFHQL-NANFLWPGTFSFAEWLMHHREWI-ERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~~w~~~~~l~~~~~~~~~~~-~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
..+.++-++.... ....-|+++- +|++++.... ...+||=|+=.-|.++..++.. ... ..+|.- .....++
T Consensus 9 ~~~~l~r~p~~~~~~~l~awdaad---e~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~-~~~-~~~ds~--~~~~~~~ 81 (378)
T PRK15001 9 RSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEH-KPY-SIGDSY--ISELATR 81 (378)
T ss_pred ceeEEEECCCCCCcCcccccccHH---HHHHHHHhhcccCCCEEEEcCchhHHHHHHHhC-CCC-eeehHH--HHHHHHH
Confidence 3455554443222 2377888875 3344332221 1138999999999999988753 222 223432 2235667
Q ss_pred HhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 119 YNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|+..|+++.. .+. +-+..+...+.+|+|+. +.+.+...+...+..+.+.+.||+.++..
T Consensus 82 ~n~~~n~~~~~--~~~--~~~~~~~~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 82 ENLRLNGIDES--SVK--FLDSTADYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred HHHHHcCCCcc--cce--eecccccccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 78888887432 111 11222233456999987 45677778888999999999999986654
No 294
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.26 Score=41.95 Aligned_cols=128 Identities=13% Similarity=0.074 Sum_probs=71.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCC-CC-CccEEEEcc
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIP-NP-DWDLILASD 155 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~fD~I~~~~ 155 (244)
..+++||-||.|.+.+.+...+-.-+.++|+++.++ +..+.|-.... .+..+..+..... .. .+|++++..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~-~ty~~n~~~~~------~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAV-ATYKANFPHGD------IILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHH-HHHHHhCCCCc------eeechHhhcChhhccccCCCEEEeCC
Confidence 358999999999999888776545599999999876 55555533211 1111111111101 11 689999977
Q ss_pred cccCCc-----------ChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 156 ILLYVK-----------QYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 156 ~l~~~~-----------~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
+. ... ....|.--+.++...++| .+++. +|...+ ..+ . ....+.+.+.|
T Consensus 76 PC-Q~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~-----ENV~gl--------~~~---~-~~~~~~i~~~L 135 (328)
T COG0270 76 PC-QDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVL-----ENVKGL--------LSS---K-GQTFDEIKKEL 135 (328)
T ss_pred CC-cchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEE-----ecCchH--------Hhc---C-chHHHHHHHHH
Confidence 65 221 111233444555566667 33333 111111 101 1 12357888899
Q ss_pred hhcCCeEE
Q 026036 225 ENAGLEVK 232 (244)
Q Consensus 225 ~~~Gf~v~ 232 (244)
++.|+.+.
T Consensus 136 ~~~GY~~~ 143 (328)
T COG0270 136 EELGYGVE 143 (328)
T ss_pred HHcCCcch
Confidence 99999733
No 295
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.08 E-value=0.15 Score=43.75 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=59.3
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-CCCCCC-CCccEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-AFPIPN-PDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~fD~I 151 (244)
.++.+|+=+||| .|+++..+++.. ..+|+++|.+++-+ +.+++............. +... ...... ..+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g~~~~~~~~~~---~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL-ELAKEAGGADVVVNPSED---DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-HHHHHhCCCeEeecCccc---cHHHHHHHHhCCCCCCEE
Confidence 344499999999 688887777766 57899999999876 555542211101000000 0000 001111 268988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+=.-- .+ .++..+.+.++|||++.+.
T Consensus 243 ie~~G------~~---~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAVG------SP---PALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECCC------CH---HHHHHHHHHhcCCCEEEEE
Confidence 75322 22 5778889999999998877
No 296
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.97 E-value=0.39 Score=40.29 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=50.5
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
++.+||=+||| .|.+++.+++..+.+ |.++|.+++.+ +.+... .. + +..+. ....+|+|+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl-~~a~~~----~~------i--~~~~~---~~~g~Dvvid- 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR-DGATGY----EV------L--DPEKD---PRRDYRAIYD- 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH-Hhhhhc----cc------c--Chhhc---cCCCCCEEEE-
Confidence 57789988875 566666667666665 77788877554 332211 11 1 00010 1235898874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ..+ .++..+.+.++++|++++.
T Consensus 207 -~~----G~~---~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 207 -AS----GDP---SLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred -CC----CCH---HHHHHHHHhhhcCcEEEEE
Confidence 22 112 4566778899999998765
No 297
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.86 E-value=0.21 Score=40.92 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=57.5
Q ss_pred CeEEEeCCCC---cHHHHHHHHh--CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC---C------CC
Q 026036 79 RRCIELGSGT---GALAIFLRKA--MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF---P------IP 144 (244)
Q Consensus 79 ~~VLdlG~G~---G~~~~~~a~~--~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~ 144 (244)
...||||||. |..-- .|+. -.++|+-+|.++-.+ ...+.-+..+.- .....+..+..++. . ..
T Consensus 70 rQFLDlGsGlPT~~nvHe-vAq~~~P~aRVVYVD~DPvv~-ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHE-VAQRVAPDARVVYVDNDPVVL-AHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHH-HHHHH-TT-EEEEEESSHHHH-HCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhH-HHHhhCCCceEEEECCCchHH-HHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 3799999993 33332 3332 278999999999654 555544333321 12344544444321 1 11
Q ss_pred C-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecc
Q 026036 145 N-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLT 188 (244)
Q Consensus 145 ~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~ 188 (244)
+ .+.=.+++..++++....++...+++.+...|.||..++++..
T Consensus 147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 1 2233577788886666656778999999999999998888833
No 298
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.76 E-value=0.1 Score=40.78 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=33.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+.-.+.|||||-|.+.+.++.++ ..-+.|.+|-... .+..+..+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KV-sdYVk~RI~ 105 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKV-SDYVKERIQ 105 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHH-HHHHHHHHH
Confidence 33579999999999999998887 4459999997653 355555443
No 299
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.64 E-value=0.067 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=26.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 77 ERRRCIELGSGTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
+...-+|||||+|++.-.+... +..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 3458999999999999877665 66778888754
No 300
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.62 E-value=1.1 Score=34.12 Aligned_cols=128 Identities=15% Similarity=0.090 Sum_probs=67.4
Q ss_pred CCCCcHHHHHHHHhC--CCeEEEEeCChHH-HHHHH---HHhHHhcCCCCCcceEeeecCCC---CCCCCCCccEEEEcc
Q 026036 85 GSGTGALAIFLRKAM--NLDITTSDYNDQE-IEDNI---AYNSTTNGITPALPHIKHSWGDA---FPIPNPDWDLILASD 155 (244)
Q Consensus 85 G~G~G~~~~~~a~~~--~~~v~~~D~~~~~-l~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~fD~I~~~~ 155 (244)
|=|.=.++..+++.. +.++++|-++.+. +.+.. ..|+......+..-...++.... ......+||.|+-+.
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 334445566666664 5578888886542 21221 13333221111111112222221 122356899999988
Q ss_pred cccC------C----cChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 156 ILLY------V----KQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 156 ~l~~------~----~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
+.-- . ....-+...++.+.++|+++|.+.++.-. ..| +. . =.+.++++
T Consensus 84 PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~----------~~p-----y~-~------W~i~~lA~ 141 (166)
T PF10354_consen 84 PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD----------GQP-----YD-S------WNIEELAA 141 (166)
T ss_pred CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC----------CCC-----Cc-c------ccHHHHHH
Confidence 8522 0 01123457778888999999988877211 111 11 1 13357888
Q ss_pred hcCCeEEEe
Q 026036 226 NAGLEVKHL 234 (244)
Q Consensus 226 ~~Gf~v~~~ 234 (244)
.+||.+...
T Consensus 142 ~~gl~l~~~ 150 (166)
T PF10354_consen 142 EAGLVLVRK 150 (166)
T ss_pred hcCCEEEEE
Confidence 899987765
No 301
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.60 E-value=0.18 Score=42.34 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=43.6
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
+|.+-+++.....++..++|--+|.|..+..++... ..+|+|+|.++.++ +.+++..
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al-~~ak~~L 64 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAI-AFAKERL 64 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHH
Confidence 344444445555678899999999999999998775 58899999999987 6665544
No 302
>PRK13699 putative methylase; Provisional
Probab=94.53 E-value=0.21 Score=40.16 Aligned_cols=57 Identities=7% Similarity=-0.058 Sum_probs=40.8
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
..|.+.++.... .+|..|||--||+|..++++.+ .+.+.+|+|++++.. +.+.+++.
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~-~~~~~r~~ 206 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYH-RAGQQRLA 206 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHH-HHHHHHHH
Confidence 344455443322 3788999999999999887765 488999999999865 55544443
No 303
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.38 E-value=0.39 Score=41.67 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=24.8
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC----------------CCeEEEEeCChHH
Q 026036 78 RRRCIELGSGTGALAIFLRKAM----------------NLDITTSDYNDQE 112 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~----------------~~~v~~~D~~~~~ 112 (244)
..+|+|+|||+|..++.+.... ..+|...|+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ND 114 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSND 114 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCC
Confidence 4589999999997775543211 3578899987653
No 304
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.33 E-value=0.25 Score=42.11 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=55.6
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC----------C-------CeEEEEeCChHHH---HHHHHHhHHhcCCCCCcceEeee
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM----------N-------LDITTSDYNDQEI---EDNIAYNSTTNGITPALPHIKHS 136 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~----------~-------~~v~~~D~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~ 136 (244)
..-+|.|+||.+|..++.+.... . -+|+..|+..+.. -..+..+.....-...+ .+...
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~-f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNY-FVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSE-EEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceE-EEEec
Confidence 44699999999998887654321 1 3799999977532 11111111000000111 12221
Q ss_pred cCC--CCCCCCCCccEEEEcccccCCcC-------------------------------------hHHHHHHHHHHHHhc
Q 026036 137 WGD--AFPIPNPDWDLILASDILLYVKQ-------------------------------------YSNLIKSLSVLLKSY 177 (244)
Q Consensus 137 ~~~--~~~~~~~~fD~I~~~~~l~~~~~-------------------------------------~~~l~~~l~~~~~~l 177 (244)
.+. ..-++.++.|+++++.++ ||.+ ..++...|+.=++-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~al-HWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYAL-HWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-T-TB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEechh-hhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 221 122456788888888877 3311 112333444444678
Q ss_pred CCCCceEeecccccC
Q 026036 178 KPKDSQVGHLTKNEQ 192 (244)
Q Consensus 178 k~gG~~~~~~~~~~~ 192 (244)
+|||++++...+.+.
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999999555544
No 305
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.22 E-value=0.48 Score=38.23 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=55.5
Q ss_pred ccCCeEEEeCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC------CCCCCCc
Q 026036 76 IERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF------PIPNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G~-G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~f 148 (244)
.++.+||-.|+|+ |.....+++..+.+|++++.+++.. +.++.. +... .++..+.. ......+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~----g~~~-----~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKL-ELAKEL----GADH-----VIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHHh----CCce-----eccCCcCCHHHHHHHhcCCCC
Confidence 5788999999985 5556666666689999999987654 444322 1100 01111100 0113469
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++.+-. .. ..+..+.+.++++|+++..
T Consensus 203 d~vi~~~~------~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 203 DVVIDAVG------GP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CEEEECCC------CH---HHHHHHHHhcccCCEEEEE
Confidence 99986321 11 3455667888999998765
No 306
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=94.19 E-value=0.13 Score=42.95 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=52.0
Q ss_pred EEEeCCCCcHHH-HHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC-----CCCCC-CCCccEEEE
Q 026036 81 CIELGSGTGALA-IFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD-----AFPIP-NPDWDLILA 153 (244)
Q Consensus 81 VLdlG~G~G~~~-~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~fD~I~~ 153 (244)
-+|||.|+..+- +.=+.+.+....++|++...+ ..+..|+..|+++..+..+....-+ ..... +.-||.++|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~-~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSF-NYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeecccccc-chhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 478876655332 222333467799999998776 8888899999997766655442211 11111 335999999
Q ss_pred cccccCC
Q 026036 154 SDILLYV 160 (244)
Q Consensus 154 ~~~l~~~ 160 (244)
+.++|.+
T Consensus 185 NPPFfe~ 191 (419)
T KOG2912|consen 185 NPPFFEN 191 (419)
T ss_pred CCchhhc
Confidence 9999765
No 307
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.11 E-value=0.34 Score=41.31 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=53.1
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHh-C-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKA-M-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~-~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
..+|.+||=+||| .|.+++.++++ . +.+|+++|.+++.+ +.++. . +.. ..+ -++.+ ...+|+|
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~-~~a~~-~---~~~---~~~-~~~~~-----~~g~d~v 226 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL-DLFSF-A---DET---YLI-DDIPE-----DLAVDHA 226 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH-HHHhh-c---Cce---eeh-hhhhh-----ccCCcEE
Confidence 3568899999975 44444455553 3 57899999988654 44432 1 110 000 00111 1147888
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- +. -....+ .++....+.+++||++++.
T Consensus 227 iD--~~-G~~~~~---~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 227 FE--CV-GGRGSQ---SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EE--CC-CCCccH---HHHHHHHHhCcCCcEEEEE
Confidence 73 33 111012 5677788999999998765
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.95 E-value=0.27 Score=41.36 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=58.3
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I 151 (244)
...++.+||..|+| .|..++.+++..+.+|++++.+++.. +.++.. +....+......+.+.. ......+|+|
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKL-ELAKEL----GADEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHh----CCCEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 35577899998876 46777777887788999999988765 444331 22100000000000000 1123468988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+.. . . .. ..++.+.+.|+++|+++..
T Consensus 237 id~--~-g---~~---~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDF--V-G---TQ---PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEC--C-C---CH---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 0 12 4667788999999998765
No 309
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.90 E-value=1.8 Score=38.65 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN 120 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~ 120 (244)
..+++||-||.|.+.+.+-..+..-|.++|+++.+. +..+.|
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~-~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAV-RTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHH-HHHHHH
Confidence 559999999999999988766555688999999875 555555
No 310
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.80 E-value=0.02 Score=40.04 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=28.7
Q ss_pred CccEEEEcccccCCc----ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVK----QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~----~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+||+|+|-.+. .+- ..+-+...++.+++.|+|||.+++-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 48999997776 322 1234668899999999999998876
No 311
>PRK13699 putative methylase; Provisional
Probab=93.38 E-value=0.48 Score=38.10 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=27.5
Q ss_pred CCCCCccEEEEcccccCC-----c-------ChHHHHHHHHHHHHhcCCCCceEe
Q 026036 143 IPNPDWDLILASDILLYV-----K-------QYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~-----~-------~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
.+++++|+|+..++.... . ..+-+...+.+++|+|||||.+++
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 345678888876554210 0 012234788999999999987654
No 312
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.6 Score=35.41 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=68.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHh-cCCCCCcceEee
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTT-NGITPALPHIKH 135 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 135 (244)
+.++..+..+......+...+|||+|+..=+..+.... ..+++.+|++...+...++.-... .++ .+.-+..
T Consensus 63 aaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~ 140 (321)
T COG4301 63 AAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCG 140 (321)
T ss_pred HHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhh
Confidence 34444443333334457899999999886655443332 467999999998765555443322 122 1111111
Q ss_pred ecCCCCCCC-C-CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 136 SWGDAFPIP-N-PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 136 ~~~~~~~~~-~-~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+....+... . ++==.++....+ -.....+....+..+...++||-.+.+.
T Consensus 141 ~~~~~La~~~~~~~Rl~~flGStl-GN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 141 DYELALAELPRGGRRLFVFLGSTL-GNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred hHHHHHhcccCCCeEEEEEecccc-cCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 221111111 1 122233334444 3345566778899999999999988876
No 313
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.95 E-value=2.9 Score=35.30 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=53.5
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CC-CC-CCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AF-PI-PNP 146 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~~~ 146 (244)
....+|.+||=+|+| .|..+..+++..+.+ |++++.+++.. +.+++. +... .+.....+ .. .. ...
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~-~~~~~~----ga~~---~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERL-ELAKAL----GADF---VINSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCE---EEcCCcchHHHHHHHhCCC
Confidence 345578899998864 344455566666777 99999887654 444321 2210 11000000 00 01 123
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+|+|+-. . . .. ..+....+.++++|++++.
T Consensus 231 ~~d~vid~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 231 GADVAIEC--S---G-NT---AARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCCEEEEC--C---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 68988742 2 1 12 3345567888999998765
No 314
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=92.95 E-value=0.33 Score=34.86 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C-C-CCCCCccEEEEcccccC
Q 026036 87 GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F-P-IPNPDWDLILASDILLY 159 (244)
Q Consensus 87 G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~~~~~fD~I~~~~~l~~ 159 (244)
|.|..++.+|+..+.+|+++|.++..+ +.+++. +. ...++..+. + . .....+|+|+-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~-~~~~~~----Ga-----~~~~~~~~~~~~~~i~~~~~~~~~d~vid~--~-- 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKL-ELAKEL----GA-----DHVIDYSDDDFVEQIRELTGGRGVDVVIDC--V-- 66 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHT----TE-----SEEEETTTSSHHHHHHHHTTTSSEEEEEES--S--
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHH-HHHHhh----cc-----cccccccccccccccccccccccceEEEEe--c--
Confidence 468888888888899999999998765 555442 22 111222221 0 1 112479988753 2
Q ss_pred CcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 160 VKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 160 ~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..+ ..++....+++++|++++.
T Consensus 67 --g~~---~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 67 --GSG---DTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp --SSH---HHHHHHHHHEEEEEEEEEE
T ss_pred --CcH---HHHHHHHHHhccCCEEEEE
Confidence 113 6778888999999998887
No 315
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.67 E-value=0.38 Score=42.27 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=61.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHH---HHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC-CCCCCCC-CCc
Q 026036 74 EWIERRRCIELGSGTGALAIFL---RKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG-DAFPIPN-PDW 148 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~---a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~f 148 (244)
+.+....++|+|+|.|.-.-++ .......++.||.+..|+ .....+.....-.+......+... ..++... ..|
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~-~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~y 275 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAML-KQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGY 275 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHH-HHHHHhhcChhhcCchhccccchhcccCCCCcccce
Confidence 3445568999998877543222 222256799999999886 444444332000011111110011 1123322 359
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHH-HhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLL-KSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~-~~lk~gG~~~~~ 186 (244)
|+|++++.+++..+........+.+. +..++|+.++++
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99999999966555444445555544 556677777776
No 316
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.63 E-value=0.18 Score=38.97 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=30.8
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCCh
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 110 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~ 110 (244)
.+.++.+|||+||-.|..+..+.++. ...|.|+|+-.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 35689999999999999998887765 45699999854
No 317
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.39 E-value=2.2 Score=35.13 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=53.0
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCccE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD~ 150 (244)
..++.+||=.|+| .|..+..+++..+.+ |+++|.+++.+ +.+++. +....+.... ..+.. .. ....+|+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~--~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSF----GATALAEPEV--LAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHc----CCcEecCchh--hHHHHHHHhCCCCCCE
Confidence 3478899999874 444555566666765 99999887654 444331 1110000000 00000 00 1235888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+-. . ..+ ..++...+.++++|++++.
T Consensus 191 vid~--~----G~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALEF--S----GAT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEEC--C----CCh---HHHHHHHHHhcCCCEEEEe
Confidence 8752 2 112 4566678889999998765
No 318
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.31 E-value=1.5 Score=37.47 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=53.5
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDY---NDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
..++.+||=+|+| .|.++..+++..+.+|++++. +++.+ +.+++ .+.. .+.....++.+ . .....+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~-~~~~~----~Ga~-~v~~~~~~~~~-~-~~~~~~d~ 241 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKA-DIVEE----LGAT-YVNSSKTPVAE-V-KLVGEFDL 241 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHH-HHHHH----cCCE-EecCCccchhh-h-hhcCCCCE
Confidence 3478899999875 456666677777889999987 44433 33332 2221 00000000101 0 11236888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+-. . ..+ ..+....+.+++||++++.
T Consensus 242 vid~--~----g~~---~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 IIEA--T----GVP---PLAFEALPALAPNGVVILF 268 (355)
T ss_pred EEEC--c----CCH---HHHHHHHHHccCCcEEEEE
Confidence 8753 2 112 3566778999999987765
No 319
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=91.87 E-value=0.34 Score=40.79 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=34.0
Q ss_pred eEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHH
Q 026036 80 RCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
+++||-||.|.+++.+...+..-|.++|+++.+. +..+.|-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-ETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-HHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-Hhhhhccc
Confidence 7999999999999999877655699999999876 66666654
No 320
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.63 E-value=0.48 Score=40.09 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 81 CIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
|+||-||.|.++..+...+..-+.++|+++.+. +..+.|-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~-~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQ-KTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHH-HHHHHhC
Confidence 689999999999888766433467899999876 6666654
No 321
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=91.52 E-value=0.73 Score=40.03 Aligned_cols=53 Identities=21% Similarity=0.099 Sum_probs=37.2
Q ss_pred ceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 026036 56 NFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 56 ~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l 113 (244)
...|.+..+--+.+ .+.++.+||-|.+ .|...+.++.....+|++||+|+..+
T Consensus 18 ~~~WEDp~vD~~aL----~i~~~d~vl~ItS-aG~N~L~yL~~~P~~I~aVDlNp~Q~ 70 (380)
T PF11899_consen 18 AQCWEDPRVDMEAL----NIGPDDRVLTITS-AGCNALDYLLAGPKRIHAVDLNPAQN 70 (380)
T ss_pred ccccCCcHHHHHHh----CCCCCCeEEEEcc-CCchHHHHHhcCCceEEEEeCCHHHH
Confidence 44677776655553 5568889999954 45555555556689999999999753
No 322
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=91.46 E-value=4.1 Score=36.87 Aligned_cols=107 Identities=9% Similarity=0.082 Sum_probs=64.3
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-----CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---C-CCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-----NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPD 147 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-----~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ 147 (244)
++..|.|..||+|.+.+...... ...+++.+....+. ..+..|...++.... .....+++.+. . ...+
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~-~~a~mnm~l~~~~~~--t~~~~~~dtl~~~d~~~~~~ 293 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY-NLCRMNMILHNIDYA--NFNIINADTLTTKEWENENG 293 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH-HHHHHHHHHcCCCcc--ccCcccCCcCCCcccccccc
Confidence 55789999999998876543321 24589999999875 667767655544211 11111223222 1 2346
Q ss_pred ccEEEEcccccC-C--cC-------------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLY-V--KQ-------------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~-~--~~-------------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
||.|++++++-. + .. ...=...+..+...|++||+-.++
T Consensus 294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 999998876411 0 00 012235667778899999987666
No 323
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.24 E-value=2.8 Score=35.80 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=58.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-ecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++... +....+....- ++.+.. ....+.+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv 229 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKV-DLLKNKL---GFDEAFNYKEEPDLDAALKRYFPEGI 229 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHHhc---CCCEEEECCCcccHHHHHHHHCCCCc
Confidence 34567889999987 377777778888888999999887654 4443211 22100000000 000000 0112358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- +. . . ..+....+.+++||++++.
T Consensus 230 D~v~d--~v---G--~---~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 230 DIYFD--NV---G--G---DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhccCCEEEEE
Confidence 88874 33 1 2 4566778899999998765
No 324
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.21 E-value=0.48 Score=37.83 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=56.6
Q ss_pred cccC-CeEEEeCCCCcHHHHHHHHhCC-------C---eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---
Q 026036 75 WIER-RRCIELGSGTGALAIFLRKAMN-------L---DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--- 140 (244)
Q Consensus 75 ~~~~-~~VLdlG~G~G~~~~~~a~~~~-------~---~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 140 (244)
+++| .||+||++-.|..+..++++.. . +|+++|+.+-+ . +++. ..++.+....
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--P----------I~GV-~qlq~DIT~~sta 104 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--P----------IEGV-IQLQGDITSASTA 104 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--c----------cCce-EEeecccCCHhHH
Confidence 3444 4899999999999999987751 1 29999987621 0 1000 0111111111
Q ss_pred ---C-CCCCCCccEEEEcccccCCcC---------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 ---F-PIPNPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ---~-~~~~~~fD~I~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ .+..++.|+|+|-..- .... .+-+..++.-...+|||||.|+--
T Consensus 105 e~Ii~hfggekAdlVvcDGAP-DvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAP-DVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCC-CccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 0 1233578888884332 2211 223445566667899999988765
No 325
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.18 E-value=0.5 Score=40.48 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=54.9
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCcc
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~fD 149 (244)
...++.+||=.||| .|..++.+|+..+. +|+++|.+++.. +.+++. +....+.....++.+.. .. ....+|
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKL-EWAREF----GATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHc----CCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 45678899998874 35555666776676 599999988754 444321 22100000000110000 01 123589
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. . .+ .+++...+.+++||++++.
T Consensus 248 ~vid--~~---g-~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVID--AV---G-RP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEE--CC---C-CH---HHHHHHHHHhccCCEEEEE
Confidence 8874 33 1 12 4556677889999998765
No 326
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.54 E-value=1.6 Score=37.61 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=54.8
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 149 (244)
....++.+||=.|+| .|..+..+++..+. +|+++|.+++.+ +.+++. +....+.....++.+.. ....+.+|
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~-~~a~~~----Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKL-ALAREL----GATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHHc----CCceEeCCCchhHHHHHHHHhCCCCC
Confidence 345678888888875 44555556666676 699999988764 444331 22100000000000000 01122588
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. . .+ ..+....+.++++|++++.
T Consensus 262 ~vid--~~---G-~~---~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 262 YAFE--MA---G-SV---PALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEE--CC---C-Ch---HHHHHHHHHHhcCCEEEEE
Confidence 8874 22 1 12 4556677889999998765
No 327
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=90.34 E-value=3.2 Score=34.98 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=53.2
Q ss_pred cCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC--CCCCCCCCCccEEE
Q 026036 77 ERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG--DAFPIPNPDWDLIL 152 (244)
Q Consensus 77 ~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~fD~I~ 152 (244)
++.+||-.|||. |..++.+++..+. +|++++.++... +.++.. +.. ..+..... .........+|+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~-~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPL-AVARAM----GAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHc----CCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 788999988763 5555666666676 799999887654 433321 110 01100000 00111123589988
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
..-. .. ..++.+.+.|+++|+++..
T Consensus 237 d~~g------~~---~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 237 EASG------AP---AALASALRVVRPGGTVVQV 261 (339)
T ss_pred ECCC------CH---HHHHHHHHHHhcCCEEEEE
Confidence 6321 12 3466778899999998764
No 328
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=90.20 E-value=1.1 Score=37.26 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=64.0
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---C-CCCCccE
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---I-PNPDWDL 150 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~fD~ 150 (244)
...++||=+|.|-|.+....++.- -.++..+|++...+ +.-++....-.....-..+.+..+|... . ..++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vi-e~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVI-ESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHH-HHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 355799999999998876555432 34588888887654 4444322211111222344555555422 1 2468999
Q ss_pred EEE--cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILA--SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~--~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ++++ -....--....++.+.+.||++|.++..
T Consensus 199 ii~dssdpv-gpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDSSDPV-GPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEecCCcc-chHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 986 3333 1111111236677888999999987776
No 329
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.74 E-value=1.4 Score=39.84 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=57.4
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--------------C
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--------------A 140 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 140 (244)
.++.+|+=+||| .|..+..+++..++.|+++|.+++.+ +.++. . +. ..+.++..+ .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rl-e~a~~-l---Ga----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVK-EQVQS-M---GA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH-c---CC----eEEeccccccccccccceeecCHH
Confidence 356899999998 56777777777788999999998754 44332 1 11 111111100 0
Q ss_pred --------CCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 141 --------FPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 141 --------~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+......+|+|+..-.+ .....+. =..++..+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tali-pG~~aP~--Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALI-PGKPAPK--LITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECccc-CCCCCCe--eehHHHHhhCCCCCEEE
Confidence 01112469999876544 2222221 23456788899998644
No 330
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.25 E-value=1.5 Score=37.29 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=58.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CC-CCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IP-NPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~f 148 (244)
....+|.+||=.|+ |.|.+++-+|+..+..++++-.+++.. +.++.. +....+....-+|.+... .. ...+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~-~~~~~l----GAd~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKL-ELLKEL----GADHVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHH-HHHHhc----CCCEEEcCCcccHHHHHHHHcCCCCc
Confidence 34556899999985 566777888888775777777766544 333322 221111111112222221 11 2369
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-. + -. .++....+.|+++|+++..
T Consensus 213 Dvv~D~--v-----G~---~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 213 DVVLDT--V-----GG---DTFAASLAALAPGGRLVSI 240 (326)
T ss_pred eEEEEC--C-----CH---HHHHHHHHHhccCCEEEEE
Confidence 998852 2 22 5666678889999998876
No 331
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.22 E-value=4.9 Score=28.53 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=48.0
Q ss_pred CeEEEeCCCCcH-HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 79 RRCIELGSGTGA-LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 79 ~~VLdlG~G~G~-~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
.+|.|+|.|-=. ++..+++. +..|+++|+++.. +. .++ ..+.-|..++--..-...|+|.+.
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~--------a~-~g~----~~v~DDitnP~~~iY~~A~lIYSi--- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT--------AP-EGL----RFVVDDITNPNISIYEGADLIYSI--- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc--------Cc-ccc----eEEEccCCCccHHHhhCccceeec---
Confidence 499999877543 34455544 7899999998751 11 122 222222222211112346777664
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+.+...+-.+++.+ |..+++.
T Consensus 78 ---RpppEl~~~ildva~aV--ga~l~I~ 101 (129)
T COG1255 78 ---RPPPELQSAILDVAKAV--GAPLYIK 101 (129)
T ss_pred ---CCCHHHHHHHHHHHHhh--CCCEEEE
Confidence 34566777777777754 3445554
No 332
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.18 E-value=1 Score=36.97 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHhhccCcccCCeEEEeCCCCcHHHHHHHHhC------CCeEEEEeCCh
Q 026036 68 WLMHHREWIERRRCIELGSGTGALAIFLRKAM------NLDITTSDYND 110 (244)
Q Consensus 68 ~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~------~~~v~~~D~~~ 110 (244)
.+.+..-+.+...++|+|||.|.++..++... ...++.+|-..
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34443344566799999999999998887765 35799999854
No 333
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.88 E-value=1.2 Score=32.07 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCc-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP 142 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (244)
.+++++.+.. ...+|+|+|-|.= ..+..+.+. +..|++||+.+... . .++ ..+.-|..++-.
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~a--------~-~g~----~~v~DDif~P~l 65 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRKA--------P-EGV----NFVVDDIFNPNL 65 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S-------------ST----TEE---SSS--H
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccccc--------c-cCc----ceeeecccCCCH
Confidence 5677776543 2349999998855 445566555 69999999998621 1 223 233323323211
Q ss_pred CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhc
Q 026036 143 IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSY 177 (244)
Q Consensus 143 ~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~l 177 (244)
..-...|+|.+..+- ++++..+.++++..
T Consensus 66 ~iY~~a~lIYSiRPP------~El~~~il~lA~~v 94 (127)
T PF03686_consen 66 EIYEGADLIYSIRPP------PELQPPILELAKKV 94 (127)
T ss_dssp HHHTTEEEEEEES--------TTSHHHHHHHHHHH
T ss_pred HHhcCCcEEEEeCCC------hHHhHHHHHHHHHh
Confidence 112357888886553 44556666677654
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.41 E-value=7.6 Score=30.73 Aligned_cols=105 Identities=8% Similarity=0.006 Sum_probs=54.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
++++||=.|++ |.++..+++.. +.+|++++-+++.. +.+....... ..+..+..++.+.... .
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKL-KRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789988875 44454444433 77999999987654 3232222211 1223444454432110 1
Q ss_pred CCCccEEEEcccccCCcChHH--------------HHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSN--------------LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~--------------l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-+..|.++.+...+......+ ....++.+.+.++++|++++.
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 134687777654432111111 123355666677778877766
No 335
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=88.34 E-value=1.1 Score=33.74 Aligned_cols=103 Identities=14% Similarity=0.230 Sum_probs=51.7
Q ss_pred HHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCC
Q 026036 67 EWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNP 146 (244)
Q Consensus 67 ~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (244)
+.++++...+.|++||=+|.=.-.+...+... +.+|.+.. ...- ........ .+ +.+..+...+ ...
T Consensus 2 qvllR~~~~f~~k~vL~~g~~~D~~~~~L~~~-~~~v~~~~--~~~~-~~~~~~~~-~~-------~~~~f~~~~~-~~~ 68 (155)
T PF08468_consen 2 QVLLRNSDLFEGKSVLFAGDPQDDLPAQLPAI-AVSVHVFS--YHHW-YALQKQAQ-SN-------VQFHFGAELP-ADQ 68 (155)
T ss_dssp HHHHTTHHHHTT-EEEEEE---SSHHHHS--S-EEEEEESB--HHHH-HHHHHHHG-GG-------EEE-SS--HH-HHT
T ss_pred hhhhhhHHHHCCCeEEEEcCCchhhHHHhhhc-CCEEEEEE--chHH-HHHhHhcc-cC-------ceEeeeccCC-ccc
Confidence 45666777788988999875444444444322 33454444 2211 11111111 11 1222211111 124
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||.||. |.+.+.+.+.=.|..+...|++||.++++
T Consensus 69 ~~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vV 104 (155)
T PF08468_consen 69 DFDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVV 104 (155)
T ss_dssp T-SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEE
T ss_pred CCCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 6999987 67777777778889999999999988876
No 336
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.25 E-value=2.9 Score=35.96 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=52.0
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|.+||=.|+| .|..++.+|+..+.+|++++.+++.....+++ .+... .+.....+......+.+|+|+-
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~~---vi~~~~~~~~~~~~~~~D~vid- 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGADS---FLVSTDPEKMKAAIGTMDYIID- 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCcE---EEcCCCHHHHHhhcCCCCEEEE-
Confidence 467888888874 55566667777788899988876532122221 12210 0000000000001124788874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. . .. .+++...+.+++||+++..
T Consensus 254 -~~---g-~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 254 -TV---S-AV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred -CC---C-CH---HHHHHHHHHhcCCcEEEEe
Confidence 32 1 12 3566678899999998765
No 337
>PRK11524 putative methyltransferase; Provisional
Probab=88.21 E-value=0.75 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCccEEEEcccccCCcC-------------hHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQ-------------YSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~-------------~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+++||+|++..+++.... ..-+.+.+.++.++|||||.+++.
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3568999999777532100 012347889999999999999876
No 338
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.97 E-value=7.7 Score=32.49 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=56.0
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||-+|+| .|.....+++..+.+|++++.+++.. +.++. . +... .+.....+......+.+|++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~~~---~~~~~~~~~~~~~~~~~d~v 229 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKR-ELARK-L---GADE---VVDSGAELDEQAAAGGADVI 229 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHH-h---CCcE---EeccCCcchHHhccCCCCEE
Confidence 345577889999886 66666666777788999999888765 44432 1 1100 00000000000012358988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. ++ . .. ..+..+.+.++++|+++..
T Consensus 230 i~--~~---~-~~---~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 230 LV--TV---V-SG---AAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred EE--CC---C-cH---HHHHHHHHhcccCCEEEEE
Confidence 75 22 1 12 3556678899999988765
No 339
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.79 E-value=10 Score=30.79 Aligned_cols=95 Identities=18% Similarity=0.113 Sum_probs=54.5
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccE
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDL 150 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 150 (244)
....++.+||=.|+|. |..++.+|+..+.+ |++++.+++.. +.+++. +....+ ....+. ......+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~-~~~~~~----g~~~~~----~~~~~~-~~~~~~~d~ 162 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARR-ELAEAL----GPADPV----AADTAD-EIGGRGADV 162 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHH-HHHHHc----CCCccc----cccchh-hhcCCCCCE
Confidence 4456788999888753 55556666766777 99999888764 443322 110000 000000 012235898
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+..-. .. ..+....+.++++|+++..
T Consensus 163 vl~~~~------~~---~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 163 VIEASG------SP---SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEccC------Ch---HHHHHHHHHhcCCcEEEEE
Confidence 875211 12 3456677889999998765
No 340
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.69 E-value=9.9 Score=31.21 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=77.8
Q ss_pred CeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCC--CCCcceEeee----cCCCCC---CCCCCcc
Q 026036 79 RRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGI--TPALPHIKHS----WGDAFP---IPNPDWD 149 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~---~~~~~fD 149 (244)
..|+.||||.=.-+.-+....+.+++=+|..+ +.+..++.+...+. ..+...+..+ |.+.+. +.....-
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~--v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA--VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH--HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCe
Confidence 47999999977666554322134455555543 32444444443322 1222333333 222111 2123455
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC------CCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE------GTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
++++-.++++ ...+...++++.+.+...||+.+++......... ......-........... .+..+..+.
T Consensus 161 l~i~EGvl~Y-L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 237 (260)
T TIGR00027 161 AWLWEGLLMY-LTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFG--IDRADVAEW 237 (260)
T ss_pred eeeecchhhc-CCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccC--CChhhHHHH
Confidence 7777777754 4556777899999888888888777633221100 000000000000111111 224788899
Q ss_pred HhhcCCeEEEe
Q 026036 224 CENAGLEVKHL 234 (244)
Q Consensus 224 l~~~Gf~v~~~ 234 (244)
++.+||++...
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
No 341
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=87.56 E-value=0.75 Score=33.23 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=38.9
Q ss_pred CCccEEEEcccccCCcChHHH--HHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHH
Q 026036 146 PDWDLILASDILLYVKQYSNL--IKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTS 223 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l--~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (244)
..||+|+. |.+ .....+++ ...++.++++++|||.+.-- .. ...+...
T Consensus 49 ~~~Da~yl-DgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Ty--------------------------s~--a~~Vr~~ 98 (124)
T PF05430_consen 49 ARFDAWYL-DGF-SPAKNPELWSEELFKKLARLSKPGGTLATY--------------------------SS--AGAVRRA 98 (124)
T ss_dssp T-EEEEEE--SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES------------------------------BHHHHHH
T ss_pred ccCCEEEe-cCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEe--------------------------ec--hHHHHHH
Confidence 56888876 443 33333322 28899999999999854421 11 2567788
Q ss_pred HhhcCCeEEEec
Q 026036 224 CENAGLEVKHLG 235 (244)
Q Consensus 224 l~~~Gf~v~~~~ 235 (244)
|.++||+|++..
T Consensus 99 L~~aGF~v~~~~ 110 (124)
T PF05430_consen 99 LQQAGFEVEKVP 110 (124)
T ss_dssp HHHCTEEEEEEE
T ss_pred HHHcCCEEEEcC
Confidence 999999998774
No 342
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.56 E-value=3.6 Score=34.53 Aligned_cols=99 Identities=8% Similarity=0.025 Sum_probs=57.1
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee-ecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH-SWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+++..+.+|++++.+++.. +.++. .+....+..... .+.+.. ....+.+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~-~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~gv 208 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV-AYLKK----LGFDVAFNYKTVKSLEETLKKASPDGY 208 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeccccccHHHHHHHhCCCCe
Confidence 44567889998884 467777778887788999999887654 44432 122100000000 000000 0112358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- ++ . . ..+....+.++++|+++..
T Consensus 209 dvv~d--~~---G--~---~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 209 DCYFD--NV---G--G---EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhCcCcEEEEe
Confidence 88874 33 1 1 3346678899999998865
No 343
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=87.52 E-value=2.4 Score=32.56 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCccEEEEcccccCCcC---------hHHHHHHHHHHHHhcCCCCceEeecccc
Q 026036 145 NPDWDLILASDILLYVKQ---------YSNLIKSLSVLLKSYKPKDSQVGHLTKN 190 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~---------~~~l~~~l~~~~~~lk~gG~~~~~~~~~ 190 (244)
.+++|+|+.|.++|.... ..++.+.+..+..+|+++..++..+..+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 467899999999974432 3467778888888888888777774444
No 344
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.44 E-value=3.2 Score=34.73 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=56.9
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCcc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD 149 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++. .+....+.....++.+.. ......+|
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~-~~l~~----~Ga~~vi~~~~~~~~~~v~~~~~~gvd 213 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV-AWLKE----LGFDAVFNYKTVSLEEALKEAAPDGID 213 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCCEEEeCCCccHHHHHHHHCCCCcE
Confidence 44567889988874 466667777777788999999887654 44433 122100000000110000 01124588
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- ++ . . ..+....+.++++|+++..
T Consensus 214 ~vld--~~---g--~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 214 CYFD--NV---G--G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEEE--CC---C--H---HHHHHHHHhhccCCEEEEE
Confidence 8874 33 1 1 4456778889999998754
No 345
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=87.38 E-value=0.94 Score=38.08 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=34.9
Q ss_pred hhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhH
Q 026036 70 MHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 70 ~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
.+.....++..++|---|.|..+..+.+.. ..+++|+|.+++++ +.+++++
T Consensus 13 l~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~-~~a~~~l 64 (310)
T PF01795_consen 13 LEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEAL-ERAKERL 64 (310)
T ss_dssp HHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHH-HHHHCCT
T ss_pred HHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHH-HHHHHHH
Confidence 333445677899999999999999988765 68999999999987 6665443
No 346
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=87.00 E-value=5.6 Score=34.09 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=59.6
Q ss_pred chHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC
Q 026036 60 PGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD 139 (244)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (244)
+.++.+.+. ...+.+++||=+|--...+...+. ....+|...+.+... ..+.+ .+. ...+.. +
T Consensus 6 ~~s~~~~r~----~~~~~~~~~l~~~~~~d~~~~~l~-~~~~~~~~~~~~~~~---~~~~~---~~~-----~~~f~~-~ 68 (342)
T PRK09489 6 PASEVLLRH----SDDFEQRRVLFAGDLQDDLPAQLD-AASVRVHTQQFHHWQ---VLSRQ---MGD-----NARFSL-V 68 (342)
T ss_pred hHHHHHHhh----HHHhCCCcEEEEcCcchhhHHhhh-ccceEEehhhhHHHH---HHHhh---cCC-----ceEecc-c
Confidence 345555444 344677889988876666555453 223345544443321 11111 111 111211 1
Q ss_pred CCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 140 AFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 140 ~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
........||+|+. |.+.....+.-.|..+.+.|+|||.+++.
T Consensus 69 ~~~~~~~~~d~~~~----~~pk~k~~~~~~l~~~~~~l~~g~~i~~~ 111 (342)
T PRK09489 69 ATAEDVADCDTLIY----YWPKNKQEAQFQLMNLLSLLPVGTDIFVV 111 (342)
T ss_pred cCCccCCCCCEEEE----ECCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 11112247999887 56667777778889999999999998887
No 347
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=86.92 E-value=6.1 Score=33.40 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=57.2
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCC-CCCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAF-PIPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~f 148 (244)
....+|.+||=.|+ |.|..++.+|+..+.+|++++.+++.. +.++... +....+..-. -++.+.. ......+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gv 222 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV-DLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGI 222 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCc
Confidence 45568889998886 466666777777788999998887654 4443311 2210000000 0000000 0112368
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- ++ . . ..+....+.++++|+++..
T Consensus 223 d~v~d--~~---g--~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 223 DIYFD--NV---G--G---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEEEE--CC---C--H---HHHHHHHHHhccCcEEEEe
Confidence 88874 33 1 1 4566778999999998754
No 348
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.85 E-value=12 Score=29.72 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=54.9
Q ss_pred HHHHhhccCcccCCeEEEeCCCCc----HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTG----ALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G----~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
++||.....-..-+.++|..|+-| .++++.|.+ -+.+++.+-.++..+ ...++.+...+....++++ .++.
T Consensus 30 aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~-~~~~~~l~~~~~~~~vEfv---vg~~ 105 (218)
T PF07279_consen 30 AEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL-SEYKKALGEAGLSDVVEFV---VGEA 105 (218)
T ss_pred HHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH-HHHHHHHhhccccccceEE---ecCC
Confidence 455554444445568999976543 334444333 377788887777654 4455555544543333333 2332
Q ss_pred ----CCCCCCCccEEEEcccccCCcChHHHH-HHHHHHHHhcCCCCceEee
Q 026036 141 ----FPIPNPDWDLILASDILLYVKQYSNLI-KSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ----~~~~~~~fD~I~~~~~l~~~~~~~~l~-~~l~~~~~~lk~gG~~~~~ 186 (244)
++. -...|+++. |+= ..+.. +.|+. .+ +.|.|.+++.
T Consensus 106 ~e~~~~~-~~~iDF~vV-Dc~-----~~d~~~~vl~~-~~-~~~~GaVVV~ 147 (218)
T PF07279_consen 106 PEEVMPG-LKGIDFVVV-DCK-----REDFAARVLRA-AK-LSPRGAVVVC 147 (218)
T ss_pred HHHHHhh-ccCCCEEEE-eCC-----chhHHHHHHHH-hc-cCCCceEEEE
Confidence 111 235787775 332 23333 44443 33 3456665555
No 349
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=86.70 E-value=4.6 Score=35.00 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=62.7
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHH--H-HHHHHHh---HHhcCCCCCcceEeeecCCCCC---
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQE--I-EDNIAYN---STTNGITPALPHIKHSWGDAFP--- 142 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~--l-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 142 (244)
....++..-.|+|+|.|.+....|... ...-+|+++.... + ......+ ....+. +...+....++..+
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk--~~~~~~~i~gsf~~~~~ 265 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK--KPNKIETIHGSFLDPKR 265 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC--CcCceeecccccCCHHH
Confidence 455688899999999998877666554 4457777775431 1 1111111 112222 11222222222221
Q ss_pred --CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 143 --IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 143 --~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
......++|+++++.|. +++..-+.++..-+++|-+++-.
T Consensus 266 v~eI~~eatvi~vNN~~Fd----p~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 266 VTEIQTEATVIFVNNVAFD----PELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHhhcceEEEEecccCC----HHHHHhhHHHHhhCCCcceEecc
Confidence 11345789999999844 34555566889999998886655
No 350
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.51 E-value=2.4 Score=35.86 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=52.5
Q ss_pred CeEEEeCC--CCcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEEc
Q 026036 79 RRCIELGS--GTGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~--G~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~~ 154 (244)
.+||=.|+ |.|..++.+|+..+. +|++++.+++.. +.++... +....+.....++.+.+ ......+|+|+-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~l---Ga~~vi~~~~~~~~~~i~~~~~~gvd~vid- 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSEL---GFDAAINYKTDNVAERLRELCPEGVDVYFD- 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhc---CCcEEEECCCCCHHHHHHHHCCCCceEEEE-
Confidence 78988886 466777777777787 799999887654 4443321 22100000000000000 011246898874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ . . ..+....+.|+++|+++..
T Consensus 231 -~~---g--~---~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 231 -NV---G--G---EISDTVISQMNENSHIILC 253 (345)
T ss_pred -CC---C--c---HHHHHHHHHhccCCEEEEE
Confidence 33 1 1 2245677889999998764
No 351
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.47 E-value=2.9 Score=36.26 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee----cCCCC-CC-C
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS----WGDAF-PI-P 144 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-~ 144 (244)
....++.+||.+|||. |..+..+++..+. +|+++|.+++.+ +.++... +. ..+... +...+ .. .
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~-~~~~~~~---~~----~vi~~~~~~~~~~~l~~~~~ 251 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL-EMARSHL---GA----ETINFEEVDDVVEALRELTG 251 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHcC---Cc----EEEcCCcchHHHHHHHHHcC
Confidence 3455788999999886 7777888887776 599999998765 5554431 11 111110 10000 11 1
Q ss_pred CCCccEEEEccccc------CCc------ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILL------YVK------QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~------~~~------~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+-.-.-- +.. ...+-...+.++.+.++++|++++.
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 23589887632100 000 0011125678888999999998776
No 352
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.55 E-value=2.3 Score=35.84 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.0
Q ss_pred CcccCCeEEEeCC-CCcHHHHHHHHhCCCeEEEEeCChH
Q 026036 74 EWIERRRCIELGS-GTGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 74 ~~~~~~~VLdlG~-G~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
...+|++|-=+|. |-|.+++-+|+.++.+|+++|-+..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 3458888877775 6999999999999999999999863
No 353
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.30 E-value=15 Score=30.66 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=54.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC---CCCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA---FPIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 147 (244)
....++.+||-+|+| .|...+.+++..+.+ |++++.+++.. +.+++. +.. ..+.....+. .......
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKL-ELAKKL----GAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCe---EEecCCCCCHHHHHHhcCCC
Confidence 445678899999864 355556666666776 89999887754 444321 221 0111000000 0112346
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+++.. . . .. ..+....+.++++|+++..
T Consensus 227 vd~v~~~--~---~-~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 227 FDVVIEA--T---G-VP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CcEEEEC--C---C-Ch---HHHHHHHHHHhcCCEEEEE
Confidence 8999863 2 1 12 4556677888999988765
No 354
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=84.27 E-value=17 Score=30.33 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||=.||| .|.....+++..+.+|+.++.+++.. +.++. .+.. . .+..... ....+|++
T Consensus 163 ~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~-~~~~~----~g~~----~-~~~~~~~---~~~~vD~v 229 (329)
T cd08298 163 AGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQ-ELARE----LGAD----W-AGDSDDL---PPEPLDAA 229 (329)
T ss_pred hCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHH-HHHHH----hCCc----E-EeccCcc---CCCcccEE
Confidence 345567788877654 23333445566688999998887543 43322 1220 0 0111111 22358887
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..... . ..+..+.+.++++|+++..
T Consensus 230 i~~~~~------~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 230 IIFAPV------G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEcCCc------H---HHHHHHHHHhhcCCEEEEE
Confidence 753221 2 4566788999999998865
No 355
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.21 E-value=3.1 Score=33.13 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=29.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQ 111 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~ 111 (244)
..+.||=.||..|.++.++++.+ +.+|+++--+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 44689999999999998888776 888999887654
No 356
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.84 E-value=15 Score=32.87 Aligned_cols=75 Identities=21% Similarity=0.117 Sum_probs=40.4
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
...+++|+=+|+| +|.-...++...+.+|+++|.++........+.+...++ ... .+.... ....+|+|+.
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv----~~~---~~~~~~-~~~~~D~Vv~ 84 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGA----TVR---LGPGPT-LPEDTDLVVT 84 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCC----EEE---ECCCcc-ccCCCCEEEE
Confidence 3467799999987 444332233334788999997653221333333444444 111 111111 1235898888
Q ss_pred cccc
Q 026036 154 SDIL 157 (244)
Q Consensus 154 ~~~l 157 (244)
+..+
T Consensus 85 s~Gi 88 (480)
T PRK01438 85 SPGW 88 (480)
T ss_pred CCCc
Confidence 7766
No 357
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=83.39 E-value=6.8 Score=32.79 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=44.2
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCC--CeEEEEeCChHHHHHHHHHhHH
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMN--LDITTSDYNDQEIEDNIAYNST 122 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~--~~v~~~D~~~~~l~~~~~~~~~ 122 (244)
|.+-+.....+.++...+|.--|.|..+..+..+++ .+++++|.++.++ +.++....
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai-~~a~~~l~ 69 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAI-AIAKERLK 69 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHH-HHHHHHhh
Confidence 333444455666788999999999999999988873 6799999999987 77766543
No 358
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.18 E-value=8 Score=32.73 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=54.7
Q ss_pred ccCcccCCeEEEeCCCC-cHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeec---CCCC--CCC
Q 026036 72 HREWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSW---GDAF--PIP 144 (244)
Q Consensus 72 ~~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~ 144 (244)
.....++.+||=.|+|. |..++.+|+..+.+ |++++.+++.. +.++. . +....+......+ .+.+ ...
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRL-EFAKE-L---GATHTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHH-c---CCcEEeccccccchhHHHHHHHHhC
Confidence 34556788888877653 55556667777777 89998887654 33322 1 1110000000000 0000 011
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+-.-. .. ..+....+.++++|+++..
T Consensus 232 ~~~~d~vld~~g------~~---~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 232 GKGPDVVIECTG------AE---SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCCEEEECCC------CH---HHHHHHHHHhhcCCEEEEE
Confidence 235899886311 11 2456678889999997754
No 359
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.75 E-value=2.2 Score=37.11 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=37.8
Q ss_pred CCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++++|.++.+|.. .+.+...+.+.++++.+.++|||+++.=
T Consensus 292 ~~~s~~~~vL~D~~-Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 292 PPGSFDRFVLSDHM-DWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CCCCeeEEEecchh-hhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 46799999999998 8888899999999999999999998764
No 360
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.57 E-value=2 Score=34.87 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
.|+.++.+..+..+..+++|.-||+|.+++.+.. .+.+|+.-|+++.
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~ 53 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPD 53 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC----SSEEEEEES-HH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcc-cccceeeeechHH
Confidence 4566666654433678999999999999988865 4888999999985
No 361
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=82.48 E-value=8.4 Score=33.59 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=24.6
Q ss_pred CccE-EEEccccc---CCcChHHHHHHHHHHHHhcCCCCceEe
Q 026036 147 DWDL-ILASDILL---YVKQYSNLIKSLSVLLKSYKPKDSQVG 185 (244)
Q Consensus 147 ~fD~-I~~~~~l~---~~~~~~~l~~~l~~~~~~lk~gG~~~~ 185 (244)
..|+ |+|..+-. ...+...+..+.+.+.+.|++|-.+++
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 4564 45544443 334455667888999999999754333
No 362
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=82.41 E-value=14 Score=28.35 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=67.3
Q ss_pred EEEeCCCCcHHHHH--HHHhCCCeEEEEeCChHHHHHHHHHhHH--------hcCCCC-----CcceEeeecCCCCCCCC
Q 026036 81 CIELGSGTGALAIF--LRKAMNLDITTSDYNDQEIEDNIAYNST--------TNGITP-----ALPHIKHSWGDAFPIPN 145 (244)
Q Consensus 81 VLdlG~G~G~~~~~--~a~~~~~~v~~~D~~~~~l~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~ 145 (244)
|-=+|+|+=..+++ ++. .+.+|+..|.+++.+ +.+++.+. ...++. ....+. +...+....
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~--~~~dl~~~~ 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEAL-ERARKRIERLLDRLVRKGRLSQEEADAALARIS--FTTDLEEAV 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHH-HHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE--EESSGGGGC
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHH-HhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc--cccCHHHHh
Confidence 44567764333332 333 389999999999875 33332222 112210 011111 112222222
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCC------------CCCCCCC----CCeEEEeee
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQG------------EGTEGLP----WPAFLMSWR 209 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~ 209 (244)
..|+|+=+- .+..+.-.+.++++.+.+.|+-.+...+....-. .+.++.. .|....-..
T Consensus 78 -~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~ 152 (180)
T PF02737_consen 78 -DADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPG 152 (180)
T ss_dssp -TESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred -hhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCC
Confidence 578887632 2455555688899999998887555442222111 0111111 122333333
Q ss_pred eccCccchhhHHHHHhhcCCeEEEecc
Q 026036 210 RRIGKEDETIFFTSCENAGLEVKHLGS 236 (244)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~Gf~v~~~~~ 236 (244)
++-..+..+...+++++.|.....+.+
T Consensus 153 ~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 153 PKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 333333445666788888988877643
No 363
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=82.39 E-value=5.9 Score=33.39 Aligned_cols=100 Identities=12% Similarity=0.081 Sum_probs=56.1
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 149 (244)
....++.+||-.|+| .|..++.+|+..+.+|+++..+++.. +.++.. +....+......+.+.+. .....+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~-~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFAREL----GADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHH-HHHHHh----CCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 345678899999875 35666677777789999998777654 444321 110000000000001010 1123589
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++.. + . .. ..+..+.+.++++|+++..
T Consensus 230 ~vld~--~-g---~~---~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 230 VVIDA--T-G---NP---ASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred EEEEC--C-C---CH---HHHHHHHHHHhcCCEEEEE
Confidence 98863 1 1 11 4456678888999997754
No 364
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=82.09 E-value=8.7 Score=32.37 Aligned_cols=98 Identities=18% Similarity=0.142 Sum_probs=53.3
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...++.+||=.|+| .|.....+++..+.+|++++.+++.. +.+++. +....+.....++.+.+... ..+|+++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~~----g~~~~i~~~~~~~~~~~~~~-~~~d~vi 233 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKA-DLARKL----GAHHYIDTSKEDVAEALQEL-GGAKLIL 233 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHH-HHHHHc----CCcEEecCCCccHHHHHHhc-CCCCEEE
Confidence 45577889888853 44445556666688999999887654 444321 11100000000000000001 2478887
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.. . . .. ..+....+.++++|+++..
T Consensus 234 ~~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 234 AT--A---P-NA---KAISALVGGLAPRGKLLIL 258 (333)
T ss_pred EC--C---C-ch---HHHHHHHHHcccCCEEEEE
Confidence 52 1 0 12 4566678889999988765
No 365
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.07 E-value=2.2 Score=39.02 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=37.5
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCCh
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM--NLDITTSDYND 110 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~ 110 (244)
++..|...=..+..+-++..||||||-.|.....+++.. +.-|+|+|+-+
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 455554444444445577899999999999998888776 66799999965
No 366
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=82.06 E-value=6.9 Score=28.96 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=25.9
Q ss_pred EeCCCCc--HHHHHHH--HhC-CCeEEEEeCChHHHHHHHHHh--HHhcCC
Q 026036 83 ELGSGTG--ALAIFLR--KAM-NLDITTSDYNDQEIEDNIAYN--STTNGI 126 (244)
Q Consensus 83 dlG~G~G--~~~~~~a--~~~-~~~v~~~D~~~~~l~~~~~~~--~~~~~~ 126 (244)
|+|+..| .....+. ... ..+|+++|.++..+ +.++++ +..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~-~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF-EKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH-HHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH-HHHhHHHHHHhcCC
Confidence 8999999 4444443 222 67899999999876 677777 666544
No 367
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.57 E-value=8.4 Score=32.98 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=50.7
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC--CCCCCCCCccEEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD--AFPIPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fD~I~ 152 (244)
.+|.+||=.|+| .|..++.+|+..+.+|++++.+++.. ..+.+. .+... .+ ...+ .+......+|+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~-~~~~~~---~Ga~~---~i--~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR-EEALEH---LGADD---YL--VSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHh---cCCcE---Ee--cCCChHHHHHhcCCCcEEE
Confidence 467888888763 45555666777788888888776543 222211 12210 00 0101 0000112478776
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
- ++ ... ..+....+.++++|+++..
T Consensus 250 d--~~----g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 250 D--TV----PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E--CC----Cch---HHHHHHHHHhccCCEEEEE
Confidence 4 22 112 4556677889999987765
No 368
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=81.48 E-value=19 Score=28.35 Aligned_cols=117 Identities=13% Similarity=0.137 Sum_probs=53.6
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHH---HHHHHHhC---CCe--EEEEeCChHHHHHHHHHhHHhcCCCCCcce
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGAL---AIFLRKAM---NLD--ITTSDYNDQEIEDNIAYNSTTNGITPALPH 132 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~---~~~~a~~~---~~~--v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~ 132 (244)
++..+++.+.+..+.....+|+=+ ||+|.. ++.+|+.. +.. |...--......+.++.|....+... .
T Consensus 32 AG~aVa~~i~~~~~~~~~~~v~vl-cG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~---~ 107 (203)
T COG0062 32 AGLAVARAILREYPLGRARRVLVL-CGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGG---V 107 (203)
T ss_pred HHHHHHHHHHHHcCcccCCEEEEE-ECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCCc---c
Confidence 566677777666543334566665 777644 45555443 333 44433222212244444433323211 1
Q ss_pred EeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 133 IKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 133 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+ .+.+... ....+|+|| |.+|-..-...+..-++.+...+...|+.++.
T Consensus 108 v--~~~~~~~-~~~~~dvIV--DalfG~G~~g~lrep~a~~Ie~iN~~~~pivA 156 (203)
T COG0062 108 V--KIKELED-EPESADVIV--DALFGTGLSGPLREPFASLIEAINASGKPIVA 156 (203)
T ss_pred e--eeccccc-ccccCCEEE--EeceecCCCCCCccHHHHHHHHHHhcCCceEE
Confidence 1 1111110 234688876 56654333333334444444445555664444
No 369
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.29 E-value=16 Score=30.21 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=22.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCCh
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND 110 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~ 110 (244)
.++++||=.|++.| ++..+++.. +.+|+.++.+.
T Consensus 44 ~~~k~iLItGasgg-IG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 44 LKGKVALITGGDSG-IGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCc
Confidence 36778888886544 444444332 78899998765
No 370
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.25 E-value=12 Score=33.81 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=41.4
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
..++++|+=+|.| +|..+..++...+.+|+++|..+..+ +.+ ...++ ..+ .+.........+|+|+.
T Consensus 9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~-~~l----~~~g~----~~~---~~~~~~~~l~~~D~VV~ 76 (488)
T PRK03369 9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL-RPH----AERGV----ATV---STSDAVQQIADYALVVT 76 (488)
T ss_pred ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHH----HhCCC----EEE---cCcchHhHhhcCCEEEE
Confidence 3467899999987 55555555555688999999775443 222 21233 111 11111111135799999
Q ss_pred cccc
Q 026036 154 SDIL 157 (244)
Q Consensus 154 ~~~l 157 (244)
+..+
T Consensus 77 SpGi 80 (488)
T PRK03369 77 SPGF 80 (488)
T ss_pred CCCC
Confidence 8887
No 371
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.87 E-value=7.7 Score=32.90 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=52.5
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-CCCCcc-
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-PNPDWD- 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD- 149 (244)
...++.+||=.|+| .|..++.+|+..+.+ |++++.+++.. +.++. . +....+............. ....+|
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---Ga~~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKL-ALAKS-L---GAMQTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH-HHHHH-c---CCceEecCcccCHHHHHHHhcCCCCCe
Confidence 44578899999874 444555566666776 78999888654 44332 1 1100000000000000000 123567
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. ..+ .++....+.+++||++++.
T Consensus 232 ~v~d--~~----G~~---~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILE--TA----GVP---QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEE--CC----CCH---HHHHHHHHHhhcCCEEEEE
Confidence 4442 32 122 4667778899999998765
No 372
>PRK08324 short chain dehydrogenase; Validated
Probab=80.83 E-value=16 Score=34.54 Aligned_cols=77 Identities=9% Similarity=0.135 Sum_probs=41.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.+|++||=.|+ +|.+|..+++.. +.+|+++|.+++.+ +......... ..+..+..+..+....
T Consensus 420 l~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~-~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 420 LAGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAA-EAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHH-HHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35678887775 444555444333 77899999998654 3332222111 1223444444432110
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..+.+|+|+.+-..
T Consensus 495 ~~g~iDvvI~~AG~ 508 (681)
T PRK08324 495 AFGGVDIVVSNAGI 508 (681)
T ss_pred HcCCCCEEEECCCC
Confidence 12368998887654
No 373
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.76 E-value=8.6 Score=31.45 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcChHHHHHHH
Q 026036 92 AIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQYSNLIKSL 170 (244)
Q Consensus 92 ~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~~~l~~~l 170 (244)
+..+.+.+ ..+|++.|.++..+ +.+.+ .++. .... . + .. .-..+|+|+.+-++ ....+++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~-~~a~~----~g~~---~~~~--~-~-~~-~~~~~DlvvlavP~------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETL-EAALE----LGII---DEAS--T-D-IE-AVEDADLVVLAVPV------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHH-HHHHH----TTSS---SEEE--S-H-HH-HGGCCSEEEE-S-H------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHH-HHHHH----CCCe---eecc--C-C-Hh-HhcCCCEEEEcCCH------HHHHHHH
Confidence 55666665 57999999999765 33322 1221 1110 0 0 00 11346888875443 3455777
Q ss_pred HHHHHhcCCCC
Q 026036 171 SVLLKSYKPKD 181 (244)
Q Consensus 171 ~~~~~~lk~gG 181 (244)
+++...+++|+
T Consensus 63 ~~~~~~~~~~~ 73 (258)
T PF02153_consen 63 EEIAPYLKPGA 73 (258)
T ss_dssp HHHHCGS-TTS
T ss_pred HHhhhhcCCCc
Confidence 77777777765
No 374
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=80.59 E-value=6.1 Score=33.35 Aligned_cols=99 Identities=13% Similarity=0.168 Sum_probs=52.8
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCcc
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWD 149 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD 149 (244)
...++.+||-.|+| .|..++.+|+..+. .|++++.++... +.+++. +....+......+.+.+. .....+|
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~-~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERL-DLAKEA----GATDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHH-HHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCCc
Confidence 34567899887764 35556666776674 789998776554 433322 110000000000101000 1124689
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+.. . . .. ..+....+.++++|+++..
T Consensus 239 ~vld~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 239 CVIEA--V---G-FE---ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEEc--c---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 88752 2 1 11 3556677888999987754
No 375
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=80.57 E-value=18 Score=30.31 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=52.9
Q ss_pred CeEEEeCCC-Cc-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHh--HHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 79 RRCIELGSG-TG-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYN--STTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 79 ~~VLdlG~G-~G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+|+=+|+| .| .++..+++. +.+|+.++-+.+.+ +..+++ ...... ............ +...+.||+|+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~-~~i~~~~Gl~i~~~-g~~~~~~~~~~~--~~~~~~~D~viv~ 77 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRL-AAYQQAGGLTLVEQ-GQASLYAIPAET--ADAAEPIHRLLLA 77 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHH-HHHhhcCCeEEeeC-CcceeeccCCCC--cccccccCEEEEE
Confidence 478888887 34 445556554 67899999876555 444332 111100 000000111111 1123479988763
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
... .++..+++.+...+.++..++..
T Consensus 78 -----vK~-~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 78 -----CKA-YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred -----CCH-HhHHHHHHHHHhhCCCCCEEEEE
Confidence 122 24557888899999888866555
No 376
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.52 E-value=25 Score=28.41 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=40.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
+++++|=.|++ |.++..+++.. +.+|+.+|.+++.+.+..+. . ..++..+..|..+.... .
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAAS-L-----GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h-----CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 56688877754 44555554443 77999999987644222221 1 11233445555443110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
.++.|+++.+...
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 2467888876554
No 377
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=80.14 E-value=32 Score=28.53 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=53.1
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
....++.+||=.|+| .|.....+++..+.+|++++.+++.. +.++. .+.. ....+.+. .....+|+|
T Consensus 151 ~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~~-----~~~~~~~~--~~~~~~d~v 218 (319)
T cd08242 151 VPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKL-ALARR----LGVE-----TVLPDEAE--SEGGGFDVV 218 (319)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH----cCCc-----EEeCcccc--ccCCCCCEE
Confidence 345577888888753 23333444556688899999887764 54443 1221 01111111 123468988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-. . . .. ..+....+.++++|+++..
T Consensus 219 id~--~---g-~~---~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 219 VEA--T---G-SP---SGLELALRLVRPRGTVVLK 244 (319)
T ss_pred EEC--C---C-Ch---HHHHHHHHHhhcCCEEEEE
Confidence 752 2 1 11 3456677888999988763
No 378
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=79.98 E-value=36 Score=28.90 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=50.9
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecC---CCC-CC-CCCCc
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWG---DAF-PI-PNPDW 148 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~~~f 148 (244)
.++.+||=.|+| .|..+..+|+..+. +|++++.+++.. +.+++ .+....+........ ..+ .. ....+
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL-ELARE----FGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHH----cCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 377888888763 34444556666677 899999877643 33322 122100000000000 000 01 12358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-. . . .. ..+....+.++++|+++..
T Consensus 251 d~vid~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 251 DVVIEA--S---G-HP---AAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred cEEEEC--C---C-Ch---HHHHHHHHHhccCCEEEEE
Confidence 988752 2 1 11 3455667889999998765
No 379
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.95 E-value=10 Score=32.12 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=53.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~f 148 (244)
....++.+||=.|+| .|..++.+|+..+. .|+++|.+++.. +.++. .+....+.....++.+.. .. ....+
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELAKE----YGATDIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCceEecCCCCCHHHHHHHHhCCCCC
Confidence 345578899998765 44445556666666 599999987654 44332 122100000000000000 01 12358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+- +. . .+ ..+..+.+.++++|+++..
T Consensus 237 d~vld--~~---g-~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVII--AG---G-GQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEE--CC---C-CH---HHHHHHHHHhhcCCEEEEe
Confidence 98875 22 1 12 4566778889999988754
No 380
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.88 E-value=11 Score=32.06 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=53.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~f 148 (244)
....++.+||=.|+| .|..++.+++..+. +|++++.+++.. +.++.. +....+.....++.+.+ .. ....+
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARR-ELAEEL----GATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHh----CCCEEECCCccCHHHHHHHHhCCCCC
Confidence 345578888888763 34444555666677 799999887654 444321 22100000000110100 01 12348
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+-.-. .. ..++...+.++++|+++..
T Consensus 243 d~vid~~g------~~---~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 243 DVSFDCAG------VQ---ATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CEEEECCC------CH---HHHHHHHHhccCCCEEEEE
Confidence 98875311 12 3566778889999987765
No 381
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=79.69 E-value=13 Score=31.06 Aligned_cols=38 Identities=24% Similarity=0.255 Sum_probs=27.1
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
...+++|+=+|+| .|......++..+++|+.+|.++..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 3468899999987 3433344444558899999999764
No 382
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=79.06 E-value=22 Score=27.94 Aligned_cols=121 Identities=16% Similarity=0.130 Sum_probs=65.8
Q ss_pred cceeechHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC---C--CeEEEEeCChHHHHHHHHHhHHhcCCCCC
Q 026036 55 ANFLWPGTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM---N--LDITTSDYNDQEIEDNIAYNSTTNGITPA 129 (244)
Q Consensus 55 ~~~~w~~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~---~--~~v~~~D~~~~~l~~~~~~~~~~~~~~~~ 129 (244)
|.-+|..-..+..+-... ...+...|+|+|+-.|..++.+|... + .+|+++|++...+...+++ . ..
T Consensus 48 G~p~~k~p~D~~~yQell-w~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-p~ 119 (237)
T COG3510 48 GIPCIKSPSDMWNYQELL-WELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-PD 119 (237)
T ss_pred cccccCCHHHHHHHHHHH-HhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-CC
Confidence 444555555554442111 11245699999998887776665432 4 7899999987543222221 1 12
Q ss_pred cceEeeecCCCC-----C-CCCCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 130 LPHIKHSWGDAF-----P-IPNPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 130 ~~~~~~~~~~~~-----~-~~~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+..++-+..++. . ...+.--+.++-|.- |+ .....+.++.+.++|..|-.+++.
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsd-Hs--~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSD-HS--MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCC-ch--HHHHHHHHHHhhhHhhcCceEEEe
Confidence 223322222210 0 112222455566665 22 345557788888999888876665
No 383
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.92 E-value=10 Score=32.24 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=32.9
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCCeEEEEeCChHHHHHHHH
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNLDITTSDYNDQEIEDNIA 118 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~ 118 (244)
....++.+||=+|||. |..++.+|+..+.+|+++|.+++.+ +.++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~-~~~~ 207 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKL-EMMK 207 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHH
Confidence 3456788999999853 5666666777788999999988765 4443
No 384
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=77.39 E-value=9.9 Score=32.03 Aligned_cols=109 Identities=23% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCeEEEeCCCCcHH--HHHHHH-----hC-----C---------CeEEEEeCCh-HHHHHHHHHhHHhcCC---------
Q 026036 78 RRRCIELGSGTGAL--AIFLRK-----AM-----N---------LDITTSDYND-QEIEDNIAYNSTTNGI--------- 126 (244)
Q Consensus 78 ~~~VLdlG~G~G~~--~~~~a~-----~~-----~---------~~v~~~D~~~-~~l~~~~~~~~~~~~~--------- 126 (244)
..+||-||.|.|.= +++.+. .. . ..|+++|+.+ ..+...+...+..+..
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 36999999999733 333222 00 1 3799999976 2333555544443311
Q ss_pred ----CCCcceEeeecCCCCCCCC---------CCccEEEEccccc--CCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 127 ----TPALPHIKHSWGDAFPIPN---------PDWDLILASDILL--YVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 127 ----~~~~~~~~~~~~~~~~~~~---------~~fD~I~~~~~l~--~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....-.+.+...|.+.... +..++|....++- +..+...-.+.+..+-..++||..+.|+
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 0011112222223222111 1345554433331 2234566667888888999998877776
No 385
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.38 E-value=29 Score=26.31 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC
Q 026036 61 GTFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA 140 (244)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (244)
.+..|++.+.+... .+.+|+=|||=+-...+.-......+++..|++..-- .. + .. ..+-.|...+
T Consensus 11 T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~-~~--------~--~~-~F~fyD~~~p 76 (162)
T PF10237_consen 11 TAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFE-QF--------G--GD-EFVFYDYNEP 76 (162)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHH-hc--------C--Cc-ceEECCCCCh
Confidence 45566666665332 4579999988665444333122367899999987521 10 0 01 1334444443
Q ss_pred CCCC---CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 141 FPIP---NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 141 ~~~~---~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+ .++||+|++=+++ ...+-+.++.+.+.-++|+++++++.
T Consensus 77 ~~~~~~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 77 EELPEELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred hhhhhhcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 3222 4689999986665 33344446666667777888887776
No 386
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=76.79 E-value=16 Score=30.74 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=54.0
Q ss_pred cCcccCCeEEEeCCCC-cHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----CCCC-
Q 026036 73 REWIERRRCIELGSGT-GALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----FPIP- 144 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~-G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~- 144 (244)
....++.+||-.|+|. |...+.+|+..+.+ |++++-+++.. +.++.. +.. .. +.+.+. ....
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~-~~l~~~----g~~---~~--~~~~~~~~~~~~~~~~ 224 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKL-AVAREL----GAD---DT--INPKEEDVEKVRELTE 224 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHc----CCC---EE--ecCccccHHHHHHHhC
Confidence 3455788999998653 55556667766776 99998877654 443321 110 01 111110 0111
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+.. . . .. ..+..+.+.++++|+++..
T Consensus 225 ~~~~d~vld~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 225 GRGADLVIEA--A---G-SP---ATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCEEEEC--C---C-CH---HHHHHHHHHhhcCCEEEEE
Confidence 2348998853 2 1 11 3456678888999997765
No 387
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=76.76 E-value=5.3 Score=29.10 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=41.7
Q ss_pred CcccCCeEEEeCCC-CcHH-HHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSG-TGAL-AIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~-~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++++||=||+| +|.. ...++..+..+|+.+.-+.+...+.+ ..... . .+.. ..+.+ +......+|+|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~-~~~~~--~--~~~~--~~~~~-~~~~~~~~Div 79 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA-EEFGG--V--NIEA--IPLED-LEEALQEADIV 79 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH-HHHTG--C--SEEE--EEGGG-HCHHHHTESEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHcCc--c--ccce--eeHHH-HHHHHhhCCeE
Confidence 34578999999986 3322 34444554566999999876542332 22211 1 1112 22322 12123469999
Q ss_pred EEcccc
Q 026036 152 LASDIL 157 (244)
Q Consensus 152 ~~~~~l 157 (244)
+++-..
T Consensus 80 I~aT~~ 85 (135)
T PF01488_consen 80 INATPS 85 (135)
T ss_dssp EE-SST
T ss_pred EEecCC
Confidence 997666
No 388
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=75.73 E-value=4.8 Score=32.13 Aligned_cols=49 Identities=10% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
..+.+.+..+.....+..|.|||-|.|.++..+...+..+...++++..
T Consensus 36 ~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~R 84 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTR 84 (326)
T ss_pred hHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccc
Confidence 3445555556666677899999999999999988777777888888764
No 389
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.32 E-value=15 Score=30.38 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS 121 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~ 121 (244)
...+.+.+... ...++..|||--+|+|..++++.. .+...+++|++++-+ +.+.+..
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~-~~~~~r~ 264 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYV-EVALKRL 264 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHH-HHHHHHH
Confidence 44555555544 456889999999999999877754 588999999999855 4544443
No 390
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=75.21 E-value=6.2 Score=27.10 Aligned_cols=75 Identities=15% Similarity=0.028 Sum_probs=42.1
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEeecccc------cCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHhhc
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKN------EQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCENA 227 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 227 (244)
.|++ -|...++..+++..+....+ |+++++.... ....+.+|.+.. -.++...-.++.+.+.+.++
T Consensus 2 mDvL-IHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~d-----Rsp~i~~~~e~~l~~~l~~~ 73 (97)
T PF07109_consen 2 MDVL-IHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPD-----RSPRIYPHREEDLRRALAAA 73 (97)
T ss_pred cceE-eccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCC-----CCCcEEEeCHHHHHHHHHhC
Confidence 4555 55567788899999888654 6666661111 111233332211 00111111247888899999
Q ss_pred CCeEEEecc
Q 026036 228 GLEVKHLGS 236 (244)
Q Consensus 228 Gf~v~~~~~ 236 (244)
|+++.+...
T Consensus 74 g~~~~r~~r 82 (97)
T PF07109_consen 74 GWRIGRTER 82 (97)
T ss_pred CCeeeeccc
Confidence 999887654
No 391
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.97 E-value=12 Score=32.98 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=53.3
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
...+|++|+=+|+| .|......++..+++|+.+|.++... ..++. .+. ..+. ..+. ....|+|+
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~-~~A~~----~G~----~~~~--~~e~----v~~aDVVI 262 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICA-LQAAM----EGY----EVMT--MEEA----VKEGDIFV 262 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhH-HHHHh----cCC----EEcc--HHHH----HcCCCEEE
Confidence 34689999999998 45555555666688999999998643 32221 222 0111 1111 12479888
Q ss_pred EcccccCCcChHHHHHHHHH-HHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSV-LLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~-~~~~lk~gG~~~~~ 186 (244)
..-. .+ .++.. ..+.+|+||+++..
T Consensus 263 ~atG------~~---~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 263 TTTG------NK---DIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred ECCC------CH---HHHHHHHHhcCCCCcEEEEe
Confidence 6321 12 34443 47889999987655
No 392
>PRK07806 short chain dehydrogenase; Provisional
Probab=74.79 E-value=32 Score=27.31 Aligned_cols=106 Identities=8% Similarity=-0.017 Sum_probs=50.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChH-HHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQ-EIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
++++||=.|+. |.++..+++.. +.+|++++.+.. .. +.........+ .++..+..|..+....
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~-~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRA-NKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 56788888864 44555554432 678888876542 22 22222222111 1223334444332110
Q ss_pred CCCCccEEEEcccccCC----------cChHHHHHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYV----------KQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~----------~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.-+..|+++.+...... .+......+++.+.+.++.+|++++.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 01357877765432110 01112335666677766667777665
No 393
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.19 E-value=30 Score=28.85 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHHHHHHHhhccCcccCCeEEEeCCCCcHHHHH----HHHhCCCeEEEEeCCh
Q 026036 62 TFSFAEWLMHHREWIERRRCIELGSGTGALAIF----LRKAMNLDITTSDYND 110 (244)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~----~a~~~~~~v~~~D~~~ 110 (244)
..-+.+.+.......+++++|=+|+| |. +.+ ++..+..+|+.++.+.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAG-Ga-grAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAG-GA-ATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCc-HH-HHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344444433333467889999986 42 322 3333344699999885
No 394
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.09 E-value=43 Score=27.45 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=52.4
Q ss_pred ccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEE
Q 026036 76 IERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILA 153 (244)
Q Consensus 76 ~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~ 153 (244)
.++.+||=.|+ +.|.....+++..+.+|++++.+++.. +.++. .+.. ..+ ....+ ...+.+|+++.
T Consensus 131 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~~---~~~-~~~~~---~~~~~~d~vl~ 198 (305)
T cd08270 131 LLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARA-EGLRE----LGAA---EVV-VGGSE---LSGAPVDLVVD 198 (305)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCc---EEE-ecccc---ccCCCceEEEE
Confidence 35788888887 355555666777788999998877654 44432 1221 000 00001 11235888874
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ . . ..+....+.++++|+++..
T Consensus 199 --~~---g--~---~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 199 --SV---G--G---PQLARALELLAPGGTVVSV 221 (305)
T ss_pred --CC---C--c---HHHHHHHHHhcCCCEEEEE
Confidence 33 1 1 3456678889999987765
No 395
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=73.99 E-value=29 Score=29.00 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=53.7
Q ss_pred CcccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEE
Q 026036 74 EWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLI 151 (244)
Q Consensus 74 ~~~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I 151 (244)
...++.+||=.|++ .|...+.+++..+.+++.++.+++.. +.++.. ...-+... .+.+..... +.+|++
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~-~~~~~~-~~~~~~~~------~~~~~v~~~-~~~d~~ 229 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKA-KIVSKY-ADYVIVGS------KFSEEVKKI-GGADIV 229 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHH-HHHhcCch------hHHHHHHhc-CCCcEE
Confidence 45577888888873 56666777777789999999887654 333322 11011000 000000001 247888
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+. +. . . ..+..+.+.++++|+++..
T Consensus 230 ld--~~---g--~---~~~~~~~~~l~~~G~~v~~ 254 (334)
T PRK13771 230 IE--TV---G--T---PTLEESLRSLNMGGKIIQI 254 (334)
T ss_pred EE--cC---C--h---HHHHHHHHHHhcCCEEEEE
Confidence 74 32 1 1 2355677888899997765
No 396
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.85 E-value=5.6 Score=35.44 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------CCCC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------IPNP 146 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 146 (244)
.+..+|=+|=|.|.+...+.... ..++++++++++++ +.++.+...-.- . .......+.++ ..+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l-~va~q~f~f~q~---~-r~~V~i~dGl~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML-EVATQYFGFMQS---D-RNKVHIADGLDFLQRTAKSQQEDI 369 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHh-hccHhhhchhhh---h-hhhhhHhhchHHHHHHhhcccccc
Confidence 45577888888888887775554 47899999999987 555443221100 0 00011111111 1345
Q ss_pred CccEEEE----cccccC-CcChH--HHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILA----SDILLY-VKQYS--NLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~----~~~l~~-~~~~~--~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||+++. .| ... ....+ -...++..+...+.|.|.+++.
T Consensus 370 ~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 370 CPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred CCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 7898775 22 100 00111 1236778888999999988765
No 397
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.18 E-value=45 Score=26.90 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=22.9
Q ss_pred cCCeEEEeCCCC-cHHHHHHHHhC---CCeEEEEeCC
Q 026036 77 ERRRCIELGSGT-GALAIFLRKAM---NLDITTSDYN 109 (244)
Q Consensus 77 ~~~~VLdlG~G~-G~~~~~~a~~~---~~~v~~~D~~ 109 (244)
.++.+|=.|+++ +.++..+++.+ +.+|+.++.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 567889889873 55566655544 7788888654
No 398
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.08 E-value=14 Score=32.31 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=42.1
Q ss_pred CeEEEeCCCCcHHHHHH----HHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCccEEE
Q 026036 79 RRCIELGSGTGALAIFL----RKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLIL 152 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~----a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~I~ 152 (244)
.+||=||| |.++... ++.+..+|+..|-+.+.+ +.+..+.. .++..+.+|..+. +......+|+|+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~-~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKC-ARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEE
Confidence 57899999 4444433 333347899999997665 33332221 1445666666543 111234569998
Q ss_pred Eccccc
Q 026036 153 ASDILL 158 (244)
Q Consensus 153 ~~~~l~ 158 (244)
+.-..|
T Consensus 74 n~~p~~ 79 (389)
T COG1748 74 NAAPPF 79 (389)
T ss_pred EeCCch
Confidence 866653
No 399
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.98 E-value=14 Score=31.59 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=52.9
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee---cCCCC-CCCCCC
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS---WGDAF-PIPNPD 147 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~ 147 (244)
...++.+||=.|+| .|..++.+++..+. .|+++|.++... +.++. . +.. ..+... ..+.+ ......
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~-~~~~~-~---g~~---~~i~~~~~~~~~~v~~~~~~~ 254 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRL-ELAKE-L---GAT---HVINPKEEDLVAAIREITGGG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-c---CCc---EEecCCCcCHHHHHHHHhCCC
Confidence 34567888888764 35555666666676 699999988654 33332 1 110 001000 00000 011245
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+|+-. . . .+ ..+..+.+.++++|+++..
T Consensus 255 ~d~vld~--~---g-~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 255 VDYALDT--T---G-VP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CcEEEEC--C---C-Cc---HHHHHHHHHhccCCEEEEe
Confidence 8988752 1 1 12 3456678888999987765
No 400
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.85 E-value=48 Score=26.70 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=25.8
Q ss_pred ccCCeEEEeCCCC-cHHHHHHHHhC---CCeEEEEeCChH
Q 026036 76 IERRRCIELGSGT-GALAIFLRKAM---NLDITTSDYNDQ 111 (244)
Q Consensus 76 ~~~~~VLdlG~G~-G~~~~~~a~~~---~~~v~~~D~~~~ 111 (244)
.+++.+|=.|+++ +.++..+++.+ +.+|+.++.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~ 47 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDK 47 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChh
Confidence 4678899999876 35666555543 778999988754
No 401
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=72.53 E-value=33 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=21.8
Q ss_pred CeEEEeCCCCcH--HHHHHHHhCCCeEEEEeCChHHH
Q 026036 79 RRCIELGSGTGA--LAIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 79 ~~VLdlG~G~G~--~~~~~a~~~~~~v~~~D~~~~~l 113 (244)
.+|.=+|+|.=. ++..++.. +.+|++.|.+++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l 39 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEIL 39 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHH
Confidence 356677777322 22333333 67899999999876
No 402
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.02 E-value=29 Score=28.03 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=25.1
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhC---CCeEEEEeCCh
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAM---NLDITTSDYND 110 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~---~~~v~~~D~~~ 110 (244)
..++++|=.|+| ++.++..+++.. +.+|+.++.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 356789999985 566666666543 77899998764
No 403
>PRK06128 oxidoreductase; Provisional
Probab=71.91 E-value=44 Score=27.69 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=21.9
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCCh
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYND 110 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~ 110 (244)
.++++||=.|++ |.++..+++.+ +.+|+.+..+.
T Consensus 53 l~~k~vlITGas-~gIG~~~a~~l~~~G~~V~i~~~~~ 89 (300)
T PRK06128 53 LQGRKALITGAD-SGIGRATAIAFAREGADIALNYLPE 89 (300)
T ss_pred cCCCEEEEecCC-CcHHHHHHHHHHHcCCEEEEEeCCc
Confidence 357788888864 44455554443 77888877654
No 404
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.76 E-value=55 Score=27.77 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=42.3
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.++++||=.|++ |.++..+++.. +.+|+.++.+++.+ +.....+...+. ++..+..|..+....
T Consensus 6 l~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l-~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 6 IGRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGL-EALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence 356677777754 44454444333 77899999987665 333333332221 233444555442111
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
.-++.|+++.+-..
T Consensus 82 ~~g~iD~lInnAg~ 95 (334)
T PRK07109 82 ELGPIDTWVNNAMV 95 (334)
T ss_pred HCCCCCEEEECCCc
Confidence 12468988876654
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=71.62 E-value=3.8 Score=31.76 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=17.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEee
Q 026036 162 QYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 162 ~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+...+..+++.+.+.++++. +++.
T Consensus 95 Dls~v~~a~~~i~~~l~~~~-lvV~ 118 (185)
T PF03721_consen 95 DLSYVESAIESIAPVLRPGD-LVVI 118 (185)
T ss_dssp ETHHHHHHHHHHHHHHCSCE-EEEE
T ss_pred cHHHHHHHHHHHHHHHhhcc-eEEE
Confidence 34567788999999998854 4443
No 406
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.62 E-value=19 Score=29.84 Aligned_cols=99 Identities=11% Similarity=0.155 Sum_probs=47.2
Q ss_pred eEEEeCCCCcH--HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHh---c-----CCCCC-----cceEeeecCCCCCCC
Q 026036 80 RCIELGSGTGA--LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTT---N-----GITPA-----LPHIKHSWGDAFPIP 144 (244)
Q Consensus 80 ~VLdlG~G~G~--~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~---~-----~~~~~-----~~~~~~~~~~~~~~~ 144 (244)
+|.=||+|.=. ++..++.. +.+|+..|.+++.+ +.+...... . .+... ...+. ..+.....
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~--~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLS--YSLDLKAA 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE--EeCcHHHh
Confidence 56667765322 22233332 77899999999876 333321110 0 11000 00011 11111111
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
....|+|+.+-+ +........+.++.+.++|+..+++.
T Consensus 79 ~~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 VADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred hcCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 235788886422 22322336667788888887655443
No 407
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.41 E-value=43 Score=28.11 Aligned_cols=154 Identities=14% Similarity=0.049 Sum_probs=80.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCC--CCcceEeee-----cCCCCC---CCCCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGIT--PALPHIKHS-----WGDAFP---IPNPD 147 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~---~~~~~ 147 (244)
-..|+-||||-=.-+.-+-...+.+|.-+|..+. + +..++.....+.. .+...+..+ |...+. +....
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pev-i-~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEV-I-EFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcHH-H-HHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 3689999998654333332111456777777653 3 5555555544432 123333333 332222 22334
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCC---CCCCCCe--EEE-eeeeccCccchhhHH
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGT---EGLPWPA--FLM-SWRRRIGKEDETIFF 221 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~---~~~~~~~--~~~-~~~~~~~~~~~~~~~ 221 (244)
.-++++-.++.+ ...+...+++..+...+.||-.++............ ....... +.. .....+...+..+..
T Consensus 171 pt~~iaEGLl~Y-L~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 171 PTLWIAEGLLMY-LPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CeEEEecccccc-CCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 557888777744 455677789999999887776655553211111100 0000000 000 011222223457888
Q ss_pred HHHhhcCCeEEEe
Q 026036 222 TSCENAGLEVKHL 234 (244)
Q Consensus 222 ~~l~~~Gf~v~~~ 234 (244)
..+.+.|+.....
T Consensus 250 ~~l~~~g~~~~~~ 262 (297)
T COG3315 250 TWLAERGWRSTLN 262 (297)
T ss_pred HHHHhcCEEEEec
Confidence 8999999987765
No 408
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=71.31 E-value=25 Score=29.03 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=41.3
Q ss_pred eEEEeCCCC--cHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccc
Q 026036 80 RCIELGSGT--GALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDIL 157 (244)
Q Consensus 80 ~VLdlG~G~--G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l 157 (244)
+|.=||+|. |.++..+.+. +.+|++.|.+++.+ +.+... +. +... . .... .....|+|+.+-..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~-~~a~~~----g~---~~~~---~-~~~~-~~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTC-ERAIER----GL---VDEA---S-TDLS-LLKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHHHC----CC---cccc---c-CCHh-HhcCCCEEEEcCCH
Confidence 344456552 2233333333 67899999998765 333221 11 0000 0 1111 12357888875332
Q ss_pred cCCcChHHHHHHHHHHHHhcCCCC
Q 026036 158 LYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 158 ~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
....+.++++...++++.
T Consensus 68 ------~~~~~~~~~l~~~l~~~~ 85 (279)
T PRK07417 68 ------GLLLPPSEQLIPALPPEA 85 (279)
T ss_pred ------HHHHHHHHHHHHhCCCCc
Confidence 334466777777777664
No 409
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=70.87 E-value=8.1 Score=29.06 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcccccCCcCh
Q 026036 87 GTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASDILLYVKQY 163 (244)
Q Consensus 87 G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~~~ 163 (244)
|.|..+..+++.. +.+|++.|.+++.. +.+... +. ... +.........|+|++. + .+.
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d~~~~~~-~~~~~~----g~----~~~-----~s~~e~~~~~dvvi~~--v---~~~ 68 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYDRSPEKA-EALAEA----GA----EVA-----DSPAEAAEQADVVILC--V---PDD 68 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEESSHHHH-HHHHHT----TE----EEE-----SSHHHHHHHBSEEEE---S---SSH
T ss_pred chHHHHHHHHHHHHhcCCeEEeeccchhhh-hhhHHh----hh----hhh-----hhhhhHhhcccceEee--c---ccc
Confidence 4456665555443 78899999998765 322211 11 011 1111111235888873 2 334
Q ss_pred HHHHHHHHH--HHHhcCCCC
Q 026036 164 SNLIKSLSV--LLKSYKPKD 181 (244)
Q Consensus 164 ~~l~~~l~~--~~~~lk~gG 181 (244)
++....+.. +...+++|.
T Consensus 69 ~~v~~v~~~~~i~~~l~~g~ 88 (163)
T PF03446_consen 69 DAVEAVLFGENILAGLRPGK 88 (163)
T ss_dssp HHHHHHHHCTTHGGGS-TTE
T ss_pred hhhhhhhhhhHHhhccccce
Confidence 555566666 777776764
No 410
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=70.82 E-value=13 Score=31.07 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=48.0
Q ss_pred cCCeEEEe--CC-CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-C-CCCCCccEE
Q 026036 77 ERRRCIEL--GS-GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 151 (244)
Q Consensus 77 ~~~~VLdl--G~-G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~I 151 (244)
++.++|=+ |+ +.|..++.+|+..+.+|++++.+++.. +.++. .+....+.....++.+.. . .....+|+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~-~~~~~----~g~~~~i~~~~~~~~~~v~~~~~~~~~d~v 216 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQV-DLLKK----IGAEYVLNSSDPDFLEDLKELIAKLNATIF 216 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHH----cCCcEEEECCCccHHHHHHHHhCCCCCcEE
Confidence 45555554 33 345555666777788999999887654 44433 122100000000010000 0 112358988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+- ++ . . .......+.++++|+++..
T Consensus 217 id--~~---g--~---~~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 217 FD--AV---G--G---GLTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EE--CC---C--c---HHHHHHHHhhCCCCEEEEE
Confidence 74 33 1 1 2233456778899998765
No 411
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.72 E-value=15 Score=31.48 Aligned_cols=46 Identities=22% Similarity=0.138 Sum_probs=34.6
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHH
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAM-NLDITTSDYNDQEIEDNIAY 119 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~ 119 (244)
....+|.+|-=+||| .|+.++.-|+.. ..+++++|++++.+ +.+++
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~ 228 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKK 228 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHh
Confidence 346688999999985 677776666554 66799999999876 55544
No 412
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=70.66 E-value=26 Score=29.57 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=48.8
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC-CCCCCccEEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP-IPNPDWDLIL 152 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~ 152 (244)
.++.+||=.|+| .|..+..+++..+. +|++++-+++.. +.++.. +....+......+..... ...+.+|+|+
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRL-ELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEE
Confidence 467788777764 24455556666677 788887666543 332221 111000000000000000 1123689888
Q ss_pred EcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 153 ASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 153 ~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.+-. .. ..+..+.+.|+++|+++..
T Consensus 237 d~~g------~~---~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 237 EMSG------NP---KAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred ECCC------CH---HHHHHHHHHhccCCEEEEE
Confidence 6211 11 3455667888999998754
No 413
>PRK10083 putative oxidoreductase; Provisional
Probab=70.60 E-value=31 Score=28.91 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=49.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHh-CCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKA-MNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~-~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 149 (244)
....++.+||=.|+| .|..++.+++. .+. .++++|.+++.. +.++.. +....+......+.+.+......+|
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~-~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL-ALAKES----GADWVINNAQEPLGEALEEKGIKPT 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHh----CCcEEecCccccHHHHHhcCCCCCC
Confidence 345678888888864 33344445553 355 588899887654 433321 1110000000000000111111245
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+|+- +. ..+ ..+....+.++++|+++..
T Consensus 231 ~vid--~~----g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 231 LIID--AA----CHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEEE--CC----CCH---HHHHHHHHHhhcCCEEEEE
Confidence 6654 22 112 4566678899999998765
No 414
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=70.04 E-value=27 Score=29.51 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=50.7
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CCCCCCccEEEE
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~I~~ 153 (244)
++.+||=.|+| .|.....+|+..+. +|++++.+++.. +.+++. +....+......+.+.+ ....+.+|+++.
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vid 249 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKL-EAAKAA----GADVVVNGSDPDAAKRIIKAAGGGVDAVID 249 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHh----CCcEEecCCCccHHHHHHHHhCCCCcEEEE
Confidence 67788888764 44445556666676 799999887654 444321 22100000000000000 011125888875
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
. . . .. ..+....+.|+++|+++..
T Consensus 250 ~--~---g-~~---~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 250 F--V---N-NS---ATASLAFDILAKGGKLVLV 273 (350)
T ss_pred C--C---C-CH---HHHHHHHHHhhcCCeEEEE
Confidence 2 2 1 12 4566778888999998754
No 415
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=69.74 E-value=30 Score=26.32 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHhhccCcccCCeEEEeCCC-C-cH-HHHHHHHhCCCeEEEEeCChH
Q 026036 64 SFAEWLMHHREWIERRRCIELGSG-T-GA-LAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 64 ~l~~~~~~~~~~~~~~~VLdlG~G-~-G~-~~~~~a~~~~~~v~~~D~~~~ 111 (244)
...+.+........+++||=+|+| + |. .+..+.. .+.+|+.++-..+
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~~~ 79 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSKTK 79 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECCch
Confidence 333444444556789999999999 3 76 4444444 3668999887654
No 416
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=69.07 E-value=26 Score=31.22 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=23.4
Q ss_pred cCCeEEEeCCCCcHHHH-HHHHhCCCeEEEEeCChH
Q 026036 77 ERRRCIELGSGTGALAI-FLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~-~~a~~~~~~v~~~D~~~~ 111 (244)
.+++|+=+|.|....++ .+....+.+|++.|.++.
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 46789999887543343 222334789999998753
No 417
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=68.43 E-value=30 Score=31.46 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=55.6
Q ss_pred CCeEEEeCCCCcHHHHHH---HHhC--CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEE
Q 026036 78 RRRCIELGSGTGALAIFL---RKAM--NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLIL 152 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~---a~~~--~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~ 152 (244)
-..|.=+|+|-|-+.-.. |+.. ..++++++.+++++......|. .....++..+..|... .+.+..+.|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~--~~W~~~Vtii~~DMR~-w~ap~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF--ECWDNRVTIISSDMRK-WNAPREQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch--hhhcCeeEEEeccccc-cCCchhhccchH
Confidence 346888999999776443 3332 4469999999987632222222 2333344444433221 111235788887
Q ss_pred Ec--ccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 153 AS--DILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 153 ~~--~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
+- ..+=..+-.+ +-|..+.+.|||.|..+
T Consensus 445 SELLGSFGDNELSP---ECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 445 SELLGSFGDNELSP---ECLDGAQKFLKPDGISI 475 (649)
T ss_pred HHhhccccCccCCH---HHHHHHHhhcCCCceEc
Confidence 61 1110112223 56667788999998543
No 418
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=68.25 E-value=23 Score=23.13 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=22.1
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHH-H--HHHHHhCCCeEEEEeCC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGAL-A--IFLRKAMNLDITTSDYN 109 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~-~--~~~a~~~~~~v~~~D~~ 109 (244)
..+|+.......-.++||=+||-+|.- + +.++...++..+++-..
T Consensus 26 qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 26 QIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 334555555553347999999988743 2 33443347778777654
No 419
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.25 E-value=30 Score=29.02 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=52.9
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe-eecCCCCCCCCCCcc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKA-MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK-HSWGDAFPIPNPDWD 149 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~-~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~fD 149 (244)
....++.+||=.|+| .|..++.+++. .+.+|++++.+++.. +.+++. +....+.... ..+.+.+....+.+|
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~-~~~~~~----g~~~v~~~~~~~~~~~~v~~~~~~~d 232 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKL-ALAKEV----GADLTINSKRVEDVAKIIQEKTGGAH 232 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHH-HHHHHc----CCcEEecccccccHHHHHHHhcCCCc
Confidence 345678888888863 44555666775 488999999888754 444321 2210000000 000000000112467
Q ss_pred EEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 150 LILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 150 ~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+++-. .. .. ..+....+.++++|+++..
T Consensus 233 ~vi~~-~~-----~~---~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 233 AAVVT-AV-----AK---AAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred EEEEe-CC-----CH---HHHHHHHHhccCCCEEEEE
Confidence 44321 21 12 4567778889999998765
No 420
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=68.12 E-value=14 Score=31.17 Aligned_cols=96 Identities=17% Similarity=0.210 Sum_probs=55.6
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCccEEEE
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDLILA 153 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~I~~ 153 (244)
+..+|.=||.| .|..+--+|...+++|+-.|+|.+-+ ..+.. ..+. .+.....+. +...-.+.|++|+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl-~~ldd---~f~~-----rv~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRL-RQLDD---LFGG-----RVHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHH-hhhhH---hhCc-----eeEEEEcCHHHHHHHhhhccEEEE
Confidence 44577888887 56666666666699999999997654 22211 1111 112222221 1122346899998
Q ss_pred cccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 154 SDILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 154 ~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
.=.+ --...+. -..+++.+.+|||+.++
T Consensus 238 aVLI-pgakaPk--Lvt~e~vk~MkpGsViv 265 (371)
T COG0686 238 AVLI-PGAKAPK--LVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEe-cCCCCce--ehhHHHHHhcCCCcEEE
Confidence 6554 3333333 44577888899987543
No 421
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.05 E-value=51 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=23.8
Q ss_pred ccCCeEEEeCCCC-cHHHHHHHHhC---CCeEEEEeCCh
Q 026036 76 IERRRCIELGSGT-GALAIFLRKAM---NLDITTSDYND 110 (244)
Q Consensus 76 ~~~~~VLdlG~G~-G~~~~~~a~~~---~~~v~~~D~~~ 110 (244)
..++.+|=.|+++ +.++..+++.+ +.+|+.++.+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 3577888888764 45555555443 77899888764
No 422
>PRK05650 short chain dehydrogenase; Provisional
Probab=67.91 E-value=49 Score=26.76 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=38.3
Q ss_pred eEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------CCCC
Q 026036 80 RCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------PNPD 147 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 147 (244)
+||=.|+ +|.++..+++.. +.+|+.++.+.+.+.+ ........+ .++..+..|..+.... ..+.
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~-~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEE-TLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 555555554443 7789999988765422 222222211 1233444454432110 1246
Q ss_pred ccEEEEcccc
Q 026036 148 WDLILASDIL 157 (244)
Q Consensus 148 fD~I~~~~~l 157 (244)
+|+++.+...
T Consensus 78 id~lI~~ag~ 87 (270)
T PRK05650 78 IDVIVNNAGV 87 (270)
T ss_pred CCEEEECCCC
Confidence 8988886554
No 423
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=67.88 E-value=21 Score=26.63 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=26.5
Q ss_pred HHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCC
Q 026036 66 AEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYN 109 (244)
Q Consensus 66 ~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~ 109 (244)
-+|........+ .-|||+|=|.|..=-++.... +.+|++.|-.
T Consensus 18 L~~a~~~v~~~~-G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 18 LNWAAAQVAGLP-GPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred HHHHHHHhcCCC-CceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 345544444445 499999999998888887766 7789999963
No 424
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.76 E-value=50 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCce
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQ 183 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~ 183 (244)
...|+|+-+-. +....-..+++++.+.++|+..+
T Consensus 81 ~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il 114 (282)
T PRK05808 81 KDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAIL 114 (282)
T ss_pred ccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEE
Confidence 35788877421 22333347888888888887655
No 425
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.62 E-value=17 Score=31.31 Aligned_cols=100 Identities=13% Similarity=0.091 Sum_probs=54.2
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe--eecCCCC-CCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIK--HSWGDAF-PIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~ 147 (244)
....+|.+||=.||| .|..++.+|+..+. +|+++|.+++.+ +.+++. +....+.... .++.+.. ....+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~-~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKF-ELAKKL----GATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHHHHh----CCCeEEcccccchhHHHHHHHHhCCC
Confidence 345678899999875 45555666777676 799999988764 444331 2210000000 0000000 001125
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
+|+|+- +. . .+ ..+....+.++++ |++++.
T Consensus 256 ~d~vid--~~---G-~~---~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 256 VDYSFE--CI---G-NV---NVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCEEEE--CC---C-CH---HHHHHHHHHhhcCCCeEEEE
Confidence 788774 22 1 12 4556667788886 987765
No 426
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=67.35 E-value=55 Score=28.61 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=12.2
Q ss_pred CCeEEEEeCChHHH
Q 026036 100 NLDITTSDYNDQEI 113 (244)
Q Consensus 100 ~~~v~~~D~~~~~l 113 (244)
+.+|+++|++++.+
T Consensus 22 G~~VigvD~d~~kv 35 (388)
T PRK15057 22 NHEVVALDILPSRV 35 (388)
T ss_pred CCcEEEEECCHHHH
Confidence 67899999999866
No 427
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.13 E-value=48 Score=29.74 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=23.9
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChH
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
...+++|+=+|+| +|.....+....+.+|++.|.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 49 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET 49 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH
Confidence 3466789999986 554222223334679999997653
No 428
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=66.83 E-value=22 Score=30.43 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=51.4
Q ss_pred cccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC--CCCCCCccE
Q 026036 75 WIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF--PIPNPDWDL 150 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~fD~ 150 (244)
..++.+||=.|+| .|.....+++..+.+ |++++.+++.. +.++. . +....+......+.+.+ ......+|+
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~-~~~~~-~---g~~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKL-AKAKE-L---GATHTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCceEecCCcccHHHHHHHHhCCCCCCE
Confidence 3567788877653 444445556666777 99998887654 44432 1 12100000000110000 011246899
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ++ .. . ..+..+.+.++++|+++..
T Consensus 260 vld--~v---g~-~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 260 VVE--AL---GK-P---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred EEE--eC---CC-H---HHHHHHHHHHhcCCEEEEE
Confidence 885 33 11 1 2456677899999987765
No 429
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=66.78 E-value=17 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.286 Sum_probs=30.5
Q ss_pred CccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 147 DWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 147 ~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.||+++. |...+.......+.++++.+.|||.+++.
T Consensus 37 ~~d~~l~----~~pK~~~e~e~qLa~ll~~~~~g~~i~v~ 72 (300)
T COG2813 37 DFDAVLL----YWPKHKAEAEFQLAQLLARLPPGGEIVVV 72 (300)
T ss_pred CCCEEEE----EccCchHHHHHHHHHHHhhCCCCCeEEEE
Confidence 6999987 56667777788899999999999988877
No 430
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=66.62 E-value=24 Score=29.73 Aligned_cols=97 Identities=21% Similarity=0.183 Sum_probs=50.0
Q ss_pred ccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-C-CCCCCccEE
Q 026036 76 IERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDWDLI 151 (244)
Q Consensus 76 ~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~fD~I 151 (244)
.++.+||=.|+| .|..++.+++..+.+ |++++.++... +.++.. +....+.....++.+.+ . .....+|+|
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~-~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRL-ELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-HHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE
Confidence 467777776654 344445566666776 88997776543 333221 11100000000010100 0 112458988
Q ss_pred EEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 152 LASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 152 ~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+-. . . .. ..+..+.+.|+++|+++..
T Consensus 235 ld~--~---g-~~---~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 235 LEM--S---G-AP---KALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred EEC--C---C-CH---HHHHHHHHhhcCCCEEEEE
Confidence 763 1 1 12 4466778889999988665
No 431
>PLN02740 Alcohol dehydrogenase-like
Probab=66.13 E-value=17 Score=31.38 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=53.8
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee-----cCCCC-CCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS-----WGDAF-PIP 144 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~ 144 (244)
....+|.+||=+|+| .|..++.+|+..+. +|+++|.+++.+ +.+++ .+... .+... +.+.. ...
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~-~~a~~----~Ga~~---~i~~~~~~~~~~~~v~~~~ 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKF-EKGKE----MGITD---FINPKDSDKPVHERIREMT 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHH-HHHHH----cCCcE---EEecccccchHHHHHHHHh
Confidence 345678899999874 44555556666676 699999988755 44432 12210 11100 10000 011
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
.+.+|+|+-.-. .+ ..+......+++| |++++.
T Consensus 266 ~~g~dvvid~~G------~~---~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 266 GGGVDYSFECAG------NV---EVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCCCCEEEECCC------Ch---HHHHHHHHhhhcCCCEEEEE
Confidence 125898875211 12 4555666778886 887665
No 432
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=66.09 E-value=14 Score=30.93 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=28.5
Q ss_pred cccCCeEEEeCCCCcHHHHHHHHhCCCeEEEEeCChHHH
Q 026036 75 WIERRRCIELGSGTGALAIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 75 ~~~~~~VLdlG~G~G~~~~~~a~~~~~~v~~~D~~~~~l 113 (244)
...|.+|.-+|+|--.+.-.+++ ...+|.+||+++..+
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahi 98 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHI 98 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHH
Confidence 34678999999986544445544 388999999999765
No 433
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=66.09 E-value=68 Score=28.30 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=20.8
Q ss_pred CeEEEeCCCCcHHH--HHHHHhCCCeEEEEeCChHHH
Q 026036 79 RRCIELGSGTGALA--IFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 79 ~~VLdlG~G~G~~~--~~~a~~~~~~v~~~D~~~~~l 113 (244)
.+|-=+|.|.-... ..+++. +.+|+++|.+++.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v 39 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAV 39 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 35666666633222 223332 68899999998765
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=65.79 E-value=8.1 Score=28.36 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=24.8
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+|+..- . ..++...++.+.+.+.++..+++.
T Consensus 65 ~~~~D~viv~v-----K-a~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 65 AGPYDLVIVAV-----K-AYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp HSTESEEEE-S-----S-GGGHHHHHHHHCTGEETTEEEEEE
T ss_pred cCCCcEEEEEe-----c-ccchHHHHHHHhhccCCCcEEEEE
Confidence 45799988741 1 234557888899999998766655
No 435
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=65.64 E-value=62 Score=27.21 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=50.2
Q ss_pred CcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC--CCCCCCCccE
Q 026036 74 EWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA--FPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fD~ 150 (244)
...++.+||=.|+| .|.....+++..+.+|+.++.+++.. +.++. . +.. . .++..+. .......+|+
T Consensus 166 ~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~~----~-vi~~~~~~~~~~~~~~~d~ 235 (337)
T cd05283 166 GVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKK-EDALK-L---GAD----E-FIATKDPEAMKKAAGSLDL 235 (337)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHH-HHHHH-c---CCc----E-EecCcchhhhhhccCCceE
Confidence 34567777767653 34444455666688999999887654 44432 1 110 0 0111110 0111346888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+. ++ .. . ..+..+.+.++++|+++..
T Consensus 236 v~~--~~---g~-~---~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 236 IID--TV---SA-S---HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred EEE--CC---CC-c---chHHHHHHHhcCCCEEEEE
Confidence 884 32 11 1 2345567888899987765
No 436
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.42 E-value=58 Score=25.70 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=24.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
++++||=.|+ +|.++..+++.. +.+|++++.+++.+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEA 44 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678886664 566666665543 67899998887654
No 437
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=64.90 E-value=44 Score=26.38 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=41.8
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
.+++||=.|+ +|.++..+++.. +.+|++++-++..+ ..........+ ..+..+..++.+.... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~-~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDA-AATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4668886665 566666655443 67899999886554 22222222221 1233444555442110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
.+.+|+|+.+...
T Consensus 81 ~~~~d~vi~~ag~ 93 (251)
T PRK12826 81 FGRLDILVANAGI 93 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1368988887654
No 438
>PTZ00357 methyltransferase; Provisional
Probab=64.85 E-value=58 Score=30.94 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=23.3
Q ss_pred eEEEeCCCCcHHHHH---HHHhC--CCeEEEEeCChHH
Q 026036 80 RCIELGSGTGALAIF---LRKAM--NLDITTSDYNDQE 112 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~---~a~~~--~~~v~~~D~~~~~ 112 (244)
.|+=+|+|-|-+--. +++.. ..+|++++.++.+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpA 740 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPA 740 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcch
Confidence 589999999976432 33332 4579999999653
No 439
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=64.49 E-value=22 Score=30.38 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=53.6
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCCe-EEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-CC-CCCCc
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNLD-ITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-PI-PNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~-v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~f 148 (244)
....++.+||=.|+| .|...+.+++..+.+ |++++.++... +.++. . +....+.....++...+ .. ....+
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~-~~~~~-~---g~~~vv~~~~~~~~~~l~~~~~~~~v 252 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKL-ELARR-F---GATHTVNASEDDAVEAVRDLTDGRGA 252 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHH-HHHHH-h---CCeEEeCCCCccHHHHHHHHcCCCCC
Confidence 345577888888764 455556666666775 99998887643 33321 1 12100000000000000 01 12458
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++.. . . .. ..+....+.++++|+++..
T Consensus 253 d~vld~--~---~-~~---~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 253 DYAFEA--V---G-RA---ATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CEEEEc--C---C-Ch---HHHHHHHHHhhcCCeEEEE
Confidence 988752 2 1 11 4456678889999998765
No 440
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.45 E-value=33 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=22.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHh---CCCeEEEEeCCh
Q 026036 77 ERRRCIELGSGTGALAIFLRKA---MNLDITTSDYND 110 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~ 110 (244)
.+++|+=+|+|. .+..+|+. .+.+|+++|.+.
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 567899998776 33344333 288999999985
No 441
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=64.08 E-value=37 Score=29.04 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=52.0
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee--ecCCCC-CCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 147 (244)
....++.+||=.|+| .|..+..+|+..+. .|++++.+++.. +.+++ . +....+..... ++.+.+ ....+.
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~-~~~~~-~---g~~~~v~~~~~~~~~~~~l~~~~~~~ 253 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKF-EKAKQ-L---GATECINPRDQDKPIVEVLTEMTDGG 253 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH-h---CCCeecccccccchHHHHHHHHhCCC
Confidence 345678888888763 33444455666666 488999877654 44432 1 11100110000 000000 011235
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcC-CCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYK-PKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk-~gG~~~~~ 186 (244)
+|+|+-. . . .. ..+....+.++ ++|+++..
T Consensus 254 ~d~vid~--~---g-~~---~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 254 VDYAFEV--I---G-SA---DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred CcEEEEC--C---C-CH---HHHHHHHHHhccCCCEEEEE
Confidence 8988852 2 1 12 45566778888 99998765
No 442
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=64.05 E-value=70 Score=26.43 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=52.4
Q ss_pred CcccCCeEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-----C--CCC
Q 026036 74 EWIERRRCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-----F--PIP 144 (244)
Q Consensus 74 ~~~~~~~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~ 144 (244)
...++.+||=.|++ .|.....++...+.+|+.++.+++.. +.++.. +.. . .++..+. + ...
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~----~~~----~-~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL-ERAKEL----GAD----Y-VIDYRKEDFVREVRELTG 232 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHc----CCC----e-EEecCChHHHHHHHHHhC
Confidence 44577889988875 45555566666688999999887644 333221 110 0 0111110 0 011
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
...+|+++.+..- ..+..+.+.++++|+++..
T Consensus 233 ~~~~d~~i~~~g~----------~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 233 KRGVDVVVEHVGA----------ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCCcEEEECCcH----------HHHHHHHHHhhcCCEEEEE
Confidence 2358888864221 2345566788899987765
No 443
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.00 E-value=17 Score=28.36 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCCceEee
Q 026036 166 LIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 166 l~~~l~~~~~~lk~gG~~~~~ 186 (244)
+...+.++.|+|||||.+++.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 457889999999999987775
No 444
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=63.91 E-value=39 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=20.4
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCC
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKD 181 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG 181 (244)
...|+|+.+=++ ......++++...+++|.
T Consensus 63 ~~aD~VivavPi------~~~~~~l~~l~~~l~~g~ 92 (279)
T COG0287 63 AEADLVIVAVPI------EATEEVLKELAPHLKKGA 92 (279)
T ss_pred ccCCEEEEeccH------HHHHHHHHHhcccCCCCC
Confidence 357888876544 445577788887777764
No 445
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=63.87 E-value=33 Score=28.47 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=51.7
Q ss_pred cCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 77 ERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 77 ~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
.+.+||=.|+ +.|.....+|+..+.+|++++.+++.. +.++. .+....+.................+|+|+.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~~~v~~~~~~~~~~~~~~~~~~~d~vld- 219 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAA-DYLKK----LGAKEVIPREELQEESIKPLEKQRWAGAVD- 219 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHH-HHHHH----cCCCEEEcchhHHHHHHHhhccCCcCEEEE-
Confidence 3568888886 355555667777788999999887654 44432 122100000000000000111235888773
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++ . . ..+....+.++++|+++..
T Consensus 220 -~~---g--~---~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 220 -PV---G--G---KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred -CC---c--H---HHHHHHHHHhhcCCEEEEE
Confidence 33 1 1 3456678888999998766
No 446
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=63.62 E-value=55 Score=26.38 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=22.9
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhC---CCeEEEEeCC
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAM---NLDITTSDYN 109 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~---~~~v~~~D~~ 109 (244)
.++++|=.|++ ++.++..+++.+ +.+|+.++.+
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 56788888984 566666666554 6788777643
No 447
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.39 E-value=62 Score=26.54 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=54.7
Q ss_pred cccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCC---C-CCCCCCCc
Q 026036 75 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGD---A-FPIPNPDW 148 (244)
Q Consensus 75 ~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~f 148 (244)
..++.+||=.|+ +.|...+.+|+..+.+|+++..+++.. +.++. .+.. .+-....+ . ... ...+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~----~g~~----~~~~~~~~~~~~i~~~-~~~~ 209 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERA-ALLKE----LGAD----EVVIDDGAIAEQLRAA-PGGF 209 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh----cCCc----EEEecCccHHHHHHHh-CCCc
Confidence 456789988886 466777777887789999998887643 33322 1220 11000000 0 011 3468
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++. +. . . ..+....+.++++|+++..
T Consensus 210 d~vl~--~~---~--~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLE--LV---G--T---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEE--CC---C--h---HHHHHHHHHhccCCEEEEE
Confidence 98884 33 1 1 3456677889999997654
No 448
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=63.25 E-value=50 Score=27.30 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=45.8
Q ss_pred eEEEeCCCCcH--HHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEe--eecCCCCCCCCCCccEEEEcc
Q 026036 80 RCIELGSGTGA--LAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIK--HSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 80 ~VLdlG~G~G~--~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~fD~I~~~~ 155 (244)
+|+=+|+|.-. ++..+++. +.+|+.++.+++.+ +..+++ +....-.... ....+.... ...+|+|+..-
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~-~~~~~~----g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARRGAHL-DALNEN----GLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECChHHH-HHHHHc----CCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 56667776322 22333332 67899999876554 333322 2200000000 000111111 25689888743
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
-- .++...++.+...+.++..++..
T Consensus 75 k~------~~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 75 KA------YQLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cc------ccHHHHHHHHhhhcCCCCEEEEe
Confidence 32 23446777777777776555544
No 449
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=63.16 E-value=40 Score=30.14 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=42.8
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+++|+=+|=| +|.-+..+..+.+.+|++.|.++... ..........++ ....+....+....+|+|+-++
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~-~~~~~~~~~~~i-------~~~~g~~~~~~~~~~d~vV~SP 77 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPE-GLAAQPLLLEGI-------EVELGSHDDEDLAEFDLVVKSP 77 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCcc-chhhhhhhccCc-------eeecCccchhccccCCEEEECC
Confidence 37899999976 66665555556689999999887541 111111111122 1222211112234689999999
Q ss_pred cc
Q 026036 156 IL 157 (244)
Q Consensus 156 ~l 157 (244)
-+
T Consensus 78 Gi 79 (448)
T COG0771 78 GI 79 (448)
T ss_pred CC
Confidence 87
No 450
>PRK08655 prephenate dehydrogenase; Provisional
Probab=62.98 E-value=44 Score=29.73 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=19.7
Q ss_pred eEEEeCCCCcHHHHHHHHh---CCCeEEEEeCChHHH
Q 026036 80 RCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEI 113 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~~~l 113 (244)
+|.=+| |+|.+|..++.. .+.+|+++|.+++..
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHH
Confidence 455555 345555444433 256899999887643
No 451
>PRK06139 short chain dehydrogenase; Provisional
Probab=62.87 E-value=57 Score=27.66 Aligned_cols=77 Identities=9% Similarity=0.094 Sum_probs=42.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
++++||=.|++. .++..+++.. +.+|+.++.+++.+ +.....+...+. ++..+..|..+.... .
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l-~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEAL-QAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 566788777644 4454444433 78899999988765 333333332222 223344455432110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
.+..|+++.+-.+
T Consensus 82 ~g~iD~lVnnAG~ 94 (330)
T PRK06139 82 GGRIDVWVNNVGV 94 (330)
T ss_pred cCCCCEEEECCCc
Confidence 2568998887654
No 452
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=62.51 E-value=89 Score=25.89 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=25.3
Q ss_pred ccCCeEEEeCCCC-cHHH-HHHHHhCCCeEEEEeCChHHH
Q 026036 76 IERRRCIELGSGT-GALA-IFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 76 ~~~~~VLdlG~G~-G~~~-~~~a~~~~~~v~~~D~~~~~l 113 (244)
.++++||=||+|- |... ..++..+..+|+.++-+.+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka 162 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKL 162 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHH
Confidence 4678999999863 3332 334444456899999887544
No 453
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=62.39 E-value=53 Score=27.71 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=50.0
Q ss_pred eEEEeCCC--CcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHh-HHhcCCCCCcceEeeecCCCCCCCCCCccEEEEccc
Q 026036 80 RCIELGSG--TGALAIFLRKAMNLDITTSDYNDQEIEDNIAYN-STTNGITPALPHIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 80 ~VLdlG~G--~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
+|+=+|+| -|+++..+++.+ ..|+.+--++. + +..+++ ........+....... ...+.....+|+|+..-=
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~-~~l~~~GL~i~~~~~~~~~~~~~--~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-L-EALKKKGLRIEDEGGNFTTPVVA--ATDAEALGPADLVIVTVK 76 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-H-HHHHhCCeEEecCCCcccccccc--ccChhhcCCCCEEEEEec
Confidence 67778887 235566676664 66777666654 4 333332 1111111100000000 011122347999887321
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.-++..+++.+.+.+++...+++.
T Consensus 77 ------a~q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 77 ------AYQLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred ------cccHHHHHHHhhhcCCCCcEEEEE
Confidence 224558888899999888766555
No 454
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=62.37 E-value=54 Score=25.66 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=28.6
Q ss_pred CcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 74 EWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 74 ~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
...+|++|+=+|.| .++..+++.. +.+|+++|.+++.+
T Consensus 24 ~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~ 64 (200)
T cd01075 24 DSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAV 64 (200)
T ss_pred CCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 44678899999987 4665555443 88999999998765
No 455
>PRK06172 short chain dehydrogenase; Provisional
Probab=62.34 E-value=29 Score=27.66 Aligned_cols=77 Identities=6% Similarity=0.028 Sum_probs=41.4
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
++++||=.|++. .++..+++.. +.+|+.++.+++.+ +.........+ .++..+..|..+.... .
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGAKVVVADRDAAGG-EETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567888888644 4444444333 67899999987654 22222222211 2233444444432110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
.++.|+|+.+...
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 2467998886654
No 456
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=62.28 E-value=31 Score=28.56 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=52.5
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCC-C-CCCCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAF-P-IPNPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~f 148 (244)
....+|.+||=.|+ +.|..+..+|+..+.+++.+.-+.+.. +.++. . +....+......+.+.+ . .....+
T Consensus 135 ~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~-~~~~~-~---g~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (324)
T cd08292 135 LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGV-AELRA-L---GIGPVVSTEQPGWQDKVREAAGGAPI 209 (324)
T ss_pred hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHH-HHHHh-c---CCCEEEcCCCchHHHHHHHHhCCCCC
Confidence 34557888888875 256666677777788888886665543 33322 1 22100000000000000 0 112358
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+|+. +. .. ..+....+.++++|+++..
T Consensus 210 d~v~d--~~---g~-----~~~~~~~~~l~~~g~~v~~ 237 (324)
T cd08292 210 SVALD--SV---GG-----KLAGELLSLLGEGGTLVSF 237 (324)
T ss_pred cEEEE--CC---CC-----hhHHHHHHhhcCCcEEEEE
Confidence 99884 33 11 2235667889999998765
No 457
>PRK07890 short chain dehydrogenase; Provisional
Probab=61.93 E-value=26 Score=27.96 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=41.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------C
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---------P 144 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 144 (244)
++++||=.|+ +|.++..+++.. +.+|+.++.++..+ +.........+ .++..+..|..+.... .
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERL-DEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5678887776 444555444433 77899999987654 33332222111 1223444444432110 1
Q ss_pred CCCccEEEEcccc
Q 026036 145 NPDWDLILASDIL 157 (244)
Q Consensus 145 ~~~fD~I~~~~~l 157 (244)
-+..|+|+.+...
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1467988887654
No 458
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=60.54 E-value=64 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=25.6
Q ss_pred cccCCeEEEeCCC-CcHHH-HHHHHhCCCeEEEEeCChH
Q 026036 75 WIERRRCIELGSG-TGALA-IFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 75 ~~~~~~VLdlG~G-~G~~~-~~~a~~~~~~v~~~D~~~~ 111 (244)
..++++|+=+|.| +|..+ ..++...+.+|++.|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3466789999865 77653 3344445889999998753
No 459
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.85 E-value=91 Score=25.76 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=21.8
Q ss_pred eEEEeCCCCcHHHHH--HHHhCCCeEEEEeCChHHH
Q 026036 80 RCIELGSGTGALAIF--LRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~--~a~~~~~~v~~~D~~~~~l 113 (244)
+|-=||+|+-..+++ ++. .+.+|++.|.+++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l 39 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEAL 39 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHH
Confidence 566778774433333 333 367899999998765
No 460
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=59.10 E-value=33 Score=28.49 Aligned_cols=99 Identities=9% Similarity=0.028 Sum_probs=53.7
Q ss_pred CcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCCCCCccE
Q 026036 74 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIPNPDWDL 150 (244)
Q Consensus 74 ~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~ 150 (244)
...++.+||=.|+ +.|.....+++..+.+|++++.++... +.++... +....+.....++... .......+|+
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~-~~~~~~~---g~~~~~~~~~~~~~~~v~~~~~~~~d~ 217 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKC-RWLVEEL---GFDAAINYKTPDLAEALKEAAPDGIDV 217 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHhhc---CCceEEecCChhHHHHHHHhccCCceE
Confidence 3456778887774 356666667777788999998877543 4333211 1100000000000000 0011235888
Q ss_pred EEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 151 ILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 151 I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
++. +. . . ..+....+.++++|+++..
T Consensus 218 vi~--~~---g--~---~~~~~~~~~l~~~G~~v~~ 243 (329)
T cd05288 218 YFD--NV---G--G---EILDAALTLLNKGGRIALC 243 (329)
T ss_pred EEE--cc---h--H---HHHHHHHHhcCCCceEEEE
Confidence 874 33 1 1 3566778889999987754
No 461
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.90 E-value=36 Score=26.69 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=34.0
Q ss_pred ceeechHHHHHHH----HhhccCcccCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChHH
Q 026036 56 NFLWPGTFSFAEW----LMHHREWIERRRCIELGSG-TGALAIFLRKAMNLDITTSDYNDQE 112 (244)
Q Consensus 56 ~~~w~~~~~l~~~----~~~~~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~~ 112 (244)
..+|+-...++.. +.......++++||=+|+= +|.....+..+ .++|+.+|+.+.+
T Consensus 19 ~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~ 79 (254)
T COG4017 19 TRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFM 79 (254)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHH
Confidence 4455554444432 2222334577899999874 66544333333 8899999999875
No 462
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=58.90 E-value=1e+02 Score=25.54 Aligned_cols=51 Identities=25% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHHHHHhhccCcccCCeEEEeCCCC-cHH-HHHHHHhCCCeEEEEeCChHHH
Q 026036 63 FSFAEWLMHHREWIERRRCIELGSGT-GAL-AIFLRKAMNLDITTSDYNDQEI 113 (244)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~VLdlG~G~-G~~-~~~~a~~~~~~v~~~D~~~~~l 113 (244)
.-+.+-+.......++++|+=||||- |.. ...++..+..+|+.+|.+.+..
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka 164 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARA 164 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 33334443332234678999999974 332 2333444456899999987654
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=58.72 E-value=51 Score=27.58 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=44.0
Q ss_pred eEEEeCCCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhHHh-cCCCC-CcceEeeecCCCCCCCCCCccEEEEc
Q 026036 80 RCIELGSGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTT-NGITP-ALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 80 ~VLdlG~G~G~~~~~~a~~---~~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
+|.=+|+ |..+..++.. .+.+|+..|.+++.+ +.++..... ..... .... ...............|+|+..
T Consensus 3 kI~iiG~--G~mG~~~a~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~vi~~ 78 (325)
T PRK00094 3 KIAVLGA--GSWGTALAIVLARNGHDVTLWARDPEQA-AEINADRENPRYLPGIKLPD-NLRATTDLAEALADADLILVA 78 (325)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCC-CeEEeCCHHHHHhCCCEEEEe
Confidence 4555665 4444444332 267899999988655 333322100 00000 0000 000001111112357888774
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
=.- ......++.+...++++..++
T Consensus 79 v~~------~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 79 VPS------QALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred CCH------HHHHHHHHHHHhhcCCCCEEE
Confidence 222 345566777777777765443
No 464
>PRK12744 short chain dehydrogenase; Provisional
Probab=57.75 E-value=74 Score=25.42 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=19.2
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDY 108 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~ 108 (244)
.+++||=.|+ +|.++..+++.. +.+|+.++.
T Consensus 7 ~~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCcEEEEec
Confidence 4678887775 445565555544 567666654
No 465
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.64 E-value=41 Score=26.63 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=24.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
+++++|=.|+ +|.++..+++.. +.+|+.+|.++..+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~ 42 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKL 42 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5678888876 444454444332 67899999987654
No 466
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.21 E-value=76 Score=28.15 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEeCCC-CcHHHHHHHHhCCCeEEEEeCChH
Q 026036 80 RCIELGSG-TGALAIFLRKAMNLDITTSDYNDQ 111 (244)
Q Consensus 80 ~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~~ 111 (244)
+|+=+|.| +|..+..++...+.+|++.|..+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 56777876 444433333344889999998764
No 467
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.83 E-value=59 Score=27.27 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=47.4
Q ss_pred CCeEEEeCCCC-c-HHHHHHHHhCCCeEEEEeCChHHHHHHHHHhH-HhcCCCCCcceEeeecCCCCCCCCCCccEEEEc
Q 026036 78 RRRCIELGSGT-G-ALAIFLRKAMNLDITTSDYNDQEIEDNIAYNS-TTNGITPALPHIKHSWGDAFPIPNPDWDLILAS 154 (244)
Q Consensus 78 ~~~VLdlG~G~-G-~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~ 154 (244)
..+|+=+|+|. | .++..+++. +.+|+.+..++. +..+++- ....................+ ....+|+|+..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 35788887762 3 344445443 678888887652 2222221 111010000000000111111 23468988874
Q ss_pred ccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 155 DILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 155 ~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
=-.| ++..+++.+...+++++.++..
T Consensus 80 vK~~------~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 80 LKTT------ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred ecCC------ChHhHHHHHhhhcCCCCEEEEe
Confidence 3321 2235666777778888865555
No 468
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=56.73 E-value=68 Score=26.83 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=43.0
Q ss_pred CeEEEeCCCCc--HHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCCCCCCccEEEEcc
Q 026036 79 RRCIELGSGTG--ALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPIPNPDWDLILASD 155 (244)
Q Consensus 79 ~~VLdlG~G~G--~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~ 155 (244)
.+|.=||+|.- .++..+...+ ..+|++.|.+++.+ +.++. .+.. .... ..........|+|+.+-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~-~~a~~----~g~~---~~~~----~~~~~~~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETR-ARARE----LGLG---DRVT----TSAAEAVKGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHh----CCCC---ceec----CCHHHHhcCCCEEEECC
Confidence 46777877642 2233333332 14799999998754 33321 1210 0000 11111123478887754
Q ss_pred cccCCcChHHHHHHHHHHHHhcCCCCceE
Q 026036 156 ILLYVKQYSNLIKSLSVLLKSYKPKDSQV 184 (244)
Q Consensus 156 ~l~~~~~~~~l~~~l~~~~~~lk~gG~~~ 184 (244)
.. ......++.+...++++..++
T Consensus 75 p~------~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 PV------GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CH------HHHHHHHHHHHhhCCCCCEEE
Confidence 33 122355566666777776443
No 469
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=56.70 E-value=64 Score=23.33 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=46.2
Q ss_pred CCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHHh
Q 026036 146 PDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSCE 225 (244)
Q Consensus 146 ~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (244)
.-.|+|+. |+-..-.+|.+.|-.+.+.|..+|.+.+.++...+ +.+. ......+.+.
T Consensus 44 dvvD~vll----WwR~~DgDL~D~LvDa~~~L~d~G~IWvltPK~gr-----------------~g~V--~~~~I~eaA~ 100 (127)
T PF11253_consen 44 DVVDVVLL----WWRDDDGDLVDALVDARTNLADDGVIWVLTPKAGR-----------------PGHV--EPSDIREAAP 100 (127)
T ss_pred ccccEEEE----EEECCcchHHHHHHHHHhhhcCCCEEEEEccCCCC-----------------CCCC--CHHHHHHHHh
Confidence 45788877 34344568889999999999999998887554422 1121 2467788888
Q ss_pred hcCCeEEEe
Q 026036 226 NAGLEVKHL 234 (244)
Q Consensus 226 ~~Gf~v~~~ 234 (244)
.+|+...+.
T Consensus 101 taGL~~t~~ 109 (127)
T PF11253_consen 101 TAGLVQTKS 109 (127)
T ss_pred hcCCeeeee
Confidence 899976654
No 470
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.57 E-value=72 Score=28.59 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=27.1
Q ss_pred cCCeEEEeCCC-CcHHHHHHHHhCCCeEEEEeCCh
Q 026036 77 ERRRCIELGSG-TGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 77 ~~~~VLdlG~G-~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
.+++|+=+|-| +|..+..++...+.+|+..|..+
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 57799999999 77666666666689999999764
No 471
>PRK07985 oxidoreductase; Provisional
Probab=56.48 E-value=76 Score=26.23 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=21.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCC
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYN 109 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~ 109 (244)
.+++++|=.|++ |.++..+++.. +.+|+.++.+
T Consensus 47 ~~~k~vlITGas-~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGD-SGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred cCCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEecCC
Confidence 467789988864 44444444433 7788888754
No 472
>PRK07774 short chain dehydrogenase; Provisional
Probab=56.45 E-value=46 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=24.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
++++||=.| |+|.++..+++.. +.+|+.++-++...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~ 43 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGA 43 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 566788777 5566666665543 78899999887544
No 473
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=56.19 E-value=23 Score=24.52 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 86 SGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 86 ~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
||.|.++..+++.. +.+|+.+|.+++.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~ 34 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERV 34 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHH
Confidence 67777887776554 45899999999765
No 474
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=56.13 E-value=30 Score=29.05 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=25.4
Q ss_pred CcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCCh
Q 026036 74 EWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYND 110 (244)
Q Consensus 74 ~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~ 110 (244)
...++.+||=.|+ +.|..++.+|+..+.+++++.-+.
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDR 181 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 3457888888875 455666667777788877766554
No 475
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=56.11 E-value=13 Score=31.25 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHhcCCCCceEeeccc
Q 026036 163 YSNLIKSLSVLLKSYKPKDSQVGHLTK 189 (244)
Q Consensus 163 ~~~l~~~l~~~~~~lk~gG~~~~~~~~ 189 (244)
...|.+.|..+..+|+|||+++++.+.
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 456778999999999999999988433
No 476
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.07 E-value=64 Score=25.74 Aligned_cols=78 Identities=12% Similarity=0.183 Sum_probs=43.4
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------C
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (244)
.++++||=.|+ +|.++..+++.. +.+|++++.+++.+ +.....+...+. ++..+..+..+... .
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKL-AAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHH
Confidence 46778888875 566666655543 77899999987655 333333322211 22334444443211 0
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..+..|+++.+...
T Consensus 84 ~~~~~d~li~~ag~ 97 (255)
T PRK07523 84 EIGPIDILVNNAGM 97 (255)
T ss_pred hcCCCCEEEECCCC
Confidence 12457888887654
No 477
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=56.05 E-value=13 Score=25.22 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCC
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGE 194 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~ 194 (244)
...||+++.. .. ..... ..+..+...++-||.+++..+......
T Consensus 9 G~e~~~~i~d-~~---~g~~p--nal~a~~gtv~gGGllill~p~~~~w~ 52 (92)
T PF08351_consen 9 GQEFDLLIFD-AF---EGFDP--NALAALAGTVRGGGLLILLLPPWESWP 52 (92)
T ss_dssp T--BSSEEEE--S---S---H--HHHHHHHTTB-TT-EEEEEES-GGGTT
T ss_pred CCccCEEEEE-cc---CCCCH--HHHHHHhcceecCeEEEEEcCCHHHhh
Confidence 3468888874 33 22333 788889999999999999877765544
No 478
>PRK05854 short chain dehydrogenase; Provisional
Probab=55.89 E-value=71 Score=26.69 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=42.2
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------C
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (244)
.+++++|=.|++.| +|..+++.. +.+|+.++.+.+...+..+ .+....-...+..+.+|..+... .
T Consensus 12 l~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~-~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 12 LSGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVA-AIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred cCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 35677887776544 454444433 7889999888765423322 22211111123445555544211 1
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..++.|+++.+..+
T Consensus 90 ~~~~iD~li~nAG~ 103 (313)
T PRK05854 90 EGRPIHLLINNAGV 103 (313)
T ss_pred hCCCccEEEECCcc
Confidence 12468988877654
No 479
>PRK09291 short chain dehydrogenase; Provisional
Probab=55.86 E-value=41 Score=26.80 Aligned_cols=74 Identities=14% Similarity=0.143 Sum_probs=40.0
Q ss_pred CeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---CCCCccEEE
Q 026036 79 RRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI---PNPDWDLIL 152 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~fD~I~ 152 (244)
++||=.|+ +|.+|..+++.. +.+|++++.++... ..++......+. .+..+..|+.+.... .....|+|+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQV-TALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 46777776 455555554433 78899998876543 233222222221 234555666543211 123689888
Q ss_pred Eccc
Q 026036 153 ASDI 156 (244)
Q Consensus 153 ~~~~ 156 (244)
.+..
T Consensus 79 ~~ag 82 (257)
T PRK09291 79 NNAG 82 (257)
T ss_pred ECCC
Confidence 8654
No 480
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=55.77 E-value=37 Score=29.06 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=53.7
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEee--ecCCCC-CCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKH--SWGDAF-PIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 147 (244)
....++.+||=+|+| .|..+..+++..+. +|+++|.+++.+ +.++. .+....+..... ++.+.. ....+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~-~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKF-ELAKK----FGATDCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHH----cCCCEEEcccccchHHHHHHHHHhCCC
Confidence 345678899999864 44455556666677 799999998765 44432 122100000000 000000 011235
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
+|+|+- +. . .. ..+....+.++++ |++++.
T Consensus 257 ~d~vid--~~---g-~~---~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 257 VDYTFE--CI---G-NV---KVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CcEEEE--CC---C-Ch---HHHHHHHHhhccCCCeEEEE
Confidence 888875 22 1 12 4556677888886 888765
No 481
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=55.61 E-value=55 Score=25.61 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHh---CCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC--CCCCCccEEEEcccccCC
Q 026036 86 SGTGALAIFLRKA---MNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP--IPNPDWDLILASDILLYV 160 (244)
Q Consensus 86 ~G~G~~~~~~a~~---~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fD~I~~~~~l~~~ 160 (244)
|-+|..+..+++. .+.+|+++=-++..+ ... .++ ..++.|..+... .....||+|+++.-.+..
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~------~~~----~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~ 75 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKL-AAR------QGV----TILQKDIFDLTSLASDLAGHDAVISAFGAGAS 75 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhc-ccc------ccc----eeecccccChhhhHhhhcCCceEEEeccCCCC
Confidence 3467666555433 388899998887644 111 111 122333334332 223469999998777544
Q ss_pred cChHHHHHHHHHHHHhcCC
Q 026036 161 KQYSNLIKSLSVLLKSYKP 179 (244)
Q Consensus 161 ~~~~~l~~~l~~~~~~lk~ 179 (244)
...+...+.++.+...|+.
T Consensus 76 ~~~~~~~k~~~~li~~l~~ 94 (211)
T COG2910 76 DNDELHSKSIEALIEALKG 94 (211)
T ss_pred ChhHHHHHHHHHHHHHHhh
Confidence 4444445667777777776
No 482
>PRK06914 short chain dehydrogenase; Provisional
Probab=55.59 E-value=72 Score=25.87 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=39.6
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--------CCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------PNP 146 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 146 (244)
++++|=.|+ +|.++..+++.. +.+|++++-+++.+ +.........+...++..+..|..+.... ..+
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQ-ENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHH-HHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 456777775 444454544332 77899998877654 23322222222222334445555443211 113
Q ss_pred CccEEEEcccc
Q 026036 147 DWDLILASDIL 157 (244)
Q Consensus 147 ~fD~I~~~~~l 157 (244)
+.|.|+.+...
T Consensus 81 ~id~vv~~ag~ 91 (280)
T PRK06914 81 RIDLLVNNAGY 91 (280)
T ss_pred CeeEEEECCcc
Confidence 57888776543
No 483
>PRK09072 short chain dehydrogenase; Provisional
Probab=55.39 E-value=1.1e+02 Score=24.57 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=39.9
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC--------CC
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------PN 145 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 145 (244)
++++||=.|++.| +|..+++.. +.+|++++.+++.+ +....... ...++..+..|..+.... ..
T Consensus 4 ~~~~vlItG~s~~-iG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGG-IGQALAEALAAAGARLLLVGRNAEKL-EALAARLP---YPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 4567777776544 444433332 77899999987655 33322221 112333444444432110 02
Q ss_pred CCccEEEEcccc
Q 026036 146 PDWDLILASDIL 157 (244)
Q Consensus 146 ~~fD~I~~~~~l 157 (244)
+..|.++.+...
T Consensus 79 ~~id~lv~~ag~ 90 (263)
T PRK09072 79 GGINVLINNAGV 90 (263)
T ss_pred CCCCEEEECCCC
Confidence 457888886544
No 484
>PRK08251 short chain dehydrogenase; Provisional
Probab=55.24 E-value=70 Score=25.30 Aligned_cols=77 Identities=8% Similarity=0.044 Sum_probs=40.9
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------CCC
Q 026036 78 RRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------IPN 145 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 145 (244)
++++|=.| |+|.++..+++.. +.+|+.++.+++.+ +.............++..+..|..+... ...
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRL-EELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 35677666 4666666665544 67899999887655 3332222221111123344455544311 112
Q ss_pred CCccEEEEccc
Q 026036 146 PDWDLILASDI 156 (244)
Q Consensus 146 ~~fD~I~~~~~ 156 (244)
+..|+|+.+..
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 45788887654
No 485
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.89 E-value=1.2e+02 Score=24.85 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=26.8
Q ss_pred cccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCC
Q 026036 75 WIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYN 109 (244)
Q Consensus 75 ~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~ 109 (244)
..++.+|+-.|+ +.|.....+++..+.+|++++.+
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~ 177 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST 177 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH
Confidence 557889999997 35666677777778899998854
No 486
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=54.83 E-value=37 Score=31.34 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=27.0
Q ss_pred cCcccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 73 REWIERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
.....|++||=.|+ +|.+|..+++.. +.+|++++.+.+.+
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 34456777777765 566676655443 77899999887654
No 487
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=54.83 E-value=69 Score=26.52 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=53.9
Q ss_pred cCcccCCeEEEeCC--CCcHHHHHHHHhCCCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCC-CCCC-CCCc
Q 026036 73 REWIERRRCIELGS--GTGALAIFLRKAMNLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDA-FPIP-NPDW 148 (244)
Q Consensus 73 ~~~~~~~~VLdlG~--G~G~~~~~~a~~~~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~f 148 (244)
.+..+|..||--.+ |.|.+..-+++..+.+++++-.+.+.. +.+++|-....+ ....-|..+. ..+. ....
T Consensus 142 y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~-~~akenG~~h~I----~y~~eD~v~~V~kiTngKGV 216 (336)
T KOG1197|consen 142 YNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKH-EIAKENGAEHPI----DYSTEDYVDEVKKITNGKGV 216 (336)
T ss_pred cCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHH-HHHHhcCCccee----eccchhHHHHHHhccCCCCc
Confidence 46678988887654 666666666666688888888776543 555444322211 1111111010 0111 2246
Q ss_pred cEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 149 DLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 149 D~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
|+++ |.+ -. +++..-...||++|.++-.
T Consensus 217 d~vy--Dsv-----G~---dt~~~sl~~Lk~~G~mVSf 244 (336)
T KOG1197|consen 217 DAVY--DSV-----GK---DTFAKSLAALKPMGKMVSF 244 (336)
T ss_pred eeee--ccc-----cc---hhhHHHHHHhccCceEEEe
Confidence 6554 222 11 5566667889999975543
No 488
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=54.72 E-value=20 Score=26.81 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=46.2
Q ss_pred EEEeCCCCcHHHHHHH-HhCCCeEEEEeCChHHHHHHHHHhHHh-cCCCCC-cc-eEeeecCCCCCCCCCCccEEEEccc
Q 026036 81 CIELGSGTGALAIFLR-KAMNLDITTSDYNDQEIEDNIAYNSTT-NGITPA-LP-HIKHSWGDAFPIPNPDWDLILASDI 156 (244)
Q Consensus 81 VLdlG~G~G~~~~~~a-~~~~~~v~~~D~~~~~l~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~fD~I~~~~~ 156 (244)
|.=+|+|.+..+++.. ...+.+|+.-..+++.+ +.++.+-.. ...+.. .. .+.. .+.+.......|+|+..=+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~-~~i~~~~~n~~~~~~~~l~~~i~~--t~dl~~a~~~ad~IiiavP 78 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQI-EEINETRQNPKYLPGIKLPENIKA--TTDLEEALEDADIIIIAVP 78 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHH-HHHHHHTSETTTSTTSBEETTEEE--ESSHHHHHTT-SEEEE-S-
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHH-HHHHHhCCCCCCCCCcccCccccc--ccCHHHHhCcccEEEeccc
Confidence 4557777665554332 22367899999998765 444432211 111110 00 0111 1111111234688877433
Q ss_pred ccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 157 LLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 157 l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
- ..+...++++...++++-.+++.
T Consensus 79 s------~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 79 S------QAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp G------GGHHHHHHHHTTTSHTT-EEEET
T ss_pred H------HHHHHHHHHHhhccCCCCEEEEe
Confidence 3 22337778888888666544443
No 489
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=54.66 E-value=38 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=30.1
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHH
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNI 117 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~ 117 (244)
....+|.+||=.|+| .|..+..+|+..+. +|+++|.+++.. +.+
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~-~~~ 228 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKF-EQA 228 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH-HHH
Confidence 345678899998864 34444556666676 799999988754 444
No 490
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=54.43 E-value=78 Score=25.21 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=42.9
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.++++||=.|++ |.++..+++.. +.+|+.++.+++.+ +.........+ .++..+..|..+....
T Consensus 9 ~~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATL-EAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 367788888864 44455544433 78999999987655 33333332222 1233445555442110
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..++.|.++.+...
T Consensus 85 ~~~~id~vi~~ag~ 98 (256)
T PRK06124 85 EHGRLDILVNNVGA 98 (256)
T ss_pred hcCCCCEEEECCCC
Confidence 12467888876554
No 491
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=54.33 E-value=13 Score=31.09 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCCccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEeecccccCCCCCCCCCCCeEEEeeeeccCccchhhHHHHH
Q 026036 145 NPDWDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGHLTKNEQGEGTEGLPWPAFLMSWRRRIGKEDETIFFTSC 224 (244)
Q Consensus 145 ~~~fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 224 (244)
.+.||+|+.+....+. -.+ ++.++++|+|.+++-+. .+++..++.....-.....+++
T Consensus 220 ~~~Fd~ifvs~s~vh~-L~p-------~l~~~~a~~A~LvvEta--------------KfmvdLrKEq~~~F~~kv~eLA 277 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHF-LKP-------ELFQALAPDAVLVVETA--------------KFMVDLRKEQLQEFVKKVKELA 277 (289)
T ss_pred cCCCCEEEEhhhhHhh-cch-------HHHHHhCCCCEEEEEcc--------------hhheeCCHHHHHHHHHHHHHHH
Confidence 3579999886664222 222 26778899998777521 1233333222111124556789
Q ss_pred hhcCCeEEE
Q 026036 225 ENAGLEVKH 233 (244)
Q Consensus 225 ~~~Gf~v~~ 233 (244)
+++||+...
T Consensus 278 ~~aG~~p~~ 286 (289)
T PF14740_consen 278 KAAGFKPVT 286 (289)
T ss_pred HHCCCcccc
Confidence 999997643
No 492
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=54.18 E-value=47 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=21.9
Q ss_pred CeEEEeCCCCcHHHHHHHHhC--CCeEEEEeCChHHH
Q 026036 79 RRCIELGSGTGALAIFLRKAM--NLDITTSDYNDQEI 113 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~~~a~~~--~~~v~~~D~~~~~l 113 (244)
.+|-=+ |.|.+|+.+|... +.+|+++|++++.+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~v 41 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRI 41 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHH
Confidence 355444 5566665554443 57899999999866
No 493
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.01 E-value=1.4e+02 Score=25.43 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=51.1
Q ss_pred CeEEEeCCCCcHHHH--HHHHhCCCeEEEEeCChHHHHHHHHHhHH-------hcCCCCC--cceEeeecCCCCCCCCCC
Q 026036 79 RRCIELGSGTGALAI--FLRKAMNLDITTSDYNDQEIEDNIAYNST-------TNGITPA--LPHIKHSWGDAFPIPNPD 147 (244)
Q Consensus 79 ~~VLdlG~G~G~~~~--~~a~~~~~~v~~~D~~~~~l~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~ 147 (244)
++|-=||+|+=..++ .++. .+.+|+..|.+++.+ +.++..+. ..++... ...+. ....+...-..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~--~~~~l~~av~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAE-AALRANVANAWPALERQGLAPGASPARLR--FVATIEACVAD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCChhhHHhhce--ecCCHHHHhcC
Confidence 467777887433332 2332 388999999998765 33222111 1111100 00011 11111111235
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCCCceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~gG~~~~~ 186 (244)
.|+|+-+ +. +..+.-...++++.+.++|+..+...
T Consensus 84 aDlViEa-vp---E~l~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 84 ADFIQES-AP---EREALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CCEEEEC-Cc---CCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 7888874 22 33444447778899999888744443
No 494
>PRK07326 short chain dehydrogenase; Provisional
Probab=53.50 E-value=66 Score=25.20 Aligned_cols=36 Identities=8% Similarity=0.308 Sum_probs=25.1
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
.+.+||=.|+ +|.+|..+++.. +.+|++++.++...
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~ 43 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKEL 43 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHH
Confidence 4568888885 666666655433 67899999887654
No 495
>PRK07677 short chain dehydrogenase; Provisional
Probab=52.58 E-value=48 Score=26.43 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHH
Q 026036 78 RRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEI 113 (244)
Q Consensus 78 ~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l 113 (244)
++++|=.|++.| ++..+++.. +.+|++++.++..+
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~ 38 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKL 38 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 356777776544 444443332 67899999887654
No 496
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=52.54 E-value=82 Score=25.15 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=43.5
Q ss_pred ccCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC---------
Q 026036 76 IERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI--------- 143 (244)
Q Consensus 76 ~~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 143 (244)
.++++||=.| |+|.++..+++.. +.+|+.++.+.+.+ +.........+ .++..+..+..+....
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~-~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEEL-EEAAAHLEALG--IDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3677888888 4666666665544 77899999887654 33333322221 1223344444432111
Q ss_pred CCCCccEEEEcccc
Q 026036 144 PNPDWDLILASDIL 157 (244)
Q Consensus 144 ~~~~fD~I~~~~~l 157 (244)
..++.|.|+.+...
T Consensus 86 ~~~~id~vi~~ag~ 99 (259)
T PRK08213 86 RFGHVDILVNNAGA 99 (259)
T ss_pred HhCCCCEEEECCCC
Confidence 12467988876543
No 497
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=52.42 E-value=45 Score=28.51 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=53.0
Q ss_pred cCcccCCeEEEeCCC-CcHHHHHHHHhCCC-eEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeee--cCCCC-CCCCCC
Q 026036 73 REWIERRRCIELGSG-TGALAIFLRKAMNL-DITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHS--WGDAF-PIPNPD 147 (244)
Q Consensus 73 ~~~~~~~~VLdlG~G-~G~~~~~~a~~~~~-~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~ 147 (244)
....+|.+||=.|+| .|..+..+|+..+. +|+++|.+++.. +.++.. +....+.....+ +.+.. ......
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~-~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKF-EKAKEF----GATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHHHc----CCCcEeccccccchHHHHHHHHhCCC
Confidence 345678899988864 34444556666676 799999987654 444321 111000000000 00000 011135
Q ss_pred ccEEEEcccccCCcChHHHHHHHHHHHHhcCCC-CceEee
Q 026036 148 WDLILASDILLYVKQYSNLIKSLSVLLKSYKPK-DSQVGH 186 (244)
Q Consensus 148 fD~I~~~~~l~~~~~~~~l~~~l~~~~~~lk~g-G~~~~~ 186 (244)
+|+|+- +. . .. ..+....+.++++ |++++.
T Consensus 255 ~d~vid--~~---g-~~---~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFE--CT---G-NA---DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEE--CC---C-Ch---HHHHHHHHhcccCCCEEEEE
Confidence 888874 22 1 12 4556677788875 988765
No 498
>PRK06125 short chain dehydrogenase; Provisional
Probab=52.25 E-value=77 Score=25.35 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=40.7
Q ss_pred cCCeEEEeCCCCcHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCCC-----CCCCc
Q 026036 77 ERRRCIELGSGTGALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFPI-----PNPDW 148 (244)
Q Consensus 77 ~~~~VLdlG~G~G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f 148 (244)
++++||=.|++.| ++..+++.. +.+|++++.+++.+ +.....+.... ..++..+..|..+.... ..++.
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADAL-EALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 5678888886544 454443332 67999999887654 33322222111 11223344444432110 12468
Q ss_pred cEEEEcccc
Q 026036 149 DLILASDIL 157 (244)
Q Consensus 149 D~I~~~~~l 157 (244)
|.++.+...
T Consensus 83 d~lv~~ag~ 91 (259)
T PRK06125 83 DILVNNAGA 91 (259)
T ss_pred CEEEECCCC
Confidence 888876544
No 499
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=52.22 E-value=1.3e+02 Score=24.58 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=54.4
Q ss_pred cCCeEEEeCCCC-cHHHHHHHHhC---CCeEEEEeCChHHHHHHHHHhHHhcCCCCCcceEeeecCCCCC---------C
Q 026036 77 ERRRCIELGSGT-GALAIFLRKAM---NLDITTSDYNDQEIEDNIAYNSTTNGITPALPHIKHSWGDAFP---------I 143 (244)
Q Consensus 77 ~~~~VLdlG~G~-G~~~~~~a~~~---~~~v~~~D~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 143 (244)
.++.+|=.|+++ +.++..+++.+ +.+|+.++.+... .+.++......+. . ..+..|..+... .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~ 79 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-KKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKK 79 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-HHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHH
Confidence 567888888762 34555554433 7789999887531 1222221111111 1 234455544211 1
Q ss_pred CCCCccEEEEcccccCC---------cChHHH-----------HHHHHHHHHhcCCCCceEee
Q 026036 144 PNPDWDLILASDILLYV---------KQYSNL-----------IKSLSVLLKSYKPKDSQVGH 186 (244)
Q Consensus 144 ~~~~fD~I~~~~~l~~~---------~~~~~l-----------~~~l~~~~~~lk~gG~~~~~ 186 (244)
..++.|+++.+..+... ...+.+ ....+.+.+.++.+|+++.+
T Consensus 80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~i 142 (274)
T PRK08415 80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTL 142 (274)
T ss_pred HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEE
Confidence 12578988887654211 111222 23345666777777876655
No 500
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=52.04 E-value=15 Score=28.02 Aligned_cols=58 Identities=17% Similarity=0.362 Sum_probs=39.6
Q ss_pred HHHHHhhccCcccCCeEEEeCCCCcHHHHHHHHhC-CCeEEEEeCChHHHHHHHHHhHHhcC
Q 026036 65 FAEWLMHHREWIERRRCIELGSGTGALAIFLRKAM-NLDITTSDYNDQEIEDNIAYNSTTNG 125 (244)
Q Consensus 65 l~~~~~~~~~~~~~~~VLdlG~G~G~~~~~~a~~~-~~~v~~~D~~~~~l~~~~~~~~~~~~ 125 (244)
+..|+..+.. .+.+-+|+|+..|.++-.+|+.. ..++++++.-.+| ....+-|+..|.
T Consensus 69 mrhwivnhck--hdttyidiganvgtfcgiaarhitqgkiiaiepltem-ensirmnvqlnn 127 (286)
T PF05575_consen 69 MRHWIVNHCK--HDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEM-ENSIRMNVQLNN 127 (286)
T ss_pred hhHhhhhhcc--CCceEEEeccccccchhhhhhhcccCceEEEechhhh-hhheeeeeeeCC
Confidence 3445544432 45689999999998876565554 6789999987776 355666666654
Done!