BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026037
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 330 bits (846), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 157/223 (70%), Positives = 184/223 (82%), Gaps = 1/223 (0%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRD 81
A ITFTNNC NT+WPG LT D QLS GFELASKA +++D PSPW GRFW RT+CS D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 82 SSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAP 141
++GKFTC TADCGSGQV CNG GA PPA+LVE TIAA+ GQD++D+SLVDGFNLP+SVAP
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 142 QGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPET 201
QGG+G C SSC ANVN VCP+ L VK +DG+VI+CKSAC AF + +YCCT N PET
Sbjct: 121 QGGTGE-CKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPET 179
Query: 202 CPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
CPPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct: 180 CPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 318 bits (816), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/223 (69%), Positives = 172/223 (77%), Gaps = 1/223 (0%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRD 81
ATI+F NNC +WPG LT+D QLS GFELAS+A LD P PW GRFWART CS D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 82 SSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAP 141
+SGKF CATADC SGQV CNGNGA PPA+L EF I A GQDF+D+SLVDGFNLP+SV P
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 142 QGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPET 201
QGG+G C T+SC ANVNAVCPSEL KGSDG+V+AC SAC F PQYCCT N PET
Sbjct: 121 QGGTG-DCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 202 CPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
CPPT YS+IF + CP AYSYAYDD+ TF+C GGPNY ITFCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 123/224 (54%), Gaps = 19/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSE-NGFELASKAKKTLDVPSPWKGRFWARTQCSR 80
A T N C T+W ++ GG QL+ + + + A T R WART C
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTT-------AARIWARTGCKF 53
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D+SG+ +C T DCG G + C G G AP +L E+ + DFFD+SL+DGFN+P+S
Sbjct: 54 DASGRGSCRTGDCG-GVLQCTGYGRAP-NTLAEYALKQFNNLDFFDISLIDGFNVPMSFL 111
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P GGSG + C +VNA CP+EL G C +AC F + +YCC G+
Sbjct: 112 PDGGSGCS-RGPRCAVDVNARCPAELRQDG------VCNNACPVFKKDEYCCVGS--AAN 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT YS+ FK QCP AYSY DD TSTF+C G NY + FCP
Sbjct: 163 DCHPTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRD 81
ATI NNC T+W + GG +L + + + T R W RT C+ +
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTK------MARVWGRTNCNFN 54
Query: 82 SSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAP 141
++G+ TC T DCG G + C G G PP +L E+ + G DF+D+SLVDGFN+P++ AP
Sbjct: 55 AAGRGTCQTGDCG-GVLQCTGWGK-PPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAP 112
Query: 142 QGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPET 201
SG C C AN+N CP EL V G C + C F QYCCT
Sbjct: 113 TNPSGGKCHAIHCTANINGECPRELRVPG------GCNNPCTTFGGQQYCCTQG-----P 161
Query: 202 CPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGP-NYDITFCP 244
C PT +SK FK +CP AYSY DD TSTF+C GG NY + FCP
Sbjct: 162 CGPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 119/224 (53%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRD 81
ATI NNC T+W + GG +L+ + + + T R W RT C+ +
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTK------MARIWGRTGCNFN 54
Query: 82 SSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAP 141
++G+ TC T DCG G + C G G PP +L E+ + DF+D+SLVDGFN+P++ AP
Sbjct: 55 AAGRGTCQTGDCG-GVLQCTGWGK-PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAP 112
Query: 142 QGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPET 201
SG C C AN+N CP L V G C + C F QYCCT
Sbjct: 113 TKPSGGKCHAIHCTANINGECPRALKVPG------GCNNPCTTFGGQQYCCTQG-----P 161
Query: 202 CPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGP-NYDITFCP 244
C PT+ SK FK +CP AYSY DD TSTF+C GG NY + FCP
Sbjct: 162 CGPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSE-NGFELASKAKKTLDVPSPWKGRFWARTQCSR 80
AT N C T+W A+ GG QL++ + + A T GR W RT CS
Sbjct: 1 ATFEIVNRCSYTVWAAAVPG-GGRQLNQGQSWTINVNAGTT-------GGRIWGRTGCSF 52
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG+ C T DCG G ++C G PP +L EF + DFFD+SLVDGFN+P+ +
Sbjct: 53 DGSGRGRCQTGDCG-GVLSCTAYGN-PPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFS 110
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P G C C A++N CP L G C + C F QYCC
Sbjct: 111 PTSGG---CRGIRCAADINGQCPGALKAPG------GCNNPCTVFKTDQYCCNSG----- 156
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT YS+ FK CP AYSY DD+T+TF+C GG NY + FCP
Sbjct: 157 ACSPTDYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 117/224 (52%), Gaps = 27/224 (12%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + GG G L S T+ V P R W RT C+
Sbjct: 1 ATFDILNKCTYTVW--AAASPGG------GRRLDSGQSWTITVNPGTTNARIWGRTSCTF 52
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D++G+ C T DC +G + C G G+ PP +L EF + D+ D+SLVDGFN+P+ +
Sbjct: 53 DANGRGKCETGDC-NGLLECQGYGS-PPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFS 110
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
C C ++N CPSEL G C + C F +YCCT + P
Sbjct: 111 -------GCRGIQCSVDINGQCPSELKAPG------GCNNPCTVFKTNEYCCT---DGPG 154
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
+C PT YSK FKD+CP AYSY DD+TS F+C G NY +TFCP
Sbjct: 155 SCGPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 109/218 (50%), Gaps = 20/218 (9%)
Query: 28 NNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRDSSGKFT 87
NNC T+W A GG +L E G A + R W RT C+ D +G+
Sbjct: 8 NNCPYTVWAAATPVGGGRRL-ERGQSWWFWAPPGTKM-----ARIWGRTNCNFDGAGRGW 61
Query: 88 CATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGA 147
C T DCG G + C G G PP +L E+ + DF+D+S++DGFN+P+S P
Sbjct: 62 CQTGDCG-GVLECKGWGK-PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPG 119
Query: 148 TCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKY 207
C C AN+N CP L V G C + C F QYCCT C PT+
Sbjct: 120 KCHGIQCTANINGECPGSLRVPG------GCNNPCTTFGGQQYCCTQG-----PCGPTEL 168
Query: 208 SKIFKDQCPQAYSYAYDDRTSTFSCTGG-PNYDITFCP 244
S+ FK +CP AYSY DD TSTF+CT +Y + FCP
Sbjct: 169 SRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG+ C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P+ +
Sbjct: 59 DDSGRGICRTGDCG-GLLQCKRFG-RPPTTLAEFSL-NQYGKDYIDISNIKGFNVPMDFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+YS+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 134 bits (336), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P+ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQYGKDYIDISNIKGFNVPMDFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+YS+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P++ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQYGKDYIDISNIKGFNVPMNFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+YS+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 133 bits (335), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 115/224 (51%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P++ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQYGKDYIDISNIKGFNVPMNFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+YS+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 133 bits (335), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P+ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQYGKDYIDISNIKGFNVPMDFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+YS+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEYSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 131 bits (329), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D+ D+S + GFN+P++ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQXGKDYIDISNIKGFNVPMNFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+ S+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEXSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 130 bits (326), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDV-PSPWKGRFWARTQCSR 80
AT N C T+W A + G A L G +L S T++V P G+ WART C
Sbjct: 1 ATFEIVNRCSXTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 81 DSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVA 140
D SG C T DCG G + C G PP +L EF++ G+D D+S + GFN+P++ +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSL-NQXGKDXIDISNIKGFNVPMNFS 115
Query: 141 PQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPE 200
P + C C A++ CP++L G C AC F +YCCT
Sbjct: 116 P---TTRGCRGVRCAADIVGQCPAKLKAPGG-----GCNDACTVFQTSEYCCTTG----- 162
Query: 201 TCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244
C PT+ S+ FK CP A+SY D+ +T +C G NY +TFCP
Sbjct: 163 KCGPTEXSRFFKRLCPDAFSYVL-DKPTTVTCPGSSNYRVTFCP 205
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 22 ATITFTNNCQNTIWPGA--LTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCS 79
A +T TN C T+WP + A GG G EL A +LD P W RT CS
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGG-----GTELHPGASWSLDTPVIGSQYIWGRTGCS 55
Query: 80 RDSSGKFTCATADCGSGQVTCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSV 139
D +GK C T DCG +TC GN A P ++ E ++ + S + GFN+P+++
Sbjct: 56 FDRAGKGRCQTGDCGGSSLTCGGNPAV-PTTMAEVSVLQGN-YTYGVTSTLKGFNVPMNL 113
Query: 140 APQGGSGATCTTSSC 154
G C + C
Sbjct: 114 KCSSGDALPCRKAGC 128
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 144 GSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQY---CCTGAFNKPE 200
G T +VN P EL VK DG V A +E Y C T + P
Sbjct: 1 GGSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPP 60
Query: 201 TCPPTKYS 208
PT+ S
Sbjct: 61 GVDPTQVS 68
>pdb|3I9S|A Chain A, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|B Chain B, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|C Chain C, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
pdb|3I9S|D Chain D, Structure From The Mobile Metagenome Of V.Cholerae.
Integron Cassette Protein Vch_cass6
Length = 183
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 20 HLATITFTNNCQNTIW 35
HLATI T+NCQ W
Sbjct: 127 HLATIAITHNCQRLDW 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,781,092
Number of Sequences: 62578
Number of extensions: 327998
Number of successful extensions: 766
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 23
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)