Query 026037
Match_columns 244
No_of_seqs 143 out of 712
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 02:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 1.9E-86 4.1E-91 580.7 18.8 219 23-243 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 7.9E-84 1.7E-88 564.2 17.7 217 24-244 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.1E-82 2.3E-87 558.9 17.1 214 24-244 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 5E-80 1.1E-84 539.7 9.4 213 28-244 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 3.9E-60 8.5E-65 396.1 14.1 156 24-243 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 9.9E-53 2.1E-57 349.9 13.5 150 24-244 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 2.9E-51 6.4E-56 341.6 13.6 153 24-242 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.2 3.1E-05 6.7E-10 65.0 12.5 45 107-154 72-119 (155)
9 cd09216 GH64-LPHase-like glyco 95.4 0.08 1.7E-06 50.1 8.6 111 23-143 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 91.8 0.28 6E-06 46.8 5.1 80 56-143 62-146 (369)
11 cd05468 pVHL von Hippel-Landau 71.7 7.1 0.00015 32.1 4.5 50 21-76 8-57 (141)
12 cd09214 GH64-like glycosyl hyd 71.4 3.6 7.9E-05 38.5 3.0 32 110-143 124-155 (319)
13 cd09214 GH64-like glycosyl hyd 66.1 3.6 7.9E-05 38.5 1.8 37 205-241 276-317 (319)
14 PF01847 VHL: von Hippel-Linda 63.7 7.2 0.00016 33.0 3.0 49 20-74 13-61 (156)
15 PF06282 DUF1036: Protein of u 59.9 16 0.00035 29.0 4.3 42 21-62 3-44 (115)
16 cd09216 GH64-LPHase-like glyco 57.2 9.9 0.00022 36.2 3.0 22 205-226 310-333 (353)
17 cd09220 GH64-GluB-like glycosi 56.8 11 0.00023 36.2 3.2 22 205-226 321-344 (369)
18 PHA03094 dUTPase; Provisional 43.4 27 0.00059 28.7 3.3 29 50-78 34-68 (144)
19 PF01356 A_amylase_inhib: Alph 33.1 59 0.0013 23.8 3.1 38 23-63 16-53 (68)
20 PF11142 DUF2917: Protein of u 28.0 66 0.0014 22.8 2.7 23 52-74 2-29 (63)
21 PF05991 NYN_YacP: YacP-like N 26.9 21 0.00045 30.0 -0.1 10 129-138 2-11 (166)
22 PF07172 GRP: Glycine rich pro 25.9 50 0.0011 25.5 1.9 24 1-24 1-28 (95)
23 TIGR00192 urease_beta urease, 25.7 1.3E+02 0.0029 23.7 4.2 58 17-74 17-92 (101)
24 PF07610 DUF1573: Protein of u 24.9 1.6E+02 0.0035 19.1 4.1 42 23-64 1-43 (45)
25 cd00407 Urease_beta Urease bet 24.8 1.4E+02 0.003 23.6 4.2 58 17-74 17-92 (101)
26 PF00947 Pico_P2A: Picornaviru 24.2 42 0.00092 27.5 1.3 17 84-101 83-99 (127)
27 PF14874 PapD-like: Flagellar- 23.4 1.8E+02 0.0038 21.5 4.6 47 18-64 20-69 (102)
28 PF05726 Pirin_C: Pirin C-term 23.3 88 0.0019 23.9 2.9 25 52-76 4-28 (104)
29 cd07557 trimeric_dUTPase Trime 23.1 1E+02 0.0023 22.5 3.2 27 51-77 13-45 (92)
30 smart00783 A_amylase_inhib Alp 22.2 1.3E+02 0.0029 22.0 3.4 39 22-63 16-54 (69)
31 PF13978 DUF4223: Protein of u 21.9 1.1E+02 0.0024 21.4 2.7 27 12-38 13-41 (56)
32 PLN02547 dUTP pyrophosphatase 21.7 1.2E+02 0.0025 25.5 3.5 28 50-77 45-78 (157)
33 PF14625 Lustrin_cystein: Lust 21.5 1.1E+02 0.0023 19.7 2.6 18 161-178 2-19 (45)
34 KOG4710 E3 ubiquitin ligase, V 21.4 1.4E+02 0.0031 25.3 3.9 39 22-63 26-64 (170)
35 PF10633 NPCBM_assoc: NPCBM-as 20.9 1.4E+02 0.0031 21.3 3.4 17 19-35 6-22 (78)
36 PHA02703 ORF007 dUTPase; Provi 20.7 1.3E+02 0.0027 25.5 3.5 29 50-78 42-76 (165)
37 PRK13203 ureB urease subunit b 20.4 2E+02 0.0043 22.7 4.3 58 17-74 17-92 (102)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=1.9e-86 Score=580.72 Aligned_cols=219 Identities=63% Similarity=1.210 Sum_probs=210.8
Q ss_pred EEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeeeeecccCCCCCCccccccccCCCccccCC
Q 026037 23 TITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNG 102 (244)
Q Consensus 23 t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g 102 (244)
+|||+|||+||||||+++++|++.+..+||+|+||++++|++|++|+|||||||+|++|+.|+++|+||||+ |+|+|+|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-CeeecCC
Confidence 599999999999999999999999988999999999999999999999999999999999999999999999 9999998
Q ss_pred CCCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchh
Q 026037 103 NGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSAC 182 (244)
Q Consensus 103 ~g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C 182 (244)
.+++||+|||||+|++.+++|||||||||||||||+|+|+++... |+.++|.+|||..||+||||++.+|+||||||||
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~-C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGG-CRTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCC-CCCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 887899999999999877889999999999999999999865444 9999999999999999999998779999999999
Q ss_pred hhcCCCcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEcc
Q 026037 183 AAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFC 243 (244)
Q Consensus 183 ~~~~~~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtFC 243 (244)
.+|++|||||+|+|++|++|+|+.|+++||++||+||+|||||++++|+|+++++|+|+||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999998899999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=7.9e-84 Score=564.17 Aligned_cols=217 Identities=59% Similarity=1.159 Sum_probs=207.7
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCc-eeeeeeecccCCCCCCccccccccCCCccccCC
Q 026037 24 ITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRDSSGKFTCATADCGSGQVTCNG 102 (244)
Q Consensus 24 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~Ws-GriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g 102 (244)
|||+|||+||||||++++ |++.+..+||+|++|+++++.+|++|. |||||||+|++|++|+++|+||||+ |+|+|.+
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecCC
Confidence 799999999999999998 899998899999999999999999997 9999999999999999999999999 9999998
Q ss_pred CCCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchh
Q 026037 103 NGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSAC 182 (244)
Q Consensus 103 ~g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C 182 (244)
.+++||+|||||+|++.+++|||||||||||||||+|+|+++... |+.++|.+||+..||+|||+++ +|+||||+|+|
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~-C~~~~C~~d~~~~CP~~L~v~~-~g~vv~C~SaC 156 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGD-CKGAGCTADLNAQCPAELQVPG-GGSVVACNSAC 156 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCC-cCCCcCCCcccccCCHHHcccc-CCcccccccHh
Confidence 887899999999999877899999999999999999999865444 9999999999999999999984 48999999999
Q ss_pred hhcCCCcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEccC
Q 026037 183 AAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244 (244)
Q Consensus 183 ~~~~~~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtFCP 244 (244)
.+|++|||||+|+|++|++|+|+.|+++||++||+||+||+||++++|+|+++++|+|+|||
T Consensus 157 ~~f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 157 TVFGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred hccCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.1e-82 Score=558.91 Aligned_cols=214 Identities=41% Similarity=0.908 Sum_probs=200.0
Q ss_pred EEEEeCCCCcccceeecCCCCc---cccCCceEecCCCeEEEecCCCCc-eeeeeeecccCC-CCCCccccccccCCCcc
Q 026037 24 ITFTNNCQNTIWPGALTADGGA---QLSENGFELASKAKKTLDVPSPWK-GRFWARTQCSRD-SSGKFTCATADCGSGQV 98 (244)
Q Consensus 24 ~ti~N~C~~tVw~~~~~~~g~~---~~~~~g~~L~~G~s~s~~vp~~Ws-GriwaRtgC~~~-~~g~~~C~TGdCgsg~l 98 (244)
|||+|||+||||||+++++|++ .+..+||+|+||++++|.+|++|+ |||||||+|++| ..|+++|+||||+ |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999999999887 667799999999999999999997 999999999999 5699999999999 999
Q ss_pred ccCCCCCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCcccccc-CCCCcEec
Q 026037 99 TCNGNGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVK-GSDGNVIA 177 (244)
Q Consensus 99 ~C~g~g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~-~~~g~~vg 177 (244)
+|.+. +.||+|||||+|++. ++|||||||||||||||+|.|.. . |+.++|.+|||..||+||||+ +.+|++||
T Consensus 80 ~C~~~-g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~---~-C~~~~C~~dln~~CP~~L~v~~~~~g~~va 153 (229)
T cd09219 80 TCENS-DQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI---T-CPQPQCQVDLNVLCPALLRGPLDQKGVNLG 153 (229)
T ss_pred ecCCC-CCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC---C-CCCCcccCCCcccCCHHHccccCCCCccce
Confidence 99954 459999999999976 78999999999999999999932 4 999999999999999999997 45689999
Q ss_pred ccchhhh-cCC--CcccccCCCCCCCCCCC--chhhHHHHhhCCCcccccCCCCC--cceecCC--CCceEEEccC
Q 026037 178 CKSACAA-FNE--PQYCCTGAFNKPETCPP--TKYSKIFKDQCPQAYSYAYDDRT--STFSCTG--GPNYDITFCP 244 (244)
Q Consensus 178 C~S~C~~-~~~--~~~CC~g~~~~~~~C~p--t~ys~~fK~~CP~AYsya~Dd~t--s~~tC~~--~~~y~VtFCP 244 (244)
|||+|.+ |+. |||||+|+|++|++|+| +.|+++||++||+||||||||++ |+|+|++ +++|+|+|||
T Consensus 154 C~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 154 CISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred ecCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999999 655 99999999999999999 88999999999999999999999 6799997 7999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=5e-80 Score=539.74 Aligned_cols=213 Identities=58% Similarity=1.203 Sum_probs=178.3
Q ss_pred eCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeeeeecccCCCCCCccccccccCCCccccCCCCCCC
Q 026037 28 NNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGAAP 107 (244)
Q Consensus 28 N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g~g~~~ 107 (244)
|||+|||||++++++|++.+..+|++|++|+++++.+|++|+|||||||+|++++.|+++|+||||+ |+++|++.++++
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccCcc
Confidence 9999999999999999888888999999999999999999999999999999999999999999999 999999877779
Q ss_pred CcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchhhhcCC
Q 026037 108 PASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACAAFNE 187 (244)
Q Consensus 108 p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C~~~~~ 187 (244)
|+|||||+|++.+++|||||||||||||||+|+|++ ... |+.++|.+||+..||.|||++..++ +|+|+|+|.++++
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~-C~~~~C~~di~~~CP~~l~v~~~~~-vv~C~SaC~~~~~ 156 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSN-CRSPGCPADINSWCPSELQVKNSDG-VVGCKSACDAFNT 156 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSS-SSSEEE-S-HHHHE-CCCEEETTSS-TTEE--HHHHH-S
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCc-cccccCccccccccchhheeeccCc-eeeecccceeccC
Confidence 999999999877789999999999999999999995 234 9999999999999999999987655 9999999999999
Q ss_pred CcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEccC
Q 026037 188 PQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244 (244)
Q Consensus 188 ~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtFCP 244 (244)
++|||+|+|..+++|+++.|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 157 ~~~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 157 DEYCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred CccccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999999999999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=3.9e-60 Score=396.08 Aligned_cols=156 Identities=53% Similarity=1.102 Sum_probs=143.6
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeeeeecccCCC-CCCccccccccCCCccccCC
Q 026037 24 ITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRDS-SGKFTCATADCGSGQVTCNG 102 (244)
Q Consensus 24 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwaRtgC~~~~-~g~~~C~TGdCgsg~l~C~g 102 (244)
|||+|||+||||||+++++|++ +..+||+|+||+++++.+|++|+|||||||+|++|+ .|+++|+||||+ |+|+|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC
Confidence 7999999999999999999986 778999999999999999999999999999999998 799999999999 9999998
Q ss_pred CCCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchh
Q 026037 103 NGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSAC 182 (244)
Q Consensus 103 ~g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C 182 (244)
.+ .||+|||||+|++.+++|||||||||||||||+|+|+++ . |+.++|.+
T Consensus 79 ~g-~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~--~-C~~~~C~~-------------------------- 128 (157)
T cd09215 79 TG-GPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPG--E-CPTPICAA-------------------------- 128 (157)
T ss_pred CC-CCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCC--C-CCCCcccc--------------------------
Confidence 44 599999999999877889999999999999999999752 3 66555542
Q ss_pred hhcCCCcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEcc
Q 026037 183 AAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFC 243 (244)
Q Consensus 183 ~~~~~~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtFC 243 (244)
||+||+|||||++++|+|+++++|+|+||
T Consensus 129 --------------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 --------------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred --------------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=9.9e-53 Score=349.86 Aligned_cols=150 Identities=51% Similarity=1.073 Sum_probs=134.4
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCC-CceeeeeeecccCCCCCCccccccccCCCccccCC
Q 026037 24 ITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSP-WKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNG 102 (244)
Q Consensus 24 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~-WsGriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g 102 (244)
|+|+|||+||||||+++.. +||+|++|+++++.+|++ |+|||||||+|++|+.|+++|+||||+ |+++|.+
T Consensus 1 ~~~~N~C~~tvWp~~~~~~-------gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~ 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPVG-------GGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG 72 (151)
T ss_pred CEEEeCCCCcccceEecCC-------CCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC
Confidence 7999999999999998742 599999999999999997 999999999999999999999999999 9999995
Q ss_pred CCCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchh
Q 026037 103 NGAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSAC 182 (244)
Q Consensus 103 ~g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C 182 (244)
. +.||+||+||+|+. +++||||||+||||||||.|+|++ .+ |+.++|..
T Consensus 73 ~-g~pp~Tl~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~--~~-C~~~~C~~-------------------------- 121 (151)
T cd09217 73 S-GKPPATLAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTG--GG-CHAIPCAA-------------------------- 121 (151)
T ss_pred C-CCCCceeEEEEecC-CCCccEEEEeecccccceEEecCC--CC-CCCCcCCC--------------------------
Confidence 4 46999999999986 578999999999999999999974 23 66554432
Q ss_pred hhcCCCcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEccC
Q 026037 183 AAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 244 (244)
Q Consensus 183 ~~~~~~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtFCP 244 (244)
+ ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 ------------------------------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ------------------------------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ------------------------------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999884 799999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=2.9e-51 Score=341.58 Aligned_cols=153 Identities=44% Similarity=0.765 Sum_probs=137.3
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeeeeecccCCCCCCccccccccCCCccccCCC
Q 026037 24 ITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNGN 103 (244)
Q Consensus 24 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g~ 103 (244)
|||+|||+|||||++++.++++.+..+|++|+||++++|++|.+|+||||+||+|+++..+++.|+||||+ + +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccCCC
Confidence 79999999999999999888887777899999999999999999999999999999999899999999998 6 678776
Q ss_pred CCCCCcceEEEEeecCCCCcccccccccccCCCceeccCCCCCCCCCCCCccchhhhcCCccccccCCCCcEecccchhh
Q 026037 104 GAAPPASLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQGGSGATCTTSSCKANVNAVCPSELAVKGSDGNVIACKSACA 183 (244)
Q Consensus 104 g~~~p~TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~g~~~~C~~~~C~~dl~~~CP~~l~v~~~~g~~vgC~S~C~ 183 (244)
++.||+|||||+|+..+++||||||+||||||||.|+|..+. + .|+.
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~-g-----------------------------~C~~--- 125 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGD-G-----------------------------TCLS--- 125 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCC-C-----------------------------Cccc---
Confidence 667999999999997667899999999999999999997532 1 1321
Q ss_pred hcCCCcccccCCCCCCCCCCCchhhHHHHhhCCCcccccCCCCCcceecCCCCceEEEc
Q 026037 184 AFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITF 242 (244)
Q Consensus 184 ~~~~~~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~ts~~tC~~~~~y~VtF 242 (244)
.. |||+|||||+.++|+|+++++|.|+|
T Consensus 126 ---------------------~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 126 ---------------------TG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---------------------cc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 11 99999999999999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.22 E-value=3.1e-05 Score=65.05 Aligned_cols=45 Identities=27% Similarity=0.478 Sum_probs=32.7
Q ss_pred CCcceEEEEeecCCCCcccccccccccC---CCceeccCCCCCCCCCCCCc
Q 026037 107 PPASLVEFTIAADKGQDFFDLSLVDGFN---LPLSVAPQGGSGATCTTSSC 154 (244)
Q Consensus 107 ~p~TlaEftl~~~~g~d~YDVSlVdG~N---lP~~i~p~~g~~~~C~~~~C 154 (244)
.|.|..||+|..++.+.|||+|.|.|+- -+|.|.|.+. . |.++.|
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~--~-Cp~I~W 119 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDP--S-CPSIVW 119 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCC--C-CCceEC
Confidence 6899999999876568999999999962 3456666542 2 554444
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.42 E-value=0.08 Score=50.14 Aligned_cols=111 Identities=25% Similarity=0.365 Sum_probs=64.9
Q ss_pred EEEEEeCCCC--cccceeecCC---C---------Ccc---------c--cCCceEe-cCCCeEEEecCCCCceeeeeee
Q 026037 23 TITFTNNCQN--TIWPGALTAD---G---------GAQ---------L--SENGFEL-ASKAKKTLDVPSPWKGRFWART 76 (244)
Q Consensus 23 t~ti~N~C~~--tVw~~~~~~~---g---------~~~---------~--~~~g~~L-~~G~s~s~~vp~~WsGriwaRt 76 (244)
.|+|+||=+. +||..+++.. | +.. . .+-...| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4789999877 8888876421 1 100 0 0012334 367888999998 999999543
Q ss_pred cccCCCCCCccccccccCCCccccCCCCC-CCCc----ceEEEEeecCCCCcccccccccccCCCceeccCC
Q 026037 77 QCSRDSSGKFTCATADCGSGQVTCNGNGA-APPA----SLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQG 143 (244)
Q Consensus 77 gC~~~~~g~~~C~TGdCgsg~l~C~g~g~-~~p~----TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~ 143 (244)
+=. =.|.=. + +.+-.+-+..-. .|-. ..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 81 g~~----L~F~~~-~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSK----LRFKVV-T--NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCe----eEEEec-C--CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEecccceeeeccceEEEEec
Confidence 210 112211 1 112222221111 1111 358999985 34689999999999999998654
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.82 E-value=0.28 Score=46.78 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=49.4
Q ss_pred CCCeEEEecCCCCceeeeeeecccCCCCCCccccccccCCCccccCCCCC-CCCc----ceEEEEeecCCCCcccccccc
Q 026037 56 SKAKKTLDVPSPWKGRFWARTQCSRDSSGKFTCATADCGSGQVTCNGNGA-APPA----SLVEFTIAADKGQDFFDLSLV 130 (244)
Q Consensus 56 ~G~s~s~~vp~~WsGriwaRtgC~~~~~g~~~C~TGdCgsg~l~C~g~g~-~~p~----TlaEftl~~~~g~d~YDVSlV 130 (244)
+|++.++++|.-++||||=-.+=. -.|. ...+ +.+-++-.-.-. .|-. ..+|||++. +.-|=++|.|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~V 133 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISYV 133 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccce
Confidence 588899999998899999543210 1111 1111 222232221111 1111 358999986 4578999999
Q ss_pred cccCCCceeccCC
Q 026037 131 DGFNLPLSVAPQG 143 (244)
Q Consensus 131 dG~NlP~~i~p~~ 143 (244)
|-|.+||.|+-.+
T Consensus 134 D~~~~P~~l~l~~ 146 (369)
T cd09220 134 DFVGLPLGLSLTT 146 (369)
T ss_pred eeeccCeEEEEEc
Confidence 9999999998554
No 11
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=71.74 E-value=7.1 Score=32.14 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=38.8
Q ss_pred ceEEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeeeee
Q 026037 21 LATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWART 76 (244)
Q Consensus 21 ~~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwaRt 76 (244)
...|+|+|+.+.+|-+-+....|.+... ..|+||+...++ .+.|..|=-.
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~~r 57 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWLFR 57 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEEEE
Confidence 4789999999999999988877776654 479999987654 4667777543
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=71.36 E-value=3.6 Score=38.54 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=27.6
Q ss_pred ceEEEEeecCCCCcccccccccccCCCceeccCC
Q 026037 110 SLVEFTIAADKGQDFFDLSLVDGFNLPLSVAPQG 143 (244)
Q Consensus 110 TlaEftl~~~~g~d~YDVSlVdG~NlP~~i~p~~ 143 (244)
..+|||++. +.-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 358999985 57899999999999999998765
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=66.15 E-value=3.6 Score=38.54 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=26.5
Q ss_pred chhhHHHHhhCC--CcccccCCCCC---cceecCCCCceEEE
Q 026037 205 TKYSKIFKDQCP--QAYSYAYDDRT---STFSCTGGPNYDIT 241 (244)
Q Consensus 205 t~ys~~fK~~CP--~AYsya~Dd~t---s~~tC~~~~~y~Vt 241 (244)
+.|++++++.-. .||.|||||-. ++.+-......+|+
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 579999999997 78999999843 34444444455554
No 14
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=63.65 E-value=7.2 Score=33.00 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=31.4
Q ss_pred cceEEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEecCCCCceeeee
Q 026037 20 HLATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLDVPSPWKGRFWA 74 (244)
Q Consensus 20 ~~~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriwa 74 (244)
....+.|+|+++.+|-+-+..-.|.+... ..|+||+.+.++ .+.|..|=
T Consensus 13 ~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW~ 61 (156)
T PF01847_consen 13 EPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPWV 61 (156)
T ss_dssp SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EEE
T ss_pred CceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcEE
Confidence 35789999999999988888877776654 469999998876 35566663
No 15
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.89 E-value=16 Score=29.02 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEE
Q 026037 21 LATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTL 62 (244)
Q Consensus 21 ~~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~ 62 (244)
.+-|+|-|+-++.|++++.-..+..-...+-+.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 356899999999999999654444444556789999998777
No 16
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=57.16 E-value=9.9 Score=36.19 Aligned_cols=22 Identities=32% Similarity=0.773 Sum_probs=19.4
Q ss_pred chhhHHHHhhCC--CcccccCCCC
Q 026037 205 TKYSKIFKDQCP--QAYSYAYDDR 226 (244)
Q Consensus 205 t~ys~~fK~~CP--~AYsya~Dd~ 226 (244)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999994
No 17
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=56.82 E-value=11 Score=36.17 Aligned_cols=22 Identities=36% Similarity=0.896 Sum_probs=19.9
Q ss_pred chhhHHHHhhCC--CcccccCCCC
Q 026037 205 TKYSKIFKDQCP--QAYSYAYDDR 226 (244)
Q Consensus 205 t~ys~~fK~~CP--~AYsya~Dd~ 226 (244)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 679999999998 7899999996
No 18
>PHA03094 dUTPase; Provisional
Probab=43.44 E-value=27 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=24.3
Q ss_pred CceEecCCCeEE------EecCCCCceeeeeeecc
Q 026037 50 NGFELASKAKKT------LDVPSPWKGRFWARTQC 78 (244)
Q Consensus 50 ~g~~L~~G~s~s------~~vp~~WsGriwaRtgC 78 (244)
..+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 34 ~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 34 YDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CCeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 357899999887 77899999999999753
No 19
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=33.07 E-value=59 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=23.9
Q ss_pred EEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEe
Q 026037 23 TITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLD 63 (244)
Q Consensus 23 t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~ 63 (244)
=-.+.|+|+.+|-+-+.=..|...+ -..++||+-.+|.
T Consensus 16 YT~v~N~Ca~tvsVtV~Y~dG~~~P---Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 16 YTDVTNGCADTVSVTVEYTDGQEVP---CRVIPPGDIATFP 53 (68)
T ss_dssp EEEEEE-SSS-EEEEEEETTS-CEE---EEEE-TTEEEEEE
T ss_pred EEEeeCCCcccEEEEEEEeCCCcce---eEEeCCCCEEEec
Confidence 3458999999988877554554332 4788999987774
No 20
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=28.04 E-value=66 Score=22.79 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=17.0
Q ss_pred eEecCCCeEEEecCCCC-----ceeeee
Q 026037 52 FELASKAKKTLDVPSPW-----KGRFWA 74 (244)
Q Consensus 52 ~~L~~G~s~s~~vp~~W-----sGriwa 74 (244)
|+|.+|+..++....+. +|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888888876654 378884
No 21
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=26.92 E-value=21 Score=30.01 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=7.9
Q ss_pred cccccCCCce
Q 026037 129 LVDGFNLPLS 138 (244)
Q Consensus 129 lVdG~NlP~~ 138 (244)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998555
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.88 E-value=50 Score=25.54 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=10.4
Q ss_pred CcchHHH-HHH-H-HHHHhh-cccceEE
Q 026037 1 MMNTRAI-FCL-T-FSFLIS-GAHLATI 24 (244)
Q Consensus 1 m~~~~~~-~~~-~-~~~~~~-~a~~~t~ 24 (244)
|.+..++ |+| | ++||++ .++++..
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6655444 333 3 333433 3344444
No 23
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=25.72 E-value=1.3e+02 Score=23.67 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=37.0
Q ss_pred hcccceEEEEEeCCCCcccceeec-----CC----------CC-ccc-cCCceEecCCCeEEEecC-CCCceeeee
Q 026037 17 SGAHLATITFTNNCQNTIWPGALT-----AD----------GG-AQL-SENGFELASKAKKTLDVP-SPWKGRFWA 74 (244)
Q Consensus 17 ~~a~~~t~ti~N~C~~tVw~~~~~-----~~----------g~-~~~-~~~g~~L~~G~s~s~~vp-~~WsGriwa 74 (244)
+.-...++.|+|.-.-+|++|+.- |. |. -.+ ..+....+||+++++++- -+=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 345678999999999999999741 11 11 011 234567789999998863 232345554
No 24
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=24.95 E-value=1.6e+02 Score=19.05 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=25.2
Q ss_pred EEEEEeCCCCccccee-ecCCCCccccCCceEecCCCeEEEec
Q 026037 23 TITFTNNCQNTIWPGA-LTADGGAQLSENGFELASKAKKTLDV 64 (244)
Q Consensus 23 t~ti~N~C~~tVw~~~-~~~~g~~~~~~~g~~L~~G~s~s~~v 64 (244)
+|+|+|.=..++-.-- .+..|--...-.-..|+||++..+.+
T Consensus 1 ~F~~~N~g~~~L~I~~v~tsCgCt~~~~~~~~i~PGes~~i~v 43 (45)
T PF07610_consen 1 TFEFTNTGDSPLVITDVQTSCGCTTAEYSKKPIAPGESGKIKV 43 (45)
T ss_pred CEEEEECCCCcEEEEEeeEccCCEEeeCCcceECCCCEEEEEE
Confidence 4778887777765542 23333222222246799999988865
No 25
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=24.84 E-value=1.4e+02 Score=23.57 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=36.9
Q ss_pred hcccceEEEEEeCCCCcccceeec-----CC----------CC-cc-ccCCceEecCCCeEEEecC-CCCceeeee
Q 026037 17 SGAHLATITFTNNCQNTIWPGALT-----AD----------GG-AQ-LSENGFELASKAKKTLDVP-SPWKGRFWA 74 (244)
Q Consensus 17 ~~a~~~t~ti~N~C~~tVw~~~~~-----~~----------g~-~~-~~~~g~~L~~G~s~s~~vp-~~WsGriwa 74 (244)
+.-...+++|+|.-.-+|++|+.- |. |. -. +..+....+||+++++++- -+=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 344578999999999999999741 11 11 01 1234567789999998863 232345554
No 26
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=24.25 E-value=42 Score=27.48 Aligned_cols=17 Identities=35% Similarity=0.886 Sum_probs=13.2
Q ss_pred CCccccccccCCCccccC
Q 026037 84 GKFTCATADCGSGQVTCN 101 (244)
Q Consensus 84 g~~~C~TGdCgsg~l~C~ 101 (244)
+.+.|+-|||| |.|.|.
T Consensus 83 g~Gp~~PGdCG-g~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCG-GILRCK 99 (127)
T ss_dssp EE-SSSTT-TC-SEEEET
T ss_pred ecccCCCCCCC-ceeEeC
Confidence 45789999999 999997
No 27
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=23.43 E-value=1.8e+02 Score=21.52 Aligned_cols=47 Identities=17% Similarity=0.028 Sum_probs=29.7
Q ss_pred cccceEEEEEeCCCCcccceeecCC-CCccc--cCCceEecCCCeEEEec
Q 026037 18 GAHLATITFTNNCQNTIWPGALTAD-GGAQL--SENGFELASKAKKTLDV 64 (244)
Q Consensus 18 ~a~~~t~ti~N~C~~tVw~~~~~~~-g~~~~--~~~g~~L~~G~s~s~~v 64 (244)
....++|+|+|....+.-.-+.... ....+ ....-.|+||.+.++.|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 4457899999999987644443221 11111 12234799999988886
No 28
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=23.30 E-value=88 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.6
Q ss_pred eEecCCCeEEEecCCCCceeeeeee
Q 026037 52 FELASKAKKTLDVPSPWKGRFWART 76 (244)
Q Consensus 52 ~~L~~G~s~s~~vp~~WsGriwaRt 76 (244)
..|++|+++++.+|.+|..-++-..
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~ 28 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLE 28 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEE
T ss_pred EEECCCCEEEeecCCCCEEEEEEEE
Confidence 6789999999999999998888776
No 29
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=23.13 E-value=1e+02 Score=22.48 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceEecCCCeEE------EecCCCCceeeeeeec
Q 026037 51 GFELASKAKKT------LDVPSPWKGRFWARTQ 77 (244)
Q Consensus 51 g~~L~~G~s~s------~~vp~~WsGriwaRtg 77 (244)
.+.|.|+++.. +.+|.++.|.|++|.+
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs 45 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSS 45 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCch
Confidence 36777776554 3468899999999864
No 30
>smart00783 A_amylase_inhib Alpha amylase inhibitor. Alpha amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases.
Probab=22.24 E-value=1.3e+02 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=26.2
Q ss_pred eEEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEe
Q 026037 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLD 63 (244)
Q Consensus 22 ~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~ 63 (244)
|=-.+.|+|+.+|-+-+.=..|...+ -..++||+-.+|.
T Consensus 16 RYT~v~N~C~~tvsVtV~Y~dg~~~p---Cr~~~PG~~~Tf~ 54 (69)
T smart00783 16 RYTFVTNGCSETVSVTVVYTDGTWGP---CRTAAPGDITTFG 54 (69)
T ss_pred EEEeecCCCcccEEEEEEEeCCCcce---eEeeCCCCEEEec
Confidence 33457899999988876544443322 4788899876653
No 31
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=21.88 E-value=1.1e+02 Score=21.38 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=18.5
Q ss_pred HHHHhhcccceEEEEEeCCCCcc--ccee
Q 026037 12 FSFLISGAHLATITFTNNCQNTI--WPGA 38 (244)
Q Consensus 12 ~~~~~~~a~~~t~ti~N~C~~tV--w~~~ 38 (244)
++.+.++-.++..+-.|||+|+- .|++
T Consensus 13 vl~~Lt~CTG~v~Nk~knCsYDYllHPAi 41 (56)
T PF13978_consen 13 VLATLTACTGHVENKEKNCSYDYLLHPAI 41 (56)
T ss_pred HHHHHhhccceeeccCCCCcceeeecchh
Confidence 33444566778888899999983 4444
No 32
>PLN02547 dUTP pyrophosphatase
Probab=21.73 E-value=1.2e+02 Score=25.46 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=22.1
Q ss_pred CceEecCCCeE------EEecCCCCceeeeeeec
Q 026037 50 NGFELASKAKK------TLDVPSPWKGRFWARTQ 77 (244)
Q Consensus 50 ~g~~L~~G~s~------s~~vp~~WsGriwaRtg 77 (244)
....|.|++.. .+.+|.+|.|.|++|.+
T Consensus 45 ~d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSg 78 (157)
T PLN02547 45 YDTVVPARGKALVPTDLSIAIPEGTYARIAPRSG 78 (157)
T ss_pred CCeEECCCCEEEEEeceEEEcCCCeEEEEEcccc
Confidence 35678888876 45579999999999965
No 33
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=21.50 E-value=1.1e+02 Score=19.66 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=11.6
Q ss_pred cCCccccccCCCCcEecc
Q 026037 161 VCPSELAVKGSDGNVIAC 178 (244)
Q Consensus 161 ~CP~~l~v~~~~g~~vgC 178 (244)
.||.....++.+|+++-|
T Consensus 2 ~Cp~G~p~~~~~~~~~~C 19 (45)
T PF14625_consen 2 PCPNGEPYLDSNGQPVSC 19 (45)
T ss_pred cCccCcccccCCCCeeEC
Confidence 477765555556777777
No 34
>KOG4710 consensus E3 ubiquitin ligase, VHL component (von Hippel-Lindau tumor suppressor in humans) [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=1.4e+02 Score=25.34 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCcccceeecCCCCccccCCceEecCCCeEEEe
Q 026037 22 ATITFTNNCQNTIWPGALTADGGAQLSENGFELASKAKKTLD 63 (244)
Q Consensus 22 ~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~ 63 (244)
..+.|-|.|.++|-+-++...+.|+.. -+|+|++...|.
T Consensus 26 v~V~F~Nr~~r~vd~~Wln~~~~p~~Y---~TL~p~~~~rI~ 64 (170)
T KOG4710|consen 26 VYVLFANRTYRTVDLYWLNERERPNMY---LTLKPFEEVRIN 64 (170)
T ss_pred EEEEEecCCCceeeeEEECCCCCCCcc---cccCCCcceeee
Confidence 468899999999999998877776654 468999877765
No 35
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=20.88 E-value=1.4e+02 Score=21.26 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=10.3
Q ss_pred ccceEEEEEeCCCCccc
Q 026037 19 AHLATITFTNNCQNTIW 35 (244)
Q Consensus 19 a~~~t~ti~N~C~~tVw 35 (244)
....+++|.|....++-
T Consensus 6 ~~~~~~tv~N~g~~~~~ 22 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT 22 (78)
T ss_dssp EEEEEEEEE--SSS-BS
T ss_pred EEEEEEEEEECCCCcee
Confidence 34578999999987654
No 36
>PHA02703 ORF007 dUTPase; Provisional
Probab=20.66 E-value=1.3e+02 Score=25.55 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=22.9
Q ss_pred CceEecCCCeE------EEecCCCCceeeeeeecc
Q 026037 50 NGFELASKAKK------TLDVPSPWKGRFWARTQC 78 (244)
Q Consensus 50 ~g~~L~~G~s~------s~~vp~~WsGriwaRtgC 78 (244)
....|+||+.. .+.+|.+|.|.|++|.+-
T Consensus 42 ~d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsl 76 (165)
T PHA02703 42 CDCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGL 76 (165)
T ss_pred CCeEECCCCEEEEeCCeEEEcCCCeEEEEECCccc
Confidence 35788999874 556799999999999653
No 37
>PRK13203 ureB urease subunit beta; Reviewed
Probab=20.38 E-value=2e+02 Score=22.75 Aligned_cols=58 Identities=14% Similarity=0.194 Sum_probs=36.7
Q ss_pred hcccceEEEEEeCCCCcccceeec-----CC----------CC-cc-ccCCceEecCCCeEEEecC-CCCceeeee
Q 026037 17 SGAHLATITFTNNCQNTIWPGALT-----AD----------GG-AQ-LSENGFELASKAKKTLDVP-SPWKGRFWA 74 (244)
Q Consensus 17 ~~a~~~t~ti~N~C~~tVw~~~~~-----~~----------g~-~~-~~~~g~~L~~G~s~s~~vp-~~WsGriwa 74 (244)
..-...++.|+|.-.-+|++|+.- |. |. -. +..+....+||+++++++- -+=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 344578999999999999999741 11 11 01 1234567789999998863 232245554
Done!