Query 026038
Match_columns 244
No_of_seqs 129 out of 1126
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 99.9 1.7E-22 3.7E-27 185.5 15.9 147 89-236 2-152 (308)
2 PRK12869 ubiA protoheme IX far 99.9 3.1E-22 6.7E-27 181.1 14.9 134 99-237 1-137 (279)
3 PRK09573 (S)-2,3-di-O-geranylg 99.9 2.2E-22 4.7E-27 181.6 13.5 132 99-236 2-134 (279)
4 PRK04375 protoheme IX farnesyl 99.9 7.4E-22 1.6E-26 179.9 15.2 135 98-237 8-145 (296)
5 PLN02878 homogentisate phytylt 99.9 2.1E-22 4.4E-27 182.1 11.1 115 120-234 4-118 (280)
6 COG0109 CyoE Polyprenyltransfe 99.9 8E-22 1.7E-26 179.4 13.0 135 97-236 15-152 (304)
7 PRK13362 protoheme IX farnesyl 99.9 2.5E-21 5.4E-26 177.7 16.3 134 98-236 11-147 (306)
8 TIGR01473 cyoE_ctaB protoheme 99.9 2.3E-21 5E-26 175.0 14.8 133 101-237 1-136 (280)
9 PRK12882 ubiA prenyltransferas 99.9 1.2E-21 2.7E-26 176.3 13.0 132 99-236 3-135 (276)
10 PRK12883 ubiA prenyltransferas 99.9 2.3E-21 4.9E-26 174.7 14.3 132 99-236 2-134 (277)
11 PRK12324 phosphoribose diphosp 99.9 4E-21 8.6E-26 175.6 14.9 136 98-238 9-146 (295)
12 PRK12884 ubiA prenyltransferas 99.9 6.8E-21 1.5E-25 171.3 15.1 130 98-234 2-131 (279)
13 PRK12874 ubiA prenyltransferas 99.9 7.5E-21 1.6E-25 173.3 15.2 136 96-236 4-144 (291)
14 PLN00012 chlorophyll synthetas 99.9 2.1E-20 4.5E-25 175.9 17.5 140 94-236 79-230 (375)
15 TIGR01476 chlor_syn_BchG bacte 99.8 5.6E-21 1.2E-25 172.6 12.2 136 101-238 1-141 (283)
16 PRK08238 hypothetical protein; 99.8 1.3E-20 2.8E-25 182.2 13.9 138 96-238 187-326 (479)
17 PRK12886 ubiA prenyltransferas 99.8 2.6E-20 5.6E-25 169.8 15.0 134 96-236 4-139 (291)
18 PRK07566 bacteriochlorophyll/c 99.8 7.3E-20 1.6E-24 168.3 15.6 141 96-239 23-168 (314)
19 PRK13106 ubiA prenyltransferas 99.8 5.8E-20 1.2E-24 168.3 14.8 132 96-234 11-144 (300)
20 PRK12847 ubiA 4-hydroxybenzoat 99.8 1E-19 2.2E-24 164.8 16.2 134 97-236 4-142 (285)
21 TIGR01475 ubiA_other putative 99.8 5.1E-20 1.1E-24 166.4 13.8 130 100-236 2-133 (282)
22 PRK12878 ubiA 4-hydroxybenzoat 99.8 1E-19 2.2E-24 167.5 16.0 137 95-236 25-169 (314)
23 PRK12870 ubiA 4-hydroxybenzoat 99.8 5.5E-20 1.2E-24 167.5 13.3 132 98-236 7-143 (290)
24 PRK12895 ubiA prenyltransferas 99.8 1E-19 2.2E-24 165.6 12.8 130 99-235 2-133 (286)
25 PRK12848 ubiA 4-hydroxybenzoat 99.8 2.1E-19 4.6E-24 162.7 14.5 132 98-236 3-139 (282)
26 TIGR02056 ChlG chlorophyll syn 99.8 5E-19 1.1E-23 162.2 15.8 137 95-236 11-161 (306)
27 COG0382 UbiA 4-hydroxybenzoate 99.8 7.3E-19 1.6E-23 159.4 16.1 133 99-238 12-146 (289)
28 PRK12392 bacteriochlorophyll c 99.8 9E-19 1.9E-23 162.4 16.1 135 96-232 8-153 (331)
29 PLN02809 4-hydroxybenzoate non 99.8 1.1E-18 2.5E-23 159.0 15.0 134 98-236 4-142 (289)
30 PLN02776 prenyltransferase 99.8 7.8E-19 1.7E-23 163.2 13.3 125 106-236 1-128 (341)
31 PRK12876 ubiA prenyltransferas 99.8 1.7E-18 3.7E-23 158.5 14.7 134 98-236 2-144 (300)
32 PRK12888 ubiA prenyltransferas 99.8 1.3E-18 2.9E-23 158.1 13.4 131 100-235 2-135 (284)
33 TIGR01474 ubiA_proteo 4-hydrox 99.8 3E-18 6.4E-23 155.3 14.7 131 101-236 2-137 (281)
34 PRK05951 ubiA prenyltransferas 99.8 1.1E-17 2.4E-22 152.7 15.2 140 99-242 3-154 (296)
35 PRK12873 ubiA prenyltransferas 99.8 6E-18 1.3E-22 154.6 13.3 132 98-236 5-145 (294)
36 PRK13595 ubiA prenyltransferas 99.8 2E-17 4.2E-22 150.9 15.6 138 97-241 9-152 (292)
37 PRK06080 1,4-dihydroxy-2-napht 99.7 4.4E-17 9.6E-22 147.7 14.8 134 99-237 2-146 (293)
38 PRK12871 ubiA prenyltransferas 99.7 2.2E-16 4.7E-21 144.5 14.6 126 98-226 3-142 (297)
39 PRK13387 1,4-dihydroxy-2-napht 99.7 1.9E-16 4.2E-21 146.0 14.3 133 100-236 3-146 (317)
40 PRK13592 ubiA prenyltransferas 99.6 3.1E-15 6.7E-20 136.6 12.8 96 140-241 47-149 (299)
41 TIGR00751 menA 1,4-dihydroxy-2 99.5 1.2E-13 2.7E-18 125.7 14.1 128 108-239 1-144 (284)
42 PLN02922 prenyltransferase 99.5 1.9E-13 4.1E-18 126.2 15.1 135 98-237 13-156 (315)
43 PRK07419 1,4-dihydroxy-2-napht 99.5 1.6E-13 3.4E-18 126.2 13.8 136 98-239 10-154 (304)
44 PF01040 UbiA: UbiA prenyltran 99.5 9.2E-14 2E-18 121.5 9.6 121 114-240 3-128 (257)
45 PRK12875 ubiA prenyltransferas 99.5 7.6E-13 1.6E-17 120.5 15.2 132 98-236 6-145 (282)
46 KOG1380 Heme A farnesyltransfe 99.5 6.4E-15 1.4E-19 135.0 1.3 131 98-235 92-225 (409)
47 PRK13105 ubiA prenyltransferas 99.4 1.7E-12 3.6E-17 118.3 14.3 130 100-237 1-138 (282)
48 KOG1381 Para-hydroxybenzoate-p 99.4 6.8E-14 1.5E-18 125.8 4.9 135 97-236 61-200 (353)
49 COG1575 MenA 1,4-dihydroxy-2-n 99.4 2.2E-12 4.7E-17 118.0 14.0 135 98-236 6-153 (303)
50 TIGR02235 menA_cyano-plnt 1,4- 99.4 3.5E-12 7.6E-17 116.2 15.0 131 103-239 2-141 (285)
51 PRK12872 ubiA prenyltransferas 99.3 8.4E-12 1.8E-16 112.5 10.7 119 98-228 2-125 (285)
52 PRK13591 ubiA prenyltransferas 99.2 2.8E-10 6.1E-15 104.7 14.0 74 146-226 65-138 (307)
53 KOG4581 Predicted membrane pro 97.9 3.1E-06 6.8E-11 75.4 1.0 144 98-242 59-212 (359)
54 PRK13591 ubiA prenyltransferas 95.9 0.29 6.2E-06 45.6 14.0 70 157-226 197-272 (307)
55 PRK07419 1,4-dihydroxy-2-napht 93.9 0.8 1.7E-05 42.4 11.1 46 148-196 183-229 (304)
56 COG1575 MenA 1,4-dihydroxy-2-n 93.8 0.81 1.8E-05 42.5 10.8 51 143-196 180-231 (303)
57 TIGR01474 ubiA_proteo 4-hydrox 93.5 1.1 2.4E-05 40.7 11.1 38 145-182 166-204 (281)
58 PRK12872 ubiA prenyltransferas 93.4 1.4 3E-05 39.7 11.6 48 146-196 168-216 (285)
59 TIGR01475 ubiA_other putative 93.1 0.64 1.4E-05 42.1 9.0 35 146-180 165-200 (282)
60 PRK06080 1,4-dihydroxy-2-napht 92.5 2 4.3E-05 38.9 11.4 50 146-198 175-225 (293)
61 PRK13387 1,4-dihydroxy-2-napht 92.0 0.96 2.1E-05 42.0 8.8 52 144-198 194-246 (317)
62 PRK12847 ubiA 4-hydroxybenzoat 91.7 2.3 5.1E-05 38.5 10.9 37 145-181 171-208 (285)
63 PLN02922 prenyltransferase 91.7 0.94 2E-05 42.1 8.4 49 146-197 195-244 (315)
64 TIGR02235 menA_cyano-plnt 1,4- 91.0 3.1 6.8E-05 38.0 11.0 49 147-198 169-218 (285)
65 PLN00012 chlorophyll synthetas 90.9 3.6 7.8E-05 39.3 11.6 34 147-180 260-294 (375)
66 PRK12848 ubiA 4-hydroxybenzoat 89.9 4.8 0.0001 36.5 11.2 38 145-182 168-206 (282)
67 PRK12888 ubiA prenyltransferas 89.9 5.2 0.00011 36.5 11.4 35 146-180 166-201 (284)
68 PRK13106 ubiA prenyltransferas 89.6 1.3 2.8E-05 40.9 7.2 51 145-195 183-234 (300)
69 PRK12886 ubiA prenyltransferas 89.5 1.4 3E-05 40.4 7.3 35 147-181 170-205 (291)
70 PRK12871 ubiA prenyltransferas 89.0 5.3 0.00011 36.8 10.8 36 146-181 182-218 (297)
71 PRK09573 (S)-2,3-di-O-geranylg 88.8 1.9 4E-05 39.0 7.6 34 147-180 162-196 (279)
72 PRK07566 bacteriochlorophyll/c 88.8 2.5 5.4E-05 39.1 8.6 32 149-180 199-231 (314)
73 PRK12875 ubiA prenyltransferas 88.6 8.4 0.00018 35.3 11.7 57 146-205 172-229 (282)
74 TIGR00751 menA 1,4-dihydroxy-2 88.4 5.8 0.00013 36.3 10.6 47 148-197 173-220 (284)
75 PRK13105 ubiA prenyltransferas 88.2 3.1 6.8E-05 38.1 8.7 57 146-205 167-224 (282)
76 PRK12870 ubiA 4-hydroxybenzoat 88.0 6.4 0.00014 36.0 10.7 40 145-184 172-212 (290)
77 PRK12392 bacteriochlorophyll c 87.2 3.1 6.8E-05 39.0 8.2 38 146-183 187-225 (331)
78 PRK12884 ubiA prenyltransferas 86.9 4 8.8E-05 36.6 8.6 34 147-180 163-197 (279)
79 PRK12887 ubiA tocopherol phyty 86.6 5 0.00011 37.1 9.2 36 146-181 189-225 (308)
80 PRK12878 ubiA 4-hydroxybenzoat 86.5 11 0.00023 35.0 11.3 35 146-180 199-234 (314)
81 TIGR01476 chlor_syn_BchG bacte 86.2 4 8.8E-05 36.8 8.2 31 150-180 172-203 (283)
82 PRK12882 ubiA prenyltransferas 86.0 6.9 0.00015 35.2 9.6 45 147-194 165-210 (276)
83 TIGR02056 ChlG chlorophyll syn 85.9 4.3 9.4E-05 37.3 8.4 42 149-193 193-235 (306)
84 PRK12874 ubiA prenyltransferas 85.5 11 0.00024 34.5 10.8 35 146-180 174-209 (291)
85 PRK12895 ubiA prenyltransferas 85.4 16 0.00035 33.5 11.8 36 146-181 166-202 (286)
86 COG0382 UbiA 4-hydroxybenzoate 82.8 12 0.00026 33.9 9.7 49 143-194 171-220 (289)
87 PRK12883 ubiA prenyltransferas 81.6 7 0.00015 35.2 7.7 32 149-180 164-196 (277)
88 PF01040 UbiA: UbiA prenyltran 81.5 11 0.00024 32.5 8.7 30 147-176 154-184 (257)
89 PRK05951 ubiA prenyltransferas 81.2 18 0.00038 33.1 10.3 35 149-186 181-216 (296)
90 PRK12873 ubiA prenyltransferas 80.9 24 0.00051 32.6 11.0 34 147-180 178-212 (294)
91 PRK12876 ubiA prenyltransferas 80.1 38 0.00083 31.4 12.1 31 152-182 185-216 (300)
92 PLN02809 4-hydroxybenzoate non 69.4 87 0.0019 28.7 11.5 25 157-181 184-209 (289)
93 PRK04375 protoheme IX farnesyl 67.5 77 0.0017 28.9 10.8 34 147-180 175-209 (296)
94 TIGR01473 cyoE_ctaB protoheme 66.7 32 0.00069 31.0 8.0 21 160-180 179-200 (280)
95 PRK12869 ubiA protoheme IX far 65.7 27 0.00059 31.6 7.4 22 159-180 179-201 (279)
96 COG0818 DgkA Diacylglycerol ki 59.3 96 0.0021 25.2 9.0 79 88-177 7-91 (123)
97 PLN02878 homogentisate phytylt 58.3 65 0.0014 29.7 8.4 45 147-194 164-209 (280)
98 PRK13362 protoheme IX farnesyl 58.2 1.5E+02 0.0033 27.3 11.3 47 150-198 184-231 (306)
99 PLN02776 prenyltransferase 48.0 2.5E+02 0.0054 26.6 11.3 30 171-200 184-215 (341)
100 COG4125 Predicted membrane pro 45.9 1.1E+02 0.0025 25.5 7.1 49 154-205 52-104 (149)
101 PF11990 DUF3487: Protein of u 45.1 1E+02 0.0022 24.8 6.7 41 166-208 8-52 (121)
102 PRK10299 PhoPQ regulatory prot 42.8 37 0.0008 23.0 3.2 19 150-168 16-34 (47)
103 PF10777 YlaC: Inner membrane 40.6 22 0.00048 29.9 2.3 25 157-181 3-31 (155)
104 PRK09669 putative symporter Ya 40.3 3.1E+02 0.0068 25.6 10.7 43 157-199 343-385 (444)
105 TIGR03750 conj_TIGR03750 conju 37.8 1.7E+02 0.0038 23.3 6.9 35 166-202 5-39 (111)
106 COG4147 DhlC Predicted symport 36.7 26 0.00057 34.9 2.4 28 142-169 356-383 (529)
107 COG1033 Predicted exporters of 35.4 1.7E+02 0.0037 30.6 8.2 64 101-164 212-277 (727)
108 TIGR00844 c_cpa1 na(+)/h(+) an 35.0 2.4E+02 0.0053 29.9 9.2 6 146-151 136-141 (810)
109 KOG4112 Signal peptidase subun 34.8 1.6E+02 0.0034 23.1 5.9 53 180-234 22-75 (101)
110 PF01219 DAGK_prokar: Prokaryo 34.7 1.8E+02 0.004 22.6 6.5 32 146-177 46-77 (104)
111 PRK10429 melibiose:sodium symp 33.1 4.3E+02 0.0093 25.0 10.9 45 156-200 347-391 (473)
112 PF12270 Cyt_c_ox_IV: Cytochro 32.5 2.9E+02 0.0063 22.9 10.7 49 164-212 65-115 (137)
113 PRK13595 ubiA prenyltransferas 30.6 2.1E+02 0.0046 26.5 7.2 54 149-205 179-233 (292)
114 TIGR00267 conserved hypothetic 30.1 3.3E+02 0.0072 22.8 8.6 21 142-162 31-51 (169)
115 COG5336 Uncharacterized protei 27.1 2E+02 0.0044 23.1 5.5 43 179-221 41-89 (116)
116 TIGR02762 TraL_TIGR type IV co 26.6 85 0.0018 24.0 3.3 32 167-202 7-38 (95)
117 PRK12911 bifunctional preprote 26.6 2.9E+02 0.0063 31.1 8.3 16 149-164 1297-1315(1403)
118 PF06645 SPC12: Microsomal sig 24.2 2.7E+02 0.0058 20.4 5.5 19 187-205 14-32 (76)
119 PF10003 DUF2244: Integral mem 23.9 3.7E+02 0.008 21.7 6.8 24 178-201 4-27 (140)
120 PF12046 DUF3529: Protein of u 23.6 1.7E+02 0.0037 25.2 4.9 52 173-225 68-128 (173)
121 PF14045 YIEGIA: YIEGIA protei 22.7 3.4E+02 0.0073 25.2 6.9 88 149-239 62-159 (285)
122 PF04341 DUF485: Protein of un 22.5 3.4E+02 0.0073 20.3 8.2 38 133-170 52-89 (91)
123 PF02319 E2F_TDP: E2F/DP famil 20.7 38 0.00082 24.4 0.3 13 228-240 42-54 (71)
124 PF11808 DUF3329: Domain of un 20.3 3.8E+02 0.0082 20.0 6.1 19 190-208 12-30 (90)
125 PLN02953 phosphatidate cytidyl 20.2 1.7E+02 0.0037 28.4 4.7 48 164-212 77-126 (403)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.89 E-value=1.7e-22 Score=185.49 Aligned_cols=147 Identities=31% Similarity=0.364 Sum_probs=117.8
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 026038 89 APSFLEVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEID 167 (244)
Q Consensus 89 ~~~~~~~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diD 167 (244)
|++.|+...+.+++|+|++|||+.+++.++++.+++++.+.... .....+..++.++++...++.+++++|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45678888889999999999999999999998888776432221 12212334455556666777777779999999999
Q ss_pred ccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHH
Q 026038 168 KINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNII 236 (244)
Q Consensus 168 rinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv 236 (244)
++|||+||+++|++|+++++.+.+++.++|+++++.+|++.+.++ +.+++++++||. ++|+..+.+.+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys~pP~rlKr~~~~~~~ 152 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYSLPPIRLKRFPLLAAL 152 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHcCCchhhcccchhHHH
Confidence 999999999999999999999999999999999999997765554 456788999996 48888887633
No 2
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.88 E-value=3.1e-22 Score=181.07 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=112.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCcc
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPL 176 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPL 176 (244)
++|+|++++||++.....+++++|++++.+. .+++.. +++++++++++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 3689999999999999999999999998532 223322 3556779999999999999999999999987 58999
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038 177 ASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN 237 (244)
Q Consensus 177 psG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~ 237 (244)
|+|++|++||+.+++++.++|+.++++ +|+....+..++.++++++|+.++||.+++|++=
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v 137 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVI 137 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHH
Confidence 999999999999999999999999887 8876544444556678899999899999998763
No 3
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.88 E-value=2.2e-22 Score=181.60 Aligned_cols=132 Identities=22% Similarity=0.274 Sum_probs=113.1
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps 178 (244)
++++|++++||+++...++++++|++++.+. .+++. .+++++++++++++++|++|||+|+|+|++|+|+||+|+
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3789999999999999999999999998532 22332 135677899999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchh-hHH
Q 026038 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILY-NII 236 (244)
Q Consensus 179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~-~iv 236 (244)
|++|+++|+.++.++.++|+++++++|++.+.++++ +++++++|+..+||.... |++
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Ys~~lKr~~~~~~~~ 134 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALL-NSILLYLYAKDLKKTGLIGNLI 134 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHhcCCcHHHHH
Confidence 999999999999999999999999999888777655 455689999878998875 665
No 4
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.88 E-value=7.4e-22 Score=179.94 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=112.8
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RP 175 (244)
+++++|++++||+++....+++++|.+++.+. .+++.. +++++++++++++++|++|||+|+|+|++|+ |+||
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 56999999999999999999999999998532 233322 3567789999999999999999999999987 5999
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN 237 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~ 237 (244)
+|+|++|++||+.+++++.++|++++++ +|+..+.++++..+.+.++|+.++||.+++|++-
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v 145 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVI 145 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHH
Confidence 9999999999999999999999988755 5766666555444446779998899999988654
No 5
>PLN02878 homogentisate phytyltransferase
Probab=99.88 E-value=2.1e-22 Score=182.09 Aligned_cols=115 Identities=44% Similarity=0.706 Sum_probs=101.8
Q ss_pred HHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHH
Q 026038 120 TSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (244)
Q Consensus 120 l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~ 199 (244)
+..+++|.+..+++++.++.+++.++++++++|.+..++|||+|+|+||+|||+||+|||++|+++|+.+..++.++|++
T Consensus 4 ~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 4 TSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred hHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456666655566666777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038 200 LAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN 234 (244)
Q Consensus 200 la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~ 234 (244)
+++.+|+++++++++.+++++++||..+|++|+.-
T Consensus 84 la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~ 118 (280)
T PLN02878 84 MGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKR 118 (280)
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHH
Confidence 99999988888888888789999999888888765
No 6
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8e-22 Score=179.38 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CC
Q 026038 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YL 174 (244)
Q Consensus 97 ~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~R 174 (244)
..++|+|++++||+......++++.|+++|.. ...++.. ++.++++..+..++++++|+++|+|+|++|+| +|
T Consensus 15 ~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 15 RSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred HHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 36799999999999999999999999999974 2334433 46778999999999999999999999999987 89
Q ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 175 PLASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 175 PLpsG~IS~~~Al~~~i~l~~lgl~la-~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
|+|+|+|+|+|++.++.++.++|+.+. ++.|+.+.++++++.++++++||.++||....|||
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~Niv 152 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIV 152 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccccee
Confidence 999999999999999999999999876 77898888888888899999999999999999986
No 7
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.87 E-value=2.5e-21 Score=177.66 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=111.5
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP 175 (244)
+++++|++++||+++....+++++|++++.+. .+++.. ++.++++..+.++++|++|||+|+|+|+.|+| +||
T Consensus 11 ~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RP 85 (306)
T PRK13362 11 ASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRV 85 (306)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCC
Confidence 56899999999999999999999999998432 334432 34566799999999999999999999997653 899
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHH-HHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALA-FLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la-~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+|+|++|+++|+.+++++.++|+.++ ++.|+..+.++.++.+++.++|+.++||.++++.+
T Consensus 86 lpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~ 147 (306)
T PRK13362 86 TVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTL 147 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHH
Confidence 99999999999999999999999865 44687665555555556788999889999999876
No 8
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.87 E-value=2.3e-21 Score=175.05 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCcccC
Q 026038 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLAS 178 (244)
Q Consensus 101 k~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPLps 178 (244)
|+|++++||+++....+++++|.+++.+.. .+++.. +++++++++++++++|++|||+|+|+|+.|+ ++||+|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999985432 233322 3566789999999999999999999999987 5899999
Q ss_pred CCcCHHHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHH
Q 026038 179 GELSMGTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIIN 237 (244)
Q Consensus 179 G~IS~~~Al~~~i~l~~lgl~l-a~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~ 237 (244)
|++|+++|..+++++.++|+.+ .+++|+..+.++.++.++++++||.++||..++|++=
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v 136 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVI 136 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHH
Confidence 9999999999999999999984 5558877766665544445889998899999988763
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=1.2e-21 Score=176.31 Aligned_cols=132 Identities=24% Similarity=0.204 Sum_probs=111.7
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps 178 (244)
++++|++++||+++..+++++++|++++.+..+ +.. ..++++++.+++++++|++|||+|+|+|++|+|+||+|+
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~--~~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILS--SPS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc--hHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 478999999999999999999999999854321 111 135677899999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchh-hHH
Q 026038 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILY-NII 236 (244)
Q Consensus 179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~-~iv 236 (244)
|++|++||+.++.++.++|+++++++|+..+.++++ +++++++|+..+|+.... |++
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~-~~~~~~~Yt~~lK~~~~~g~~~ 135 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALF-NSLLLVLYAETLKGTPGLGNAS 135 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHhcccchhHHH
Confidence 999999999999999999999999999877666554 455688999889998764 553
No 10
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.87 E-value=2.3e-21 Score=174.70 Aligned_cols=132 Identities=22% Similarity=0.184 Sum_probs=111.0
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccC
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLAS 178 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLps 178 (244)
++|+|++++||+++....++++.|++++.+..+. +. .+++++++.++.++++|++|||+|+|+|++|+|+||+|+
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3789999999999999999999999988543221 21 134556788899999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcch-hhHH
Q 026038 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLIL-YNII 236 (244)
Q Consensus 179 G~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l-~~iv 236 (244)
|++|+++++.++.++.++|+++++++|++.+.++++ +.+++++|+.++||... .|++
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~-~~~~~~~Y~~~~k~~~~lg~~~ 134 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALG-AYVLMFLYAWKLKPLPFIGNVV 134 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccCCcchhhHH
Confidence 999999999999999999999999999887776654 45679999998899874 6653
No 11
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=4e-21 Score=175.59 Aligned_cols=136 Identities=24% Similarity=0.266 Sum_probs=109.4
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC--CCCCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPYLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin--kp~RP 175 (244)
+++++|++++||+.|....+.. ++.+++.+.. +.. .+..+++++++.+++.+++|++||++|+|+||+| ||+||
T Consensus 9 ~~l~~~l~L~RP~~w~~nll~~-~~~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RP 84 (295)
T PRK12324 9 NLLAGYLKLLRPKQWIKNLFVF-AAPIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRP 84 (295)
T ss_pred HHHHHHHHHhCchHHHHHHHHH-HHHHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCC
Confidence 5689999999999999988754 4445553211 111 1123456667788899999999999999999997 56999
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL 238 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~ 238 (244)
+|+|++|+++|+.++.++.++|+++++++|+..+.+ +++.+++.++||.++|+..+.|++.+
T Consensus 85 lasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~-~~~~~~~~~~Ys~~lK~~~~~d~l~v 146 (295)
T PRK12324 85 IASGVVSVSLAYILAVVLLVASLALAYLLSPKLALV-LLVYLVLNLAYSFKLKHQPVLDVFCI 146 (295)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHhcCCchhhHHHH
Confidence 999999999999999999999999999999776554 35667889999999999999987654
No 12
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=6.8e-21 Score=171.35 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=112.1
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCccc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLp 177 (244)
+++++|++++||+++....+++++|.+++.+..+ +. .+++++++.+++++++|++|||+|+|+|+.|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 4689999999999999999999999999854322 21 13566789999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN 234 (244)
Q Consensus 178 sG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~ 234 (244)
+|++|+++++.+++++.++++++++++|+..+.++++ +++++++||.++|+..+.+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Ys~~lK~~~~~~ 131 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVIL-VSVLGILYNWKLKEYGLIG 131 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhhccccchh
Confidence 9999999999999999999999999999877666554 5667999999899998643
No 13
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=7.5e-21 Score=173.33 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=113.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhccc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQS---LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~---~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp 172 (244)
.++++++|+|++||++.+.+...++.|+++|... ...+++.. +++++++++++++++|++|||+|+|+|++|+|
T Consensus 4 ~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~R 80 (291)
T PRK12874 4 FTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKL---LILGILAAVSARNFAMAFNRLVDRDIDKDNPR 80 (291)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHhhhhhccccCCCC
Confidence 4568999999999999999999999999887421 11234432 35677899999999999999999999999985
Q ss_pred --CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 --YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 --~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|++||+.+++++.++++++++++|+.++.+++ +.+++..+|+. +||...++.+
T Consensus 81 T~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~-~KR~t~~~~~ 144 (291)
T PRK12874 81 TANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY-FKRFSSLAHL 144 (291)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh-hcccccccHH
Confidence 89999999999999999999999988888888988877764 45667889995 8998887654
No 14
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.85 E-value=2.1e-20 Score=175.87 Aligned_cols=140 Identities=19% Similarity=0.124 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC
Q 026038 94 EVVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP 172 (244)
Q Consensus 94 ~~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~-~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp 172 (244)
+.+++++|.|++++||++|...+++++.|++.. +.. ++.+. ++..++.+++++.++++++|++|||+|+|+|++|+|
T Consensus 79 ~~~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~~-~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~ 156 (375)
T PLN00012 79 AQETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GNF-HWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEP 156 (375)
T ss_pred ccchHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CCC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCC
Confidence 457788999999999999999999999999853 222 11211 111235567788999999999999999999999999
Q ss_pred CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH-------cHHHHHHHHHHHHHHhhhcCC---cCCCcchh-hHH
Q 026038 173 YLPLASGELSMGTGIAICAGSALLSLALAFLS-------GSPAVLCAVIAWGLTGAAYSV---PVSGLILY-NII 236 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l-------~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~-~iv 236 (244)
+||+++|++|+++++.++++++++++.+++++ +++.+.+++ ++++++++||. ++|+.++. +++
T Consensus 157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~pPl~lKr~~~~G~v~ 230 (375)
T PLN00012 157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSAPPLKLKQNGWIGNYA 230 (375)
T ss_pred CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcCCchhhhHhccHhHHH
Confidence 99999999999999998888888877777665 333444443 45667999995 78999985 654
No 15
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.85 E-value=5.6e-21 Score=172.64 Aligned_cols=136 Identities=15% Similarity=0.007 Sum_probs=109.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCC
Q 026038 101 NAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (244)
Q Consensus 101 k~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG 179 (244)
++|++++||+++...+++++.|++++...... +++.. .++.+++++.++++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999988322222 33321 1344667999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHHHh
Q 026038 180 ELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNIINL 238 (244)
Q Consensus 180 ~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv~~ 238 (244)
++|+++++.+++++.+++++++++++.+...+..+.+++.+++||. ++|+.++ .+++--
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg 141 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVG 141 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHH
Confidence 9999999999999999999999998866623333445667999998 6899984 445433
No 16
>PRK08238 hypothetical protein; Validated
Probab=99.84 E-value=1.3e-20 Score=182.22 Aligned_cols=138 Identities=25% Similarity=0.282 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC--CCC
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN--KPY 173 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin--kp~ 173 (244)
...++++|++++|||+|.++++.. ++++++.. ..+ ...+..+++++++..++.+++|++||++|+|+||.| +++
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 446789999999999999998764 47777632 212 222223567778889999999999999999999999 469
Q ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL 238 (244)
Q Consensus 174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~ 238 (244)
||+|||++|+++|+.++.+++++|+++++++|+.. ++.+++.+++.++||.++||..+.|++-+
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~~~~~~Ys~~lKr~~~~~~~~l 326 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAF-LLVLLAYLALTLAYSLRLKRKVLVDVLTL 326 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHhhHHhcCCccccchHH
Confidence 99999999999999999999999999999999754 45556678889999999999999998754
No 17
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=2.6e-20 Score=169.77 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--C
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~ 173 (244)
+.+++++|+|++||++......+++.|+++|.+..+ ++. .+++++++.+++++++|++|||+|+|+|++|+| +
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 346799999999999999998889999999854322 221 135667899999999999999999999999985 8
Q ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
||+|+|++|++||+.+.+.+.++++++++++|++.+.++++ ++++.++|+. +||.+.++.+
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-~Kr~t~~~~~ 139 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPP-ALFFLLLYSY-CKRFTALAHV 139 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh-hhccccccHH
Confidence 99999999999999997777777767777889887777654 4555889996 7888887754
No 18
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.83 E-value=7.3e-20 Score=168.28 Aligned_cols=141 Identities=21% Similarity=0.153 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPA-FLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~-~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R 174 (244)
..+++++|++++||+++..++++++.|++.+.. . ++... .+..++.+++++.++++++|++|||+|+|+|++|+|+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA-F-GWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC-C-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 346789999999999999998888888886532 1 22211 11112345577888999999999999999999999999
Q ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHHHhh
Q 026038 175 PLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNIINLI 239 (244)
Q Consensus 175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv~~~ 239 (244)
|+++|++|+++++.++.++.++++++++++|++.+.++++ +++++++||. ++|+.++ .|++--+
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~-~~~~~~~Yt~gP~~lK~~~~~g~i~vg~ 168 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALL-GLFLAWIYSAPPLRLKQNGWLGNYAVGL 168 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH-HHHHHHHhcCCccccccccchhhHHHHH
Confidence 9999999999999999999999999999999777666544 5666899995 7899885 4776543
No 19
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.83 E-value=5.8e-20 Score=168.29 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--C
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--Y 173 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~ 173 (244)
..+++++|+|++||++.++...++++|+++|.+..+ ++.. +++++++++++++++|++|||+|+|+|++|+| +
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 446799999999999999999989999999854322 3322 35667899999999999999999999999964 8
Q ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYN 234 (244)
Q Consensus 174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~ 234 (244)
||+|+|++|++||+.+..++.+.++++++++|+.++.++.+. +++.+.|+. +||.+.+.
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~-~~~~~~Y~~-~KR~t~~~ 144 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIV-ALIAMSYPY-MKRYTAFA 144 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhH-HhcCCcch
Confidence 999999999999999988888888888888898877776543 455778995 78888775
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.83 E-value=1e-19 Score=164.85 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhchhhHHH---HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC-
Q 026038 97 KRKLNAISHVTRYYAQIN---IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (244)
Q Consensus 97 ~~~lk~~l~LtRP~~~~~---~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp- 172 (244)
.+++++|++++||+++.. ..+++++|.++|.... .+++. ..++++++++++++++|++|||+|+|+|+.|+|
T Consensus 4 ~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt 79 (285)
T PRK12847 4 LMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVART 79 (285)
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcc
Confidence 457999999999997765 4577888888885322 13332 235677899999999999999999999997664
Q ss_pred -CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 -~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|++||+.+++++.++|+++++++|+..+.++++ +++++++|+. .||....+.+
T Consensus 80 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~-~~~~~~~Y~~-~Kr~~~~~~~ 142 (285)
T PRK12847 80 KNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFI-AVILIVLYPL-MKRFFYWPQL 142 (285)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhccc-cccCCcccHH
Confidence 899999999999999999999999999999899887777655 4556999997 7888776654
No 21
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.83 E-value=5.1e-20 Score=166.42 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=107.5
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC--CCCccc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLA 177 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink--p~RPLp 177 (244)
+|+|+|++||++..+..+.+++|+++|.+.. +++.. +++++++++++++++|++|||+|+|+|++|+ |+||+|
T Consensus 2 ~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~ 76 (282)
T TIGR01475 2 FKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLV 76 (282)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCC
Confidence 6899999999999999888888999885432 23322 3567789999999999999999999999994 599999
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 178 SGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 178 sG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+|++|+++|+.+++++.++++++++++|+.++.++.+ +.+++++|+. +||...++.+
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~ 133 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLSASYFLNPLAFILSPL-VLLVLIIYPY-TKRFTFLCHY 133 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhh-HhccccccHH
Confidence 9999999999999999888888899899887666554 4555889984 7888866544
No 22
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.83 E-value=1e-19 Score=167.50 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhh---chhhHHHHHHHHHHHHHhhcccC---CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 026038 95 VVKRKLNAISHVT---RYYAQINIIVSVTSVCFLPVQSL---SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK 168 (244)
Q Consensus 95 ~~~~~lk~~l~Lt---RP~~~~~~il~~l~G~~lA~~~~---~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr 168 (244)
.+..++++|++++ ||++.....+++++|.++|.+.. ..+++. .+++++++++++++++|++|||+|+|+|+
T Consensus 25 ~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~ 101 (314)
T PRK12878 25 RLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDA 101 (314)
T ss_pred hcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567899999999 99999999999999999986421 123332 24567789999999999999999999998
Q ss_pred cCCC--CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 169 INKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 169 inkp--~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
.|+| +||+|+|++|++||+.++.++.++|+++.+.+|++.+.++++ +++++++|+. +||.+.++.+
T Consensus 102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~ 169 (314)
T PRK12878 102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIA-SLAIVAAYPF-MKRITWWPQF 169 (314)
T ss_pred CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-HHhcCCcchH
Confidence 7764 899999999999999999999999999988888877666654 4666999985 7887776643
No 23
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.83 E-value=5.5e-20 Score=167.47 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=107.0
Q ss_pred HHHHHHHHhhchhhHHHHH---HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC-C-
Q 026038 98 RKLNAISHVTRYYAQINII---VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK-P- 172 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~i---l~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink-p- 172 (244)
+++++|++++||++..++. +++++|.++|.+.. .++.. +++++++++++++++|++|||+|+|+|+.|+ +
T Consensus 7 ~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~ 81 (290)
T PRK12870 7 PTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVERTR 81 (290)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCccc
Confidence 5789999999999876665 67788888885432 23322 3566789999999999999999999998655 4
Q ss_pred CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|++||+.+++++.++++.+++++|+..+.++++ ++++.++|+. .||.+.++.+
T Consensus 82 ~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~ 143 (290)
T PRK12870 82 FRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVA-AVPVIFLYPL-AKRVFPVPQL 143 (290)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhh-hhhcccccee
Confidence 899999999999999999999999999999999888777654 4557889996 6777766543
No 24
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=1e-19 Score=165.64 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=106.3
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL 176 (244)
++++|+|++||++.+.....+++|+++|.+.. .++.. +++.+++++++++++|++||++|+|+|++|+| +||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 47899999999999999999999999985322 22211 34556788999999999999999999999965 9999
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI 235 (244)
Q Consensus 177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i 235 (244)
|+|++|++||+.+.+++.++++++++++|+.++.++.+ .+.+. +|.-.+||...++-
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~-~~~l~-~~yp~~KR~t~~~~ 133 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPI-VIFLF-IIDPFLKRYTAWRH 133 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH-HHHHHHHhCccccH
Confidence 99999999999999999999999999999888776654 34434 44445799988773
No 25
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.82 E-value=2.1e-19 Score=162.72 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=103.9
Q ss_pred HHHHHHHHhhchhhHHHH---HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038 98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~---il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp-- 172 (244)
+++++|++++|++++... .+++++|.++|.+..+ ++.. +++++++.+++++++|++|||+|+|+|+.|+|
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 468999999987665444 4567788888754322 2221 35566788999999999999999999997664
Q ss_pred CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|+++|+.+++++.++++++++.+|+..+.++++ +.++.++|+. .||.+.++.+
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~ 139 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVA-ALALAWIYPF-MKRYTHLPQV 139 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHh-HHhcCcccHH
Confidence 899999999999999999999999999999999887776654 4555889984 6777766644
No 26
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.81 E-value=5e-19 Score=162.23 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC
Q 026038 95 VVKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAF---LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171 (244)
Q Consensus 95 ~~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~---l~~lllall~~~l~~~a~~~iND~~D~diDrink 171 (244)
.+.+++|.|++++||+++...+++++.|++.+. .+++.. +..++.+++++.++++++|.+|||+|+|+|+.|+
T Consensus 11 ~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~ 86 (306)
T TIGR02056 11 GETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE 86 (306)
T ss_pred cchhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC
Confidence 445778999999999999999999999988642 222211 1123445578899999999999999999999999
Q ss_pred CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc-------HHHHHHHHHHHHHHhhhcCC---cCCCcch-hhHH
Q 026038 172 PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-------SPAVLCAVIAWGLTGAAYSV---PVSGLIL-YNII 236 (244)
Q Consensus 172 p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~-------~~~~ll~ll~~~~l~~~YS~---~LK~l~l-~~iv 236 (244)
|+||+++|++|+++++.+++++.++++++++++. ++.+.+++ .+++.+++||. ++|+.++ .+++
T Consensus 87 ~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~-~~~~~~~~Yt~gP~~lk~~g~~G~i~ 161 (306)
T TIGR02056 87 PYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLAL-FGSFIAFIYSAPPLKLKQNGWLGNFA 161 (306)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHcCChhhhhhcccHHHHH
Confidence 9999999999999999999999999998887763 34444444 45667999995 7888874 3553
No 27
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.81 E-value=7.3e-19 Score=159.42 Aligned_cols=133 Identities=25% Similarity=0.267 Sum_probs=106.4
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL 176 (244)
.++.++++.||..+.....+.++|..++....+. +..+++++++++++++++|++||++|+|+||+|+| +||+
T Consensus 12 ~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl 86 (289)
T COG0382 12 ALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL 86 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence 3455555666666666666677777776522221 22356778899999999999999999999999999 9999
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHh
Q 026038 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINL 238 (244)
Q Consensus 177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~ 238 (244)
|+|++|+++|+.+.+++.++++++++.+|++++.+. +.++++.++| ..+||....+.+-+
T Consensus 87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~-~~~~~l~~~Y-~~~Kr~~~~~~~~l 146 (289)
T COG0382 87 PSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS-LAALVLALAY-PFLKRFTFLPQLVL 146 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHH-HHhhcCCchHHHHH
Confidence 999999999999999999999999999998876665 4567789999 67899988876543
No 28
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.80 E-value=9e-19 Score=162.41 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038 96 VKRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSL-SQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (244)
Q Consensus 96 ~~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~-~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R 174 (244)
..+++|+|++++||++++ ..+++++|.++|.+.. +.+....+ .+..+++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 346799999999999998 6666677777875321 22221111 12233344556678899999999999999999999
Q ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHHcH-------HHHHHHHHHHHHHhhhcCC---cCCCcch
Q 026038 175 PLASGELSMGTGIAICAGSALLSLALAFLSGS-------PAVLCAVIAWGLTGAAYSV---PVSGLIL 232 (244)
Q Consensus 175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~-------~~~ll~ll~~~~l~~~YS~---~LK~l~l 232 (244)
|+++|++|+++++.+.+++.+++++++++++. +.+++..+.+++++++||. ++||..+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~ 153 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNIL 153 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccch
Confidence 99999999999999999999999988887653 2233333456778999998 3677554
No 29
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.80 E-value=1.1e-18 Score=158.96 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=104.3
Q ss_pred HHHHHHHHhhchhhHHHHHHH---HHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038 98 RKLNAISHVTRYYAQINIIVS---VTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~---~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp-- 172 (244)
+++++|+|++|.+...++.+. ..+|.+++....+..++.. +++.+++++++++++|++||++|+|+|++|+|
T Consensus 4 ~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~ 80 (289)
T PLN02809 4 PSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVERTK 80 (289)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCC
Confidence 468999999999887666443 4455555531111122321 35667899999999999999999999998753
Q ss_pred CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|++||+.+..++.++++++++.+|+..+.++++ +++++++|+. +||.+.++.+
T Consensus 81 ~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~ 142 (289)
T PLN02809 81 LRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGAS-SLLLVFTYPL-MKRFTFWPQA 142 (289)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhH-HHhcCcchHH
Confidence 999999999999999999999999999999999887776654 4666889996 7888876654
No 30
>PLN02776 prenyltransferase
Probab=99.79 E-value=7.8e-19 Score=163.17 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=104.8
Q ss_pred hhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcccCCCcCH
Q 026038 106 VTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSM 183 (244)
Q Consensus 106 LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPLpsG~IS~ 183 (244)
++||+.....+++++.|+++|.+... ++. .+++++++++++.+++|++||++|+|+|++|+| +||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 57999999999999999999854322 332 235667899999999999999999999998775 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 184 GTGIAICAGSALLSLAL-AFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 184 ~~Al~~~i~l~~lgl~l-a~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
++|+.+++++.++|+.+ ++++|+.++.++.+..+++.+.|+. +||...+|++
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-lKR~t~~~~~ 128 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-LKQIHPANTW 128 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-HccCCchhHH
Confidence 99999999999999954 6678988877776656667889995 9999999964
No 31
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=1.7e-18 Score=158.54 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=109.7
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcc---c-CC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQ---S-LS---QVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~---~-~~---~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin 170 (244)
++++.|.++.|.++.+....-++.|+.+|.. . .+ ..++. .+++..++++++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~ 78 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIK---TISLGGSAFFCARTVGIIVNQIIDCAIDKKN 78 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 3589999999999888887777888988841 1 11 11232 2456678999999999999999999999999
Q ss_pred CC--CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 171 KP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 171 kp--~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+| +||+|+|++|++||+.+++++.++++++++++|+.++.++.+. +++.++|+. +||.+.++.+
T Consensus 79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~-~~~~~iY~~-~KR~t~~~~~ 144 (300)
T PRK12876 79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLS-TLLMIIYPY-TKRVTFLCHW 144 (300)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHh-HhcCCchhHH
Confidence 96 9999999999999999999888888888899999888877654 555689997 8999988754
No 32
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=1.3e-18 Score=158.08 Aligned_cols=131 Identities=18% Similarity=0.043 Sum_probs=103.3
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcc-cCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCcc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQ-SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPL 176 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~-~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RPL 176 (244)
+++|+|++||++.+.....++.+++.+.. ..+.+++.. +++.+++++++++++|++|||+|+|+|++|+| +||+
T Consensus 2 ~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL 78 (284)
T PRK12888 2 VRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGREL 78 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCC
Confidence 68999999999999887776666666531 111233322 35667899999999999999999999999984 8999
Q ss_pred cCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI 235 (244)
Q Consensus 177 psG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i 235 (244)
|+|++|++||+.+++++.++++++++.+|+.++.++.+ ++++.++|+. .||.+.++.
T Consensus 79 ~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~t~~~~ 135 (284)
T PRK12888 79 VTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPL-AVAPLVVYPY-AKRFTNFPH 135 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH-hhcccchhh
Confidence 99999999999999999888888888889887766654 3445778874 577776553
No 33
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.78 E-value=3e-18 Score=155.26 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=100.6
Q ss_pred HHHHHhhch---hhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038 101 NAISHVTRY---YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (244)
Q Consensus 101 k~~l~LtRP---~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP 175 (244)
++|.+++|+ ..+....++.++|.++|....+..++.. +++.+++++++++++|++|||+|+|+|+.|+| +||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 345555555 5555556777888888843111112321 35566788999999999999999999997654 899
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+|+|++|++||+.++.++.++|+++++.+|+..+.++++ ++++.++|+. +||...++.+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~-~~~~~~~Y~~-~Kr~~~~~~~ 137 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVA-SLALVATYPF-MKRITYWPQL 137 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHhch-hcccccccHH
Confidence 999999999999999999999999999999887777654 4666999995 7888877754
No 34
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.76 E-value=1.1e-17 Score=152.67 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=108.9
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCC---CC
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINK---PY 173 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrink---p~ 173 (244)
++|.|++.+||+++..++++++.|.+++.....++++.. .++++++++++++++|.+|||+|++ .|+.++ ++
T Consensus 3 ~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~ 79 (296)
T PRK05951 3 NAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQ 79 (296)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCC
Confidence 589999999999999999999999999865434566643 3677789999999999999999955 555432 67
Q ss_pred CcccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhhhcc
Q 026038 174 LPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLIKHN 242 (244)
Q Consensus 174 RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~~~~ 242 (244)
||+++|++|++|++.++.++.++++.++..+ +++.+.++ +.+++.++.||. ++|+.++.++.-.+-+|
T Consensus 80 r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g 154 (296)
T PRK05951 80 HPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWS 154 (296)
T ss_pred CccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcCCCcccCCCCchHHHHHHHHH
Confidence 9999999999999999999888877654443 54444444 456778999976 37777777766554443
No 35
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.76 E-value=6e-18 Score=154.61 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=103.8
Q ss_pred HHHHHHHHhhchhhHHHH---HHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--
Q 026038 98 RKLNAISHVTRYYAQINI---IVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP-- 172 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~---il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp-- 172 (244)
+++++|++++||+.+.++ .++.++|.+++.+.. .++. .++++++++.++.+++|++||++|+|+|+.|+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 358899999888777666 455567777764321 2222 245777899999999999999999999998875
Q ss_pred CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 YLPLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
+||+|+|++|++||+.++.++.++++++.+.+ |+.++.++++ ++++.++|+. +||...++.+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~-~~~~~~~Y~~-~KR~t~~~~~ 145 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFL-ALPPILIYPS-AKRWFAYPQA 145 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHH-HHhccccchH
Confidence 99999999999999999999999999887765 5566666654 4556889996 7998888754
No 36
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.76 E-value=2e-17 Score=150.93 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCC
Q 026038 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTP--AFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL 174 (244)
Q Consensus 97 ~~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~--~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~R 174 (244)
...++.+++++||.+|+.+..++++|++.+.+ .+++ .. ++++++..+.++.+.|++|||+|+|+|++|+|+|
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~ 82 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKG 82 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCC
Confidence 35678899999999999999999999988743 2343 22 2455677889999999999999999999999999
Q ss_pred cccCCCcCHHHHHHHHHHHHHH----HHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHHHhhhc
Q 026038 175 PLASGELSMGTGIAICAGSALL----SLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKH 241 (244)
Q Consensus 175 PLpsG~IS~~~Al~~~i~l~~l----gl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv~~~~~ 241 (244)
|+++|++|+++++.+..++.++ ++++++.++++.+.+.. .+++++++||.+=+|++-....|-++|
T Consensus 83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS~pPlRlK~rp~l~~l~~ 152 (292)
T PRK13595 83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYSLPPLRFKARPFLDGLSN 152 (292)
T ss_pred CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHccCccchhcCcchhHHHH
Confidence 9999999999999976665555 45567777877655544 556789999964333333333333333
No 37
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.74 E-value=4.4e-17 Score=147.69 Aligned_cols=134 Identities=16% Similarity=0.058 Sum_probs=103.9
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--ccccc--CCCCC
Q 026038 99 KLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV--EIDKI--NKPYL 174 (244)
Q Consensus 99 ~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~--diDri--nkp~R 174 (244)
.+++|++++||+++..+++++++|.+++... ..+++.. .++++++++++++++|.+|||+|+ ++|+. ++|+|
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r 77 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLR 77 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcc
Confidence 3689999999999999999999999998532 3455432 356778999999999999999999 57854 55799
Q ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCc---CCCcchhhHHH
Q 026038 175 PLASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVP---VSGLILYNIIN 237 (244)
Q Consensus 175 PLpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~---LK~l~l~~iv~ 237 (244)
|+++|++|+++++.++.++.+++++++..+ +++.+.++ +.+++.+++||.+ +|+.++.+++-
T Consensus 78 ~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~Ys~~p~~~~~~glge~~~ 146 (293)
T PRK06080 78 AIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLG-LLCIAAAILYTGGPKPYGYTGLGELFV 146 (293)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHhhhhcCCCCccCCCCcHHHHH
Confidence 999999999999999999988877666554 54444444 3456678999985 34555666554
No 38
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.70 E-value=2.2e-16 Score=144.54 Aligned_cols=126 Identities=21% Similarity=0.157 Sum_probs=91.0
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC-------
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN------- 170 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin------- 170 (244)
+++++|++++||++......++++|.++|....+.+++.. ++++++++.++..++|++|||+|+|+|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 3589999999999888887777788888731112334432 222334455555777999999999999875
Q ss_pred --C--CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHH---HHHHHHHHHHHHhhhcCCc
Q 026038 171 --K--PYLPLASGELSMGTGIAICAGSALLSLALAFLSGSP---AVLCAVIAWGLTGAAYSVP 226 (244)
Q Consensus 171 --k--p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~---~~ll~ll~~~~l~~~YS~~ 226 (244)
| ++||+++|++|+++++.+++++.++|+++++.++.. ..++..+.+.++++.|+.+
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~~ 142 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVK 142 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 389999999999999999999999999887776532 1222223455667888873
No 39
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.70 E-value=1.9e-16 Score=146.01 Aligned_cols=133 Identities=12% Similarity=0.066 Sum_probs=108.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCC----CCCc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK----PYLP 175 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrink----p~RP 175 (244)
+|.|++++||++...++++++.|.++|......+++.. .++++++++++++++|.+|||+|++.|+-++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 68899999999999999999999999864334566643 3566788899999999999999998654443 5799
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHH----HHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALA----FLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNII 236 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la----~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv 236 (244)
+++|.+|+++++..+.++++++++++ +..|++.+.++ +.+++.+++||. ++|+.++.++.
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt~gP~~l~y~gLGe~~ 146 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIG-LICFAIGILYTGGPLPLSRMPLGEIF 146 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-HHHHHHhhhhcCCCcccccCccHHHH
Confidence 99999999999999999999988744 44565554444 456778999998 79999999886
No 40
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.63 E-value=3.1e-15 Score=136.58 Aligned_cols=96 Identities=20% Similarity=0.102 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHH
Q 026038 140 GVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLT 219 (244)
Q Consensus 140 ~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l 219 (244)
..+++.+.+++..+++|++|||+|+|+|++|+|+||+|||++|+++|+.+++.+.++++.++... .... ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence 34666777889999999999999999999999999999999999999999999977777766555 1111 12223
Q ss_pred hhhc-----CCcCCCcchhh--HHHhhhc
Q 026038 220 GAAY-----SVPVSGLILYN--IINLIKH 241 (244)
Q Consensus 220 ~~~Y-----S~~LK~l~l~~--iv~~~~~ 241 (244)
.++| +..+|+.++.. +|-.++|
T Consensus 121 ~~lY~~lm~a~~~K~~~l~gNl~Va~ltg 149 (299)
T PRK13592 121 LYIYGTLMSFWFFKRDKIQNSLPLALVTH 149 (299)
T ss_pred HHHHHHHHHHHHHcccCCCcchhhhhhcc
Confidence 4455 77788887764 3444444
No 41
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.54 E-value=1.2e-13 Score=125.68 Aligned_cols=128 Identities=15% Similarity=0.017 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccC--CCCCcccCCCcCH
Q 026038 108 RYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKIN--KPYLPLASGELSM 183 (244)
Q Consensus 108 RP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrin--kp~RPLpsG~IS~ 183 (244)
||+++..++++++.|.++|.... .+++.. .++++++++++++++|.+|||+|++ .|+.+ .|+|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999996432 666643 3677789999999999999999996 46543 4689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----cH-----HHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhh
Q 026038 184 GTGIAICAGSALLSLALAFLS----GS-----PAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLI 239 (244)
Q Consensus 184 ~~Al~~~i~l~~lgl~la~~l----~~-----~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~ 239 (244)
++++..++++++++++++.++ ++ +.+++..+.+++.+++||. ++++.++.+++-.+
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i 144 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLV 144 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHH
Confidence 999999999988877665554 32 1333333456778999997 57777777775443
No 42
>PLN02922 prenyltransferase
Probab=99.53 E-value=1.9e-13 Score=126.15 Aligned_cols=135 Identities=16% Similarity=0.044 Sum_probs=101.2
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP 175 (244)
++++.|++.+||++...+++++++|.++|......+++.. .++++++++++++++|.+|||+|++ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 4588999999999999999999999999965434677643 3677899999999999999999987 7885443222
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIIN 237 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~ 237 (244)
-..| |+++++..+++++++++...+.+ +.|.+++..+.+++.+++||. ++++.++.++.-
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v 156 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLC 156 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHH
Confidence 2234 99999999988888877433332 223334334567888999986 588888877654
No 43
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.52 E-value=1.6e-13 Score=126.19 Aligned_cols=136 Identities=11% Similarity=-0.047 Sum_probs=106.1
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP 175 (244)
++++.|++.+||+++..+++++++|.++|......+++.. .++++++++++++++|.+|||+|++ .|+. ++ ..
T Consensus 10 ~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~-~~ 84 (304)
T PRK07419 10 SRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KF-HS 84 (304)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-cc-cC
Confidence 5689999999999999999999999999864334677643 3677889999999999999999998 7884 22 23
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHHhh
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIINLI 239 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~~~ 239 (244)
.+++..+++++...+.++++++++++.++ +++.+.++ +.+++.+++||. ++|+.++.+++-.+
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~gP~~l~y~gLGE~~v~l 154 (304)
T PRK07419 85 VVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQGPPFRLGYQGLGEPLCFL 154 (304)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccCCCcccCCCCchHHHHHH
Confidence 45666689999999999988887765543 54444444 457888999986 58888888886544
No 44
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.50 E-value=9.2e-14 Score=121.52 Aligned_cols=121 Identities=26% Similarity=0.269 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--CCCCCcccCCCcCHHHHHHHHH
Q 026038 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTGIAICA 191 (244)
Q Consensus 114 ~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDri--nkp~RPLpsG~IS~~~Al~~~i 191 (244)
..+.++++|.+++... ..++.. ...+++++++++.++|.+||++|+|+|+. |+|+||+++|+++++++..++.
T Consensus 3 ~~~~~~l~~~~~~~~~--~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~ 77 (257)
T PF01040_consen 3 LSFLPVLAGLALASGG--PFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL 77 (257)
T ss_pred HHHHHHHHHHHHHHcC--CCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence 3455666665444322 223322 24555677799999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC--cCCCcch-hhHHHhhh
Q 026038 192 GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV--PVSGLIL-YNIINLIK 240 (244)
Q Consensus 192 ~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~--~LK~l~l-~~iv~~~~ 240 (244)
++.++++++++..+++.+.+.++ +.+.+++||. ++|+.++ .+++.-+-
T Consensus 78 ~~~~l~l~l~~~~~~~~~~~~~~-~~~~~~~Ys~~~~lk~~~~~~~~~~~~~ 128 (257)
T PF01040_consen 78 ILLLLGLLLALLLGPWFLLILLL-GFLLGLLYSPPLRLKRRPLWGELVVALV 128 (257)
T ss_pred HHHHHHHHHHHhcCchhHHHHHH-HHHHHHHHhhhhhhcceeccchhhHHHh
Confidence 99999999998888777666544 4556799995 6888888 66555443
No 45
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.49 E-value=7.6e-13 Score=120.47 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=81.1
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCc-
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQ-VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLP- 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~-~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RP- 175 (244)
++++.++++.||++|..++.++++|.++|.+..+. +++.++ .+++. ..+..+...|++|||+|+|+|+.|++++.
T Consensus 6 ~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~--~ll~~-~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~ 82 (282)
T PRK12875 6 DRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAV--ALFAY-FLFPANVFLYGVNDVFDADTDELNPKKDRE 82 (282)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHH--HHHHH-HHHHHHHHHhcchhhhhhhccccCCCccCC
Confidence 57899999999999999999999999999653322 344221 11111 11334556678999999999999987543
Q ss_pred --ccCCCcCHHHHHHHH-HHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcC---CcCCCcchhhHH
Q 026038 176 --LASGELSMGTGIAIC-AGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS---VPVSGLILYNII 236 (244)
Q Consensus 176 --LpsG~IS~~~Al~~~-i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS---~~LK~l~l~~iv 236 (244)
++ .+.+.+.... ....++++.+.+..++.... .+++.++++++|| .++|+..+.|++
T Consensus 83 r~~~---~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~-~ll~~i~~~~~YS~pP~rlk~~p~~~~~ 145 (282)
T PRK12875 83 REVR---YRGDRRVLVAVALSGALALAFLLVLPPAAWP-ALLAFLVLSVEYSAPPLRFKTTPVLDSL 145 (282)
T ss_pred CCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHcCCCccchhccHHHHH
Confidence 33 1112222221 11233344444444443322 3345678899999 456777776653
No 46
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.48 E-value=6.4e-15 Score=134.99 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=110.7
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC--CCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp--~RP 175 (244)
..++.|+|++||+.....+++...|+++|.+. +++.- ++...+|+.+..+++|++||+++...|..|+| .||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 45689999999998888888888999999764 33322 35667899999999999999999999999887 899
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHHH-HcHHHHHHHHHHHHHHhhhcCCcCCCcchhhH
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAFL-SGSPAVLCAVIAWGLTGAAYSVPVSGLILYNI 235 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~~-l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~i 235 (244)
+|+|+|||.+|+.|+.+....|+.+.++ .|+....++..-.+++.++|+ |+||+.+.|.
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT-PlKrihiinT 225 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT-PLKRIHIINT 225 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc-chhhhhhhhh
Confidence 9999999999999999999999866544 888887887777788888998 7899887763
No 47
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.45 E-value=1.7e-12 Score=118.28 Aligned_cols=130 Identities=15% Similarity=0.089 Sum_probs=86.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCC
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASG 179 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG 179 (244)
++.+++++||++|+.+.++...|+++|.+ .+ ++.+ ++.++......+.+.|++|||+|+|.|+.|++++.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 36789999999999999999889999932 22 2322 122222344444455677999999999999874332 58
Q ss_pred CcCHHHHHHHHHHHHHH-----HHHHHHHHcHHHHHHHHHHHHHHhhhcCC---cCCCcchhhHHH
Q 026038 180 ELSMGTGIAICAGSALL-----SLALAFLSGSPAVLCAVIAWGLTGAAYSV---PVSGLILYNIIN 237 (244)
Q Consensus 180 ~IS~~~Al~~~i~l~~l-----gl~la~~l~~~~~ll~ll~~~~l~~~YS~---~LK~l~l~~iv~ 237 (244)
.++++|+......+.++ ++.+.+..+++.+.++ ..+++.++.||. ++|+.++.|+..
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~~p~rlk~~gl~d~~t 138 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSAPGLRFKERPFLDSLT 138 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcCCCccccccchHHHHH
Confidence 89999984443333333 2223333354444443 456788999998 588888888843
No 48
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.44 E-value=6.8e-14 Score=125.81 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=103.3
Q ss_pred HHHHHHHHHhhchhhHHHHHH---HHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCC-
Q 026038 97 KRKLNAISHVTRYYAQINIIV---SVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP- 172 (244)
Q Consensus 97 ~~~lk~~l~LtRP~~~~~~il---~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp- 172 (244)
..+++.|.+++|.+..+++.+ +..+..+++... ...+. +.-+.++=+++++|++++|+|||++|+|+|+..+|
T Consensus 61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRt 137 (353)
T KOG1381|consen 61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERT 137 (353)
T ss_pred CccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhh
Confidence 356999999999988887743 334556666432 11121 11123334689999999999999999999997765
Q ss_pred -CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCCcCCCcchhhHH
Q 026038 173 -YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236 (244)
Q Consensus 173 -~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~~LK~l~l~~iv 236 (244)
.||+++|++|+++|+.+..+.+.+|+.+...+|+....++ ..++.+++.|.. +||..-+..+
T Consensus 138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg-~~sl~~v~~ypl-~kr~TY~pq~ 200 (353)
T KOG1381|consen 138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALG-ASSLALVITYPL-MKRFTYWPQL 200 (353)
T ss_pred cccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhc-ccccccEEEeeh-hhhcchhHHH
Confidence 7999999999999999999999999999888997775554 456777888987 5887776654
No 49
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.43 E-value=2.2e-12 Score=118.04 Aligned_cols=135 Identities=16% Similarity=0.009 Sum_probs=102.2
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccc----cCC
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDK----INK 171 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDr----ink 171 (244)
.+.+.||+++||||+..+++++++|.++|......+++. ..+++++++.+++.+.|..|||+|++ .|. ..+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 346899999999999999999999999996543345553 35788899999999999999999987 675 223
Q ss_pred CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHH----HcHHHHHHHHHHHHHHhhhcCCcCCCc---chhhHH
Q 026038 172 PYLPLASGELSMGTGIAICAGSALLSLALAFL----SGSPAVLCAVIAWGLTGAAYSVPVSGL---ILYNII 236 (244)
Q Consensus 172 p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~----l~~~~~ll~ll~~~~l~~~YS~~LK~l---~l~~iv 236 (244)
-++-+...+++++.++.+.+.+...+.+++.. .+++.+.++ +.+++.++.|+++=||+ ++.+|.
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTgGp~PlgY~gLGEi~ 153 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTGGPFPLGYMGLGEIF 153 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeeccCCcCcccCCHHHHH
Confidence 36778888899999988888887776665443 354433443 56688899999864554 455544
No 50
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.43 E-value=3.5e-12 Score=116.23 Aligned_cols=131 Identities=13% Similarity=-0.032 Sum_probs=97.7
Q ss_pred HHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCcccCCC
Q 026038 103 ISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLPLASGE 180 (244)
Q Consensus 103 ~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RPLpsG~ 180 (244)
|++.+||+++..++++++.|.++|....+.+++.. .++++++++++|+++|.+|||+|++ .|+.+. ....++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCccccc
Confidence 67899999999999999999999965444677643 3567789999999999999999987 588432 1233344
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH----cHHHHHHHHHHHHHHhhhcCCc---CCCcchhhHHHhh
Q 026038 181 LSMGTGIAICAGSALLSLALAFLS----GSPAVLCAVIAWGLTGAAYSVP---VSGLILYNIINLI 239 (244)
Q Consensus 181 IS~~~Al~~~i~l~~lgl~la~~l----~~~~~ll~ll~~~~l~~~YS~~---LK~l~l~~iv~~~ 239 (244)
.+++++...+.++.+++++++.++ + |.++...+.+++.+++||.+ +|+.++.++.-.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l 141 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWL 141 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHH
Confidence 568999888888888877655443 4 33333344578889999964 8888888876544
No 51
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.33 E-value=8.4e-12 Score=112.47 Aligned_cols=119 Identities=21% Similarity=0.195 Sum_probs=79.5
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCCCCCccc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrinkp~RPLp 177 (244)
+.+++++++.|+.+......++..+..... .. +... ....+++++++++++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL-LL-GLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH-HH-cChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 457899999999988777665544332110 01 1111 1345678899999999999999999999999999998
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH-----HcHHHHHHHHHHHHHHhhhcCCcCC
Q 026038 178 SGELSMGTGIAICAGSALLSLALAFL-----SGSPAVLCAVIAWGLTGAAYSVPVS 228 (244)
Q Consensus 178 sG~IS~~~Al~~~i~l~~lgl~la~~-----l~~~~~ll~ll~~~~l~~~YS~~LK 228 (244)
++ +++.....++..+++.++.+ .+++.+.++++ +.+++++||.+.|
T Consensus 75 s~----~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~Ys~~~~ 125 (285)
T PRK12872 75 SE----TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFII-PLILGILYSVFFK 125 (285)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHhChhH
Confidence 44 55555444444444443333 36666555544 5666999999543
No 52
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.21 E-value=2.8e-10 Score=104.72 Aligned_cols=74 Identities=24% Similarity=0.215 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHhhhcCC
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ll~~~~l~~~YS~ 225 (244)
+++.+...++|++|||+|+|+|++|+|+||.+ +.+.++.+.++.+++|+++++..|++ ++++ ++++.+++||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~--ll~l-l~~l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGML--LLAF-LPFITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHH--HHHH-HHHHHHHHhcC
Confidence 45668899999999999999999999999987 89999999999999999999998854 2343 45667999997
Q ss_pred c
Q 026038 226 P 226 (244)
Q Consensus 226 ~ 226 (244)
.
T Consensus 138 G 138 (307)
T PRK13591 138 G 138 (307)
T ss_pred C
Confidence 3
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.92 E-value=3.1e-06 Score=75.41 Aligned_cols=144 Identities=13% Similarity=-0.026 Sum_probs=107.4
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccc--ccccCCCCCc
Q 026038 98 RKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVE--IDKINKPYLP 175 (244)
Q Consensus 98 ~~lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~d--iDrinkp~RP 175 (244)
++.+.|+-..||+.......++..|.++|+.+....++.+.. .++..++.+..+.++|..|-|+|.- +|+...-+|.
T Consensus 59 ~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~-~fl~a~avlavh~agnlvntyfdf~kgid~kkaddrt 137 (359)
T KOG4581|consen 59 MKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLAT-FFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRT 137 (359)
T ss_pred HHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHH-HHHHHhhheeeecccchhhhhhhhhhccccccccchh
Confidence 578999999999999999999999999997543322333222 2345567788899999999999974 8988777999
Q ss_pred ccCCCcCHHHHHHHHHHHHHHHHHHHH---HHcHH---HHHHHHHHHHHHhhhcCCc--CCCcchhhHHHhhhcc
Q 026038 176 LASGELSMGTGIAICAGSALLSLALAF---LSGSP---AVLCAVIAWGLTGAAYSVP--VSGLILYNIINLIKHN 242 (244)
Q Consensus 176 LpsG~IS~~~Al~~~i~l~~lgl~la~---~l~~~---~~ll~ll~~~~l~~~YS~~--LK~l~l~~iv~~~~~~ 242 (244)
++.-.+.+.++..++..+..+|...+. .+++. -+.+..++++.-.++|+.. +|...+.|.|-+|-.|
T Consensus 138 lvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytggigfkyialgdliili~fg 212 (359)
T KOG4581|consen 138 LVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGGIGFKYIALGDLIILILFG 212 (359)
T ss_pred HHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecccceEEEeccCEEEEEeec
Confidence 999999999999999999888776533 33332 2233344556667788864 7888888877666443
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=95.89 E-value=0.29 Score=45.56 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=40.3
Q ss_pred HhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc-----HHHHHHHHHHHHHHhhhcCCc
Q 026038 157 SLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLALAFLSG-----SPAVLCAVIAWGLTGAAYSVP 226 (244)
Q Consensus 157 ~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~-----~~~~ll~ll~~~~l~~~YS~~ 226 (244)
.+||+-|.|.|+.+. +.-|+.=|+=.-+.......++..+.++++..++ |...+..++.+++....|+.+
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~ 272 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP 272 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence 689999999999875 4788866643333222222222222222333333 233444556677778889875
No 55
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=93.86 E-value=0.8 Score=42.37 Aligned_cols=46 Identities=13% Similarity=-0.051 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHH
Q 026038 148 QIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL 196 (244)
Q Consensus 148 ~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~l 196 (244)
..+........||+-|+|.|+.+.+ .-|+-=| .+.+..+...+.++
T Consensus 183 ~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~ 229 (304)
T PRK07419 183 LGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG---TKRGAQLLPWIVGL 229 (304)
T ss_pred HHHHHHHHHHHcCCcchhhHHHcCCcceeeeec---hHhHHHHHHHHHHH
Confidence 3355677778899999999998754 6776545 44444444444333
No 56
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.76 E-value=0.81 Score=42.52 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHH
Q 026038 143 KAVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALL 196 (244)
Q Consensus 143 lall~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~l 196 (244)
+.-+.+.+..+..+..|++.|.|.|+.|.+ .-|+-=| .+.++.+..+++..
T Consensus 180 l~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG---~~~~~~l~~~l~~~ 231 (303)
T COG1575 180 LPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLG---RKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeec---cHhHHHHHHHHHHH
Confidence 334566677778888899999999999987 4554334 34444444443333
No 57
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=93.45 E-value=1.1 Score=40.69 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcC
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELS 182 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS 182 (244)
.++.++-+.+-..+|++.|+|.|+.. .|.-|+.-|+=+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 204 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence 34566667777889999999999965 578888888543
No 58
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=93.41 E-value=1.4 Score=39.65 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALL 196 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~l 196 (244)
+..++.......+||+-|+|.|+.+. +.-|..-|+ +.+..+..++.++
T Consensus 168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~ 216 (285)
T PRK12872 168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLL 216 (285)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHH
Confidence 34445566677889999999999754 578887776 4444444443333
No 59
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=93.12 E-value=0.64 Score=42.05 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
+..++.+..-..+||.-|+|.|+.. .+.-|+.-|+
T Consensus 165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 3455666667789999999999854 5688888883
No 60
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=92.53 E-value=2 Score=38.93 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL 198 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl 198 (244)
+...+........||+-|+|.|+.+. +.-|+-=| .+.+..+..++..++.
T Consensus 175 l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 175 LPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence 34455667777889999999999764 46666545 4454444444444433
No 61
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.96 E-value=0.96 Score=41.99 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038 144 AVVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL 198 (244)
Q Consensus 144 all~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl 198 (244)
..+...+..+.....||+.|+|.|+.+. +.-|+.=| .+.+..+..++.+++.
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG---~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIG---REKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEc---HHhHHHHHHHHHHHHH
Confidence 3455566777778899999999999775 46776555 4555544444444433
No 62
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=91.73 E-value=2.3 Score=38.49 Aligned_cols=37 Identities=16% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I 181 (244)
.+..++.+..-..+|++.|+|.|+.+. +.-|+.-|+=
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~ 208 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence 345566667777889999999999654 6888877753
No 63
>PLN02922 prenyltransferase
Probab=91.70 E-value=0.94 Score=42.10 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSALLS 197 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~~lg 197 (244)
+...+..+.....||+-|+|.|+.+.+ .-|+.=| .+.+..+...+..++
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~ 244 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLG---TEKGSRVVRWAVLLL 244 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceeeEEC---hHHHHHHHHHHHHHH
Confidence 344456667788899999999998764 6776545 455554444444433
No 64
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=91.02 E-value=3.1 Score=38.03 Aligned_cols=49 Identities=14% Similarity=-0.035 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHH
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSL 198 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl 198 (244)
...+...+....||+-|+|.|+.+. +.-|+-=| .+.+..+...+..++.
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG---~~~a~~l~~~l~~~~y 218 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG---TKLAAKIVPWVISLSY 218 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeheec---HHhHHHHHHHHHHHHH
Confidence 3446677788889999999999775 46676444 5555555555544443
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=90.85 E-value=3.6 Score=39.27 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 147 AQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
...+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 344566677789999999999865 5788887776
No 66
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=89.93 E-value=4.8 Score=36.49 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcC
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELS 182 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS 182 (244)
.+..++-+..-...|.+.|+|.|+... +.-|+.-|+=.
T Consensus 168 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 206 (282)
T PRK12848 168 FLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence 445566666777889999999999654 68888777643
No 67
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=89.93 E-value=5.2 Score=36.55 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
+...+-+.+-..+|++-|+|.|+.. .+.-|+.-|+
T Consensus 166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 4555666677899999999999965 4677877675
No 68
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=89.55 E-value=1.3 Score=40.93 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHH
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSAL 195 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~ 195 (244)
+++.++-..+-.++|++-|+|.|+... +.-|+-=|+-+.+-+..+..+..+
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~ 234 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVV 234 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHH
Confidence 345666667777899999999998654 688887774444433333333333
No 69
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=89.48 E-value=1.4 Score=40.36 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhccccccc-CCCCCcccCCCc
Q 026038 147 AQIFMNISLCSLNQICDVEIDKI-NKPYLPLASGEL 181 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDri-nkp~RPLpsG~I 181 (244)
..++-+.+-..+|++.|+|.|+. ..|.-|+.-|+=
T Consensus 170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 34444555557888899999985 457888887763
No 70
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=89.00 E-value=5.3 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGEL 181 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~I 181 (244)
+..++.+..-...||+.|+|.|+.+ .+.-|+.-|+-
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 4556667778899999999999965 46888887864
No 71
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=88.82 E-value=1.9 Score=38.98 Aligned_cols=34 Identities=26% Similarity=0.231 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 147 AQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
..++.+.+-..+||+-|+|.|+.. .+.-|+.-|+
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 344555566777999999999964 4688887664
No 72
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=88.78 E-value=2.5 Score=39.06 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
.+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus 199 ~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 199 SLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 3445566889999999999865 5688887775
No 73
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=88.58 E-value=8.4 Score=35.26 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~ 205 (244)
++..+...+...+||+-|+|.|+.. ++.-|.. +-.+.+..+..++.+++..+-+..+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~---lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATV---LGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchhh---ccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777899999999999965 4566664 4456666666666555554433333
No 74
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=88.39 E-value=5.8 Score=36.28 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHH
Q 026038 148 QIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLS 197 (244)
Q Consensus 148 ~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lg 197 (244)
..+........||+-|+|.|+.+. +.-|+-=| .+.+..+...+...+
T Consensus 173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG---~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 173 TGLLACAVLNINNLRDIPTDARAGKNTLAVRLG---DARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHHHHHcCcccchhHHHcCCEeehhhcc---hHhHHHHHHHHHHHH
Confidence 345556777789999999999765 46665444 555555554444444
No 75
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=88.22 E-value=3.1 Score=38.13 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~ 205 (244)
++..+...+...+||+-|+|.||.+. +.-|. ++-.+.+..+..++.+++.++...++
T Consensus 167 ~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 167 AAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577788999999999999764 46665 56678888888887777776554444
No 76
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.03 E-value=6.4 Score=35.96 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHH
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMG 184 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~ 184 (244)
.+..++-..+-..+|++-|+|.|+... +.-|+.-|+=+..
T Consensus 172 ~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~ 212 (290)
T PRK12870 172 WAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence 346677777888899999999999654 5777766655443
No 77
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=87.24 E-value=3.1 Score=38.95 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSM 183 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~ 183 (244)
+...+...+...+||+-|+|.|+.. ++.-|+.=|+=..
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a 225 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT 225 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence 3455667777789999999999965 4578876665433
No 78
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.92 E-value=4 Score=36.57 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCC
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~ 180 (244)
..++...+-..+||+-|+|.|+.+. +.-|+.-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 4455556678899999999998764 577876665
No 79
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=86.61 E-value=5 Score=37.08 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I 181 (244)
+..++...+...+||+.|+|.|+.+. +.-|+-=|+=
T Consensus 189 ~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~ 225 (308)
T PRK12887 189 LFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQ 225 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHH
Confidence 35556667778899999999999764 5677655543
No 80
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.46 E-value=11 Score=35.03 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
++.++-+..-..++++.|+|.|+.. .|.-|+.-|+
T Consensus 199 ~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 199 AGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 3455556666677899999999864 5788887776
No 81
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=86.16 E-value=4 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 150 FMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 150 l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
+...+...+||+-|+|.|+.+ ++.-|+.-|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 445556789999999999976 4578876666
No 82
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=86.03 E-value=6.9 Score=35.16 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHH
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSA 194 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~ 194 (244)
..++...+-..+||+-|+|.|+.+. |.-|+.-|+ +.+..+...+.
T Consensus 165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~---~~t~~~~~~~~ 210 (276)
T PRK12882 165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV---RKALYVAAAFL 210 (276)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH---HHHHHHHHHHH
Confidence 3345556677899999999999764 677876665 44444443333
No 83
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=85.92 E-value=4.3 Score=37.34 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhhcccccccC-CCCCcccCCCcCHHHHHHHHHHH
Q 026038 149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGELSMGTGIAICAGS 193 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~IS~~~Al~~~i~l 193 (244)
.+...+....||+-|+|.|+.+ ++.-|+.-|+ +.+..+..++
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~---~~a~~~~~~l 235 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI---ETAAWICVGA 235 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcCh---HHHHHHHHHH
Confidence 4466667789999999999966 4577776664 4444444433
No 84
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=85.50 E-value=11 Score=34.51 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
+..++-+.+-..+|++-|+|.|+.. .|.-|+.-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 4556666777789999999999854 5788887776
No 85
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=85.39 E-value=16 Score=33.52 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINK-PYLPLASGEL 181 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~I 181 (244)
++.++-..+-.++.++-|+|.|+... +.-|+-=|+=
T Consensus 166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~ 202 (286)
T PRK12895 166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIK 202 (286)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCc
Confidence 45555556667999999999999765 4666655543
No 86
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=82.82 E-value=12 Score=33.92 Aligned_cols=49 Identities=20% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccCCC-CCcccCCCcCHHHHHHHHHHHH
Q 026038 143 KAVVAQIFMNISLCSLNQICDVEIDKINKP-YLPLASGELSMGTGIAICAGSA 194 (244)
Q Consensus 143 lall~~~l~~~a~~~iND~~D~diDrinkp-~RPLpsG~IS~~~Al~~~i~l~ 194 (244)
+.+++..+...+-.+++|+-|+|-|+.+.- .-|..-|+ +.+..++....
T Consensus 171 ~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~---~~a~~l~~~~~ 220 (289)
T COG0382 171 LLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI---KKALALALLLL 220 (289)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCc---hhHHHHHHHHH
Confidence 334566777777789999999999998763 45554443 34444433333
No 87
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=81.62 E-value=7 Score=35.15 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 149 IFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
++...+-...||+-|+|.|+.. .+.-|+.-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3444556677999999999965 4688887775
No 88
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=81.46 E-value=11 Score=32.48 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcc
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPL 176 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPL 176 (244)
...+........||+-|+|.|+... +.-|.
T Consensus 154 ~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v 184 (257)
T PF01040_consen 154 FFFLLIFAIMFFNDIRDIEGDRKAGRRTLPV 184 (257)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcCCcchHH
Confidence 3356666677788999999997544 45443
No 89
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=81.23 E-value=18 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHH
Q 026038 149 IFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTG 186 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~A 186 (244)
.+........|++-|+|.|+.+. +.-|+ ++..+.+
T Consensus 181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 34456677889999999999765 45565 4445555
No 90
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=80.93 E-value=24 Score=32.64 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCC
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGE 180 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~ 180 (244)
+.++-+.+=..+=.+.|+|.|+... +.-|+.-|+
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 4444444444566667999999765 678888886
No 91
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=80.10 E-value=38 Score=31.41 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=21.5
Q ss_pred HHHHHHhhhhhcccccccCC-CCCcccCCCcC
Q 026038 152 NISLCSLNQICDVEIDKINK-PYLPLASGELS 182 (244)
Q Consensus 152 ~~a~~~iND~~D~diDrink-p~RPLpsG~IS 182 (244)
.++-.++.+.-|+|.|+... +.-|+.-|+=+
T Consensus 185 ~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~ 216 (300)
T PRK12876 185 IAANDIIYAIQDLEFDRKEGLFSIPARFGEKK 216 (300)
T ss_pred HHHHHHHHHHcCHhhHHHcCCccchHHHCchh
Confidence 33444677789999999765 57777666554
No 92
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=69.37 E-value=87 Score=28.67 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=18.1
Q ss_pred HhhhhhcccccccCC-CCCcccCCCc
Q 026038 157 SLNQICDVEIDKINK-PYLPLASGEL 181 (244)
Q Consensus 157 ~iND~~D~diDrink-p~RPLpsG~I 181 (244)
.+-.+.|+|-|+... +.-|+.-|+=
T Consensus 184 ~~ya~~D~e~D~~~Gi~sl~v~~G~~ 209 (289)
T PLN02809 184 TIYAHQDKEDDLKVGVKSTALRFGDD 209 (289)
T ss_pred HHHHHhchhhHHhCCCcccchhhcHH
Confidence 455556999998765 6788777764
No 93
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=67.52 E-value=77 Score=28.88 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccC-CCCCcccCCC
Q 026038 147 AQIFMNISLCSLNQICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrin-kp~RPLpsG~ 180 (244)
..++-+..-...+.+.|+|-|+.. -+.-|+.-|.
T Consensus 175 ~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 175 IIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 444445544556668888888644 3577776664
No 94
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=66.67 E-value=32 Score=30.96 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.4
Q ss_pred hhhcccccccC-CCCCcccCCC
Q 026038 160 QICDVEIDKIN-KPYLPLASGE 180 (244)
Q Consensus 160 D~~D~diDrin-kp~RPLpsG~ 180 (244)
.+.|+|.|+.. .+.-|+.-|+
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCH
Confidence 45678888754 4577776665
No 95
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=65.71 E-value=27 Score=31.56 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=15.0
Q ss_pred hhhhccccccc-CCCCCcccCCC
Q 026038 159 NQICDVEIDKI-NKPYLPLASGE 180 (244)
Q Consensus 159 ND~~D~diDri-nkp~RPLpsG~ 180 (244)
|++.|+|-|+. +.|.-|+.-|+
T Consensus 179 l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 179 LALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHhHHhHHHcCCeecceeecH
Confidence 67778888864 34677776664
No 96
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=59.25 E-value=96 Score=25.22 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=46.1
Q ss_pred CchhhHHHHHHHHHHHHHhhch------hhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026038 88 AAPSFLEVVKRKLNAISHVTRY------YAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQI 161 (244)
Q Consensus 88 ~~~~~~~~~~~~lk~~l~LtRP------~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~ 161 (244)
+.+.++......++.+....|- |.+. .++...++..+.. +...+ +.+++.+++-...-.+|--
T Consensus 7 g~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~-~~~~i~~~~~l~~---~~~e~-------lll~~si~lvl~vEllNTA 75 (123)
T COG0818 7 GFRRLIKAFGYSLKGLKAAWKEEAAFRQELLA-ALVALVLAFFLGV---SAIEW-------LLLILSIFLVLIVELLNTA 75 (123)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHhCC---cHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655553 3332 2222333343432 11111 2245667777888889999
Q ss_pred hcccccccCCCCCccc
Q 026038 162 CDVEIDKINKPYLPLA 177 (244)
Q Consensus 162 ~D~diDrinkp~RPLp 177 (244)
.+.-.|++.+.+.|+.
T Consensus 76 IEa~VD~~s~e~hela 91 (123)
T COG0818 76 IEAVVDLISPEYHELA 91 (123)
T ss_pred HHHHHHHcccchhHHH
Confidence 9999999887777654
No 97
>PLN02878 homogentisate phytyltransferase
Probab=58.26 E-value=65 Score=29.73 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHH
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSA 194 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~ 194 (244)
...+...+...+||+-|+|-||... +.-|+.-| .+.+..++..+.
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ll 209 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNLL 209 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHHH
Confidence 3445555667899999999999764 57777555 344444444433
No 98
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=58.20 E-value=1.5e+02 Score=27.25 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhcccccccCCCCCcccCCC-cCHHHHHHHHHHHHHHHH
Q 026038 150 FMNISLCSLNQICDVEIDKINKPYLPLASGE-LSMGTGIAICAGSALLSL 198 (244)
Q Consensus 150 l~~~a~~~iND~~D~diDrinkp~RPLpsG~-IS~~~Al~~~i~l~~lgl 198 (244)
..+-.+..++|.-|++ +..-|.-|+.-|+ -+..++..+..++..+++
T Consensus 184 ~~h~~~~ai~~~~Dy~--~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~ 231 (306)
T PRK13362 184 MPHSYAIAIFRFNDYA--AAGIPVLPVARGIAKTKLHIVLYILVFALVTA 231 (306)
T ss_pred HHHHHHHHHHhHhhHH--HCCCeeeceecChHHHHHHHHHHHHHHHHHHH
Confidence 3444455666655554 3344677777775 233333344433333333
No 99
>PLN02776 prenyltransferase
Probab=48.04 E-value=2.5e+02 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=19.4
Q ss_pred CCCCcccC--CCcCHHHHHHHHHHHHHHHHHH
Q 026038 171 KPYLPLAS--GELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 171 kp~RPLps--G~IS~~~Al~~~i~l~~lgl~l 200 (244)
-|--|++. |+-+..+.......+..++++.
T Consensus 184 ~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~ 215 (341)
T PLN02776 184 YRMLSLADATGRRTALVALRNCLYLAPLGFLA 215 (341)
T ss_pred CcccCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 35567766 4566667777777777666654
No 100
>COG4125 Predicted membrane protein [Function unknown]
Probab=45.92 E-value=1.1e+02 Score=25.47 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHhhhhhcccccccCCC---CCcccCCCcCHHHHHHHHHHHHHHHH-HHHHHHc
Q 026038 154 SLCSLNQICDVEIDKINKP---YLPLASGELSMGTGIAICAGSALLSL-ALAFLSG 205 (244)
Q Consensus 154 a~~~iND~~D~diDrinkp---~RPLpsG~IS~~~Al~~~i~l~~lgl-~la~~l~ 205 (244)
-+.++|=.|..-.|+..++ .|.+ ++...+|..+=..+.++.+ ..++++|
T Consensus 52 vAm~WN~vyN~lFd~~~rr~~~~rT~---~vRv~HAv~FE~gliv~lvP~iAw~L~ 104 (149)
T COG4125 52 VAMIWNFVYNLLFDRAERRMGTRRTL---AVRVAHAVGFELGLIVILVPLIAWWLG 104 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHhhHHHHhhHHHHHHHH
Confidence 3444555555555554443 3332 4455666666666665555 3355554
No 101
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=45.10 E-value=1e+02 Score=24.84 Aligned_cols=41 Identities=22% Similarity=0.192 Sum_probs=25.4
Q ss_pred ccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH----HHHHcHHH
Q 026038 166 IDKINKPYLPLASGELSMGTGIAICAGSALLSLAL----AFLSGSPA 208 (244)
Q Consensus 166 iDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l----a~~l~~~~ 208 (244)
-|+.|+ .|.+=+=+|..|.+..+.+..++|+++ ++..++++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~a 52 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWWA 52 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466664 455556678888877777766665544 44455553
No 102
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=42.84 E-value=37 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhhhcccccc
Q 026038 150 FMNISLCSLNQICDVEIDK 168 (244)
Q Consensus 150 l~~~a~~~iND~~D~diDr 168 (244)
+.-.+..++|.++|.++|=
T Consensus 16 Cl~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 16 CLLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 3347888999999999664
No 103
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=40.60 E-value=22 Score=29.90 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=15.8
Q ss_pred HhhhhhcccccccCCC----CCcccCCCc
Q 026038 157 SLNQICDVEIDKINKP----YLPLASGEL 181 (244)
Q Consensus 157 ~iND~~D~diDrinkp----~RPLpsG~I 181 (244)
.+-++.-.|+|++|++ +||=.+-..
T Consensus 3 ~Ik~IL~~~id~iN~~E~RDnkprFs~~F 31 (155)
T PF10777_consen 3 EIKRILIEEIDRINREEKRDNKPRFSSSF 31 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccHHH
Confidence 3556667789998863 577444333
No 104
>PRK09669 putative symporter YagG; Provisional
Probab=40.30 E-value=3.1e+02 Score=25.55 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=23.0
Q ss_pred HhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHH
Q 026038 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (244)
Q Consensus 157 ~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~ 199 (244)
.+.|..|+|+.+-.++..-+..|..+.-+-...++...+.|.+
T Consensus 343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888776665555555544433333333333333333
No 105
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.83 E-value=1.7e+02 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=24.3
Q ss_pred ccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHH
Q 026038 166 IDKINKPYLPLASGELSMGTGIAICAGSALLSLALAF 202 (244)
Q Consensus 166 iDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~ 202 (244)
-||.|+ .|.+=+-+|..|.++.+.+..++++.++.
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g~ 39 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLGL 39 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHHH
Confidence 466664 45566678888888888877777765543
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=36.72 E-value=26 Score=34.88 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccccccc
Q 026038 142 LKAVVAQIFMNISLCSLNQICDVEIDKI 169 (244)
Q Consensus 142 llall~~~l~~~a~~~iND~~D~diDri 169 (244)
.++..++.++.+++-.-+|+++.-+|+-
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~ 383 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKG 383 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCC
Confidence 3444566777777778899999988875
No 107
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=35.44 E-value=1.7e+02 Score=30.58 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=31.7
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhhccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 026038 101 NAISHVTRYYAQINIIVSVTSVCFLPVQS--LSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDV 164 (244)
Q Consensus 101 k~~l~LtRP~~~~~~il~~l~G~~lA~~~--~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~ 164 (244)
--|+.+.|++..+..++.++.|.+...+. +-++.......+...++.++...-+....|.|++.
T Consensus 212 vL~~~fr~~~~~llpL~~~l~sv~~tlG~m~llG~plt~~s~~~~~llIgiGidy~vh~~nr~~ee 277 (727)
T COG1033 212 VLYYVFRSVRRALLPLIIVLVSVLWTLGAMGLLGIPLTITTSAVPPLLIGIGIDYGVHFHNRYEEE 277 (727)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555555555555555544444432210 11111111222344455566677778888999875
No 108
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=35.03 E-value=2.4e+02 Score=29.91 Aligned_cols=6 Identities=0% Similarity=0.069 Sum_probs=2.4
Q ss_pred HHHHHH
Q 026038 146 VAQIFM 151 (244)
Q Consensus 146 l~~~l~ 151 (244)
+|+++.
T Consensus 136 LGAILA 141 (810)
T TIGR00844 136 MGACIT 141 (810)
T ss_pred HHhhhc
Confidence 344443
No 109
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.78 E-value=1.6e+02 Score=23.08 Aligned_cols=53 Identities=11% Similarity=-0.021 Sum_probs=27.7
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHcHH-HHHHHHHHHHHHhhhcCCcCCCcchhh
Q 026038 180 ELSMGTGIAICAGSALLSLALAFLSGSP-AVLCAVIAWGLTGAAYSVPVSGLILYN 234 (244)
Q Consensus 180 ~IS~~~Al~~~i~l~~lgl~la~~l~~~-~~ll~ll~~~~l~~~YS~~LK~l~l~~ 234 (244)
+...+.--.+..+..++|++++++.... ..+.++.+++++..+-++ ||..+++
T Consensus 22 kkaEr~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~L--PpwP~y~ 75 (101)
T KOG4112|consen 22 KKAERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITL--PPWPWYR 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhh
Confidence 3444444445555666788888875321 223333445555555555 6655554
No 110
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=34.75 E-value=1.8e+02 Score=22.58 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCccc
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLA 177 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLp 177 (244)
+.+.++-...-.+|-..+.-.|.+.+.+.|..
T Consensus 46 i~~~~~Vl~~EllNTAIE~~vD~v~~~~~~~a 77 (104)
T PF01219_consen 46 ILAIFLVLIAELLNTAIERLVDLVSPEYHPLA 77 (104)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTT----S-TTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHcchhhcHHH
Confidence 34556667778899999999999987788853
No 111
>PRK10429 melibiose:sodium symporter; Provisional
Probab=33.09 E-value=4.3e+02 Score=25.04 Aligned_cols=45 Identities=11% Similarity=0.014 Sum_probs=28.5
Q ss_pred HHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH
Q 026038 156 CSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 156 ~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l 200 (244)
..+.|..|+++.+-.+|..-+..|-.+.-+-...++...+.|.++
T Consensus 347 am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 347 IMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999977766666666666655555555555555555444
No 112
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=32.49 E-value=2.9e+02 Score=22.87 Aligned_cols=49 Identities=14% Similarity=-0.044 Sum_probs=26.3
Q ss_pred ccccccCCC--CCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHcHHHHHHH
Q 026038 164 VEIDKINKP--YLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCA 212 (244)
Q Consensus 164 ~diDrinkp--~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ 212 (244)
+-+|+.... +..=.-|-.||..-+-+.++..+.-+.++...++|.++++
T Consensus 65 rPED~~daEI~dgAGe~GfFsP~SwWPl~la~~~al~~lGla~g~Wl~~iG 115 (137)
T PF12270_consen 65 RPEDREDAEIADGAGELGFFSPHSWWPLVLAAAAALVFLGLAFGWWLILIG 115 (137)
T ss_pred CCccccccccccCCCCcCcCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335654432 4443457788888777666655554444544554443333
No 113
>PRK13595 ubiA prenyltransferase; Provisional
Probab=30.63 E-value=2.1e+02 Score=26.49 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhhhcccccccCC-CCCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHc
Q 026038 149 IFMNISLCSLNQICDVEIDKINK-PYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDrink-p~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~l~ 205 (244)
.+...+..++-++-|+|-||... +.-|+ ++-.+.+..++.++.+++.++...++
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~ 233 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPVS 233 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHhc
Confidence 34446667788888899999765 45665 34456677777777777666555544
No 114
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=30.06 E-value=3.3e+02 Score=22.81 Aligned_cols=21 Identities=10% Similarity=-0.095 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 026038 142 LKAVVAQIFMNISLCSLNQIC 162 (244)
Q Consensus 142 llall~~~l~~~a~~~iND~~ 162 (244)
+++-++....-+.++++++|.
T Consensus 31 ~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 31 ILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777888899998
No 115
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.11 E-value=2e+02 Score=23.07 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=21.2
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHH------cHHHHHHHHHHHHHHhh
Q 026038 179 GELSMGTGIAICAGSALLSLALAFLS------GSPAVLCAVIAWGLTGA 221 (244)
Q Consensus 179 G~IS~~~Al~~~i~l~~lgl~la~~l------~~~~~ll~ll~~~~l~~ 221 (244)
|...+-.-..=.+.-.++|.+++|++ .||.++..+++++..++
T Consensus 41 ~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ 89 (116)
T COG5336 41 GYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGV 89 (116)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 44443333333444555666677765 35654444444454443
No 116
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=26.65 E-value=85 Score=24.00 Aligned_cols=32 Identities=9% Similarity=-0.119 Sum_probs=19.9
Q ss_pred cccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHH
Q 026038 167 DKINKPYLPLASGELSMGTGIAICAGSALLSLALAF 202 (244)
Q Consensus 167 Drinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~ 202 (244)
|++|++.|-+ -.+..|+ ..+.+.+++|++++.
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~~ 38 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSGK 38 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHhh
Confidence 5666666665 6778888 555555555555543
No 117
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=26.62 E-value=2.9e+02 Score=31.11 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhhh---hcc
Q 026038 149 IFMNISLCSLNQI---CDV 164 (244)
Q Consensus 149 ~l~~~a~~~iND~---~D~ 164 (244)
.++...+|.+||= ||+
T Consensus 1297 ALLTIIGYSINDTIVVFDR 1315 (1403)
T PRK12911 1297 ALMTVLGYSLNNTLIIFDR 1315 (1403)
T ss_pred HHHHHhhccccCeEEEeHH
Confidence 3567788999994 564
No 118
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=24.24 E-value=2.7e+02 Score=20.43 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 026038 187 IAICAGSALLSLALAFLSG 205 (244)
Q Consensus 187 l~~~i~l~~lgl~la~~l~ 205 (244)
-....+..++|++.|++..
T Consensus 14 ~~il~~~~iisfi~Gy~~q 32 (76)
T PF06645_consen 14 QYILIISAIISFIVGYITQ 32 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777764
No 119
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=23.86 E-value=3.7e+02 Score=21.73 Aligned_cols=24 Identities=29% Similarity=0.112 Sum_probs=18.1
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Q 026038 178 SGELSMGTGIAICAGSALLSLALA 201 (244)
Q Consensus 178 sG~IS~~~Al~~~i~l~~lgl~la 201 (244)
..-+|+++..++..++.++.++.+
T Consensus 4 nrSLs~~g~~~~~~~~~~~~~~~a 27 (140)
T PF10003_consen 4 NRSLSPRGFLIFIAILAAVSLIIA 27 (140)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445799999888888888776543
No 120
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=23.60 E-value=1.7e+02 Score=25.16 Aligned_cols=52 Identities=23% Similarity=0.125 Sum_probs=29.4
Q ss_pred CCcccCCCcCHHHHHHHHHHHH-H-----HHHHHHHH---HcHHHHHHHHHHHHHHhhhcCC
Q 026038 173 YLPLASGELSMGTGIAICAGSA-L-----LSLALAFL---SGSPAVLCAVIAWGLTGAAYSV 225 (244)
Q Consensus 173 ~RPLpsG~IS~~~Al~~~i~l~-~-----lgl~la~~---l~~~~~ll~ll~~~~l~~~YS~ 225 (244)
+.-...|.+.+....++.+.++ + +|+++... +|+|++.++++ +=+.|++|--
T Consensus 68 ~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~~~L~lL-sPlAG~~Yw~ 128 (173)
T PF12046_consen 68 EVITFEGFVAPSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWPLLLVLL-SPLAGIFYWQ 128 (173)
T ss_pred cEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHH-hhhhhhhhhh
Confidence 4556667777766655433322 2 23344443 35677777654 5666888865
No 121
>PF14045 YIEGIA: YIEGIA protein
Probab=22.67 E-value=3.4e+02 Score=25.22 Aligned_cols=88 Identities=13% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhhcccccc--------cCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHHHH--HcHHHHHHHHHHHHH
Q 026038 149 IFMNISLCSLNQICDVEIDK--------INKPYLPLASGELSMGTGIAICAGSALLSLALAFL--SGSPAVLCAVIAWGL 218 (244)
Q Consensus 149 ~l~~~a~~~iND~~D~diDr--------inkp~RPLpsG~IS~~~Al~~~i~l~~lgl~la~~--l~~~~~ll~ll~~~~ 218 (244)
.++..++.=+-|.=+.|-+. ..+|.-.--.|-=...|++.+..++..+...++++ .++|. +.+.+++
T Consensus 62 TFLaLAaqQFRdVR~mER~tL~~le~~ELV~RG~~YIEgIA~~FEaRNYl~m~ts~~Ts~~~~l~~~~~~---g~i~g~i 138 (285)
T PF14045_consen 62 TFLALAAQQFRDVRNMERETLTNLEETELVPRGAAYIEGIAKTFEARNYLVMFTSFLTSLAYILFFNIWV---GVIAGLI 138 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 34445555566665444222 23333333334445567777766666665544443 34443 2222333
Q ss_pred HhhhcCCcCCCcchhhHHHhh
Q 026038 219 TGAAYSVPVSGLILYNIINLI 239 (244)
Q Consensus 219 l~~~YS~~LK~l~l~~iv~~~ 239 (244)
..++--.-.+.-.+.||.|+-
T Consensus 139 ~~~i~~~~~~g~~i~DIa~V~ 159 (285)
T PF14045_consen 139 AILISKRFMSGKSIGDIADVE 159 (285)
T ss_pred HHHHHHHHcCCCccccceEEE
Confidence 233333334777888888763
No 122
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=22.52 E-value=3.4e+02 Score=20.34 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=28.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccC
Q 026038 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKIN 170 (244)
Q Consensus 133 ~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDrin 170 (244)
+++.++.++....++..+...+..--|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 56655556666667778888888888999998887753
No 123
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=20.73 E-value=38 Score=24.39 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=11.8
Q ss_pred CCcchhhHHHhhh
Q 026038 228 SGLILYNIINLIK 240 (244)
Q Consensus 228 K~l~l~~iv~~~~ 240 (244)
++.|+|||+|+|.
T Consensus 42 ~~RRlYDI~NVLe 54 (71)
T PF02319_consen 42 QRRRLYDIINVLE 54 (71)
T ss_dssp HCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHH
Confidence 8899999999985
No 124
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.26 E-value=3.8e+02 Score=20.03 Aligned_cols=19 Identities=16% Similarity=-0.020 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHcHHH
Q 026038 190 CAGSALLSLALAFLSGSPA 208 (244)
Q Consensus 190 ~i~l~~lgl~la~~l~~~~ 208 (244)
.+.+++++++++++.|...
T Consensus 12 l~~~~l~~~lvG~~~g~~~ 30 (90)
T PF11808_consen 12 LLLLLLAAALVGWLFGHLW 30 (90)
T ss_pred HHHHHHHHHHHHHHHhHHH
Confidence 3344445555666666443
No 125
>PLN02953 phosphatidate cytidylyltransferase
Probab=20.24 E-value=1.7e+02 Score=28.45 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=20.1
Q ss_pred ccccccCC-CCCcccCCCcC-HHHHHHHHHHHHHHHHHHHHHHcHHHHHHH
Q 026038 164 VEIDKINK-PYLPLASGELS-MGTGIAICAGSALLSLALAFLSGSPAVLCA 212 (244)
Q Consensus 164 ~diDrink-p~RPLpsG~IS-~~~Al~~~i~l~~lgl~la~~l~~~~~ll~ 212 (244)
.|+|++|+ ++.+-...+-+ .++.+..++++..+++...++ +.|.|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~RIiSglvl~~l~l~vV~~-GGw~F~~~ 126 (403)
T PLN02953 77 KEIDRIHDLQNVEDKQKKASQLKKRVIFGIGIGLPVGCVVLA-GGWFFTVA 126 (403)
T ss_pred chhhhhcccccccccccccccHHHHHHHHHHHHHHHHheeee-CcHHHHHH
Confidence 34666543 23332332222 334444444444444444443 44544433
Done!