Query 026038
Match_columns 244
No_of_seqs 129 out of 1126
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdc_A Diacylglycerol kinase; 56.5 66 0.0023 24.7 9.8 80 89-178 7-91 (121)
2 1cf7_A Protein (transcription 23.0 25 0.00085 24.9 0.8 13 228-240 44-56 (76)
3 3qkc_B Geranyl diphosphate syn 12.6 3.4E+02 0.012 23.2 5.8 51 146-200 72-122 (273)
4 1wmw_A Geranylgeranyl diphosph 10.5 8E+02 0.027 21.2 7.8 74 100-183 162-238 (330)
5 3aqp_A Probable secdf protein- 8.7 4.6E+02 0.016 25.7 5.8 17 147-163 335-351 (741)
6 3pde_A Farnesyl-diphosphate sy 8.7 9.2E+02 0.031 20.9 7.3 78 100-185 174-254 (309)
7 2h8o_A Geranyltranstransferase 7.6 6.3E+02 0.022 22.2 5.8 78 100-185 211-291 (335)
8 1wy0_A Geranylgeranyl pyrophos 7.6 5.6E+02 0.019 22.4 5.4 76 100-183 167-245 (342)
9 3kra_B Geranyl diphosphate syn 7.6 9.9E+02 0.034 20.2 7.1 53 146-200 67-119 (274)
10 4dx5_A Acriflavine resistance 7.5 2.7E+02 0.0091 28.3 3.5 18 146-163 401-418 (1057)
No 1
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=56.48 E-value=66 Score=24.74 Aligned_cols=80 Identities=15% Similarity=0.309 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026038 89 APSFLEVVKRKLNAISHVTRYYAQIN-----IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICD 163 (244)
Q Consensus 89 ~~~~~~~~~~~lk~~l~LtRP~~~~~-----~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D 163 (244)
.+.+++.....++.+....|-+..+- .++...+|.++.. +...|. .++.++.+-...-.+|--.+
T Consensus 7 ~~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~~---s~~e~~-------~li~~i~lVl~~EllNTAIE 76 (121)
T 2kdc_A 7 FTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDV---DAITRV-------LLISSVMLVMIVEILNSAIE 76 (121)
T ss_dssp HHHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCCC---CCSHHH-------HHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhC---CHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677766665432222 2222233333332 122231 12445667777888999999
Q ss_pred ccccccCCCCCcccC
Q 026038 164 VEIDKINKPYLPLAS 178 (244)
Q Consensus 164 ~diDrinkp~RPLps 178 (244)
.-.|++.+.+.|+..
T Consensus 77 ~vvD~v~~e~h~lak 91 (121)
T 2kdc_A 77 AVVDRIGSEYHELSG 91 (121)
T ss_dssp HHHTTCCCCSCTTSH
T ss_pred HHHHHcCCccCHHHH
Confidence 999998887888754
No 2
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=22.96 E-value=25 Score=24.94 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.8
Q ss_pred CCcchhhHHHhhh
Q 026038 228 SGLILYNIINLIK 240 (244)
Q Consensus 228 K~l~l~~iv~~~~ 240 (244)
++.|+|||+|||.
T Consensus 44 ~kRRiYDI~NVLe 56 (76)
T 1cf7_A 44 QKRRIYDITNVLE 56 (76)
T ss_dssp CTHHHHHHHHHHH
T ss_pred cceehhhHHHHHh
Confidence 7999999999985
No 3
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=12.60 E-value=3.4e+02 Score=23.18 Aligned_cols=51 Identities=10% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l 200 (244)
.+.=+++.++-+..|+.|.+. +|.||-+..+.....|+..+=.++..++-+
T Consensus 72 ~aiEliH~aSLIHDDI~D~d~----RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 122 (273)
T 3qkc_B 72 AAVHLMHVAAYTHENLPLTDG----PMSKSEIQHKFDPNIELLTGDGIIPFGLEL 122 (273)
T ss_dssp HHHHHHHHHHHHHHSCCBTTB----CSSSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcc----CCCCCCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 466789999999999998764 456888888888888888887777777644
No 4
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=10.49 E-value=8e+02 Score=21.25 Aligned_cols=74 Identities=9% Similarity=0.055 Sum_probs=44.3
Q ss_pred HHHHHHhhchhhHHH-HHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc-cCCC-CCcc
Q 026038 100 LNAISHVTRYYAQIN-IIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK-INKP-YLPL 176 (244)
Q Consensus 100 lk~~l~LtRP~~~~~-~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr-inkp-~RPL 176 (244)
...|++..+-+|... ...++-+|+.++.... . .. +. - .+..+-.+-++.+|+.|+.-|. ..|| ..=+
T Consensus 162 ~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~-~--~~-l~-----~-~g~~lG~aFQi~DD~ld~~~d~~~GK~~g~Dl 231 (330)
T 1wmw_A 162 PEDYFRMVAHKAAYYTAVAPLRLGALLAGKTP-P--AA-YE-----E-GGLRLGTAFQIVDDVLNLEGGEAYGKERAGDL 231 (330)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC-C--HH-HH-----H-HHHHHHHHHHHHHHHHHHSCSCCCSSSTTHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHcCCCH-H--HH-HH-----H-HHHHHHHHHHHHHccCcccCCcccCCCcCchh
Confidence 577999999999988 7777778888875321 1 11 11 1 1123334456789999987554 4443 2223
Q ss_pred cCCCcCH
Q 026038 177 ASGELSM 183 (244)
Q Consensus 177 psG~IS~ 183 (244)
-.|+.|.
T Consensus 232 ~egK~T~ 238 (330)
T 1wmw_A 232 YEGKRTL 238 (330)
T ss_dssp HHTCCCH
T ss_pred hCCCCCH
Confidence 4455543
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=8.73 E-value=4.6e+02 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhhhhhc
Q 026038 147 AQIFMNISLCSLNQICD 163 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D 163 (244)
.+.....+...++.+.+
T Consensus 335 iGi~VD~~I~i~eri~e 351 (741)
T 3aqp_A 335 LGAAVDGNVLSFERIKE 351 (741)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhHHHHHH
Confidence 33444445555555543
No 6
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=8.68 E-value=9.2e+02 Score=20.93 Aligned_cols=78 Identities=12% Similarity=0.012 Sum_probs=43.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cCCC-CCcc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK--INKP-YLPL 176 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr--inkp-~RPL 176 (244)
...|.+..+-+|......++.+|+.++...... ...+. - .+..+-.+-++.+|+.|+.-|. ..|| ..=+
T Consensus 174 ~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~--~~~l~-----~-~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl 245 (309)
T 3pde_A 174 LSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQ--WPAYL-----Q-FADAFGLAFQIYDDILDVVSSPAEMGKATQKDA 245 (309)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGG--HHHHH-----H-HHHHHHHHHHHHHHHHHHHCC-----------C
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHH--HHHHH-----H-HHHHHHHHHHHHHHHHhccCCHHHhCCCccchh
Confidence 467888899999888888888888887532111 11111 1 1122334456789999997654 4455 3446
Q ss_pred cCCCcCHHH
Q 026038 177 ASGELSMGT 185 (244)
Q Consensus 177 psG~IS~~~ 185 (244)
-.|+.|.--
T Consensus 246 ~egK~T~p~ 254 (309)
T 3pde_A 246 DEAKNTYPG 254 (309)
T ss_dssp TTTSSSHHH
T ss_pred hcCCccHHH
Confidence 667777543
No 7
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=7.64 E-value=6.3e+02 Score=22.23 Aligned_cols=78 Identities=10% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cCCC-CCcc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK--INKP-YLPL 176 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr--inkp-~RPL 176 (244)
...|++..+-+|......++-+|+.++... ..... .+.-++ ..+-.+-++.+|+.|+.-|. ..|| ..=+
T Consensus 211 ~~~y~~i~~~KTa~L~~~a~~~Ga~laga~-----~~~~~--~l~~~g-~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl 282 (335)
T 2h8o_A 211 EDGIITLQAMKTGALLRFACEAGAIIAGSN-----QAERQ--RLRLFG-EKIGLSFQLADDLLDLTADAATMGKATGKDA 282 (335)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTCC-----HHHHH--HHHHHH-HHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHhCCC-----HHHHH--HHHHHH-HHHHHHHHHHHHHHHhcCCHHHhCCCcchHH
Confidence 457999999999888878888888887521 11110 011111 22334446789999997664 4454 3445
Q ss_pred cCCCcCHHH
Q 026038 177 ASGELSMGT 185 (244)
Q Consensus 177 psG~IS~~~ 185 (244)
-.|+.|.--
T Consensus 283 ~egK~T~p~ 291 (335)
T 2h8o_A 283 ARGKGTLVA 291 (335)
T ss_dssp ---CCCHHH
T ss_pred hcCCccHHH
Confidence 566666543
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=7.57 E-value=5.6e+02 Score=22.36 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc--cCCC-CCcc
Q 026038 100 LNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK--INKP-YLPL 176 (244)
Q Consensus 100 lk~~l~LtRP~~~~~~il~~l~G~~lA~~~~~~~~~~~l~~lllall~~~l~~~a~~~iND~~D~diDr--inkp-~RPL 176 (244)
...|++..+-+|...+..++-+|+.++... ..... . +.- .+..+-.+-++.+|+.|+.-|. ..|| ..=+
T Consensus 167 ~~~y~~~i~~KTa~L~~~~~~~ga~lag~~-----~~~~~-~-l~~-~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl 238 (342)
T 1wy0_A 167 IEEYMEMISGKTGALFEASAKVGGIIGTDN-----EEYIK-A-LSS-WGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDI 238 (342)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHCCC-----HHHHH-H-HHH-HHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCC-----HHHHH-H-HHH-HHHHHHHHHHHHHHHHhccCChhhhCCCchhHH
Confidence 467899999999888888888888887532 11110 1 111 1223334456789999987553 3444 2223
Q ss_pred cCCCcCH
Q 026038 177 ASGELSM 183 (244)
Q Consensus 177 psG~IS~ 183 (244)
-.|+.|.
T Consensus 239 ~egK~Tl 245 (342)
T 1wy0_A 239 RKGKKTL 245 (342)
T ss_dssp HHTCCCH
T ss_pred hCCCCcH
Confidence 3444443
No 9
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=7.56 E-value=9.9e+02 Score=20.16 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l 200 (244)
.+.=+++.++-+..|+.+-|-| .+|.+|-...+.....|+..+=.++..++-+
T Consensus 67 ~aiEliH~aSLIHDDI~~dD~d--~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 67 AAIHLVHAAAYVHEHLPLTDGS--RPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHHHHHHHHHHHTCCCSSSS--SCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCc--cCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 4567899999999999833445 2578888888888888888887777777644
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=7.46 E-value=2.7e+02 Score=28.32 Aligned_cols=18 Identities=0% Similarity=0.172 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 026038 146 VAQIFMNISLCSLNQICD 163 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D 163 (244)
+.++....+...++.+.+
T Consensus 401 ~iGi~vd~aIv~~~~~~~ 418 (1057)
T 4dx5_A 401 AIGLLVDDAIVVVENVER 418 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HeeccccceEEeHHHHHH
Confidence 344455566666665554
Done!