Query 026038
Match_columns 244
No_of_seqs 129 out of 1126
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 04:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026038.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026038hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 39.3 41 0.003 25.4 7.1 53 147-199 103-155 (199)
2 d1cf7a_ a.4.5.17 (A:) Cell cyc 34.7 5.5 0.0004 26.3 0.8 13 228-240 39-51 (67)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 14.1 94 0.0068 16.8 3.2 24 200-223 10-33 (34)
4 d1rtra_ a.128.1.1 (A:) Farnesy 13.6 60 0.0044 25.9 3.3 54 146-200 68-121 (290)
5 d1iwga8 f.35.1.1 (A:513-566,A: 11.9 2.8E+02 0.02 20.6 10.9 56 144-199 118-173 (222)
6 d1gl0i_ g.4.1.1 (I:) Protease 10.9 33 0.0024 18.8 0.5 8 18-25 3-10 (32)
7 d2dlqa1 g.37.1.1 (A:93-118) GL 10.8 36 0.0026 17.6 0.6 8 37-44 2-9 (26)
8 d1wo9a_ g.4.1.1 (A:) Protease 9.3 40 0.0029 18.9 0.5 8 18-25 5-12 (35)
9 d1rqja_ a.128.1.1 (A:) Farnesy 7.3 2.3E+02 0.017 22.1 4.8 55 145-200 70-124 (299)
10 d1bhia_ g.37.1.1 (A:) Transact 5.5 1E+02 0.0074 17.6 1.0 11 17-27 10-20 (38)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=39.34 E-value=41 Score=25.45 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHH
Q 026038 147 AQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (244)
Q Consensus 147 ~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~ 199 (244)
.+.....+...+.++......+-+++..-+..+--+...+...+.+..+++++
T Consensus 103 igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~~i~~s~lTt~~~f~ 155 (199)
T d1iwga7 103 IGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFV 155 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHHHHHHHHHHHHHHHT
T ss_pred HHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 33334444444444433322333333333444444555556665555555554
No 2
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.66 E-value=5.5 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=11.8
Q ss_pred CCcchhhHHHhhh
Q 026038 228 SGLILYNIINLIK 240 (244)
Q Consensus 228 K~l~l~~iv~~~~ 240 (244)
++.++|||+|+|.
T Consensus 39 ~kRRiYDI~NVLe 51 (67)
T d1cf7a_ 39 QKRRIYDITNVLE 51 (67)
T ss_dssp CTHHHHHHHHHHH
T ss_pred chhhHHHHHHHHh
Confidence 7899999999985
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=14.09 E-value=94 Score=16.84 Aligned_cols=24 Identities=29% Similarity=0.193 Sum_probs=10.3
Q ss_pred HHHHHcHHHHHHHHHHHHHHhhhc
Q 026038 200 LAFLSGSPAVLCAVIAWGLTGAAY 223 (244)
Q Consensus 200 la~~l~~~~~ll~ll~~~~l~~~Y 223 (244)
+++--|+.+|-++.+..++....|
T Consensus 10 layekgwlafslamlfvfialiay 33 (34)
T d1xmeb2 10 LAYEKGWLAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhc
Confidence 344445544444443333333344
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=13.59 E-value=60 Score=25.89 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH
Q 026038 146 VAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 146 l~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l 200 (244)
.+.=+++.+.-+..|+.|.|.|.. +|.+|-...+.....|...+-.+...++-+
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 466799999999999998887765 446777777777777777777666666544
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=11.94 E-value=2.8e+02 Score=20.64 Aligned_cols=56 Identities=5% Similarity=-0.133 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHH
Q 026038 144 AVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLA 199 (244)
Q Consensus 144 all~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~ 199 (244)
.++.+.....+...+.++.+.+.++-..+++-+..+.-..........+..++|++
T Consensus 118 i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~ 173 (222)
T d1iwga8 118 LTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVM 173 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 33455566666666666655433332233444444444444455555555555553
No 6
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=10.89 E-value=33 Score=18.82 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=6.2
Q ss_pred CCCCcccc
Q 026038 18 SPGCSRKF 25 (244)
Q Consensus 18 ~~~~~~~~ 25 (244)
+|||.||+
T Consensus 3 tpg~tkk~ 10 (32)
T d1gl0i_ 3 TPGQVKQQ 10 (32)
T ss_dssp CTTCEEEC
T ss_pred CCCccccc
Confidence 68888775
No 7
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.76 E-value=36 Score=17.60 Aligned_cols=8 Identities=63% Similarity=0.775 Sum_probs=5.5
Q ss_pred ccccCCCC
Q 026038 37 SIKCSSQS 44 (244)
Q Consensus 37 ~~~~~~~~ 44 (244)
|.+||+-|
T Consensus 2 pykcsscs 9 (26)
T d2dlqa1 2 PYKCSSCS 9 (26)
T ss_dssp SEECSSSC
T ss_pred CCcccHHH
Confidence 56777766
No 8
>d1wo9a_ g.4.1.1 (A:) Protease inhibitor SGTI {Desert locust (Schistocerca gregaria) [TaxId: 7010]}
Probab=9.33 E-value=40 Score=18.86 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=6.3
Q ss_pred CCCCcccc
Q 026038 18 SPGCSRKF 25 (244)
Q Consensus 18 ~~~~~~~~ 25 (244)
+|||.||+
T Consensus 5 TPG~tKk~ 12 (35)
T d1wo9a_ 5 TPGQTKKQ 12 (35)
T ss_dssp CTTCEEEE
T ss_pred CCCccccc
Confidence 68888875
No 9
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=7.28 E-value=2.3e+02 Score=22.15 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccCCCCCcccCCCcCHHHHHHHHHHHHHHHHHH
Q 026038 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLAL 200 (244)
Q Consensus 145 ll~~~l~~~a~~~iND~~D~diDrinkp~RPLpsG~IS~~~Al~~~i~l~~lgl~l 200 (244)
..+.=++|.++-+..|+.|.|-|.. +|.+|-...+.....|+..+-.++..++-+
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 3577899999999999999886643 335565555666677777766666665543
No 10
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.48 E-value=1e+02 Score=17.61 Aligned_cols=11 Identities=36% Similarity=1.207 Sum_probs=0.0
Q ss_pred CCCCCcccccc
Q 026038 17 QSPGCSRKFAS 27 (244)
Q Consensus 17 ~~~~~~~~~~~ 27 (244)
.+|||..+|++
T Consensus 10 ~~pGC~q~F~n 20 (38)
T d1bhia_ 10 TAPGCGQRFTN 20 (38)
T ss_dssp CCTTTCCEESS
T ss_pred CCCCccccccc
Done!