RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 026038
(244 letters)
>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase.
Length = 280
Score = 137 bits (348), Expect = 1e-39
Identities = 50/109 (45%), Positives = 73/109 (66%)
Query: 117 VSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPL 176
+ +TSV L V+SLS +P F G+L+A+V + MNI + LNQ+ D+EIDK+NKPYLPL
Sbjct: 1 LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60
Query: 177 ASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSV 225
ASGE S+ TG+AI A++S + ++ GS + A+ + G AYS+
Sbjct: 61 ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSI 109
>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed.
Length = 308
Score = 85.4 bits (212), Expect = 1e-19
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIA 188
S + + A L +L A +A + N+ + LNQ+ D+EID+INKP+LPLA+GE S G
Sbjct: 43 SSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQR 102
Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVP 226
I + +L+L LA L G P +L V L G AYS+P
Sbjct: 103 IVIITGILALILAALLG-PWLLITVGISLLIGTAYSLP 139
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 64.5 bits (157), Expect = 3e-12
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 129 SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKI--NKPYLPLASGELSMGTG 186
+L+ LL +L ++A + + + LN D EID NKP PL SG +S
Sbjct: 13 ALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREA 72
Query: 187 IAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
+ + LL L LA L G +L ++ L G YS P+
Sbjct: 73 LLLGLALLLLGLLLALLLGPLLLLLGLLGLLL-GLLYSPPL 112
Score = 31.3 bits (71), Expect = 0.36
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Query: 107 TRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEI 166
+ + +V + L + V +L + +++++ N I DVE
Sbjct: 114 LKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEG 173
Query: 167 DKIN-KPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVL---CAVIAWGLTGAA 222
D+ LP+ G A+ +ALL L L L +P +L ++A L AA
Sbjct: 174 DRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAA 233
Query: 223 YSV 225
+
Sbjct: 234 RLL 236
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 61.9 bits (151), Expect = 2e-11
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 138 LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKP--YLPLASGELSMGTGIAICAGSAL 195
L +L A +A + +N + D EID+IN PL SG +S+ + + L
Sbjct: 46 LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLL 105
Query: 196 LSLALAFLSGSPAVLCAVIAWGLTGAAY 223
L LALA L A L +A + AY
Sbjct: 106 LGLALALLLNPLAFL-LSLAALVLALAY 132
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 52.7 bits (127), Expect = 3e-08
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 17/139 (12%)
Query: 97 KRKLNAISHVTRYYAQINIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLC 156
+ K+ A + R + ++V + + L + A LLG L A A N
Sbjct: 1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP-LDEA-LLGFLTAFFASGSANA--- 55
Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
LN D E+D+IN+P P+ SG +S + + +L L A+L A L ++
Sbjct: 56 -LNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS 114
Query: 217 GLTGAAYSVPVSGLILYNI 235
L ILYN
Sbjct: 115 VL-----------GILYNW 122
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 50.3 bits (121), Expect = 2e-07
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIA 215
+N I D+EIDKINKP P+ SG +S+ ++ L L+ A L A++
Sbjct: 56 INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLN 113
>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
Reviewed.
Length = 314
Score = 47.6 bits (114), Expect = 2e-06
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG 217
LN D E+D IN+PY P+ SG +S+ + + A +L LA+A+L G P V A +
Sbjct: 84 LNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLG-PWVFLAALLGL 142
Query: 218 LTGAAYSVP 226
YS P
Sbjct: 143 FLAWIYSAP 151
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 47.2 bits (113), Expect = 2e-06
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 126 PVQSLSQVTPAFLLGVLKAVVAQIFMNISLCS-----LNQICDVEIDKI--NKPYLPLAS 178
P+ + + + P LL VL A V F L S +N I DVE D++ K P+AS
Sbjct: 33 PIFAGNLLNPGALLKVLLAFVL--F---CLASSAVYLVNDIRDVEADRLHPTKRNRPIAS 87
Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
G +S+ + + SLALA+L SP + ++ + + AYS
Sbjct: 88 GVVSVSLAYILAVVLLVASLALAYLL-SPKLALVLLVYLVLNLAYS 132
>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll
synthetase. This model describes a subfamily of a large
family of polyprenyltransferases (pfam01040) that also
includes 4-hydroxybenzoate octaprenyltransferase and
protoheme IX farnesyltransferase (heme O synthase).
Members of this family are found exclusively in
photosynthetic organisms, including a single copy in
Arabidopsis thaliana [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 283
Score = 43.6 bits (103), Expect = 4e-05
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAW 216
S+N D ++D IN+P P+ SG +S+ + L +A + G+ ++ +
Sbjct: 56 SINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVG 115
Query: 217 GLTGAAYSVP 226
+ YS+P
Sbjct: 116 IVLAVIYSMP 125
>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 43.3 bits (103), Expect = 5e-05
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 141 VLKAVVAQIFMNISLCS-----LNQICDVEIDKIN--KPYLPLASGELSMGTGIAICAGS 193
+L A++A F+ SLC+ LN + D+E D+ + K P ASG L + G+A
Sbjct: 225 LLAALLA--FLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLL 282
Query: 194 ALLSLALAFLSGSPAVLCAVIAWGLTGAAYS 224
L LALA PA L ++A+ AYS
Sbjct: 283 LLAGLALALA-LGPAFLLVLLAYLALTLAYS 312
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 42.8 bits (101), Expect = 6e-05
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 136 AFLLGVLKAVVAQ-----------IFMNISL-CS----LNQICDVEIDKINKPYLPLASG 179
A ++G+L ++VA IF+ + L CS +N D EIDKIN+P PL G
Sbjct: 18 AGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77
Query: 180 ELSMGTGIAICAGSAL--LSLALAFLSGSPAVLCAVIAWGLT 219
+M A+ L + LALA+L A L A+ A+ L
Sbjct: 78 --AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLM 117
>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 36.8 bits (86), Expect = 0.006
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 133 VTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK--PYLPLASGELSMGTGIAIC 190
+ P L VL ++ + M + C +N I D +IDK PLASG LS+ + +
Sbjct: 40 LLPDISLLVL-FIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILL 98
Query: 191 AGSALLSLALAFLSGSPAVLCAVIA 215
L++L + L + + IA
Sbjct: 99 FILLLIALVILLLLNKTTIYLSFIA 123
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 36.5 bits (85), Expect = 0.007
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 158 LNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIA 215
+N D EID+IN+P P+ SG +S +A S LL A L+ LC IA
Sbjct: 57 INDYFDREIDRINRPDRPIPSGAVSPRGALAF---SILLFAAGVALAFLLPPLCLAIA 111
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 34.9 bits (81), Expect = 0.024
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 131 SQVTPAF-LLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPYL------PLASGELSM 183
+ P L+G++ ++ + + + C +N + D +ID P + PLAS LS+
Sbjct: 39 AHGLPPLPLVGII--ILGALATSAAGCVVNDLWDRDID----PQVERTRFRPLASRRLSV 92
Query: 184 GTGIAICAGSALLSLALAF 202
GI I + L + LAF
Sbjct: 93 KVGIVIAIVALLCAAGLAF 111
>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional.
Length = 375
Score = 35.2 bits (81), Expect = 0.025
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFL------SGSPAVL 210
++N D EID IN+PY P+ SG +S I L L LA+ P V
Sbjct: 141 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVF 200
Query: 211 CAVIAWGLTGAAYSVP 226
+ L YS P
Sbjct: 201 YLALGGSLLSYIYSAP 216
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase,
proteobacterial. This model represents a family of
integral membrane proteins that condenses
para-hydroxybenzoate with any of several
polyprenyldiphosphates. Heterologous expression studies
suggest that for, many but not all members, the activity
seen (e.g. octaprenyltransferase in E. coli) reflects
available host isoprenyl pools rather than enzyme
specificity. A fairly deep split by both clustering
(UPGMA) and phylogenetics (NJ tree) separates this group
(mostly Proteobacterial and mitochondrial), with several
characterized members, from another group (mostly
archaeal and Gram-positive bacterial) lacking
characterized members [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 281
Score = 32.7 bits (75), Expect = 0.13
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 135 PAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDK--INKPYLPLASGELSMGTGIAICAG 192
P +LLG+ V I M + C +N I D + D PLASG +S+ I
Sbjct: 38 PLYLLGLF--TVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLV 95
Query: 193 SALLSLALAFLSGSPAVLCAVIA 215
L++L + +L V +
Sbjct: 96 QLLVALGVLLQLNPLTILLGVAS 118
>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional.
Length = 331
Score = 32.7 bits (75), Expect = 0.15
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 157 SLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLSG 205
S+N D+E+D++N+P P+ SG LS + LL++ L G
Sbjct: 68 SVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLG 116
>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG. This model represents
the strictly cyanobacterial and plant-specific
chlorophyll synthase ChlG. ChlG is the enzyme (esterase)
which attaches the side chain moiety onto chlorophyllide
a. Both geranylgeranyl and phytyl pyrophosphates are
substrates to varying degrees in enzymes from different
sources. Thus, ChlG may act as the final or penultimate
step in chlorophyll biosynthesis (along with the
geranylgeranyl reductase, ChlP) [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 306
Score = 31.9 bits (72), Expect = 0.26
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 157 SLNQICDVEIDKINKPYLPLASGELS 182
++N D +ID IN+PY P+ SG +S
Sbjct: 72 TINDFYDRDIDAINEPYRPIPSGAIS 97
>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed.
Length = 285
Score = 31.8 bits (73), Expect = 0.28
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 114 NIIVSVTSVCFLPVQSLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINKPY 173
N++++ + + SL P L +L + + I +N + D+E D INKP
Sbjct: 15 NLLIAALGQSLVYMASLLLGLPISWLLLLITFLIAAAVYI----INYLTDLEEDIINKPE 70
Query: 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLI 231
+ S + G + + L L + G P I + G YSV +
Sbjct: 71 RVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFFKRRL 128
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 31.8 bits (73), Expect = 0.28
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 154 SLCSLNQICDVEIDKI-----NKPYLPLASGELSMGTGIAICAGSALLSLA-LAFLSGSP 207
S + N D +IDK N+ PL +G +S +A +L +A LA
Sbjct: 50 SANAFNMYIDRDIDKKMKRTRNR---PLVTGRISPREALAFGLLLGVLGVAILAAFVNPL 106
Query: 208 AVLCAVIAWGLTGAAYSVPVSGLILYNII 236
A L + Y++ + N +
Sbjct: 107 AALLGLFGIFFYVIVYTIWLKRRTPQNTV 135
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 31.0 bits (71), Expect = 0.49
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 137 FLLGVLKAVVAQIFMNISLCSLNQICDVEIDK-----INKPYLPLASGELSMGTGIAICA 191
F+LGV M + C +N D + D N+P LASG +S +A+
Sbjct: 47 FVLGV-------FLMRAAGCVINDYADRDFDGHVKRTKNRP---LASGAVSEKEALALFV 96
Query: 192 GSALLSLALAFLSGSPAVLCAVIAWGLTG 220
L++ L + + +V A L
Sbjct: 97 VLVLVAFLLVLTLNTLTIWLSVAALALAW 125
>gnl|CDD|192905 pfam11982, DUF3483, Domain of unknown function (DUF3483). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is about 230
amino acids in length. This domain is found associated
with pfam02754.
Length = 224
Score = 30.4 bits (69), Expect = 0.62
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 191 AGSALLSLALAFLSGSPAVLCAVIAWGLTGAAY 223
AG +L+ L L + ++ W L AA
Sbjct: 71 AGGFVLASVLVILVYGLGLASRILGWLLLAAAL 103
>gnl|CDD|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the
Salmonella typhimurium Zn2+ transporter ZntB-like
subfamily. The MIT superfamily of essential membrane
proteins is involved in transporting divalent cations
(uptake or efflux) across membranes. The ZntB-like
subfamily includes the Zn2+ transporter Salmonella
typhimurium ZntB which mediates the efflux of Zn2+ (and
Cd2+). Structures of the intracellular domain of Vibrio
parahaemolyticus and Salmonella typhimurium ZntB form
funnel-shaped homopentamers, the tip of the funnel is
formed from two C-terminal transmembrane (TM) helices
from each monomer, and the large opening of the funnel
from the N-terminal cytoplasmic domains. The GMN
signature motif of the MIT superfamily occurs just after
TM1, mutation within this motif is known to abolish Mg2+
transport through Salmonella typhimurium CorA, and
Mrs2p. Natural variants such as GVN and GIN which occur
in proteins belonging to this subfamily, may be
associated with the transport of different divalent
cations, such as zinc and cadmium. The functional
diversity of MIT transporters may also be due to minor
structural differences regulating gating, substrate
selection, and transport.
Length = 290
Score = 29.9 bits (68), Expect = 1.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 174 LPLASGELSMGTGIA--ICAGSALLSLALAFLSG 205
LPLA G G IA + +A L+ L G
Sbjct: 257 LPLAEGP--HGFWIAVALALLAAGLAYLLLRRLG 288
>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate
polyprenyltransferase. A fairly deep split separates
this polyprenyltransferase subfamily from the set of
mitochondrial and proteobacterial 4-hydroxybenzoate
polyprenyltransferases, described in TIGR01474.
Protoheme IX farnesyltransferase (heme O synthase)
(TIGR01473) is more distantly related. Because no
species appears to have both this protein and a member
of TIGR01474, it is likely that This model represents
4-hydroxybenzoate polyprenyltransferase, a critical
enzyme of ubiquinone biosynthesis, in the Archaea,
Gram-positive bacteria, Aquifex aeolicus, the
Chlamydias, etc [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 282
Score = 28.9 bits (65), Expect = 2.1
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 135 PAFLLGVLKAVVAQIF-MNISLCSLNQICDVEIDKIN--KPYLPLASGELSMGTGIAICA 191
+L ++ AV A+ M + N+I D ID N PL SG +S +
Sbjct: 36 KTLILILIAAVSARTAAM-----AFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90
Query: 192 GSALLSLALAFLSGSPAVLCAVIA 215
S L L+ ++ A + + +
Sbjct: 91 LSLALFLSASYFLNPLAFILSPLV 114
>gnl|CDD|237613 PRK14109, PRK14109, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 1007
Score = 29.0 bits (66), Expect = 2.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 191 AGSAL---LSLALAFLSGSPAVLCAVIAWGLTGA 221
A +AL L++A A + GS V AVIA G GA
Sbjct: 193 ADAALEAALAVARAEVPGSAPVRLAVIAMGKCGA 226
>gnl|CDD|137367 PRK09541, emrE, multidrug efflux protein; Reviewed.
Length = 110
Score = 27.6 bits (61), Expect = 2.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Query: 182 SMGTGIAICAGSALLSLALAFL---------SGSPAVLCAVIAWGLTGAAYSVP-VSGLI 231
S+GT I CA LL+ LA++ SG VL ++++WG G +P + G++
Sbjct: 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMM 92
Query: 232 L 232
L
Sbjct: 93 L 93
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 28.6 bits (64), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 203 LSGSPAVLCAVIAWGLTGAAYSVPVSGLILY 233
L VL AVIA G+ G ++V + ++Y
Sbjct: 146 LLERKEVLAAVIAGGVVGLLFAVFLVMFLVY 176
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 28.8 bits (65), Expect = 2.9
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 15/158 (9%)
Query: 89 APSFLEVVKRK---LNAISHVTRYYAQINIIVSVTS-VCFLPVQSLSQVTPAFLLGVLKA 144
AP FL+ V + L AI ++ + S + L + FLL +
Sbjct: 320 APKFLKKVDKSGVPLRAI-----------LLSTAISLLAVLLASLNPAIVFNFLLAISGL 368
Query: 145 VVAQIFMNISLCSLNQICDVEIDKINKPYLPLASGELSMGTGIAICAGSALLSLALAFLS 204
+ ++ ISL L + + LP + G + + A +L + + S
Sbjct: 369 IGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKACLGPFGVILGLAALITILLIQALYAS 428
Query: 205 GSPAVLCAVIAWGLTGAAYSVPVSGLILYNIINLIKHN 242
A Y + + LIL + L N
Sbjct: 429 LPVPKPPKNWGAASFAALYLIALLFLILLIGVKLHVKN 466
>gnl|CDD|237242 PRK12874, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 28.0 bits (63), Expect = 4.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 135 PAFLLGVLKAVVAQIF-MNISLCSLNQICDVEIDKINKPYL---PLASGELSMGTGIAIC 190
+LG+L AV A+ F M + N++ D +IDK N P P G +S+ + +
Sbjct: 47 KLLILGILAAVSARNFAM-----AFNRLVDRDIDKDN-PRTANRPSVDGRISVKSMVLFI 100
Query: 191 AGSALLSLALAFL 203
+AL+ + +++
Sbjct: 101 VLNALIFIGVSYF 113
>gnl|CDD|220569 pfam10101, DUF2339, Predicted membrane protein (DUF2339). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 738
Score = 28.1 bits (63), Expect = 4.5
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 181 LSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPV 227
L A+ ++ LA L P + AV+ GL G ++ P+
Sbjct: 88 LPPTVAFALLVLVTAGTVVLALLQNGPLL--AVL--GLLG-GFAAPL 129
>gnl|CDD|220991 pfam11127, DUF2892, Protein of unknown function (DUF2892). This
family is conserved in bacteria. The function is not
known.
Length = 66
Score = 26.1 bits (58), Expect = 4.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 189 ICAGSALLSLALAFLSGSPAVLCAVIAWGLTGAA 222
I AG LL+LAL L G L ++ L
Sbjct: 14 IIAGLVLLALALLGLLGGWGWLLGLVGAVLLLTG 47
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 27.9 bits (63), Expect = 5.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 182 SMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWG--LTGAAYSVPVSGLILYNI 235
++ G+ CA S LL L L+ P + ++ G L G S+ +G IL+ I
Sbjct: 83 AVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGI 138
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 28.0 bits (63), Expect = 6.0
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 23/82 (28%)
Query: 176 LASGELSMGTGIAICAGS-----------------------ALLSLALAFLSGSPAVLCA 212
L + I I GS AL L +VL
Sbjct: 269 FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVL 328
Query: 213 VIAWGLTGAAYSVPVSGLILYN 234
+G + + VP++ LI +
Sbjct: 329 FFLFGFSAGLFIVPLNALIQFR 350
>gnl|CDD|233568 TIGR01774, PFL2-3, glycyl radical enzyme, PFL2/glycerol dehydratase
family. This family previously was designated pyruvate
formate-lyase, but it now appears that members include
the B12-independent glycerol dehydratase. Therefore, the
functional definition of the family is being broadened.
This family includes the PflF and PflD proteins of E.
coli, described as isoforms of pyruvate-formate lyase
found in a limited number additional species. PFL
catalyzes the reaction pyruvate + CoA -> acetyl-CoA +
formate, which is a step in the fermentation of glucose.
Length = 786
Score = 27.9 bits (62), Expect = 6.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 70 ALQDGHALQQSEDDNKPAAAPSFLEVVKRKLNA-ISHVTRYYAQINIIVSVTSVCFLPVQ 128
AL +G LQ + P FLE + KL ISH + + + ++ + P
Sbjct: 456 ALNEGVDLQFGYEFGAKTEKPKFLEDLLEKLREQISHYVKLVVEGSNVLDYANAEVKPTP 515
Query: 129 SLS 131
LS
Sbjct: 516 LLS 518
>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and
mitochondrial malate dehydrogenases. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. Members of this subfamily are
localized to the glycosome and mitochondria. MDHs are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 310
Score = 27.5 bits (62), Expect = 6.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 191 AGSALLSLALA-------FLSG----SPAVLCAVIAWGLTGAAY-SVPVS 228
AGSA LS+A A L G + CA + +T A + + PV
Sbjct: 220 AGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESDVTEAPFFATPVE 269
>gnl|CDD|133463 cd06853, GT_WecA_like, This subfamily contains Escherichia coli
WecA, Bacillus subtilis TagO and related proteins. WecA
is an UDP-N-acetylglucosamine
(GlcNAc):undecaprenyl-phosphate (Und-P)
GlcNAc-1-phosphate transferase that catalyzes the
formation of a phosphodiester bond between a
membrane-associated undecaprenyl-phosphate molecule and
N-acetylglucosamine 1-phosphate, which is usually
donated by a soluble UDP-N-acetylglucosamine precursor.
WecA participates in the biosynthesis of O antigen LPS
in many enteric bacteria and is also involved in the
biosynthesis of enterobacterial common antigen. A
conserved short sequence motif and a conserved arginine
at a cytosolic loop of this integral membrane protein
were shown to be critical in recognition of substrate
UDP-N-acetylglucosamine.
Length = 249
Score = 27.5 bits (62), Expect = 6.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 185 TGIAICAGSALLSLALAFLSGSPAVLCAVIAWGLTG 220
G+A+ A AL LAL A+L +A L G
Sbjct: 127 GGVALIASLALAILALLNGQVLVALLALALAGALLG 162
>gnl|CDD|110480 pfam01481, Arteri_nucleo, Arterivirus nucleocapsid protein.
Length = 116
Score = 26.5 bits (58), Expect = 7.1
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 46 FSFPNQNKISHNNNKPPCKPLVPLALQDG--HALQQSE 81
Q++ K P KP PLA D H L Q E
Sbjct: 29 IRQAGQSRGKGRKKKKPEKPHFPLAEPDDLRHHLTQQE 66
>gnl|CDD|237154 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 27.6 bits (62), Expect = 7.7
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Query: 174 LPLASGELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
LP+ +G L +GTG+ + AG+AL+SL L G+P + A+I + L
Sbjct: 866 LPVDAGRL-LGTGLFLSAGTALVSL----LLGAPVLSSAIIEFDL 905
>gnl|CDD|206187 pfam14017, DUF4233, Protein of unknown function (DUF4233). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 122 and 147 amino
acids in length. Proteins in this family are integral
membrane proteins.
Length = 105
Score = 26.4 bits (59), Expect = 7.7
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 179 GELSMGTGIAICAGSALLSLALAFLSGSPAVLCAVIAWGL 218
T + G A+ L LA L P L + W L
Sbjct: 26 DGGLTTTNWGVGGGLAVALLLLAGLQRRPWGL--WLGWAL 63
>gnl|CDD|220700 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 438
Score = 27.3 bits (61), Expect = 8.1
Identities = 23/92 (25%), Positives = 29/92 (31%), Gaps = 28/92 (30%)
Query: 117 VSVTSVCFLPVQ-----SLSQVTPAFLLGVLKAVVAQIFMNISLCSLNQICDVEIDKINK 171
VS +L V L P F G + I N+ L
Sbjct: 128 VSAVYAVWLFVFIYFVGWLRAKNPKFAFGY---IFGIIAANVFLTY-------------G 171
Query: 172 PYLPL-ASGEL------SMGTGIAICAGSALL 196
P LP A G L MG G+A+ +LL
Sbjct: 172 PLLPTFAPGTLGLTLLKPMGLGLALNVVVSLL 203
>gnl|CDD|107192 PHA02508, PHA02508, putative minor coat protein; Provisional.
Length = 93
Score = 25.7 bits (56), Expect = 9.3
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 182 SMGTGIAICAG-----SALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSGLILYNII 236
S+G GI G A L A L+G PAV A++A A S+ ++ I
Sbjct: 23 SLGIGIFTYVGLDAAVDAALGAAKPMLAGLPAVAAAILAIAGVFEALSIIAGAILARASI 82
Query: 237 NLIK 240
K
Sbjct: 83 ISAK 86
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 27.0 bits (60), Expect = 10.0
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 172 PYLPLASGELSMGTGIAICA--GSALLSLALAFLSGSPAVLCAVIAWGLTGAAYSVPVSG 229
P+L L + S + + + G LLS + ++ A + A G + +
Sbjct: 147 PWLLLGYSQWSPSPLLQLASLGGVWLLSFLVVAVNALLASVLLKRATGGRLLLLGLLLVV 206
Query: 230 LILY 233
L+ Y
Sbjct: 207 LLAY 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.133 0.393
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,876,828
Number of extensions: 1083262
Number of successful extensions: 1258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 88
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)