BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026039
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG SMNPA +FG A + W+ ++YW+ P IGAV A ++ VF
Sbjct: 224 YTGASMNPARSFGPAVI---MGNWENHWIYWVGPIIGAVLAGALYEYVF 269
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG SMNPA +FG A + W+ ++YW+ P IGAV A ++ VF
Sbjct: 185 YTGASMNPARSFGPAVI---MGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG SMNPA +FG A + W+ ++YW+ P IGAV A ++ VF
Sbjct: 185 YTGASMNPARSFGPAVI---MGNWENHWIYWVGPIIGAVLAGALYEYVF 230
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG SMNPA +FG A + W+ ++YW+ P IGAV A ++ VF
Sbjct: 176 YTGASMNPARSFGPAVI---MGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 182 TGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
TG +NPA +FG A + + WD +++W+ PFIGA A+ + V
Sbjct: 217 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 182 TGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
TG +NPA +FG A + + WD +++W+ PFIGA A+ + V
Sbjct: 240 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 182 TGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
TG +NPA +FG A + + WD +++W+ PFIGA A+ + V
Sbjct: 240 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 287
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 182 TGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
TG +NPA +FG A + + WD +++W+ PFIGA A+ + V
Sbjct: 236 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 283
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 182 TGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
TG +NPA +FG A + + WD +++W+ PFIGA A+ + V
Sbjct: 217 TGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVL 264
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 181 YTGPSMNPANAFGWAYV-NKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG +NPA +FG + + + + D W ++W+ PFIGA A +I+ +
Sbjct: 188 YTGCGINPARSFGSSVITHNFQDHW----IFWVGPFIGAALAVLIYDFIL 233
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRVVF 229
YTG +NPA +FG A + + +++W+ PFIG A +I+ +
Sbjct: 186 YTGCGINPARSFGSAVITH---NFSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 178 GSAYTGPSMNPANAFGWAYV-NKWHDTWDQFYVYWICPFIGAVAASMIF 225
G +TG SMNPA +FG A V N++ +V+W+ P +GAV A++++
Sbjct: 177 GIYFTGCSMNPARSFGPAVVMNRFSPA---HWVFWVGPIVGAVLAAILY 222
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 182 TGPSMNPANAFGWAYVNKW----HDTWDQFYVYWICPFIGAVAASMIFR 226
+G S+NPA FG Y+N D W+ + +Y I P +GAV A++ ++
Sbjct: 194 SGSSLNPARTFG-PYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQ 241
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 178 GSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIF 225
G YTG MNPA +F A + + + +VYW+ P IGA S+++
Sbjct: 175 GMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLY 219
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 178 GSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIF 225
G YTG MNPA +F A + + + +VYW+ P IGA S+++
Sbjct: 175 GMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLY 219
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 178 GSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIF 225
G YTG MNPA +F A + + + +VYW+ P IGA S+++
Sbjct: 171 GMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLY 215
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 178 GSAYTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIF 225
G YTG MNPA +F A + + + +VYW+ P IGA S+++
Sbjct: 169 GMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLY 213
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 182 TGPSMNPANAFGWAYVNKWH--DTWDQFYVYWICPFIGAVAASMIFR 226
TG S+NPA FG + + W F +Y I P +GAVAA+ ++
Sbjct: 195 TGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 181 YTGPSMNPANAFGWAYVNKWHDTWDQFYVYWICPFIGAVAASMIFRV 227
YTG +NPA +FG A + + ++YW+ P +GA A I+++
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYH--WIYWLGPILGAFLAYSIWQM 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,658,567
Number of Sequences: 62578
Number of extensions: 172139
Number of successful extensions: 450
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 26
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)