BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026041
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens
GN=RABGGTB PE=1 SV=2
Length = 331
Score = 301 bits (770), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 131/222 (59%), Positives = 175/222 (78%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++++I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV Y+ GLQ EDGSF+GDI
Sbjct: 78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
+K V+Y+ ++K+ SF + + ++ + TL +LGKLDA++ E I ++L C +
Sbjct: 117 NKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
GGF G + H LA+ ++ +++D + ++ Q G +G
Sbjct: 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL 236
Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPG 172
D +S+ + L I+ RL I+ +K +I++C++ + GGF PG
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPG 283
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALF 94
++W L +L I+G+L +D E + ++IL CQDE +GGFA G +TL + L+L
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
Query: 95 DKVDILDADKV 105
+ I + V
Sbjct: 302 GEEQIKPVNPV 312
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus
GN=RABGGTB PE=2 SV=1
Length = 331
Score = 298 bits (764), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 174/222 (78%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++++I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV Y+ LQ EDGSF+GDI
Sbjct: 78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 1/167 (0%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
+K V+Y+ S++K+ SF + + ++ + TL +LGKLDA++ E I ++L C +
Sbjct: 117 NKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
GGF G + H LA+ ++ +++D + ++ Q G +G
Sbjct: 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL 236
Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPG 172
D +S+ + L I+ RL I+ +K +I++C++ + GGF PG
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPG 283
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGH--DP-HVLYTLSAVQVL 91
++W L +L I+G+L +D E + S+IL CQDE +GGFA G DP H L+ ++ + +L
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus
GN=Rabggtb PE=1 SV=2
Length = 339
Score = 297 bits (760), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 131/222 (59%), Positives = 172/222 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L ++ E+++ +I
Sbjct: 26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 86 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
+ DK V Y+ S++K+ SF + + ++ + TL +LGKLDA++ E I ++L
Sbjct: 122 INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLS 181
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
C + GGF G + H LA+ ++ +++D + ++ Q G +G
Sbjct: 182 CMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRP 241
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPG 172
D +S+ + L I+ RL I+ +K +I++C++ + GGF PG
Sbjct: 242 EKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPG 291
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGH--DP-HVLYTLSAVQVL 91
++W L +L I+G+L +D E + S+IL CQDE +GGFA G DP H L+ ++ + +L
Sbjct: 250 SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 309
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus
GN=Rabggtb PE=1 SV=1
Length = 331
Score = 296 bits (759), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH YI S KKD +E + E+LR++G YWGLT +D++G+L +++E+++ +I
Sbjct: 18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV Y+ LQ EDGSF+GDI
Sbjct: 78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGE+DTRFS+ A+ L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
G LAI LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 1/170 (0%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
+ DK V Y+ S++K+ SF + + ++ + TL +LGKLDA++ E I ++L
Sbjct: 114 INVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLS 173
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
C + GGF G + H LA+ ++ +++D + ++ Q G +G
Sbjct: 174 CMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRP 233
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPG 172
D +S+ + L I+ RL I+ +K +I++C++ + GGF PG
Sbjct: 234 EKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPG 283
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGH--DP-HVLYTLSAVQVL 91
++W L +L I+G+L +D E + S+IL CQDE +GGFA G DP H L+ ++ + +L
Sbjct: 242 SWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLL 301
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta
OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1
Length = 339
Score = 278 bits (711), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 136/222 (61%), Positives = 169/222 (76%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L DKHV+YI+ + KKDSFE V EH+R+NG YWGL++L +L LD +D+ +VI W+L
Sbjct: 22 LLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLS 81
Query: 64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
CQ +GGF GN HD H+L TLSAVQ+L +D +D +D + V +Y+V LQ EDGSF GD
Sbjct: 82 CQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGDQ 141
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
WGEVDTRFSY AI CLS+L+ LDKIN +KAVEYI+SC+N DGGFG PG ESH+GQIF C
Sbjct: 142 WGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTC 201
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
VGAL+I ++ +D D LGWWL ERQ+ +GGLNGRPEK DV
Sbjct: 202 VGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDV 243
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Query: 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
+ ++ +K V+YI+S + F S+ + + L IL +++ +D + + W
Sbjct: 163 LDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWW 222
Query: 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
+ + Q +GG G V Y+ + L+ D++ +D DK+ +YI+ Q+ +
Sbjct: 223 LSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGI 282
Query: 121 GDIWGEV-DTRFSYIAICCLSIL 142
D G++ D ++ IC LS++
Sbjct: 283 ADKPGDIPDVFHTFFGICGLSLM 305
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta
OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2
Length = 335
Score = 244 bits (623), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 154/223 (69%)
Query: 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
EL D H +I EK K+S+ ++ EHLR++G YW + +D+ +L+ + E++++++L
Sbjct: 23 ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVL 82
Query: 63 KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
C++ GG+ GHD H+L+TL AVQ L +F+ ++ DAD +S Y+ GLQ EDGSF GD
Sbjct: 83 GCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGD 142
Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
+ GEVDTRF+ ++ +L RL +N+D AV +++ C N DGGFG PG ESHSGQI+C
Sbjct: 143 LSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYC 202
Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
CVGALAIAG L +D+D WL RQ SGGLNGRPEKLPDV
Sbjct: 203 CVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 1/187 (0%)
Query: 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
AD +Y+ ++++ SF + + L T +LG+L ++ + + ++++C
Sbjct: 122 ADTISEYVKGLQQEDGSFCGDLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCY 181
Query: 66 DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG 125
+ GGF G + H V LA+ ++D +D D+ + ++ Q + G +G
Sbjct: 182 NTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEK 241
Query: 126 EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGESHSGQIFCCV 184
D +S+ + L+IL RL+ I+ D ++I +C++ + GGF PG + +
Sbjct: 242 LPDVCYSWWVLASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGI 301
Query: 185 GALAIAG 191
AL++ G
Sbjct: 302 AALSLFG 308
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ptb1 PE=3 SV=1
Length = 311
Score = 242 bits (617), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 152/224 (67%)
Query: 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
M L DKH+ Y+ + + D + + EHL ++ YW + +L K D +D+E ++S+
Sbjct: 1 MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSF 60
Query: 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
+L C ESGGFA GHD H+ T+ AVQVLA+ D + ++D DKV++YI+GLQNEDGS
Sbjct: 61 LLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMK 120
Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
GD WGE+D RF Y I CL+IL +LD +N + AV++++ C N DGGFG PG ESH +
Sbjct: 121 GDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMV 180
Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
F CV AL I L +D++LLGWW+ ERQVK GGLNGRPEKLPD
Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPD 224
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 1/163 (0%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
DK YII ++ + S + + Y G+ L ILGKLD +++ + W++KC +
Sbjct: 103 DKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYN 162
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
GGF G + H + V L + +K+D++D + + +I Q + G +G
Sbjct: 163 FDGGFGLCPGAESHGAMVFTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKL 222
Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFG 168
D+ + + + L+I+ +LD I+ ++ +++++ ++ D GGF
Sbjct: 223 PDSCYGWWDLSPLAIIGKLDWIDRNQLIDFLLGTQDADSGGFA 265
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 40 LTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI 99
+ L IL KLD +DEE + WI + Q + GG G P Y + LA+ K+D
Sbjct: 184 VAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPDSCYGWWDLSPLAIIGKLDW 243
Query: 100 LDADKVSNYIVGLQNED-GSFSGDIWGEVDTRFSYIAICCLSILQ 143
+D +++ ++++G Q+ D G F+ D + ++ LS+LQ
Sbjct: 244 IDRNQLIDFLLGTQDADSGGFADRKEDATDVYHTCFSLAGLSLLQ 288
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1
SV=3
Length = 325
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 7/229 (3%)
Query: 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
L +KH++YI S++ KK +FE + EHLRLNG YWGLT L +L + +E+VIS++L
Sbjct: 7 LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLS 66
Query: 64 CQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGSF 119
C D+ G FA HD H+L TLSAVQ+LA +D +D+L D+ + ++I G Q EDGSF
Sbjct: 67 CWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSF 126
Query: 120 SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQ 179
GD +GEVDTRF Y A+ LSIL L VD AV++++ C N DGGFG P ESH+ Q
Sbjct: 127 QGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQ 186
Query: 180 IFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLNGRPEKLPDV 225
F C+GALAIA L + D L GWWLCERQ+ GGLNGRP KLPDV
Sbjct: 187 AFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDV 235
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 88/195 (45%), Gaps = 7/195 (3%)
Query: 4 LAADKHVKYIISVEKKK---DSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
L D+ V+ I + + SF+ + Y L+ L ILG+L + + + +
Sbjct: 104 LGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDF 163
Query: 61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSN---YIVGLQNEDG 117
+LKC + GGF + H + + LA+ +K+D+L D++ ++ Q +G
Sbjct: 164 VLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEG 223
Query: 118 SFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGESH 176
+G D +S+ + L+I+ RLD IN +K E+I+ C++ GG P E
Sbjct: 224 GLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVD 283
Query: 177 SGQIFCCVGALAIAG 191
V L++ G
Sbjct: 284 VFHTVFGVAGLSLMG 298
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALF 94
++W L++L I+G+LD ++ E + +ILKCQDE GG + ++ V +T+ V L+L
Sbjct: 238 SWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLM 297
Query: 95 DKVDILDADKV 105
+++ D +
Sbjct: 298 GYDNLVPIDPI 308
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans
GN=BET2 PE=3 SV=1
Length = 341
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 18/235 (7%)
Query: 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QD 66
KHV+YI+ E + SFE + EHLR+NG YWG+T L + +L A+ ++DVI +I+ C D
Sbjct: 17 KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDD 75
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDIL-DADKVSN---------YIVGLQNE 115
++G F HD H+L TLSA+QVL ++D+ + +L D ++ SN +I GLQ
Sbjct: 76 KTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLP 135
Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
DGSF GD +GEVDTRF Y A+ LS+L L D A +I+ C N DGGFG PG ES
Sbjct: 136 DGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSES 195
Query: 176 HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQV-KSGGLNGRPEKLPDV 225
H+ Q+F CVGALAI L +D K L WL ERQV SGG NGRPEKLPDV
Sbjct: 196 HAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDV 250
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
++ +K+I ++ SF+ + Y +++L +L L + ++I++C +
Sbjct: 123 ERLIKFITGLQLPDGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFN 182
Query: 67 ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE-----DGSFSG 121
GGF G + H + V LA+ +K+D+LD + ++ E G F+G
Sbjct: 183 FDGGFGLIPGSESHAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNG 242
Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGES 175
D +S+ + LSIL+R + +++ +I++C++L+ GGF PG ++
Sbjct: 243 RPEKLPDVCYSWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQT 297
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 36 AYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLALF 94
++W L++L IL + + VD + + ++IL CQD E+GGF+ G+ V +T A+ L+L
Sbjct: 253 SWWVLSSLSILKRKNWVDLKILENFILTCQDLENGGFSDRPGNQTDVYHTCFAIAGLSLI 312
Query: 95 D 95
D
Sbjct: 313 D 313
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1
Length = 382
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 8 KHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
KH+KY+ K D S V++ R YW L++L ILGKLD+ E IS + + +
Sbjct: 33 KHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQLK 89
Query: 66 DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNEDGSFSGD 122
SGGF G G D H+L T +++ + L D D +++ D++ +++ L+N DGSF +
Sbjct: 90 GPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVN 149
Query: 123 IWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181
GE D R Y A+C S++ +D + ++++ C+ +GG P E+H G F
Sbjct: 150 NEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTF 209
Query: 182 CCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPD 224
C + A+A+ G L ++++ L WL +RQ + G +GR KL D
Sbjct: 210 CALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVD 253
>sp|Q04903|FNTB_PEA Protein farnesyltransferase subunit beta OS=Pisum sativum GN=FTB
PE=2 SV=1
Length = 419
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 102/192 (53%), Gaps = 4/192 (2%)
Query: 37 YWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF- 94
YW + ++ +LG+ +D E++ + ++ +CQD +GG+AG G PH+ T +AV L
Sbjct: 50 YWIIHSIALLGESIDDDLEDNTVDFLNRCQDPNGGYAGGPGQMPHLATTYAAVNTLITLG 109
Query: 95 --DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
+ ++ +K+ ++ ++ +G F GE+D R Y AI S+L LD +
Sbjct: 110 GEKSLASINRNKLYGFMRRMKQPNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKN 169
Query: 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS 212
++I+SC+ +GG PG E+H G FC + A+ + G ++ +D L W+ RQ K
Sbjct: 170 VGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMILIGEVNRLDLPRLLDWVVFRQGKE 229
Query: 213 GGLNGRPEKLPD 224
G GR KL D
Sbjct: 230 CGFQGRTNKLVD 241
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA 92
+ Y ++ +L LD ++V +IL CQ GG AG G + H YT + +
Sbjct: 146 VRACYTAISVASVLNILDDELIKNVGDFILSCQTYEGGLAGEPGSEAHGGYTFCGLAAMI 205
Query: 93 LFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
L +V+ LD ++ +++V Q ++ F G VD +S+ +++LQRL I ++
Sbjct: 206 LIGEVNRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLHSIIDEQ 265
Query: 153 AVE--YIVSCKNLDGGFGCTPGGESHS 177
E V+ + C G SH+
Sbjct: 266 MAEASQFVTVSDAPEEKECLDGTSSHA 292
>sp|Q55D51|FNTB_DICDI Protein farnesyltransferase subunit beta OS=Dictyostelium
discoideum GN=fntB PE=3 SV=1
Length = 500
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 3/153 (1%)
Query: 76 GHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS 132
H HV+ T +AV L + + +D + + +++ ++ ++G+F+ + GE D+R +
Sbjct: 143 SHTSHVVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTSEDGGEYDSRTT 202
Query: 133 YIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGA 192
Y AI S+L L V++++SC+ +GGFG P E+H G FC V AL+I +
Sbjct: 203 YCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSILNS 262
Query: 193 LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
LH +D + L W+ RQ GG GR KL D
Sbjct: 263 LHKIDMNSLHRWITYRQSNDGGFEGRTNKLVDT 295
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%)
Query: 11 KYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGG 70
K+++ ++ K+ +F S Y + +L L A E V+ ++L CQ GG
Sbjct: 177 KFLMRMKTKEGAFTSEDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGG 236
Query: 71 FAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
F ++ H YT +V L++ + + +D + + +I Q+ DG F G VDT
Sbjct: 237 FGAYPFNEAHGGYTFCSVAALSILNSLHKIDMNSLHRWITYRQSNDGGFEGRTNKLVDTC 296
Query: 131 FSYIAICCLSILQ 143
+SY I+Q
Sbjct: 297 YSYWQGAVYIIIQ 309
>sp|P49356|FNTB_HUMAN Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB
PE=1 SV=1
Length = 437
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + DI++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
FC + AL I ++ L W+ RQ++ GG GR KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297
>sp|Q8K2I1|FNTB_MOUSE Protein farnesyltransferase subunit beta OS=Mus musculus GN=Fntb
PE=1 SV=1
Length = 437
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
FC + AL I ++ L W+ RQ++ GG GR KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297
>sp|Q02293|FNTB_RAT Protein farnesyltransferase subunit beta OS=Rattus norvegicus
GN=Fntb PE=1 SV=1
Length = 437
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + ++++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F + GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
FC + AL I ++ L W+ RQ++ GG GR KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297
>sp|P49355|FNTB_BOVIN Protein farnesyltransferase subunit beta OS=Bos taurus GN=FNTB PE=2
SV=1
Length = 437
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 8/227 (3%)
Query: 4 LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
L +KH Y+ + + D++E ++ R YW L +L++L + + + DV ++
Sbjct: 73 LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQMVATDVCQFL 130
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
CQ GGF G G PH+ T +AV L + + D+++ +K+ Y+ L+ DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
F GEVD R +Y A S+ + + E+I C+N +GG G PG E+H G
Sbjct: 191 FLMHDGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
FC + AL I ++ L W+ RQ++ GG GR KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297
>sp|Q38920|FNTB_ARATH Protein farnesyltransferase subunit beta OS=Arabidopsis thaliana
GN=FTB PE=1 SV=3
Length = 482
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 7/229 (3%)
Query: 1 MGELAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVI 58
M E+ DK + Y++ + + F S+ L YW L ++ +LG+ +D E + I
Sbjct: 78 MMEIQRDKQLDYLMKGLRQLGPQFSSLDANRPWL--CYWILHSIALLGETVDDELESNAI 135
Query: 59 SWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF--DK-VDILDADKVSNYIVGLQNE 115
++ +CQ GG+ G G PH+ T +AV L DK + ++ +K+S ++ +++
Sbjct: 136 DFLGRCQGSEGGYGGGPGQLPHLATTYAAVNALVTLGGDKALSSINREKMSCFLRRMKDT 195
Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
G F GE+D R Y AI SIL +D +YI+SC+ +GG G PG E+
Sbjct: 196 SGGFRMHDMGEMDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIGGEPGSEA 255
Query: 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
H G +C + A+ + + ++ D L W RQ G GR KL D
Sbjct: 256 HGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVD 304
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
Query: 16 VEKKKDS---FESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFA 72
+ + KD+ F M + + Y ++ IL +D + + +IL CQ GG
Sbjct: 189 LRRMKDTSGGFRMHDMGEMDVRACYTAISVASILNIMDDELTQGLGDYILSCQTYEGGIG 248
Query: 73 GNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS 132
G G + H YT + + L ++VD L+ D + N+ V Q + F G VD ++
Sbjct: 249 GEPGSEAHGGYTYCGLAAMILINEVDRLNLDSLMNWAVHRQGVEMGFQGRTNKLVDGCYT 308
Query: 133 YIAICCLSILQRLDKIN 149
+ +LQRL N
Sbjct: 309 FWQAAPCVLLQRLYSTN 325
>sp|P53610|PGTB1_RAT Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus
GN=Pggt1b PE=1 SV=1
Length = 377
Score = 88.2 bits (217), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
+D + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
G +GRP K D
Sbjct: 259 GYHGRPNKPVDT 270
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 45 ILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK 104
+L +D + IS+I + G A G + H T + L L K++ + ++K
Sbjct: 184 MLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK 243
Query: 105 VSNYIVG--LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
N I + + + G VDT +S+ L +L+ N +K YI+S ++
Sbjct: 244 ELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303
Query: 163 -LDGGFGCTP 171
L GGF P
Sbjct: 304 RLVGGFAKWP 313
>sp|Q8BUY9|PGTB1_MOUSE Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus
GN=Pggt1b PE=2 SV=1
Length = 377
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILGDDLG 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
+D + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
G +GRP K D
Sbjct: 259 GYHGRPNKPVDT 270
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 45 ILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK 104
+L +D + IS+I + G A G + H T + L L K++ + ++K
Sbjct: 184 MLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK 243
Query: 105 VSNYIVG--LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
N I + + + G VDT +S+ L +L+ N +K YI+S ++
Sbjct: 244 ELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303
Query: 163 -LDGGFGCTP 171
L GGF P
Sbjct: 304 RLVGGFAKWP 313
>sp|Q5EAD5|PGTB1_BOVIN Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus
GN=PGGT1B PE=2 SV=1
Length = 377
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 37/252 (14%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G N +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
++ + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
G +GRP K D
Sbjct: 259 GYHGRPNKPVDT 270
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 45 ILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK 104
+L +D + I++I + G A G + H T + L L K++ + ++K
Sbjct: 184 MLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK 243
Query: 105 VSNYIVG--LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
N I + + + G VDT +S+ L +L+ N +K YI+S ++
Sbjct: 244 ELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303
Query: 163 -LDGGFGCTP 171
L GGF P
Sbjct: 304 RLVGGFAKWP 313
>sp|P53609|PGTB1_HUMAN Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens
GN=PGGT1B PE=1 SV=2
Length = 377
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 116/252 (46%), Gaps = 37/252 (14%)
Query: 7 DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
D+HV++ ++ + + S +E RL A++ L+ LD+L LD V+++D+I WI
Sbjct: 23 DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62 -LKCQDESG----GFAGN----IGHDP-------------HVLYTLSAVQVLALF-DKVD 98
L +D S GF G+ I +P H+ T + + L + D +
Sbjct: 81 VLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLS 140
Query: 99 ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
++ + + LQ EDGSF G E D RF Y A C +L +++ KA+ YI
Sbjct: 141 RVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
+ D G G ESH G FC + +L + G L V +K+L + W RQ
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDV 225
G +GRP K D
Sbjct: 259 GYHGRPNKPVDT 270
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 45 ILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK 104
+L +D + I++I + G A G + H T + L L K++ + ++K
Sbjct: 184 MLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEK 243
Query: 105 VSNYIVG--LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
N I + + + G VDT +S+ L +L+ N +K YI+S ++
Sbjct: 244 ELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303
Query: 163 -LDGGFGCTP 171
L GGF P
Sbjct: 304 RLVGGFAKWP 313
>sp|P22007|FNTB_YEAST Protein farnesyltransferase subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAM1 PE=1
SV=2
Length = 431
Score = 73.9 bits (180), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 80 HVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW-GEVDTRFSYI 134
H+ T +A+ L+L D +D +D + +++ L+ +G F + GEVDTR Y
Sbjct: 156 HLASTYAAINALSLCDNIDGCWDRIDRKGIYQWLISLKEPNGGFKTCLEVGEVDTRGIYC 215
Query: 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGAL 193
A+ ++L L + + + Y+ +C+N +GGFG P E+H G FC +LAI ++
Sbjct: 216 ALSIATLLNILTEELTEGVLNYLKNCQNYEGGFGSCPHVDEAHGGYTFCATASLAILRSM 275
Query: 194 HHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
++ + L W RQ++ G GR KL D
Sbjct: 276 DQINVEKLLEWSSARQLQEERGFCGRSNKLVD 307
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 11 KYIISVEKKKDSFESVV-MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
+++IS+++ F++ + + + G Y L+ +L L E V++++ CQ+ G
Sbjct: 187 QWLISLKEPNGGFKTCLEVGEVDTRGIYCALSIATLLNILTEELTEGVLNYLKNCQNYEG 246
Query: 70 GFAGNIGH--DPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWGE 126
GF G+ H + H YT A LA+ +D ++ +K+ + Q E+ F G
Sbjct: 247 GF-GSCPHVDEAHGGYTFCATASLAILRSMDQINVEKLLEWSSARQLQEERGFCGRSNKL 305
Query: 127 VDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSC--KNLDGGFGCTPGGESHSGQIF 181
VD +S+ +IL+ N +YI+ C + G PG S
Sbjct: 306 VDGCYSFWVGGSAAILEAFGYGQCFNKHALRDYILYCCQEKEQPGLRDKPGAHSDFYHTN 365
Query: 182 CCVGALAIA 190
C+ LA+A
Sbjct: 366 YCLLGLAVA 374
>sp|Q55DA3|PGTB1_DICDI Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium
discoideum GN=pggt1b PE=2 SV=1
Length = 352
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 23 FESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DVISW-----ILKCQD------ESG 69
+ S + HL L ++ ++ LD+L K D +++E D+I+W IL +D E+
Sbjct: 25 YTSGLPNHLSL--IFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINLENC 82
Query: 70 GFAGN--IGHD-------------------PHVLYTLSAVQVLALF-DKVDILDADKVSN 107
GF G +G + P T A+ +L + D ++ + +
Sbjct: 83 GFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGDDFSGVNKKAIID 142
Query: 108 YIVGLQNE-DGSFSGDI-WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDG 165
+ Q E DG+ SG G+ D R + A IL IN + A++YI SC + +
Sbjct: 143 SLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEF 202
Query: 166 GFGCTPGGESHSGQIFCCVGALAIAGALHHVD--KDLLGWWLCERQVKSGGLNGRPEKLP 223
FG TP E+H G +C + +L++ G L ++ K+ L +WL ++Q+ G GR K P
Sbjct: 203 AFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPFKEQLTFWLVKKQIT--GFCGRTNKDP 260
Query: 224 DV 225
D
Sbjct: 261 DT 262
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 10 VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDE 67
+ YI S + +F + Y + +L +LG+LD ++ +E + W++K Q
Sbjct: 191 IDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPFKEQLTFWLVKKQ-- 248
Query: 68 SGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNED-GSFSGDIWGE 126
GF G DP Y L + D+ D++D ++ +I Q+E G + +
Sbjct: 249 ITGFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHEAIGGVAKEPGQL 308
Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL 163
D SY+++ LS N+ +++ ++ C NL
Sbjct: 309 PDVMHSYLSLVGLSF------GNI-PSIQQVIPCLNL 338
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 6/195 (3%)
Query: 36 AYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGF---AGNIGHDPHVLYTLSAVQVL 91
Y L L ILG V+++ +I + K Q ES G + N+G D + + SA +
Sbjct: 118 TYCALLILRILGDDFSGVNKKAIIDSLRKRQRESDGAISGSPNVG-DYDLRHLFSACAIS 176
Query: 92 ALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151
+ D ++ + +YI + + +F E +Y AI LS+L RLD +
Sbjct: 177 FILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLDVLEPF 236
Query: 152 KAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK 211
K K GF + + F +L + +D + ++ Q +
Sbjct: 237 KEQLTFWLVKKQITGFCGRTNKDPDTCYAFWIGASLMMIDRYDLIDFASINAFIGSAQHE 296
Query: 212 S-GGLNGRPEKLPDV 225
+ GG+ P +LPDV
Sbjct: 297 AIGGVAKEPGQLPDV 311
>sp|P32434|PGTB1_SCHPO Geranylgeranyl transferase type-1 subunit beta
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cwg2 PE=3 SV=1
Length = 355
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 21/152 (13%)
Query: 90 VLALFDKVDILDADKVSNYIVGLQNEDGSFSG---DIWGEVDTRFSYIAICCLSILQRLD 146
+L L D + +D D + N++ + G F + D R Y+A S+L
Sbjct: 107 LLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLLD-FS 165
Query: 147 KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA------GALHHVDK-- 198
+ +++YI SC+ +GGF P GE+H+G FC + + ++ +L+ ++
Sbjct: 166 LSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSY 225
Query: 199 ---------DLLGWWLCERQVKSGGLNGRPEK 221
+ L WL RQ+ SGGLNGR K
Sbjct: 226 NLMDCVPKVERLIRWLASRQLSSGGLNGRTNK 257
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 55 EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNY-IVGLQ 113
E +I W+ Q SGG G D Y + L L D + +D ++ Y ++ Q
Sbjct: 235 ERLIRWLASRQLSSGGLNGRTNKDVDTCYAYWVLSSLKLLDALPFIDGGELEKYLLLHAQ 294
Query: 114 NEDGSFSGDIWGEVDTRFSYIAICCLSIL--QRLDKINVD--KAVEYIVSCKN 162
+ G FS D S + + ++ + K+N D +YI C++
Sbjct: 295 HALGGFSKTPGEFPDVLHSALGLYAMAYQDDKSFPKVNADIHMTSKYINICRD 347
>sp|P18898|PGTB1_YEAST Geranylgeranyl transferase type-1 subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC43 PE=1
SV=2
Length = 376
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 79/201 (39%), Gaps = 46/201 (22%)
Query: 69 GGFAGNIGHD-----PHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNED-GSF-- 119
G NI H P+ L+ L ++ +L ++ + ILD ++ ++ Q D GSF
Sbjct: 89 GSLVMNIPHATTINLPNTLFALLSMIMLRDYEYFETILDKRSLARFVSKCQRPDRGSFVS 148
Query: 120 -------SGDIWGEVDTRFSYIAICCLSILQRLDK------INVDKAVEYIVSCKNLDGG 166
G D RF YIA+ L I K I+ +K + YI+S + +G
Sbjct: 149 CLDYKTNCGSSVDSDDLRFCYIAVAILYICGCRSKEDFDEYIDTEKLLGYIMSQQCYNGA 208
Query: 167 FGCTPGGESHSGQIFCCVGALAIAGALHHVD---KDLLGWWLCERQVKS----------- 212
FG E HSG C + LA+ +L + K+ WL RQV S
Sbjct: 209 FG--AHNEPHSGYTSCALSTLALLSSLEKLSDKFKEDTITWLLHRQVSSHGCMKFESELN 266
Query: 213 --------GGLNGRPEKLPDV 225
GG GR K D
Sbjct: 267 ASYDQSDDGGFQGRENKFADT 287
>sp|P33247|SQHC_ALIAD Squalene--hopene cyclase OS=Alicyclobacillus acidocaldarius subsp.
acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A)
GN=shc PE=1 SV=4
Length = 631
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162
D+ Y++ Q ++G + G + V Y+ +C IL R+D+ ++K Y++ +
Sbjct: 16 DRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLC--HILDRVDRDRMEKIRRYLLHEQR 73
Query: 163 LDGGFGCTPGGES 175
DG + PGG
Sbjct: 74 EDGTWALYPGGPP 86
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 57 VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA--LFDKVDILDADKVSNYIVGLQN 114
+ ++L CQ + G + G + + T+ A VL + D+VD +K+ Y++ Q
Sbjct: 18 AVEYLLSCQKDEGYWWGPLLSN----VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQR 73
Query: 115 EDGSFSGDIWGEVD---TRFSYIAICCLSILQRLDKINVDKAVEYIVS 159
EDG+++ G D T +Y+A+ + + + D+ + KA+ +I S
Sbjct: 74 EDGTWALYPGGPPDLDTTIEAYVALKYIGMSR--DEEPMQKALRFIQS 119
>sp|E7DN64|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1
Length = 763
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 35/158 (22%)
Query: 44 DILGK-LDAVDEEDVISWILKCQDESGGFAG----------------------NIGHDPH 80
+I+G+ +D V D ++ IL Q ++GG + I H+ H
Sbjct: 502 EIVGEAMDPVRLYDSVNVILSLQSKNGGLSAWEPAGAPEYLELLNPTEFFEDIVIEHE-H 560
Query: 81 VLYTLSAVQVLALFDKV----DILDADKVSN----YIVGLQNEDGSFSGDIWGEVDTRFS 132
V T SA+Q L F K+ + D N YI +Q DGS+ G+ WG S
Sbjct: 561 VECTSSAIQALVRFKKLYPGHRTTEVDNFINNGVKYIEDVQEPDGSWYGN-WGVCFIYAS 619
Query: 133 YIAICCLSI--LQRLDKINVDKAVEYIVSCKNLDGGFG 168
+ A+ L+ L + V K+VE+++ + DGG+G
Sbjct: 620 WFALGGLAAVGLSYSNCAAVRKSVEFLLRTQRSDGGWG 657
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1
Length = 765
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK-V 105
G L A + W L+ + + FA + +V T SA+Q L LF K+ K +
Sbjct: 529 GGLSAWEPAGAQEW-LELLNPTEFFADIVVEHEYVECTGSAIQALVLFKKLYPGHRKKEI 587
Query: 106 SNYIVG-------LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEY 156
N+I Q DGS+ G+ WG T S+ A+ L+ + + + KAV++
Sbjct: 588 ENFIANAVRFLEDTQTADGSWYGN-WGVCFTYGSWFALGGLAAAGKTFANCAAIRKAVKF 646
Query: 157 IVSCKNLDGGFG 168
+++ + DGG+G
Sbjct: 647 LLTTQREDGGWG 658
>sp|F8WQD0|SHS1_ASTTA Shionone synthase OS=Aster tataricus GN=SHS1 PE=1 SV=1
Length = 761
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 34/153 (22%)
Query: 48 KLDAVDEEDVISWILKCQDESGGFAG----------------------NIGHDPHVLYTL 85
K+D +D ++ IL Q E+GG A I H+ +V T
Sbjct: 507 KMDPEQLKDAVNVILSLQSENGGLAAWEPAGSSNWLEMLNPIEFIEDIVIEHE-YVECTG 565
Query: 86 SAVQVLALFDKVDILDADK--------VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAIC 137
+ ++ L LF K+ K + Y+ Q DGS+ G+ WG T +Y A+
Sbjct: 566 TGMEALVLFKKLYPKHRTKEVESFLTNAARYLDNTQMPDGSWYGE-WGICFTYGTYYALG 624
Query: 138 CLSILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
L+ +++ + ++ KAV +++ + DGG+G
Sbjct: 625 GLAAIEKTYENCQSIRKAVRFLLKTQGEDGGWG 657
>sp|H2KWF1|PAKSY_ORYSJ Parkeol synthase OS=Oryza sativa subsp. japonica GN=Os11g0189600
PE=1 SV=1
Length = 759
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 79 PHVLYTLSAVQVLALFDKVDILDA--------DKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
P+V T S++Q LALF K+ K +N+I Q DGS+ G WG T
Sbjct: 558 PYVECTSSSIQCLALFKKLHPGHRKEEVENCISKGANFIESSQRSDGSWYGS-WGICFTY 616
Query: 131 FSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
++ A+ L R + V KA ++++S + GG+G
Sbjct: 617 ATWFAVTGLVSAGRTLGNSATVRKACDFLLSKQLPSGGWG 656
>sp|P33990|SQHC_ZYMMO Squalene--hopene cyclase OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=shc PE=3 SV=2
Length = 658
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDG 165
+Y++ Q EDGS+ G WG ++ A+C L++ D + + KAV ++ + +N DG
Sbjct: 491 DYLLKEQEEDGSWFGR-WGVNYIYGTWSALCALNVAALPHDHLAIQKAVAWLKTIQNEDG 549
Query: 166 GFG 168
G+G
Sbjct: 550 GWG 552
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1
Length = 763
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---------V 97
G L A + W L+ + + FA + +V T SA+Q L LF K +
Sbjct: 530 GGLSAWEPAGAQEW-LELLNPTEFFADIVIEHEYVECTSSAIQALVLFKKLYPGHRKKEI 588
Query: 98 DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR--LDKINVDKAVE 155
D + V Y+ Q DGS+ G+ WG T S+ A+ L+ + + V KAVE
Sbjct: 589 DNFITNAV-RYLEDTQMPDGSWYGN-WGVCFTYGSWFALGGLAAAGKTYYNCAAVRKAVE 646
Query: 156 YIVSCKNLDGGFG 168
+++ + DGG+G
Sbjct: 647 FLLKSQMDDGGWG 659
>sp|Q8W3Z4|CAS1_BETPL Cycloartenol synthase OS=Betula platyphylla GN=CASBPX1 PE=1 SV=1
Length = 767
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 32/144 (22%)
Query: 56 DVISWILKCQDESGGFA--------------------GNIGHD-PHVLYTLSAVQVLALF 94
D + IL Q+ GGFA G+I D P+V T +A+Q L LF
Sbjct: 524 DAVHVILSLQNTDGGFATYELTRSYHWLELINPAETFGDIVIDYPYVECTSAAIQALTLF 583
Query: 95 DKV-------DILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146
K+ +I + K + +I +Q DGS+ G WG T + I L R
Sbjct: 584 KKLHPGHRREEIENCIAKAAEFIENIQASDGSWYGS-WGVCFTYAGWFGIKGLVAAGRTY 642
Query: 147 K--INVDKAVEYIVSCKNLDGGFG 168
K ++ KA +Y++S + GG+G
Sbjct: 643 KNCSSIHKACDYLLSKELASGGWG 666
>sp|E7DN63|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1
Length = 761
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 62 LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---------VDILDADKVSNYIVGL 112
L+ + + FA + +V T S++Q L LF K ++I D Y+ +
Sbjct: 542 LELLNPTEFFADIVIEHEYVECTASSIQALVLFKKLYPGHRTKEINIF-IDNAVKYLEDV 600
Query: 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
Q DGS+ G+ WG T S+ A+ L + + V K VE+++ + DGG+G
Sbjct: 601 QMPDGSWYGN-WGVCFTYGSWFALGGLVAAGKSYNNSAAVRKGVEFLLRTQRSDGGWG 657
>sp|Q764T8|LUPS_GLYGL Lupeol synthase OS=Glycyrrhiza glabra GN=LUS1 PE=1 SV=1
Length = 758
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 47 GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---------V 97
G A + + W+ K + + F + +V T SA+Q LALF K +
Sbjct: 526 GGFPAWEPQKAYRWLEKF-NPTEFFEDTMIEREYVECTGSAMQGLALFRKQFPQHRSKEI 584
Query: 98 DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR--LDKINVDKAVE 155
D A K YI +QN DGS+ G WG T ++ A+ L+ + + +++ KA +
Sbjct: 585 DRCIA-KAIRYIENMQNPDGSWYG-CWGICYTYGTWFAVEGLTACGKNCHNSLSLRKACQ 642
Query: 156 YIVSCKNLDGGFG 168
+++S + + G+G
Sbjct: 643 FLLSKQLPNAGWG 655
>sp|O82139|CAS1_PANGI Cycloartenol Synthase OS=Panax ginseng GN=OSCPNX1 PE=1 SV=1
Length = 758
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)
Query: 49 LDAVDEEDVISWILKCQDESGGFA--------------------GNIGHD-PHVLYTLSA 87
LDA D ++ IL Q+ GG+A G+I D P+V T +A
Sbjct: 507 LDAKRLYDAVNVILSLQNSDGGYATYELTRSYSWLELVNPAETFGDIVIDYPYVECTSAA 566
Query: 88 VQVLALFDKV-------DILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL 139
+Q L F K+ +I + +K + +I +Q+ DGS+ G WG T ++ I L
Sbjct: 567 IQALTAFKKLFPGHRREEIQHSIEKAALFIEKIQSSDGSWYGS-WGVCFTYGTWFGIKGL 625
Query: 140 SILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
R ++ KA ++++S + GG+G
Sbjct: 626 VTAGRTFSSCASIRKACDFLLSKQVASGGWG 656
>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1
Length = 764
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 84 TLSAVQVLALFDKVDILDADK-VSNYIVGL-------QNEDGSFSGDIWGEVDTRFSYIA 135
T SA+Q L LF K+ K V N+I Q DGS+ G+ WG T S+ A
Sbjct: 565 TSSAIQALVLFKKLYPEHRKKEVENFIANAVRFLEYKQTSDGSWYGN-WGICFTYGSWFA 623
Query: 136 ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESH 176
+ L + + + K VE++++ + DGG+ GESH
Sbjct: 624 LNGLVAAGKTYDNCAAIRKGVEFLLTTQREDGGW-----GESH 661
>sp|Q9SXV6|CAS1_GLYGL Cycloartenol synthase OS=Glycyrrhiza glabra GN=GgCAS1 PE=1 SV=1
Length = 757
Score = 34.3 bits (77), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 44 DILGK-LDAVDEEDVISWILKCQDESGGFA--------------------GNIGHD-PHV 81
+I+G+ LDA D ++ IL Q+E GGFA G+I D P+V
Sbjct: 501 EIVGEPLDAKRLYDAVNVILSLQNEDGGFATYELTRSYTWLELINPAETFGDIVIDYPYV 560
Query: 82 LYTLSAVQVLALFDKVDILDA--------DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133
T +A+Q L F K+ +K +++I Q DGS+ G WG T ++
Sbjct: 561 ECTSAAIQALTSFKKLYPGHRREEIQCCIEKAASFIEKTQASDGSWYGS-WGVCFTYGTW 619
Query: 134 IAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
+ L + + ++ KA E+++S + GG+G
Sbjct: 620 FGVKGLIAAGKSFNNCSSIRKACEFLLSKQLPSGGWG 656
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1
Length = 759
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 26 VVMEHLRLNGAYWGLTTLDIL----GKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81
+V EH+ Y + L L G L A + W L+ + + FA + +V
Sbjct: 504 IVGEHMEPERLYDSVNVLLSLQSKNGGLSAWEPAGAQDW-LELLNPTEFFADIVIEHEYV 562
Query: 82 LYTLSAVQVLALFDKV-------DILD-ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY 133
T SA+ L LF K+ +I D K ++ +Q DG++ G+ WG T ++
Sbjct: 563 ERTSSAIHALVLFKKLYPGHRKKEIEDFIAKSVRFLESIQTSDGTWYGN-WGVCFTYGTW 621
Query: 134 IAICCLSILQRLDK--INVDKAVEYIVSCKNLDGGFG 168
A+ L+ + + + KAV++++ + DGG+G
Sbjct: 622 FALGGLAAAGKTYNSCLAMRKAVDFLLRIQKDDGGWG 658
>sp|O82146|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1
Length = 761
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 84 TLSAVQVLALFDKVDILDADK-----VSN---YIVGLQNEDGSFSGDIWGEVDTRFSYIA 135
T SA+Q + +F K+ K ++N Y+ +Q DGS+ G+ WG T ++ A
Sbjct: 564 TSSAIQAMVMFKKLYPGHRKKEIEVSITNAVQYLEDIQMPDGSWYGN-WGVCFTYGTWFA 622
Query: 136 ICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFG 168
+ L+ + + + KAV++++ + DGG+G
Sbjct: 623 MGGLTAAGKTYNNCQTLHKAVDFLIKSQRSDGGWG 657
>sp|Q04C22|RPOB_LACDB DNA-directed RNA polymerase subunit beta OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC BAA-365)
GN=rpoB PE=3 SV=2
Length = 1221
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ NEDGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNEDGSFVDDV 597
>sp|Q1GBM5|RPOB_LACDA DNA-directed RNA polymerase subunit beta OS=Lactobacillus
delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
20081) GN=rpoB PE=3 SV=1
Length = 1221
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ NEDGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNEDGSFVDDV 597
>sp|A8YXJ8|RPOB_LACH4 DNA-directed RNA polymerase subunit beta OS=Lactobacillus
helveticus (strain DPC 4571) GN=rpoB PE=3 SV=1
Length = 1213
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ N+DGSF D+
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNDDGSFKSDV 597
>sp|Q5FM97|RPOB_LACAC DNA-directed RNA polymerase subunit beta OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=rpoB PE=3 SV=1
Length = 1213
Score = 31.6 bits (70), Expect = 4.7, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NYI+ N+DGSF DI
Sbjct: 565 DKIDYLTADEEDNYIIAGANTPLNDDGSFKEDI 597
>sp|Q6Z2X6|CAS_ORYSJ Cycloartenol synthase OS=Oryza sativa subsp. japonica
GN=Os02g0139700 PE=1 SV=1
Length = 759
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 79 PHVLYTLSAVQVLALFDKV------DILDA--DKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
P+V T +A+Q L F K+ +D K +++I G+Q DGS+ G W T
Sbjct: 559 PYVECTSAAIQALTAFKKLYPGHRKSEIDNCISKAASFIEGIQKSDGSWYGS-WAVCFTY 617
Query: 131 FSYIAICCLSILQRLDKIN--VDKAVEYIVSCKNLDGGFG 168
++ + L R K + + KA ++++S + GG+G
Sbjct: 618 GTWFGVKGLVAAGRTFKNSPAIRKACDFLLSKELPSGGWG 657
>sp|Q03PU9|RPOB_LACBA DNA-directed RNA polymerase subunit beta OS=Lactobacillus brevis
(strain ATCC 367 / JCM 1170) GN=rpoB PE=3 SV=1
Length = 1203
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGD 122
DK+D L AD+ NY+V N+DGSF+ D
Sbjct: 564 DKIDYLTADEEDNYVVAQANTPLNDDGSFNTD 595
>sp|Q948R6|IMFS_LUFCY Isomultiflorenol synthase OS=Luffa cylindrica GN=IMS1 PE=1 SV=1
Length = 759
Score = 31.2 bits (69), Expect = 7.8, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIA--ICCLSILQRLDKI----NVDKAVEYIVS 159
++++ +Q DG + + G + Y+ + C+ I+ +DK+ + + + YI +
Sbjct: 102 AHFLAAIQASDGHWPSETSGPL----FYVCPLLICMYIMGFMDKVFSPEHKKEMMRYIYN 157
Query: 160 CKNLDGGFGCTPGGESHSGQIFC 182
+N DGG+G GG S+ +FC
Sbjct: 158 HQNEDGGWGLHVGGHSN---MFC 177
>sp|Q1WVA5|RPOB_LACS1 DNA-directed RNA polymerase subunit beta OS=Lactobacillus
salivarius (strain UCC118) GN=rpoB PE=3 SV=1
Length = 1199
Score = 30.8 bits (68), Expect = 8.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 95 DKVDILDADKVSNYIVGLQ----NEDGSFSGDI 123
DK+D L AD+ NY++ N+DGSF D+
Sbjct: 568 DKIDYLTADEEDNYVIAQANSPLNDDGSFVDDV 600
>sp|Q07381|TSR1_YEAST Ribosome biogenesis protein TSR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TSR1 PE=1 SV=1
Length = 788
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 16/131 (12%)
Query: 34 NGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQ 89
NGA +T + ++ LD +D ++ +LKC D+ G + + H+ S ++
Sbjct: 80 NGAAKIITIVPLVNDLDPLD---ILYKLLKCADDEGIMVQEVDSKRIFNVHIKKFKSNLK 136
Query: 90 VLA--LFDKVDILDADKVSNYIV----GLQNEDGSFSGDIWGEVDTR--FSYI-AICCLS 140
++ + + ++ILD KV++++V G+Q D F I ++ + SYI I LS
Sbjct: 137 IIIPDMTNFLNILDCAKVADFVVFGLSGVQEVDEEFGEQIIRALELQGIASYIGVISNLS 196
Query: 141 ILQRLDKINVD 151
+ +K +D
Sbjct: 197 AVHEKEKFQLD 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,429,023
Number of Sequences: 539616
Number of extensions: 4318371
Number of successful extensions: 8651
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 8476
Number of HSP's gapped (non-prelim): 103
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)