Query 026041
Match_columns 244
No_of_seqs 152 out of 1420
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 04:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dss_B Geranylgeranyl transfer 100.0 1.8E-58 6E-63 403.2 24.9 239 2-240 16-254 (331)
2 3q7a_B Farnesyltransferase bet 100.0 1.8E-56 6.1E-61 403.8 20.3 236 3-239 60-338 (520)
3 3dra_B Geranylgeranyltransfera 100.0 4.7E-56 1.6E-60 392.3 19.4 237 1-239 1-309 (390)
4 1n4q_B Geranyltransferase type 100.0 3E-55 1E-59 387.6 20.2 233 3-239 19-284 (377)
5 2h6f_B Protein farnesyltransfe 100.0 2.2E-54 7.5E-59 388.7 21.0 235 3-239 72-312 (437)
6 3dss_B Geranylgeranyl transfer 100.0 5.3E-51 1.8E-55 356.0 24.3 238 3-240 65-303 (331)
7 2h6f_B Protein farnesyltransfe 100.0 2.1E-45 7.2E-50 330.4 20.3 237 4-240 121-375 (437)
8 1n4q_B Geranyltransferase type 100.0 2.2E-43 7.4E-48 311.9 22.5 235 3-239 66-333 (377)
9 3dra_B Geranylgeranyltransfera 100.0 7E-43 2.4E-47 308.3 21.3 234 5-239 54-361 (390)
10 3q7a_B Farnesyltransferase bet 100.0 6.6E-43 2.3E-47 315.5 16.8 238 4-241 109-424 (520)
11 2sqc_A Squalene-hopene cyclase 100.0 7.6E-28 2.6E-32 226.6 20.9 232 6-241 333-627 (631)
12 1w6k_A Lanosterol synthase; cy 99.9 2.7E-27 9.1E-32 225.5 17.8 236 6-242 411-723 (732)
13 1w6k_A Lanosterol synthase; cy 99.9 5E-21 1.7E-25 182.4 17.4 231 6-238 358-662 (732)
14 2sqc_A Squalene-hopene cyclase 99.9 1.2E-20 4E-25 177.7 19.5 232 6-239 283-567 (631)
15 1qqf_A Protein (complement C3D 99.8 6.4E-18 2.2E-22 143.9 17.0 179 54-241 40-276 (277)
16 2wy7_A Complement C3D fragment 99.8 1.2E-17 4.2E-22 144.4 16.9 180 54-242 56-293 (310)
17 1qqf_A Protein (complement C3D 99.6 9.5E-15 3.3E-19 124.2 16.7 173 8-189 42-272 (277)
18 1hzf_A Complement factor C4A; 99.6 7.8E-15 2.7E-19 129.6 13.8 182 53-242 92-363 (367)
19 2wy7_A Complement C3D fragment 99.6 3.7E-14 1.3E-18 122.5 16.5 175 8-191 58-290 (310)
20 1hzf_A Complement factor C4A; 99.5 1.1E-12 3.6E-17 115.9 15.7 177 6-190 93-359 (367)
21 2pn5_A TEP1R, thioester-contai 99.4 2.9E-12 9.9E-17 129.6 15.1 179 54-241 874-1104(1325)
22 2hr0_B Complement C3 alpha' ch 99.4 8.5E-12 2.9E-16 122.0 15.6 178 54-241 301-537 (915)
23 4acq_A Alpha-2-macroglobulin; 99.2 1.1E-10 3.8E-15 118.6 15.0 220 7-241 986-1244(1451)
24 2hr0_B Complement C3 alpha' ch 99.2 5.2E-10 1.8E-14 109.4 16.0 174 8-190 303-534 (915)
25 1r76_A Pectate lyase; A-helica 99.1 9.7E-10 3.3E-14 96.7 11.4 159 54-216 83-334 (408)
26 2pn5_A TEP1R, thioester-contai 99.0 4.1E-09 1.4E-13 106.7 13.0 172 10-190 878-1101(1325)
27 1r76_A Pectate lyase; A-helica 98.9 3E-09 1E-13 93.6 9.2 162 6-168 83-334 (408)
28 2b39_A C3; thioester, immune d 98.9 3.5E-08 1.2E-12 101.8 17.2 205 13-240 1055-1283(1661)
29 4fxk_B Complement C4-A alpha c 98.9 7.4E-08 2.5E-12 92.5 18.3 210 12-240 376-638 (767)
30 1gxm_A Pectate lyase; mechanis 98.8 7.4E-09 2.5E-13 88.7 7.7 153 56-210 35-251 (332)
31 1gxm_A Pectate lyase; mechanis 98.7 2.2E-09 7.5E-14 92.0 0.4 154 10-163 37-252 (332)
32 3cu7_A Complement C5; Mg domai 98.7 1.3E-07 4.3E-12 97.8 13.2 214 6-240 1042-1302(1676)
33 3prx_B Cobra venom factor; imm 98.6 3.6E-09 1.2E-13 108.3 0.0 206 7-241 1026-1266(1642)
34 4acq_A Alpha-2-macroglobulin; 98.6 1.3E-06 4.5E-11 89.0 17.6 155 54-214 985-1156(1451)
35 2bb6_A TCII, TC II, transcobal 98.5 7.9E-07 2.7E-11 78.7 10.9 134 33-187 136-281 (414)
36 2b39_A C3; thioester, immune d 98.3 2.5E-05 8.6E-10 80.8 17.2 141 56-210 1050-1214(1661)
37 2bb6_A TCII, TC II, transcobal 98.2 4.1E-06 1.4E-10 74.1 9.3 129 86-235 141-281 (414)
38 4fxk_B Complement C4-A alpha c 98.1 0.00016 5.6E-09 69.2 18.7 91 31-121 337-440 (767)
39 2pmv_A Gastric intrinsic facto 98.0 2.8E-05 9.4E-10 68.5 9.0 112 102-235 132-257 (399)
40 3cu7_A Complement C5; Mg domai 97.8 0.00018 6.3E-09 74.5 13.4 141 58-210 1053-1217(1676)
41 2pmv_A Gastric intrinsic facto 97.7 8.7E-05 3E-09 65.3 8.4 124 39-187 120-257 (399)
42 3prx_B Cobra venom factor; imm 97.0 9.2E-05 3.1E-09 76.2 0.0 107 54-160 1032-1162(1642)
43 3sdr_A Alpha-bisabolene syntha 96.5 0.005 1.7E-07 59.2 7.5 103 6-113 56-163 (817)
44 3s9v_A Abietadiene synthase, c 96.1 0.0078 2.7E-07 57.6 6.2 99 7-113 34-136 (785)
45 3p5p_A Taxadiene synthase; cla 96.0 0.0069 2.4E-07 57.8 5.5 101 6-113 10-115 (764)
46 3pya_A ENT-copalyl diphosphate 95.9 0.35 1.2E-05 45.8 16.5 56 8-64 54-111 (727)
47 3pya_A ENT-copalyl diphosphate 95.3 0.019 6.4E-07 54.4 5.5 96 6-112 11-111 (727)
48 3sdr_A Alpha-bisabolene syntha 95.0 0.066 2.2E-06 51.5 8.2 101 54-159 56-161 (817)
49 3s9v_A Abietadiene synthase, c 94.7 0.046 1.6E-06 52.4 6.3 100 54-159 33-134 (785)
50 3p5p_A Taxadiene synthase; cla 94.0 0.11 3.8E-06 49.6 7.3 100 54-159 10-113 (764)
51 3k11_A Putative glycosyl hydro 83.8 11 0.00036 33.6 11.1 162 54-215 170-371 (445)
52 1wgn_A UBAP1, ubiquitin associ 53.3 18 0.00061 22.7 3.7 27 134-164 35-61 (63)
53 3pmm_A Putative cytoplasmic pr 50.8 27 0.00094 30.1 6.0 68 150-217 265-341 (382)
54 3pmm_A Putative cytoplasmic pr 41.8 1.4E+02 0.0047 25.6 9.0 68 54-121 265-341 (382)
55 4ae4_A Ubiquitin-associated pr 40.8 27 0.00091 24.9 3.6 60 149-208 35-114 (118)
56 2cpw_A CBL-interacting protein 39.9 35 0.0012 21.3 3.7 26 182-210 35-60 (64)
57 3k11_A Putative glycosyl hydro 39.9 83 0.0028 27.8 7.4 67 54-120 296-372 (445)
58 2dna_A Unnamed protein product 39.2 35 0.0012 21.8 3.5 17 149-165 47-63 (67)
59 2ip6_A PAPB, PEDB; immunity pr 35.2 50 0.0017 22.9 4.0 43 128-170 57-100 (112)
60 4b2v_A S64; toxin, ICK; NMR {S 35.1 23 0.00079 18.3 1.8 18 210-227 4-21 (32)
61 1wiv_A UBP14, ubiquitin-specif 31.7 49 0.0017 21.3 3.4 25 182-210 45-69 (73)
62 1vej_A Riken cDNA 4931431F19; 31.5 58 0.002 21.1 3.7 16 149-164 57-72 (74)
63 1vg5_A RSGI RUH-014, rhomboid 30.9 58 0.002 21.0 3.7 26 135-164 46-71 (73)
64 1nc5_A Hypothetical protein YT 22.9 1.6E+02 0.0054 24.9 6.1 65 150-214 243-323 (373)
65 2knz_A Ubiquilin-4; cytoplasm, 22.9 82 0.0028 18.7 3.1 23 135-161 29-51 (53)
66 3ren_A Glycosyl hydrolase, fam 22.5 98 0.0033 26.4 4.6 58 35-92 283-346 (350)
67 2crn_A Ubash3A protein; compac 22.2 78 0.0027 19.7 3.0 26 182-210 25-50 (64)
68 2dah_A Ubiquilin-3; UBA domain 21.8 1E+02 0.0035 18.4 3.4 14 149-162 37-50 (54)
69 1wji_A Tudor domain containing 21.7 89 0.0031 19.4 3.2 25 135-163 26-50 (63)
70 3ren_A Glycosyl hydrolase, fam 21.0 2.6E+02 0.0088 23.8 6.9 153 30-184 166-342 (350)
71 2ekk_A UBA domain from E3 ubiq 20.9 91 0.0031 17.8 2.9 22 182-208 25-46 (47)
No 1
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=1.8e-58 Score=403.18 Aligned_cols=239 Identities=55% Similarity=1.050 Sum_probs=226.3
Q ss_pred ccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCch
Q 026041 2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV 81 (244)
Q Consensus 2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~ 81 (244)
..|++++|++||+++.....++.++..++++++.+||++.+|++||..+.++++++++||++||++||||++.+++++|+
T Consensus 16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l 95 (331)
T 3dss_B 16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL 95 (331)
T ss_dssp CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccH
Confidence 36899999999999866667788999999999999999999999998777789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcC
Q 026041 82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161 (244)
Q Consensus 82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q 161 (244)
..||+|+++|.+++.++.++++++++||.++|++||||.+.+.+++|+++||||+++|.++|.++..+++++++||++||
T Consensus 96 ~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q 175 (331)
T 3dss_B 96 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM 175 (331)
T ss_dssp HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999888899999999999999999999999889999999999999999999887788999999999999
Q ss_pred CCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026041 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 162 ~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
++||||+..|+.++|+.+||||+++|.++++.+.++++++++||.++|.++|||++||+|.+|+|||||++..|..+-+
T Consensus 176 ~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~ 254 (331)
T 3dss_B 176 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGR 254 (331)
T ss_dssp CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999888999999999999999999999999999999999999988876543
No 2
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=1.8e-56 Score=403.76 Aligned_cols=236 Identities=24% Similarity=0.369 Sum_probs=212.3
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcccCCCCcCCCC--CCCC
Q 026041 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNI--GHDP 79 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~-~~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~~ 79 (244)
+|++++|++||+++... -+-.+...|.++++.+||++.+|++||. .+.+.++++++||++||+++|||++.+ ++.+
T Consensus 60 ~L~~~~Hi~yl~~~L~~-LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~ 138 (520)
T 3q7a_B 60 GLRKQEHTQFLASSFFQ-LPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIP 138 (520)
T ss_dssp CCCHHHHHHHHHHHHSC-BCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCC
T ss_pred ccCHHHHHHHHHHHhhh-CChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 69999999999998642 2234556689999999999999999995 344578899999999999999999999 9999
Q ss_pred chhhHHHHHHHHHHhcCC------CccC--HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHH
Q 026041 80 HVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD 151 (244)
Q Consensus 80 ~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e 151 (244)
|+.+||+||++|.+++.. +.+| ++++++||.++|++||||.+..+++.|+++||||++++.++|.++..+++
T Consensus 139 hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~ 218 (520)
T 3q7a_B 139 HLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLH 218 (520)
T ss_dssp CHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHT
T ss_pred cHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHH
Confidence 999999999999999763 3567 89999999999999999999888899999999999999999998888999
Q ss_pred HHHHHHHhcCCCCCCCCC-----------------------CCCCCcchhHHHHHHHHHHHhCCCC------CCCHHHHH
Q 026041 152 KAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLLG 202 (244)
Q Consensus 152 ~~~~~i~~~Q~~dGGf~~-----------------------~p~~~~~~~~T~~al~aL~~l~~~~------~~~~~~~~ 202 (244)
++++||++||++||||+. .|+.|+|+++|||||++|.+|+.++ .++.++++
T Consensus 219 kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~ 298 (520)
T 3q7a_B 219 NVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL 298 (520)
T ss_dssp THHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHH
T ss_pred HHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHH
Confidence 999999999999999999 6799999999999999999999863 57899999
Q ss_pred HHHHcccc---cCccccCCCCCCCCccccchhhHhhhhhh
Q 026041 203 WWLCERQV---KSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 203 ~wL~~~Q~---~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
+||.+||. ++|||+|||||.+|+|||||.+..|..+.
T Consensus 299 ~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~ 338 (520)
T 3q7a_B 299 RWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAE 338 (520)
T ss_dssp HHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHH
T ss_pred HHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHH
Confidence 99999995 46999999999999999999877766554
No 3
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=4.7e-56 Score=392.25 Aligned_cols=237 Identities=24% Similarity=0.314 Sum_probs=209.2
Q ss_pred CccccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcccCC----CCcCCC
Q 026041 1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAGN 74 (244)
Q Consensus 1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~~d----Ggf~~~ 74 (244)
|..|++++|++|++++.+. -+-.+...|.++++.+||++.+|++||.+ .+.++++.++||.+||.++ |||++.
T Consensus 1 ~~~l~~~kHiky~~~~L~~-Lp~~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~ 79 (390)
T 3dra_B 1 MNQLLINKHEKFFNRCLIG-LPSTAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRST 79 (390)
T ss_dssp -CCCCHHHHHHHHHHHHHC-CCGGGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSS
T ss_pred CccccHHHHHHHHHHHHHh-CCcchhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCC
Confidence 7899999999999986552 22234556899999999999999999986 4557889999999998653 999998
Q ss_pred C-----C---CCCchhhHHHHHHHHHHhcCC--CccCHHHHHHHHHhccC---C-CCCccCCC-----------CCCCCh
Q 026041 75 I-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVDT 129 (244)
Q Consensus 75 ~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~q~---~-dGgf~~~~-----------~~~~d~ 129 (244)
+ + +.+|+.+||+||++|.++++. +.+|++++++||.++|+ + ||||...+ .++.|+
T Consensus 80 ~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~ 159 (390)
T 3dra_B 80 HYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDL 159 (390)
T ss_dssp GGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCH
T ss_pred ccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchH
Confidence 5 5 579999999999999999874 78899999999999998 6 89999543 579999
Q ss_pred hhHHHHHHHHHhhccCC-------------hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026041 130 RFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (244)
Q Consensus 130 ~~ty~al~~l~~l~~~~-------------~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~ 196 (244)
|++|||++++.+|+... .++++++++||++||++||||+..|+.|+|+++|||||++|.+++++ ..
T Consensus 160 R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~~ 238 (390)
T 3dra_B 160 RVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-LE 238 (390)
T ss_dssp HHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-GG
T ss_pred HHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-cc
Confidence 99999999999999876 57899999999999999999999999999999999999999999986 47
Q ss_pred CHHHHHHHHHcccc----------------------------cCccccCCCCCCCCccccchhhHhhhhhh
Q 026041 197 DKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 197 ~~~~~~~wL~~~Q~----------------------------~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
+++++++||.+||. ++|||+|||||.+|+|||||++..|..+-
T Consensus 239 d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~iL~ 309 (390)
T 3dra_B 239 KLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLYNID 309 (390)
T ss_dssp GCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHHHhc
Confidence 88999999999996 57999999999999999999988776654
No 4
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=3e-55 Score=387.64 Aligned_cols=233 Identities=29% Similarity=0.479 Sum_probs=211.1
Q ss_pred cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccc---------CCCCcC
Q 026041 3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA 72 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~---------~dGgf~ 72 (244)
+|.+++|++||+++.+. +.+ +...|.++++.+||++.+|++||.....+++++++||+++|+ ++|||+
T Consensus 19 ~l~~~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~ 96 (377)
T 1n4q_B 19 DFLRDRHVRFFQRCLQVLPER--YSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR 96 (377)
T ss_dssp CCCHHHHHHHHHHHHHEECGG--GGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred ccCHHHHHHHHHHHhhcCCcc--ccccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence 48999999999998764 444 556789999999999999999997555579999999999999 689999
Q ss_pred CCCCC-----------------CCchhhHHHHHHHHHHhc-CCCccCHHHHHHHHHhccCCCCCccCC-CCCCCChhhHH
Q 026041 73 GNIGH-----------------DPHVLYTLSAVQVLALFD-KVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY 133 (244)
Q Consensus 73 ~~~~~-----------------~~~~~~T~~al~~L~~l~-~~~~~~~~~~~~~l~~~q~~dGgf~~~-~~~~~d~~~ty 133 (244)
++++. .+|+.+||+||++|.+++ .++.++++++++||.++|++||||.+. ..++.|+|+||
T Consensus 97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY 176 (377)
T 1n4q_B 97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY 176 (377)
T ss_dssp SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence 98764 489999999999999997 467889999999999999999999986 56899999999
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC----CHHHHHHHHHccc
Q 026041 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209 (244)
Q Consensus 134 ~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~----~~~~~~~wL~~~Q 209 (244)
||++++.++|..+.++++++++||++||++||||+..|+.|+|+.+||||+++|.++++.+.. +++++++||.+||
T Consensus 177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence 999999999987778999999999999999999999999999999999999999999976543 7899999999999
Q ss_pred ccCccccCCCCCCCCccccchhhHhhhhhh
Q 026041 210 VKSGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 210 ~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
+|||+|||||.+|+|||||.+..|..+.
T Consensus 257 --~gGf~GR~nK~~D~CYSfWv~~~l~iL~ 284 (377)
T 1n4q_B 257 --QNGYHGRPNKPVDTCYSFWVGATLKLLK 284 (377)
T ss_dssp --SSSBCSSTTSCCCTTHHHHHHHHHHHTT
T ss_pred --CCCcCCCCCcchhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887654
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.2e-54 Score=388.70 Aligned_cols=235 Identities=31% Similarity=0.499 Sum_probs=217.5
Q ss_pred cccHHHHHHHHHHc-ccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026041 3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (244)
Q Consensus 3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (244)
+|++++|++||+++ |+.+|+|.... .++++.+||++.+|++||.. ....++++++||+++|++||||++.+...+|
T Consensus 72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~ 149 (437)
T 2h6f_B 72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH 149 (437)
T ss_dssp CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence 58899999999999 88999988763 56788899999999999964 3346889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHH
Q 026041 81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i 157 (244)
+..|++||.+|.+++.. +.++++++++||+++|++||||.+++++++|+++||||+++|.++|..+...++++++||
T Consensus 150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L 229 (437)
T 2h6f_B 150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI 229 (437)
T ss_dssp HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999863 678899999999999999999999888999999999999999999987777889999999
Q ss_pred HhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc-cCccccCCCCCCCCccccchhhHhhh
Q 026041 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGIFSQPNLMME 236 (244)
Q Consensus 158 ~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~-~~GGf~~~~~~~~d~~ys~~~l~~l~ 236 (244)
++||++||||+..|+.++|+.+|||||++|.++++.+.++++++++||++||. ++|||++||||.+|+|||||.+..|.
T Consensus 230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L~ 309 (437)
T 2h6f_B 230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLP 309 (437)
T ss_dssp HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHHH
T ss_pred HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999996 89999999999999999999988877
Q ss_pred hhh
Q 026041 237 HSC 239 (244)
Q Consensus 237 ~~~ 239 (244)
.+.
T Consensus 310 lL~ 312 (437)
T 2h6f_B 310 LLH 312 (437)
T ss_dssp HHH
T ss_pred HHh
Confidence 664
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=100.00 E-value=5.3e-51 Score=355.99 Aligned_cols=238 Identities=20% Similarity=0.294 Sum_probs=225.5
Q ss_pred cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchh
Q 026041 3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL 82 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~ 82 (244)
+++++++++||+++|++||+|....++++++..||.|+.+|.+++....++++++++||.++|++||||+..+..++|+.
T Consensus 65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~ 144 (331)
T 3dss_B 65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR 144 (331)
T ss_dssp GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence 57899999999999999999998877889999999999999999876667899999999999999999999888899999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC
Q 026041 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN 162 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~ 162 (244)
.||+|+.+|.+++..+.++++++++||.+||++||||+++|+.++|+.+||||+++|.+++..+.++++++++||.++|+
T Consensus 145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~ 224 (331)
T 3dss_B 145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 224 (331)
T ss_dssp HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence 99999999999998887889999999999999999999999999999999999999999998877889999999999999
Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccC-ccccCCCCCCCCccccchhhHhhhhhhh
Q 026041 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 163 ~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~-GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
+||||+.+|++++|+++|||++++|.++++.+.++.+++++||++||+.+ |||+.+|++.+|.++|||.|..|..+-.
T Consensus 225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~ 303 (331)
T 3dss_B 225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGE 303 (331)
T ss_dssp TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999988899999999999999876 9999999999999999999999887654
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=100.00 E-value=2.1e-45 Score=330.37 Aligned_cols=237 Identities=18% Similarity=0.240 Sum_probs=217.5
Q ss_pred ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCCCCc
Q 026041 4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH 80 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~ 80 (244)
..++++++||.++|++||+|.....+.+++..||.|+.+|.++|.. ..++++++++||+++|++||||+..++.+++
T Consensus 121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d 200 (437)
T 2h6f_B 121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD 200 (437)
T ss_dssp HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence 3578999999999999999987666678999999999999999974 3457999999999999999999998888999
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhc
Q 026041 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC 160 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~ 160 (244)
+..||+|+.+|.+++..+...++++++||.++|++||||+.+|+.++|..+||||+++|.++|..+..+++++++||.++
T Consensus 201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r 280 (437)
T 2h6f_B 201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR 280 (437)
T ss_dssp HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence 99999999999999887666789999999999999999999999999999999999999999988788999999999999
Q ss_pred CC-CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHc-ccccCccccCCCCCCCCc
Q 026041 161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV 225 (244)
Q Consensus 161 Q~-~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~wL~~-~Q~~~GGf~~~~~~~~d~ 225 (244)
|. ++|||..+|++.+|++||||++++|.+++.. ..+|.+++.+||+. +|+++|||+.+|++.+|.
T Consensus 281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~ 360 (437)
T 2h6f_B 281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF 360 (437)
T ss_dssp BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence 98 8999999999999999999999999999753 14789999999998 689999999999999999
Q ss_pred cccchhhHhhhhhhh
Q 026041 226 GIFSQPNLMMEHSCR 240 (244)
Q Consensus 226 ~ys~~~l~~l~~~~~ 240 (244)
++||..|..|+.+..
T Consensus 361 yHT~y~L~gLsl~~~ 375 (437)
T 2h6f_B 361 YHTCYCLSGLSIAQH 375 (437)
T ss_dssp HHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHhcc
Confidence 999988888887753
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=100.00 E-value=2.2e-43 Score=311.87 Aligned_cols=235 Identities=17% Similarity=0.234 Sum_probs=214.5
Q ss_pred cccHHHHHHHHHHccc---------CCCCcccccc-----------------ccchHHHHHHHHHHHHhhCCC-CCcCHH
Q 026041 3 ELAADKHVKYIISVEK---------KKDSFESVVM-----------------EHLRLNGAYWGLTTLDILGKL-DAVDEE 55 (244)
Q Consensus 3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~-----------------~~~~~~~~y~al~~l~llg~~-~~~~~~ 55 (244)
.++++++++||.++|+ ++|||..+.. |.+++..||.||.+|.+++.. +.++++
T Consensus 66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~ 145 (377)
T 1n4q_B 66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE 145 (377)
T ss_dssp GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence 4568999999999999 6899975542 347899999999999999964 456899
Q ss_pred HHHHHHHhcccCCCCcCCC-CCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH
Q 026041 56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI 134 (244)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~ 134 (244)
++++||.++|++||+|.+. ...+.++..||+|+.++.+++..+.++++++++||++||+.||||+..|+.|++..+|||
T Consensus 146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c 225 (377)
T 1n4q_B 146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC 225 (377)
T ss_dssp HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence 9999999999999999986 567899999999999999999877788999999999999999999999999999999999
Q ss_pred HHHHHHhhccCChh----hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccc
Q 026041 135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV 210 (244)
Q Consensus 135 al~~l~~l~~~~~~----~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~ 210 (244)
|+++|.+++..+.. +++++++||.+.| +|||.++|++.+|++|+||++++|.+++..+.+|.+++++||+++|+
T Consensus 226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~ 303 (377)
T 1n4q_B 226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD 303 (377)
T ss_dssp HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence 99999999975433 7899999999999 89999999999999999999999999999888999999999999998
Q ss_pred c-CccccCCCCCCCCccccchhhHhhhhhh
Q 026041 211 K-SGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 211 ~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
+ +|||+.+|++.+|.++||..|..|+.+.
T Consensus 304 ~~~GGf~~~p~~~~D~~HT~~~LagLsl~~ 333 (377)
T 1n4q_B 304 RLVGGFAKWPDSHPDALHAYFGICGLSLME 333 (377)
T ss_dssp TTTCSBCSSTTSCCBHHHHHHHHHHHHHTT
T ss_pred CCCCCcCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 7 9999999999999999999998888764
No 9
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=100.00 E-value=7e-43 Score=308.26 Aligned_cols=234 Identities=21% Similarity=0.277 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHcccCC----CCccccc-----c---ccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccc---C
Q 026041 5 AADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD---E 67 (244)
Q Consensus 5 ~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~al~~l~llg~~--~~~~~~~~i~~l~~~q~---~ 67 (244)
++++.++||.++|.++ |+|.... + +.+++..||+||.+|.+|+.. ..++++++++||.+||+ +
T Consensus 54 ~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~ 133 (390)
T 3dra_B 54 ELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGI 133 (390)
T ss_dssp HHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSST
T ss_pred HHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCC
Confidence 5778999999998753 7887653 3 578999999999999999986 45789999999999999 7
Q ss_pred -CCCcCCCC-----------CCCCchhhHHHHHHHHHHhcCCC-------------ccCHHHHHHHHHhccCCCCCccCC
Q 026041 68 -SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSGD 122 (244)
Q Consensus 68 -dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~q~~dGgf~~~ 122 (244)
||||+..+ +.+.++..||+|+.++.+|+... .+|++++++||.+||+.||||+..
T Consensus 134 ~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~ 213 (390)
T 3dra_B 134 NKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST 213 (390)
T ss_dssp TTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS
T ss_pred CCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence 89999654 57899999999999999998766 688999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCC----------------------------CCCCCCCCCCCC
Q 026041 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGGE 174 (244)
Q Consensus 123 ~~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~----------------------------~dGGf~~~p~~~ 174 (244)
|+.|+|..+||||+++|.+++.+ ..+++++++||.++|. ++|||.++|++.
T Consensus 214 p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl 292 (390)
T 3dra_B 214 IMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKL 292 (390)
T ss_dssp TTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCC
T ss_pred CCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCc
Confidence 99999999999999999999986 4688999999999997 479999999999
Q ss_pred cchhHHHHHHHHHHHhCC--CCCCCHHHHHHHHHcc-ccc-CccccCCCCCCCCccccchhhHhhhhhh
Q 026041 175 SHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 175 ~~~~~T~~al~aL~~l~~--~~~~~~~~~~~wL~~~-Q~~-~GGf~~~~~~~~d~~ys~~~l~~l~~~~ 239 (244)
+|++|+||++++|.+++. .+.+|.+++.+||+.| |++ .|||+.+|++.||.++||..|..|+.+.
T Consensus 293 ~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~ 361 (390)
T 3dra_B 293 SDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN 361 (390)
T ss_dssp BCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcC
Confidence 999999999999999994 5678999999999998 575 9999999999999999998888887764
No 10
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=100.00 E-value=6.6e-43 Score=315.46 Aligned_cols=238 Identities=18% Similarity=0.235 Sum_probs=214.4
Q ss_pred ccHHHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCC------CcC--HHHHHHHHHhcccCCCCcCC
Q 026041 4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG 73 (244)
Q Consensus 4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~llg~~~------~~~--~~~~i~~l~~~q~~dGgf~~ 73 (244)
.+++++++||.++|+++|||.... .+.+++..||.||.+|.+++... .++ ++++++||.++|++||+|..
T Consensus 109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g 188 (520)
T 3q7a_B 109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV 188 (520)
T ss_dssp HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence 467899999999999999999887 78899999999999999999752 234 88999999999999999998
Q ss_pred CCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccC-----------------------CCCCCCChh
Q 026041 74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR 130 (244)
Q Consensus 74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~-----------------------~~~~~~d~~ 130 (244)
..+.+.++..||+|+.+|.+++..+..+++++++||.+||+.||||+. .|+.|+|..
T Consensus 189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG 268 (520)
T 3q7a_B 189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG 268 (520)
T ss_dssp STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence 877889999999999999999987777889999999999999999999 568899999
Q ss_pred hHHHHHHHHHhhccCC------hhhHHHHHHHHHhcCC---CCCCCCCCCCCCcchhHHHHHHHHHHHhCCC--------
Q 026041 131 FSYIAICCLSILQRLD------KINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------- 193 (244)
Q Consensus 131 ~ty~al~~l~~l~~~~------~~~~e~~~~~i~~~Q~---~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~-------- 193 (244)
+||||+++|.+|+.++ .++.+++++|+..+|. ++|||.++|++.+|++|+||+.++|.+|+..
T Consensus 269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~ 348 (520)
T 3q7a_B 269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK 348 (520)
T ss_dssp HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence 9999999999999863 5689999999999996 4699999999999999999999999998753
Q ss_pred ------------------------CCCCHHHHHHHHH-cccccC---ccccCCCCCCCCccccchhhHhhhhhhhc
Q 026041 194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDVGIFSQPNLMMEHSCRS 241 (244)
Q Consensus 194 ------------------------~~~~~~~~~~wL~-~~Q~~~---GGf~~~~~~~~d~~ys~~~l~~l~~~~~~ 241 (244)
..+|.+++.+||+ .+|.+. |||+.+|++.+|.+|||..|.-|+.++.+
T Consensus 349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGLSl~qh~ 424 (520)
T 3q7a_B 349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQHK 424 (520)
T ss_dssp C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCC
Confidence 2368899999998 589876 99999999999999999998888877643
No 11
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.96 E-value=7.6e-28 Score=226.57 Aligned_cols=232 Identities=18% Similarity=0.174 Sum_probs=178.5
Q ss_pred HHHHHHHHHHcccCC-C------------Ccccccc--ccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccc
Q 026041 6 ADKHVKYIISVEKKK-D------------SFESVVM--EHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD 66 (244)
Q Consensus 6 ~~~~~~yl~~~q~~d-g------------~~~~~~~--~~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~ 66 (244)
.+++++||++.|..+ | +|.+... ..++++.|.+++.+|..++... ....+++++||+++|+
T Consensus 333 ~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~ 412 (631)
T 2sqc_A 333 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS 412 (631)
T ss_dssp HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcC
Confidence 578999999988642 3 3332211 2367899999999999998742 1246789999999999
Q ss_pred CCCCcCCCCC-------------------CCCchhhHHHHHHHHHHhcCC-CccCHHHHHHHHHhccCCCCCccCCCCCC
Q 026041 67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE 126 (244)
Q Consensus 67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~q~~dGgf~~~~~~~ 126 (244)
+||||+.++. ..+++..|..++.+|..++.. ....++++++||.++|++||||.+.+
T Consensus 413 ~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w--- 489 (631)
T 2sqc_A 413 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW--- 489 (631)
T ss_dssp TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS---
T ss_pred CCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC---
Confidence 9999976532 126778999999999887642 22347899999999999999997654
Q ss_pred CChhhHHHHHHHH---HhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCC----------CCCcchhHHHHHHHHHHHhCC
Q 026041 127 VDTRFSYIAICCL---SILQRL-DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGA 192 (244)
Q Consensus 127 ~d~~~ty~al~~l---~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p----------~~~~~~~~T~~al~aL~~l~~ 192 (244)
+.+++|++..++ ..++.. ....++++++||+++|++||||+..+ +.++++..|+||+.+|..++.
T Consensus 490 -g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~ 568 (631)
T 2sqc_A 490 -GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR 568 (631)
T ss_dssp -BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence 345666654444 444432 24578999999999999999998653 457899999999999999987
Q ss_pred CCCCCHHHHHHHHHcccccCccccCCCCC---CCCccccc-------hhhHhhhhhhhc
Q 026041 193 LHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVGIFS-------QPNLMMEHSCRS 241 (244)
Q Consensus 193 ~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~---~~d~~ys~-------~~l~~l~~~~~~ 241 (244)
.+...++++++||.++|+++|||...... ++..||-- |+|.+|++|.++
T Consensus 569 ~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~ 627 (631)
T 2sqc_A 569 AESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQA 627 (631)
T ss_dssp SSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHHHHH
Confidence 65556899999999999999999876643 55666552 899999999875
No 12
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.95 E-value=2.7e-27 Score=225.53 Aligned_cols=236 Identities=15% Similarity=0.148 Sum_probs=182.2
Q ss_pred HHHHHHHHHHcccCC--------------CCccccccc--cchHHHHHHHHHHHHhhCCC--------CCcCHHHHHHHH
Q 026041 6 ADKHVKYIISVEKKK--------------DSFESVVME--HLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI 61 (244)
Q Consensus 6 ~~~~~~yl~~~q~~d--------------g~~~~~~~~--~~~~~~~y~al~~l~llg~~--------~~~~~~~~i~~l 61 (244)
.+++++||++.|..+ |+|.+...+ .+++..|.+++.+|..+... .....+++++||
T Consensus 411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL 490 (732)
T 1w6k_A 411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL 490 (732)
T ss_dssp HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence 468999999998755 888765432 46788899999999887421 122467899999
Q ss_pred HhcccCCCCcCCCCC---------------------CCCchhhHHHHHHHHHHhcCC----C----ccCHHHHHHHHHhc
Q 026041 62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV----D----ILDADKVSNYIVGL 112 (244)
Q Consensus 62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~----~----~~~~~~~~~~l~~~ 112 (244)
+++|++||||+.+.. ..+++..|.+++.+|..++.. . ...++++++||.++
T Consensus 491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~ 570 (732)
T 1w6k_A 491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ 570 (732)
T ss_dssp HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence 999999999975421 124677899999999877531 1 12478999999999
Q ss_pred cCCCCCccCCCCCCCChhhHHHHHHHHHhhccCCh-----hhHHHHHHHHHhcCCCCCCCCCC----------CCCCcch
Q 026041 113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK-----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS 177 (244)
Q Consensus 113 q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~-----~~~e~~~~~i~~~Q~~dGGf~~~----------p~~~~~~ 177 (244)
|++||||.++++ ..++..|++++.+|..+|.... ..++++++||+++|++||||+.. ++.++++
T Consensus 571 Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v 649 (732)
T 1w6k_A 571 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI 649 (732)
T ss_dssp SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred cCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence 999999988653 2344556678888888887431 46899999999999999999874 3557899
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCC--CCCCCcccc----c---hhhHhhhhhhhcc
Q 026041 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGIF----S---QPNLMMEHSCRSS 242 (244)
Q Consensus 178 ~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~--~~~~d~~ys----~---~~l~~l~~~~~~~ 242 (244)
..|.||+.+|..++..+..+++++++||.++|+++|||.-.+ +.++..||- | |++.+|++|+++.
T Consensus 650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~ 723 (732)
T 1w6k_A 650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLY 723 (732)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhc
Confidence 999999999988887655568899999999999999998544 335566662 2 8999999998754
No 13
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.86 E-value=5e-21 Score=182.41 Aligned_cols=231 Identities=13% Similarity=0.086 Sum_probs=166.0
Q ss_pred HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhcccCC-----------
Q 026041 6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES----------- 68 (244)
Q Consensus 6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~----~~~~~~~i~~l~~~q~~d----------- 68 (244)
..+|++.|.+. ..+||.+. .....+.++.|.+++.+|.-.|... ....+++++||+++|..+
T Consensus 358 ~~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~ 436 (732)
T 1w6k_A 358 FQEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ 436 (732)
T ss_dssp HHHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred HHHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccC
Confidence 34566666664 34665332 2111267899999999998887532 124678999999999766
Q ss_pred ---CCcCCCCC--CCCchhhHHHHHHHHHHhcCCC-----cc---CHHHHHHHHHhccCCCCCccCCCC-----------
Q 026041 69 ---GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----IL---DADKVSNYIVGLQNEDGSFSGDIW----------- 124 (244)
Q Consensus 69 ---Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~---~~~~~~~~l~~~q~~dGgf~~~~~----------- 124 (244)
|||+.... ..+++..|..++.+|..+.... .+ .++++++||.++|++||||.....
T Consensus 437 ~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~ 516 (732)
T 1w6k_A 437 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN 516 (732)
T ss_dssp CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred CCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCc
Confidence 88876543 4578999999999998874321 12 358899999999999999963110
Q ss_pred -----CC-----CChhhHHHHHHHHHhhccC--------ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHH
Q 026041 125 -----GE-----VDTRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA 186 (244)
Q Consensus 125 -----~~-----~d~~~ty~al~~l~~l~~~--------~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~a 186 (244)
+. +.+..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|++++.+
T Consensus 517 ~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~A 595 (732)
T 1w6k_A 517 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEA 595 (732)
T ss_dssp CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHH
T ss_pred chhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHH
Confidence 11 1223455567777666542 124588999999999999999987554 3566789999999
Q ss_pred HHHhCCCCC-----CCHHHHHHHHHcccccCccccCCC----------CCCCCccccchhhHhhhhh
Q 026041 187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGIFSQPNLMMEHS 238 (244)
Q Consensus 187 L~~l~~~~~-----~~~~~~~~wL~~~Q~~~GGf~~~~----------~~~~d~~ys~~~l~~l~~~ 238 (244)
|.+++.... ..++++++||+++|+++|||+..+ .+.+|.+.+.|+|.+|-..
T Consensus 596 L~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~a 662 (732)
T 1w6k_A 596 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV 662 (732)
T ss_dssp HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHHT
T ss_pred HHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 999987432 347899999999999999998642 4567888898999887543
No 14
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.86 E-value=1.2e-20 Score=177.65 Aligned_cols=232 Identities=16% Similarity=0.049 Sum_probs=168.8
Q ss_pred HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCC-------------C
Q 026041 6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDES-------------G 69 (244)
Q Consensus 6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~d-------------G 69 (244)
.++|++.|.+.. .+||++..... .+.++.|.|++.+|..+|... ....+++++||.++|..+ |
T Consensus 283 ~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G 361 (631)
T 2sqc_A 283 FIKGWEGLELYGVELDYGGWMFQAS-ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG 361 (631)
T ss_dssp HHHHHHGGGGGEEECTTSCEEECSS-CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred HHHHHHHHHhceEEcCCCceeeCCC-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence 456666666653 46756544433 378999999999999999753 346889999999998643 4
Q ss_pred CcCCC--CCCCCchhhHHHHHHHHHHhcCCC----ccCHHHHHHHHHhccCCCCCccCCCC-------------------
Q 026041 70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW------------------- 124 (244)
Q Consensus 70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~------------------- 124 (244)
||+.. +...+++..|..++.+|..++... ...++++++||.++|++||||+....
T Consensus 362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~ 441 (631)
T 2sqc_A 362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT 441 (631)
T ss_dssp CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence 44322 234578999999999998877632 11367899999999999999964211
Q ss_pred CCCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC-CCCHHHHH
Q 026041 125 GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH-HVDKDLLG 202 (244)
Q Consensus 125 ~~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~-~~~~~~~~ 202 (244)
..+++..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|..++.+|..++... ...+++++
T Consensus 442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav 520 (631)
T 2sqc_A 442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKAL 520 (631)
T ss_dssp CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 014455677777777777642 235689999999999999999965443 345667888888888887532 34578999
Q ss_pred HHHHcccccCccccCCC----------CCCCCccccchhhHhhhhhh
Q 026041 203 WWLCERQVKSGGLNGRP----------EKLPDVGIFSQPNLMMEHSC 239 (244)
Q Consensus 203 ~wL~~~Q~~~GGf~~~~----------~~~~d~~ys~~~l~~l~~~~ 239 (244)
+||+++|++||||+..+ ....|.+.|+|+|..|...-
T Consensus 521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag 567 (631)
T 2sqc_A 521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGG 567 (631)
T ss_dssp HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999997543 23567788999998887653
No 15
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.78 E-value=6.4e-18 Score=143.85 Aligned_cols=179 Identities=16% Similarity=0.115 Sum_probs=130.6
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCCC----
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---- 125 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~~---- 125 (244)
.++++++++++|++||||+.+++.+++...|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~ 119 (277)
T 1qqf_A 40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE 119 (277)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence 445666799999999999999999999999999999999887653444 5789999996 99999999865321
Q ss_pred ---------CCChhhHHHHHHHHHhhcc-----C--ChhhHHHHHHHHHhcCCC--------------------------
Q 026041 126 ---------EVDTRFSYIAICCLSILQR-----L--DKINVDKAVEYIVSCKNL-------------------------- 163 (244)
Q Consensus 126 ---------~~d~~~ty~al~~l~~l~~-----~--~~~~~e~~~~~i~~~Q~~-------------------------- 163 (244)
++++..|..++.+|...+. . ....++++++||.++++.
T Consensus 120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~ 199 (277)
T 1qqf_A 120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT 199 (277)
T ss_dssp GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 1123334444444443322 1 134678999999998764
Q ss_pred -------CCCCCCCCCCC-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026041 164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM 235 (244)
Q Consensus 164 -------dGGf~~~p~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l 235 (244)
+|++-..++.. .++..|.+|+-+|...+. ..+.++.++||.++|+++|||.. +-.+..+|.+|
T Consensus 200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL 270 (277)
T 1qqf_A 200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQAL 270 (277)
T ss_dssp HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHH
Confidence 44454444422 266788889888877764 46789999999999999999975 35566888888
Q ss_pred hhhhhc
Q 026041 236 EHSCRS 241 (244)
Q Consensus 236 ~~~~~~ 241 (244)
..|..+
T Consensus 271 ~~y~~~ 276 (277)
T 1qqf_A 271 AQYRAD 276 (277)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888653
No 16
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.77 E-value=1.2e-17 Score=144.36 Aligned_cols=180 Identities=17% Similarity=0.119 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCCC----
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG---- 125 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~~---- 125 (244)
.++++++++++|++||||+.+++.+++...|.+++.+|..+.....++ ++++++||.+ .|++||+|.+...-
T Consensus 56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~ 135 (310)
T 2wy7_A 56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 135 (310)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence 455667799999999999999998999999999999999887643444 5789999996 99999999865321
Q ss_pred ---------CCChhhHHHHHHHHHhhcc-----C--ChhhHHHHHHHHHhcCCC--------------------------
Q 026041 126 ---------EVDTRFSYIAICCLSILQR-----L--DKINVDKAVEYIVSCKNL-------------------------- 163 (244)
Q Consensus 126 ---------~~d~~~ty~al~~l~~l~~-----~--~~~~~e~~~~~i~~~Q~~-------------------------- 163 (244)
++++..|..++.+|...+. . ....++++++||.++|+.
T Consensus 136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~ 215 (310)
T 2wy7_A 136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN 215 (310)
T ss_dssp GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1123334444444443322 1 134678999999998763
Q ss_pred -------CCCCCCCCCCC-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026041 164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM 235 (244)
Q Consensus 164 -------dGGf~~~p~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l 235 (244)
+|+|-..++.. .++..|.+|+.+|...+. ..+.++.++||.++|+++|||.. +-.+..+|.+|
T Consensus 216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL 286 (310)
T 2wy7_A 216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQAL 286 (310)
T ss_dssp HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHH
T ss_pred HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHH
Confidence 34443334322 266789999988887764 46789999999999999999964 24556788999
Q ss_pred hhhhhcc
Q 026041 236 EHSCRSS 242 (244)
Q Consensus 236 ~~~~~~~ 242 (244)
..|.++.
T Consensus 287 ~~y~~~~ 293 (310)
T 2wy7_A 287 AQYQKDA 293 (310)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9887654
No 17
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.63 E-value=9.5e-15 Score=124.20 Aligned_cols=173 Identities=14% Similarity=0.132 Sum_probs=120.4
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026041 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (244)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (244)
+.++.+.++|++||+|..|..+++..+.|.+++.+|..+.... +...+++++||.+ .|++||+|....+.
T Consensus 42 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~ 121 (277)
T 1qqf_A 42 KGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI 121 (277)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence 3334488899999999999888899999999999999887532 2246789999996 99999999765321
Q ss_pred -------CCchhhHHHHHHHHHHhcC-----CC--ccCHHHHHHHHHhccCC----------------------------
Q 026041 78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE---------------------------- 115 (244)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~q~~---------------------------- 115 (244)
++++..|++++.+|...+. .+ ...++++++||.+++++
T Consensus 122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l 201 (277)
T 1qqf_A 122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKF 201 (277)
T ss_dssp GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred CCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2335567777777755421 11 22467899999998764
Q ss_pred -----CCCccCCCCCC-CChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026041 116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (244)
Q Consensus 116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~ 189 (244)
+|.|...++.. .++..|.+++.++...+. ....+++++||.+.|+++|||.. ...|..||-||+-
T Consensus 202 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~ 272 (277)
T 1qqf_A 202 LNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQ 272 (277)
T ss_dssp HHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHH
Confidence 34443333210 134445555555544444 35688999999999999999964 3468788777764
No 18
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.60 E-value=7.8e-15 Score=129.62 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=126.7
Q ss_pred CHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCcc---CHHHHHHHHHhccCCCCCccCCCCC----
Q 026041 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGDIWG---- 125 (244)
Q Consensus 53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~q~~dGgf~~~~~~---- 125 (244)
..+++++||+++|++||||+.+++..++...|.+++.+|..+...-.+ .++++++||.+.|++||+|.+....
T Consensus 92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~ 171 (367)
T 1hzf_A 92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS 171 (367)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence 356788999999999999999988788889999999999887643222 3688999999999999999865221
Q ss_pred --------CCChhhHHHHHHHHHhhccC------------ChhhHHHHHHHHHhc--CC---------------------
Q 026041 126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC--KN--------------------- 162 (244)
Q Consensus 126 --------~~d~~~ty~al~~l~~l~~~------------~~~~~e~~~~~i~~~--Q~--------------------- 162 (244)
++++..|.+++.+|...+.. ....++++++||.+. ++
T Consensus 172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~ 251 (367)
T 1hzf_A 172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPA 251 (367)
T ss_dssp GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCH
T ss_pred ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcH
Confidence 12344455566666544421 123567888998665 21
Q ss_pred ---------------CCCC---CCCCC---------------------CCC-cchhHHHHHHHHHHHhCCCCCCCHHHHH
Q 026041 163 ---------------LDGG---FGCTP---------------------GGE-SHSGQIFCCVGALAIAGALHHVDKDLLG 202 (244)
Q Consensus 163 ---------------~dGG---f~~~p---------------------~~~-~~~~~T~~al~aL~~l~~~~~~~~~~~~ 202 (244)
.+|+ |.... ... .++..|.|||-+|...+. +....++.+
T Consensus 252 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv 330 (367)
T 1hzf_A 252 DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQAS 330 (367)
T ss_dssp HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHH
Confidence 1344 54321 112 267889999988876542 234578899
Q ss_pred HHHHcccccCccccCCCCCCCCccccchhhHhhhhhhhcc
Q 026041 203 WWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRSS 242 (244)
Q Consensus 203 ~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~~ 242 (244)
+||.+.|+.+|||.. +-.+..+|.+|..|....
T Consensus 331 ~WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y~~~~ 363 (367)
T 1hzf_A 331 AWLTRQGSFQGGFRS-------TQDTVIALDALSAYWIAS 363 (367)
T ss_dssp HHHHHHTTSTTCSCS-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCCccc-------HHHHHHHHHHHHHHHHHc
Confidence 999999999999963 355668888888886543
No 19
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.59 E-value=3.7e-14 Score=122.48 Aligned_cols=175 Identities=15% Similarity=0.128 Sum_probs=121.3
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026041 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (244)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (244)
+.++.+.++|++||+|..|..+++..+.|.+++.+|..+.... ....+++++||.+ .|++||+|....+.
T Consensus 58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~ 137 (310)
T 2wy7_A 58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 137 (310)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence 3444488899999999999888889999999999999887532 2246789999996 99999999765321
Q ss_pred -------CCchhhHHHHHHHHHHhcC-----CC--ccCHHHHHHHHHhccCC----------------------------
Q 026041 78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE---------------------------- 115 (244)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~q~~---------------------------- 115 (244)
++++..|++++.+|...+. .+ ...++++++||.+++++
T Consensus 138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l 217 (310)
T 2wy7_A 138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF 217 (310)
T ss_dssp GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2335567777777765422 11 22467899999998764
Q ss_pred -----CCCccCCCCCC-CChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026041 116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (244)
Q Consensus 116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~ 189 (244)
+|.|...+... .++..|.+|+.++...+. ...++++++||.+.|+++|||.. ...|..||-||..
T Consensus 218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~ 288 (310)
T 2wy7_A 218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ 288 (310)
T ss_dssp HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence 23343332210 134455555555545554 35788999999999999999954 2567778777775
Q ss_pred hC
Q 026041 190 AG 191 (244)
Q Consensus 190 l~ 191 (244)
..
T Consensus 289 y~ 290 (310)
T 2wy7_A 289 YQ 290 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 20
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.47 E-value=1.1e-12 Score=115.92 Aligned_cols=177 Identities=17% Similarity=0.167 Sum_probs=117.8
Q ss_pred HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCCCC-----
Q 026041 6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH----- 77 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~----- 77 (244)
++++++++.+.|++||+|..|..+.++.+.|.+++.+|..++.. +....+++++||.+.|++||+|......
T Consensus 93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~ 172 (367)
T 1hzf_A 93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM 172 (367)
T ss_dssp HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence 45778889999999999998887778889999999999888742 2235788999999999999999765221
Q ss_pred -------CCchhhHHHHHHHHHHhcCC--C----------ccCHHHHHHHHHhc--cC----------------------
Q 026041 78 -------DPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGL--QN---------------------- 114 (244)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~--q~---------------------- 114 (244)
++.+..|.+++.+|...+.. + ...++++++||.+. ++
T Consensus 173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~ 252 (367)
T 1hzf_A 173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPAD 252 (367)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHH
Confidence 23466778888887654421 1 11357788888665 21
Q ss_pred --------------CCCC---ccCCCC---------------------CC-CChhhHHHHHHHHHhhccCChhhHHHHHH
Q 026041 115 --------------EDGS---FSGDIW---------------------GE-VDTRFSYIAICCLSILQRLDKINVDKAVE 155 (244)
Q Consensus 115 --------------~dGg---f~~~~~---------------------~~-~d~~~ty~al~~l~~l~~~~~~~~e~~~~ 155 (244)
.+|+ |..... .. .++..|-+|+.++...+. +....+++++
T Consensus 253 ~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv~ 331 (367)
T 1hzf_A 253 LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQASA 331 (367)
T ss_dssp HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHHH
Confidence 1333 322100 01 134444444444433322 2345788999
Q ss_pred HHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026041 156 YIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (244)
Q Consensus 156 ~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l 190 (244)
||.+.|+.+|||.. ...|..||-||...
T Consensus 332 WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y 359 (367)
T 1hzf_A 332 WLTRQGSFQGGFRS-------TQDTVIALDALSAY 359 (367)
T ss_dssp HHHHHTTSTTCSCS-------HHHHHHHHHHHHHH
T ss_pred HHHhCcCCCCCccc-------HHHHHHHHHHHHHH
Confidence 99999999999964 24577777777643
No 21
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=2.9e-12 Score=129.61 Aligned_cols=179 Identities=11% Similarity=0.091 Sum_probs=124.4
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCc-cC---HHHHHHHHHhccCCCCCccCCCC-----
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADKVSNYIVGLQNEDGSFSGDIW----- 124 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~~~~~l~~~q~~dGgf~~~~~----- 124 (244)
.+.++++++++|++||||+.+++..++...|.+++.+|..+..... ++ ++++++||.+.|.+||+|.+...
T Consensus 874 i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~ 953 (1325)
T 2pn5_A 874 LRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKE 953 (1325)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHH
T ss_pred HHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChh
Confidence 4456667799999999999999999999999999999998865432 44 57899999999999999976432
Q ss_pred --CCCChhhHHHHHHHHHhh--ccC---ChhhHHHHHHHHHhcCCC-CCCCCCC--------------------------
Q 026041 125 --GEVDTRFSYIAICCLSIL--QRL---DKINVDKAVEYIVSCKNL-DGGFGCT-------------------------- 170 (244)
Q Consensus 125 --~~~d~~~ty~al~~l~~l--~~~---~~~~~e~~~~~i~~~Q~~-dGGf~~~-------------------------- 170 (244)
+..+.+.+|++.+..+++ +.. ....++++++||.+.|+. +++|+..
T Consensus 954 ~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~ 1033 (1325)
T 2pn5_A 954 MQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSF 1033 (1325)
T ss_dssp HHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCE
T ss_pred hcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhh
Confidence 122233444443322333 222 123567888898887654 5554211
Q ss_pred --C-------CCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhhc
Q 026041 171 --P-------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRS 241 (244)
Q Consensus 171 --p-------~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~ 241 (244)
. ...++...|.+|+.+|...+. .....+.++||.+.|..+|||.- +-.+.|+|.+|..|.++
T Consensus 1034 ~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y~~~ 1104 (1325)
T 2pn5_A 1034 IDADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKMAEK 1104 (1325)
T ss_dssp EETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHHHHH
T ss_pred hccCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHHHHH
Confidence 0 113466778888877766653 23467899999999988999952 34566889999888654
No 22
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.37 E-value=8.5e-12 Score=121.97 Aligned_cols=178 Identities=17% Similarity=0.153 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCC-----
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW----- 124 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~----- 124 (244)
.+.++++++++|++||||+.+++..++...|.+++.+|..+.....++ ++++++||.+ .|.+||+|.....
T Consensus 301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~ 380 (915)
T 2hr0_B 301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE 380 (915)
T ss_dssp HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence 345677899999999999999988899999999999998876543344 6889999995 9999999975321
Q ss_pred ---C-----CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhcCCC--------------------------
Q 026041 125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL-------------------------- 163 (244)
Q Consensus 125 ---~-----~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~Q~~-------------------------- 163 (244)
+ +.++..|..++.+|...+.. ....++++++||.+.+..
T Consensus 381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~ 460 (915)
T 2hr0_B 381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN 460 (915)
T ss_dssp CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 0 12333344455555544432 123567888888776432
Q ss_pred -------CCC-CCCCCCC-CcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHh
Q 026041 164 -------DGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLM 234 (244)
Q Consensus 164 -------dGG-f~~~p~~-~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~ 234 (244)
+|. |.. ++. ..+...|.+|+.+|...+.. ....+.++||.+.|+.+|||.. +-.+..+|.+
T Consensus 461 ~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~A 530 (915)
T 2hr0_B 461 KFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQA 530 (915)
T ss_dssp HHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHH
T ss_pred HHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHH
Confidence 232 322 222 13667889999888877653 4578899999999999999953 2335677888
Q ss_pred hhhhhhc
Q 026041 235 MEHSCRS 241 (244)
Q Consensus 235 l~~~~~~ 241 (244)
|..|..+
T Consensus 531 L~~y~~~ 537 (915)
T 2hr0_B 531 LAQYQKD 537 (915)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777643
No 23
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.22 E-value=1.1e-10 Score=118.62 Aligned_cols=220 Identities=8% Similarity=0.030 Sum_probs=142.9
Q ss_pred HHHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhcccCCCCcCCCC----
Q 026041 7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI---- 75 (244)
Q Consensus 7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~~q~~dGgf~~~~---- 75 (244)
++.++.+...|++||+|..|.. +.++.|.|.+++..|...... ++...+++++||.+.|++||.|....
T Consensus 986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A 986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence 4566677779999999998864 458899999999999987742 23357889999999999999997431
Q ss_pred -----CCCCchhhHHHHHHHHHHhcCCC-ccCHHHHHHHHHhccCC--CCCccCCCCCCCChhhHHHHHHHHHhhccCCh
Q 026041 76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK 147 (244)
Q Consensus 76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~q~~--dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~ 147 (244)
|.++++..|.+++.+|...+... ...++++++||.+.... +|. ...+.-...-+..+|++.|. .
T Consensus 1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~------~~~~~y~~AllAyAlal~g~--~ 1137 (1451)
T 4acq_A 1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGD------HGSHVYTKALLAYAFALAGN--Q 1137 (1451)
T ss_dssp GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSC------SSSTHHHHHHHHHHHHHHTC--H
T ss_pred hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhccccc------ccCChHHHHHHHHHHHhcCC--h
Confidence 12356778899999988776432 22368899999875221 110 00122212223344555664 2
Q ss_pred hhHHHHHHHHHhcCCCCCC---CCCCC------------C-CCcchhHHHHHHHHHHHhCCC----CCCCHHHHHHHHHc
Q 026041 148 INVDKAVEYIVSCKNLDGG---FGCTP------------G-GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE 207 (244)
Q Consensus 148 ~~~e~~~~~i~~~Q~~dGG---f~~~p------------~-~~~~~~~T~~al~aL~~l~~~----~~~~~~~~~~wL~~ 207 (244)
...+.+.+-|.+....+|| |.... . ...+...|.|||-+|..++.. +.......++||.+
T Consensus 1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A 1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 2234456666655555565 43321 1 124667899999777766531 11235678999999
Q ss_pred ccccCccccCCCCCCCCccccchhhHhhhhhhhc
Q 026041 208 RQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCRS 241 (244)
Q Consensus 208 ~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~ 241 (244)
.|+..|||.. +=.+..+|.+|..|..+
T Consensus 1218 qr~~~Ggf~S-------TQdTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A 1218 QQNAQGGFSS-------TQDTVVALHALSKYGAA 1244 (1451)
T ss_dssp CCCTTSCCSS-------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccc-------HHHHHHHHHHHHHHHHh
Confidence 9999999963 22456777788777664
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.16 E-value=5.2e-10 Score=109.36 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=116.1
Q ss_pred HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCCCC------
Q 026041 8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNIGH------ 77 (244)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~~~------ 77 (244)
+.++.++..|++||+|..|...++..|.|.+++..|..+.... ....+++++||.+ .|++||.|......
T Consensus 303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~ 382 (915)
T 2hr0_B 303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI 382 (915)
T ss_dssp HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc
Confidence 3445567789999999999888889999999999998886432 2347789999995 99999999654221
Q ss_pred -------CCchhhHHHHHHHHHHhcCC-----Cc--cCHHHHHHHHHhccCC----------------------------
Q 026041 78 -------DPHVLYTLSAVQVLALFDKV-----DI--LDADKVSNYIVGLQNE---------------------------- 115 (244)
Q Consensus 78 -------~~~~~~T~~al~~L~~l~~~-----~~--~~~~~~~~~l~~~q~~---------------------------- 115 (244)
++.+..|.+++.+|...+.. +. ..++++++||.+.+..
T Consensus 383 gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L 462 (915)
T 2hr0_B 383 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF 462 (915)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 23455677777777665432 11 1256788888876543
Q ss_pred -----CCCccCCCCC-CCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 026041 116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI 189 (244)
Q Consensus 116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~ 189 (244)
+|.|...+.. ..++..|.+|+.++...+.. ....+.++||.+.|+.+|||.. ...|..|+-||..
T Consensus 463 ~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~AL~~ 533 (915)
T 2hr0_B 463 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ 533 (915)
T ss_dssp HHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHH
Confidence 2222111111 01344555555555555543 3578899999999999999963 2447777777765
Q ss_pred h
Q 026041 190 A 190 (244)
Q Consensus 190 l 190 (244)
.
T Consensus 534 y 534 (915)
T 2hr0_B 534 Y 534 (915)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.06 E-value=9.7e-10 Score=96.74 Aligned_cols=159 Identities=17% Similarity=0.044 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcccCCCCcCCCCC--------------------------------------CCCchhhHHHHHHHHHHhc
Q 026041 54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD 95 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~ 95 (244)
-+++.+.|+..|+++|||..... .+.+...|..++.+|..+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 56789999999999999976321 1123356888888887653
Q ss_pred CC-C--c-----cCHHHHHHHHHhccCCCCCccCCC-CCC--------CChhhHHHHHHHHHhhccC-------------
Q 026041 96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGDI-WGE--------VDTRFSYIAICCLSILQRL------------- 145 (244)
Q Consensus 96 ~~-~--~-----~~~~~~~~~l~~~q~~dGgf~~~~-~~~--------~d~~~ty~al~~l~~l~~~------------- 145 (244)
.. . . --+.++++||.+.|.+||||.... ... .| -.|--++..|..++.-
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~ 241 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT 241 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence 32 1 1 125789999999999999997532 110 12 1122234444444331
Q ss_pred -ChhhHHHHHHHHHhcCCC-CCCCCCCCC------C---------Cc---chhHHHHHHHHHHHhCCCCCC-----CHHH
Q 026041 146 -DKINVDKAVEYIVSCKNL-DGGFGCTPG------G---------ES---HSGQIFCCVGALAIAGALHHV-----DKDL 200 (244)
Q Consensus 146 -~~~~~e~~~~~i~~~Q~~-dGGf~~~p~------~---------~~---~~~~T~~al~aL~~l~~~~~~-----~~~~ 200 (244)
....++|+++||++.|.+ ||.|- +-+ . |+ .+..|..+|.. +|....+. .+++
T Consensus 242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~--LM~~~~~~~~~~~aI~~ 318 (408)
T 1r76_A 242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLF--LMEIEAPSDAVKQAIRG 318 (408)
T ss_dssp HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHH--HTTSSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHH--HccCCCCCHHHHHHHHH
Confidence 123578999999999999 99886 311 0 11 11223333322 33322211 3789
Q ss_pred HHHHHHcccccCcccc
Q 026041 201 LGWWLCERQVKSGGLN 216 (244)
Q Consensus 201 ~~~wL~~~Q~~~GGf~ 216 (244)
+++||.++|.++|+|.
T Consensus 319 Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 319 GVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHSCCCC----
T ss_pred HHHHHHHhhcCCCcee
Confidence 9999999999999865
No 26
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.96 E-value=4.1e-09 Score=106.71 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=111.4
Q ss_pred HHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHhcccCCCCcCCCCC---------
Q 026041 10 VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILKCQDESGGFAGNIG--------- 76 (244)
Q Consensus 10 ~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~----~~~~~~~~i~~l~~~q~~dGgf~~~~~--------- 76 (244)
++-+.++|++||+|..|..+++..|.|.+++.+|..+... +....+++++||.+.|++||.|.....
T Consensus 878 ~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~ 957 (1325)
T 2pn5_A 878 YQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGG 957 (1325)
T ss_dssp HHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCC
T ss_pred HHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCc
Confidence 3344779999999999998889999999999999988542 122467899999999999999865321
Q ss_pred CCCchhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCC-CCCccC-----------CC------------------
Q 026041 77 HDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNE-DGSFSG-----------DI------------------ 123 (244)
Q Consensus 77 ~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~-dGgf~~-----------~~------------------ 123 (244)
.......|++++.+|...+.. ....++++++||.+.+.. +++|.. .+
T Consensus 958 ~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~ 1037 (1325)
T 2pn5_A 958 LRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDAD 1037 (1325)
T ss_dssp SSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETT
T ss_pred ccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccC
Confidence 112344455555554322211 112356788888887765 555421 00
Q ss_pred ------CCCCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHh
Q 026041 124 ------WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA 190 (244)
Q Consensus 124 ------~~~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l 190 (244)
...++++.|-+++.+|...+. ....++.+.||.+.|+.+|||.. ...|.+||-||...
T Consensus 1038 ~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A 1038 KNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp TTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHH
T ss_pred CCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHH
Confidence 012344555444444433343 34567889999999999999953 34577777777654
No 27
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.93 E-value=3e-09 Score=93.64 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcccCCCCcccccc--------------------------------------ccchHHHHHHHHHHHHhhC
Q 026041 6 ADKHVKYIISVEKKKDSFESVVM--------------------------------------EHLRLNGAYWGLTTLDILG 47 (244)
Q Consensus 6 ~~~~~~yl~~~q~~dg~~~~~~~--------------------------------------~~~~~~~~y~al~~l~llg 47 (244)
.++..+.|..-|+++|+|..... ...|...|.-++..|.-+.
T Consensus 83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~ 162 (408)
T 1r76_A 83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV 162 (408)
T ss_dssp HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence 45677889999999999953110 1123344666666665543
Q ss_pred CC----C----CcCHHHHHHHHHhcccCCCCcCCCCCC----CCch----hhHHHHHHHHHHhcC----CC---------
Q 026041 48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGH----DPHV----LYTLSAVQVLALFDK----VD--------- 98 (244)
Q Consensus 48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~----~~~~----~~T~~al~~L~~l~~----~~--------- 98 (244)
.. . ....+++++||+++|+++|||+.+.-. ..++ ..|.-+|..|..+.. +.
T Consensus 163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 21 1 124678999999999999999887431 1111 245556666655532 11
Q ss_pred -ccCHHHHHHHHHhccCC-CCCccCCCCC---------------CC-ChhhHHHHHHHHHhhccCC--h---hhHHHHHH
Q 026041 99 -ILDADKVSNYIVGLQNE-DGSFSGDIWG---------------EV-DTRFSYIAICCLSILQRLD--K---INVDKAVE 155 (244)
Q Consensus 99 -~~~~~~~~~~l~~~q~~-dGgf~~~~~~---------------~~-d~~~ty~al~~l~~l~~~~--~---~~~e~~~~ 155 (244)
...++++++||++.|.+ ||+|. +++. |. -+...=.+-.++.++.... + ..++++++
T Consensus 243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~ 321 (408)
T 1r76_A 243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA 321 (408)
T ss_dssp HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 11358899999999999 99986 4321 10 1111111212222333222 1 25899999
Q ss_pred HHHhcCCCCCCCC
Q 026041 156 YIVSCKNLDGGFG 168 (244)
Q Consensus 156 ~i~~~Q~~dGGf~ 168 (244)
||.++|++||+|-
T Consensus 322 WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 322 WLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHSCCCC----
T ss_pred HHHHhhcCCCcee
Confidence 9999999999997
No 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.89 E-value=3.5e-08 Score=101.80 Aligned_cols=205 Identities=13% Similarity=0.131 Sum_probs=129.6
Q ss_pred HHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-cccCCCCcCCCC--------C----
Q 026041 13 IISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNI--------G---- 76 (244)
Q Consensus 13 l~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~--------~---- 76 (244)
++..|++||+|..|.+.+++.|.|.|++..|..+.... ....+++++||.+ .|+++|.|.... +
T Consensus 1055 ~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~ 1134 (1661)
T 2b39_A 1055 QLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRD 1134 (1661)
T ss_dssp HHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTC
T ss_pred HHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCccc
Confidence 44578899999999888889999999999998876532 2346789999995 999999985431 1
Q ss_pred -CCCchhhHHHHHHHHHHhcCC-----Ccc--CHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCChh
Q 026041 77 -HDPHVLYTLSAVQVLALFDKV-----DIL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI 148 (244)
Q Consensus 77 -~~~~~~~T~~al~~L~~l~~~-----~~~--~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~ 148 (244)
.++++..|.+++.+|...+.. ... .+.++++||.+.... + .++-....+..+|.+.|..
T Consensus 1135 ~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~--- 1201 (1661)
T 2b39_A 1135 TREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL--- 1201 (1661)
T ss_dssp CTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC---
T ss_pred cccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc---
Confidence 112555667777777654432 111 256788999775332 1 1111111122344555653
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHcccccCccccCCCCCCCCcccc
Q 026041 149 NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIF 228 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys 228 (244)
.+++++.|.+.......|....+...+...|.+|+.++...+.. ......++||.+.|+..|||..- .| +
T Consensus 1202 -a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~~--~~~~~iv~wL~~qr~~~gg~~ST----qd---T 1271 (1661)
T 2b39_A 1202 -EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKDY--DTTPPVVRWLNEQRYYGGGYGST----QA---T 1271 (1661)
T ss_dssp -CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT--TTSHHHHHHHHHCCTBTTBBCSH----HH---H
T ss_pred -HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCcccc----hH---H
Confidence 24556666654442223432111123567888888888777643 44678899999988888999642 22 3
Q ss_pred chhhHhhhhhhh
Q 026041 229 SQPNLMMEHSCR 240 (244)
Q Consensus 229 ~~~l~~l~~~~~ 240 (244)
..+|.+|..|..
T Consensus 1272 ~~Al~AL~~y~~ 1283 (1661)
T 2b39_A 1272 FMVFQALAQYQK 1283 (1661)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467777777753
No 29
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.89 E-value=7.4e-08 Score=92.51 Aligned_cols=210 Identities=13% Similarity=0.089 Sum_probs=123.8
Q ss_pred HHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcccCCCCcCCCC--------C----
Q 026041 12 YIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNI--------G---- 76 (244)
Q Consensus 12 yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~---~~~~~~~i~~l~~~q~~dGgf~~~~--------~---- 76 (244)
-+.+.|++||+|..|++.+++.|.|.|++.+|....... +....+.+.||.+.|.+||.|.... +
T Consensus 376 rll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~ 455 (767)
T 4fxk_B 376 RIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG 455 (767)
T ss_dssp HHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTT
T ss_pred HHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCC
Confidence 344578899999999988899999999999999887643 2346678899999999999996431 1
Q ss_pred CCCchhhHHHHHHHHHHhcCCC-----c-------cCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-HHHHHHhhc
Q 026041 77 HDPHVLYTLSAVQVLALFDKVD-----I-------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICCLSILQ 143 (244)
Q Consensus 77 ~~~~~~~T~~al~~L~~l~~~~-----~-------~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~-al~~l~~l~ 143 (244)
.+.++..|++++.+|...+... . ..+.++++||.+....+ + .+. |+-+ +.-+|.+.+
T Consensus 456 ~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~-------~~~-y~~Al~ayaL~l~~ 525 (767)
T 4fxk_B 456 NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L-------LGA-HAAAITAYALSLTK 525 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C-------CCH-HHHHHHHHHHHHHT
T ss_pred CccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c-------CCH-HHHHHHHHHHHHcC
Confidence 1224455666666665433211 0 12466788887654321 1 111 1111 112344444
Q ss_pred cCChhhHHHHHHHHHhcCCCCCC--CCCCC-C---------------------C-CcchhHHHHHHHHHHHhCCCCCCCH
Q 026041 144 RLDKINVDKAVEYIVSCKNLDGG--FGCTP-G---------------------G-ESHSGQIFCCVGALAIAGALHHVDK 198 (244)
Q Consensus 144 ~~~~~~~e~~~~~i~~~Q~~dGG--f~~~p-~---------------------~-~~~~~~T~~al~aL~~l~~~~~~~~ 198 (244)
.. ....+.+.+-+...-..+|+ +-..+ + . ..++..|.+||-++..... +....
T Consensus 526 ~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~-~~~~a 603 (767)
T 4fxk_B 526 AP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMA 603 (767)
T ss_dssp CT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS-SCHHH
T ss_pred Cc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCC-chhHH
Confidence 32 12233444455543332222 11111 0 0 1135678888866654432 23346
Q ss_pred HHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026041 199 DLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 199 ~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
+..++||.+.|+..|||.. +--+.++|.+|..|..
T Consensus 604 ~~iv~WL~~Qr~~~Ggf~S-------TQdTv~AL~ALa~y~~ 638 (767)
T 4fxk_B 604 DQASAWLTRQGSFQGGFRS-------TQDTVIALDALSAYWI 638 (767)
T ss_dssp HHHHHHHHHTCCTTSSCSS-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCcC-------HHHHHHHHHHHHHHHH
Confidence 7899999998899999953 1234577777777753
No 30
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.82 E-value=7.4e-09 Score=88.74 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=95.0
Q ss_pred HHHHHHHhcccCCCCcCCCCC-------------CCCchhhHHHHHHHHHHhcCCC-----ccCHHHHHHHHHhccCCCC
Q 026041 56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG 117 (244)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~q~~dG 117 (244)
.+.+.|+..|+++|||...-. .+++...|..+|.+|..+.... +-.++++++||.+.|.+||
T Consensus 35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG 114 (332)
T 1gxm_A 35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG 114 (332)
T ss_dssp GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence 458889999999999987421 2346677889998887653211 1125789999999999999
Q ss_pred CccCC-CCC--------CCChhhHHHHHHHHHhhcc----C------------ChhhHHHHHHHHHhcCCCCCCCCCCCC
Q 026041 118 SFSGD-IWG--------EVDTRFSYIAICCLSILQR----L------------DKINVDKAVEYIVSCKNLDGGFGCTPG 172 (244)
Q Consensus 118 gf~~~-~~~--------~~d~~~ty~al~~l~~l~~----~------------~~~~~e~~~~~i~~~Q~~dGGf~~~p~ 172 (244)
||... +.. -.| -.|--++..|..++. . ....++|+++||++.|.++|||-.+-+
T Consensus 115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg 193 (332)
T 1gxm_A 115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC 193 (332)
T ss_dssp CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence 99863 211 012 123334454544432 0 123578999999999999998854421
Q ss_pred CCcchhHHH----------------HHHHHHH-HhCCCCCC----CHHHHHHHHHcccc
Q 026041 173 GESHSGQIF----------------CCVGALA-IAGALHHV----DKDLLGWWLCERQV 210 (244)
Q Consensus 173 ~~~~~~~T~----------------~al~aL~-~l~~~~~~----~~~~~~~wL~~~Q~ 210 (244)
. -|.+.|. -++..+. +++..... .++++++||.++|+
T Consensus 194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence 1 1111121 1222223 33332211 27899999999998
No 31
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.69 E-value=2.2e-09 Score=92.02 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=96.2
Q ss_pred HHHHHHcccCCCCcccc-------------ccccchHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhcccCCCCc
Q 026041 10 VKYIISVEKKKDSFESV-------------VMEHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGF 71 (244)
Q Consensus 10 ~~yl~~~q~~dg~~~~~-------------~~~~~~~~~~y~al~~l~llg~~--~---~~~~~~~i~~l~~~q~~dGgf 71 (244)
.+-|..-|+++|||... .....|...|.-++..|+-+... . ....+++++||+++|.++|||
T Consensus 37 Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGW 116 (332)
T 1gxm_A 37 ADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGAL 116 (332)
T ss_dssp HHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCC
T ss_pred HHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCc
Confidence 56778899999999641 11234555677777777654321 1 234678999999999999999
Q ss_pred CCCCCC----CCch----hhHHHHHHHHHHhcC----CC------------ccCHHHHHHHHHhccCCCCCccCCCCC--
Q 026041 72 AGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWG-- 125 (244)
Q Consensus 72 ~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~q~~dGgf~~~~~~-- 125 (244)
+.+.-. ..++ ..|.-+|..|..+.. ++ ...++++++||++.|.++|||.+++..
T Consensus 117 pqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~qy 196 (332)
T 1gxm_A 117 PQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCAQH 196 (332)
T ss_dssp BSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEE
T ss_pred cccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecccc
Confidence 987321 1111 356667777777642 21 113588999999999999998766432
Q ss_pred -------------CCChhhHHHHHHHHH-hhccCChh----hHHHHHHHHHhcCCC
Q 026041 126 -------------EVDTRFSYIAICCLS-ILQRLDKI----NVDKAVEYIVSCKNL 163 (244)
Q Consensus 126 -------------~~d~~~ty~al~~l~-~l~~~~~~----~~e~~~~~i~~~Q~~ 163 (244)
|+..-.+.-++.++. +.+..... .++++++|+.++|++
T Consensus 197 dygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~ 252 (332)
T 1gxm_A 197 GALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY 252 (332)
T ss_dssp CTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred ccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence 111111111222222 22322212 489999999999984
No 32
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.68 E-value=1.3e-07 Score=97.81 Aligned_cols=214 Identities=14% Similarity=0.058 Sum_probs=129.1
Q ss_pred HHHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHh-cccCCCCcCCC
Q 026041 6 ADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILK-CQDESGGFAGN 74 (244)
Q Consensus 6 ~~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~---~~~~~~~~i~~l~~-~q~~dGgf~~~ 74 (244)
+++.++++. +.|++||+|..|.+.+++.|.|.|++..|..+... +....+++++||.+ .|++||.|...
T Consensus 1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 445666644 46789999999977788999999999999877642 22346789999999 99999998543
Q ss_pred CC--------C------CCchhhHHHHHHHHHHhcCC---C--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-
Q 026041 75 IG--------H------DPHVLYTLSAVQVLALFDKV---D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI- 134 (244)
Q Consensus 75 ~~--------~------~~~~~~T~~al~~L~~l~~~---~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~- 134 (244)
.. . ++++..|++++.+|...+.. . ...+.++++||.+.... + .++ ++-+
T Consensus 1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~-y~~A~ 1190 (1676)
T 3cu7_A 1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QST-FTLAI 1190 (1676)
T ss_dssp SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCH-HHHHH
T ss_pred ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCH-HHHHH
Confidence 11 0 01344556666666543321 0 11256788999775332 1 111 1211
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHhcCCCCC------CCCCCC------C---C-CcchhHHHHHHHHHHHhCCCCCCCH
Q 026041 135 AICCLSILQRLDKINVDKAVEYIVSCKNLDG------GFGCTP------G---G-ESHSGQIFCCVGALAIAGALHHVDK 198 (244)
Q Consensus 135 al~~l~~l~~~~~~~~e~~~~~i~~~Q~~dG------Gf~~~p------~---~-~~~~~~T~~al~aL~~l~~~~~~~~ 198 (244)
+..+|.+.|... ...+++++.|.+....+| -|...+ + . ..+...|.+|+-++...+ +....
T Consensus 1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A 1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence 122334445422 124566677766443222 232221 0 1 125567888887776654 22346
Q ss_pred HHHHHHHHcccccCccccCCCCCCCCccccchhhHhhhhhhh
Q 026041 199 DLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMMEHSCR 240 (244)
Q Consensus 199 ~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l~~~~~ 240 (244)
.+.++||.+.|+..|||..- .|+. ++|.+|..|..
T Consensus 1268 ~~iv~wL~~qr~~~Gg~~ST----QdT~---~Al~AL~~y~~ 1302 (1676)
T 3cu7_A 1268 NPVIKWLSEEQRYGGGFYST----QDTI---NAIEGLTEYSL 1302 (1676)
T ss_dssp HHHHHHHHHHSCSSSCCSTT----TTHH---HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCcccc----HHHH---HHHHHHHHHHH
Confidence 67899999988888999743 2333 77777877754
No 33
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=98.63 E-value=3.6e-09 Score=108.33 Aligned_cols=206 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHh-cccCCCCcCCC
Q 026041 7 DKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAGN 74 (244)
Q Consensus 7 ~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~llg~~----~~~~~~~~i~~l~~-~q~~dGgf~~~ 74 (244)
+++.+||+ +.|++||+|..|.+.++..|.|.|++.+|...... ++....++++||.+ +|++||.|...
T Consensus 1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 34555554 36789999999988788999999999999876642 23357889999997 89999999653
Q ss_pred C--------C----CCCchhhHHHHHHHHHHhcCC-----C--ccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHH-
Q 026041 75 I--------G----HDPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI- 134 (244)
Q Consensus 75 ~--------~----~~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~- 134 (244)
. | .+.++.-|.+.+.+|...+.. . ...+++++.||.+.... +...|.
T Consensus 1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-------------~~~~Y~~ 1172 (1642)
T 3prx_B 1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-------------LQRPYTT 1172 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-------------CCCHHHH
Confidence 2 1 134566666666665433321 0 12367788888764221 111221
Q ss_pred HHH--HHHhhccCChhhHHHHHHHHHhcCCCCCCCCCCCC-CCcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHccccc
Q 026041 135 AIC--CLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK 211 (244)
Q Consensus 135 al~--~l~~l~~~~~~~~e~~~~~i~~~Q~~dGGf~~~p~-~~~~~~~T~~al~aL~~l~~~~~~~~~~~~~wL~~~Q~~ 211 (244)
|++ +|.+.+... .+.+..+. ..++-+-..|+ ...++..|.|||-++...+. .......++||.+.|+.
T Consensus 1173 Ai~aYAl~l~~~~~---~~~l~~l~----~~~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~ 1243 (1642)
T 3prx_B 1173 ALTAYALAAADQLN---DDRVLMAA----STGRDHWEEYNAHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY 1243 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCch---HHHHHHHH----hcCCCCCCCCCCchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC
Confidence 111 122334321 11111111 11222222333 23578899999977766543 34567889999999999
Q ss_pred CccccCCCCCCCCccccchhhHhhhhhhhc
Q 026041 212 SGGLNGRPEKLPDVGIFSQPNLMMEHSCRS 241 (244)
Q Consensus 212 ~GGf~~~~~~~~d~~ys~~~l~~l~~~~~~ 241 (244)
.|||..-- | +..+|.+|..|..+
T Consensus 1244 ~Ggf~STQ----d---TvvaLqALa~Y~~~ 1266 (1642)
T 3prx_B 1244 GETYGQTQ----A---TVMAFQALAEYEIQ 1266 (1642)
T ss_dssp ------------------------------
T ss_pred CCcccCcH----H---HHHHHHHHHHHHHh
Confidence 99997432 3 34567777776654
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.60 E-value=1.3e-06 Score=88.99 Aligned_cols=155 Identities=16% Similarity=0.063 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcccCCCCcCCCCC----CCCchhhHHHHHHHHHHhcCC---CccCHHHHHHHHHhccCCCCCccCC--C-
Q 026041 54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGD--I- 123 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~q~~dGgf~~~--~- 123 (244)
.+++++|++++|++||||+.+++ ..++..-|.+++.+|..+... +...++++++||.+.|++||+|... .
T Consensus 985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A 985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence 45678999999999999998864 457889999999999887653 2223688999999999999999742 1
Q ss_pred -----CC-CCChhhHHHHHHHHHhhccC-ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCCC
Q 026041 124 -----WG-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV 196 (244)
Q Consensus 124 -----~~-~~d~~~ty~al~~l~~l~~~-~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~~ 196 (244)
++ +.++..|..++.+|...|.. ....++++++||.+.-.. +.. .....+++..+..-.||++++.. .
T Consensus 1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~~--~ 1138 (1451)
T 4acq_A 1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGNQ--D 1138 (1451)
T ss_dssp CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTCH--H
T ss_pred chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCCh--h
Confidence 11 23454566667777666653 234688999999865210 100 01123445555555567777642 1
Q ss_pred CHHHHHHHHHcccccCcc
Q 026041 197 DKDLLGWWLCERQVKSGG 214 (244)
Q Consensus 197 ~~~~~~~wL~~~Q~~~GG 214 (244)
..+.+++=|.+....+||
T Consensus 1139 ~~~~~l~~L~~~a~~~~~ 1156 (1451)
T 4acq_A 1139 KRKEVLKSLNEEAVKKDN 1156 (1451)
T ss_dssp HHHHHHHHHHHHCCBCSS
T ss_pred HHHHHHHHHHHHhhccCC
Confidence 234455666555555666
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.49 E-value=7.9e-07 Score=78.66 Aligned_cols=134 Identities=14% Similarity=0.032 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCC-c----cCHHHHH-
Q 026041 33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-I----LDADKVS- 106 (244)
Q Consensus 33 ~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~----~~~~~~~- 106 (244)
....-|++.+|-..|... .++.+..|...|+ +++|. .+...++..|..|+++|..+++.. . ..+++++
T Consensus 136 ~Yq~sL~vLALC~~g~~v---~~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~ 209 (414)
T 2bb6_A 136 YYQYSLGILALCVHQKRV---HDSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALK 209 (414)
T ss_dssp HHHHHHHHHHHHHTTCCC---CHHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCc---cHHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Confidence 344556777777777654 4567777777665 45553 223457899999999998886421 1 1144444
Q ss_pred ---HHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccCCh---hhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHH
Q 026041 107 ---NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180 (244)
Q Consensus 107 ---~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~---~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T 180 (244)
++|.+.|++||+|+ ++.+|-.|+.+|...+.... .+..+++++|++ |.+||+|. ++-.|
T Consensus 210 ~l~~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~at 274 (414)
T 2bb6_A 210 RVQEKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMI 274 (414)
T ss_dssp HHHHHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHH
T ss_pred HHHHHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHH
Confidence 88889999999997 35667778888877776322 266789999999 99999996 33456
Q ss_pred HHHHHHH
Q 026041 181 FCCVGAL 187 (244)
Q Consensus 181 ~~al~aL 187 (244)
.-++-+|
T Consensus 275 aQ~lpaL 281 (414)
T 2bb6_A 275 SQLLPVL 281 (414)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555443
No 36
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.25 E-value=2.5e-05 Score=80.76 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=91.3
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCC--------
Q 026041 56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDI-------- 123 (244)
Q Consensus 56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~-------- 123 (244)
.+++-+++.|++||||+.+++.+++..-|.+++.+|..+...-.++ +.++++||.+ .|.+||.|....
T Consensus 1050 ~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~ 1129 (1661)
T 2b39_A 1050 KGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMI 1129 (1661)
T ss_dssp HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSC
T ss_pred HHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhc
Confidence 3455567889999999999988899999999999998887653343 5789999995 999999996321
Q ss_pred C-----CCCChhhHHHHHHHHHhhccC-----C--hhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhC
Q 026041 124 W-----GEVDTRFSYIAICCLSILQRL-----D--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191 (244)
Q Consensus 124 ~-----~~~d~~~ty~al~~l~~l~~~-----~--~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~ 191 (244)
+ .+.++..|..++.+|...+.. . ...++++++||.+.... + .+++.....-.+|.+++
T Consensus 1130 gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A 1130 GGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp CCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTT
T ss_pred CCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcC
Confidence 1 112454444455555444332 1 23567899999875321 1 23333333334556666
Q ss_pred CCCCCCHHHHHHHHHcccc
Q 026041 192 ALHHVDKDLLGWWLCERQV 210 (244)
Q Consensus 192 ~~~~~~~~~~~~wL~~~Q~ 210 (244)
.. .+++++.|.+...
T Consensus 1200 ~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A 1200 KL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp CC----CHHHHHHHHHHSB
T ss_pred Cc----HHHHHHHHHhhcc
Confidence 43 4666777766543
No 37
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.23 E-value=4.1e-06 Score=74.11 Aligned_cols=129 Identities=14% Similarity=0.042 Sum_probs=81.5
Q ss_pred HHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--C---hhhHHHHH----HH
Q 026041 86 SAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--D---KINVDKAV----EY 156 (244)
Q Consensus 86 ~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~---~~~~e~~~----~~ 156 (244)
.++.+|...+. .+ ....+.+|...|. +++|... +..|+-.+-.|+.+|..++.- . ...+++++ ++
T Consensus 141 L~vLALC~~g~--~v-~~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~ 214 (414)
T 2bb6_A 141 LGILALCVHQK--RV-HDSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK 214 (414)
T ss_dssp HHHHHHHHTTC--CC-CHHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--Cc-cHHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence 35556655554 22 2446666666665 3455421 123555566666666666541 1 12345555 88
Q ss_pred HHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCCC---CCHHHHHHHHHcccccCccccCCCCCCCCccccchhhH
Q 026041 157 IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNL 233 (244)
Q Consensus 157 i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~~---~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~ 233 (244)
|++.|++||+|+ +.+.|..|+.+|...+.... ++..++++||++ |.++|+|+ ++--+.++|-
T Consensus 215 l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~lp 279 (414)
T 2bb6_A 215 ILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQLLP 279 (414)
T ss_dssp HHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHHHH
T ss_pred HHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHHHH
Confidence 889999999996 45569999999988875322 355679999998 99999997 3344555554
Q ss_pred hh
Q 026041 234 MM 235 (244)
Q Consensus 234 ~l 235 (244)
+|
T Consensus 280 aL 281 (414)
T 2bb6_A 280 VL 281 (414)
T ss_dssp HT
T ss_pred Hh
Confidence 44
No 38
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.12 E-value=0.00016 Score=69.23 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhhCCC---CCcC-------HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCcc
Q 026041 31 LRLNGAYWGLTTLDILGKL---DAVD-------EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL 100 (244)
Q Consensus 31 ~~~~~~y~al~~l~llg~~---~~~~-------~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~ 100 (244)
+.+.-..|++..|...+.. .+.. .+.+++-+++.|++||||+++++.+++..-|.+++.+|..+...-.+
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~i 416 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGG 416 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSC
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCc
Confidence 3444456777777766652 2222 33455667788999999999999999999999999999988765444
Q ss_pred C---HHHHHHHHHhccCCCCCccC
Q 026041 101 D---ADKVSNYIVGLQNEDGSFSG 121 (244)
Q Consensus 101 ~---~~~~~~~l~~~q~~dGgf~~ 121 (244)
| +..++.||.+.|.+||+|..
T Consensus 417 d~~~i~~a~~wL~~~Q~~~G~f~e 440 (767)
T 4fxk_B 417 SPEKLQETSNWLLSQQQADGSFQD 440 (767)
T ss_dssp CHHHHHHHHHHHHHTBCTTSCBCC
T ss_pred chHHHHHHHHHHHHhhhhcccchh
Confidence 4 57788999999999999964
No 39
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.96 E-value=2.8e-05 Score=68.45 Aligned_cols=112 Identities=12% Similarity=0.016 Sum_probs=77.2
Q ss_pred HHHHHHHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhcc---CC---------hhhHHHHHHHHHhcCCCCCCCCC
Q 026041 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKAVEYIVSCKNLDGGFGC 169 (244)
Q Consensus 102 ~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~---~~---------~~~~e~~~~~i~~~Q~~dGGf~~ 169 (244)
....+.-|...|+.||+ + .++-.+..|+.+|..+.. .. ...+++++++|++.|++||+|+
T Consensus 132 ~~~~v~kLl~~~~~~g~----~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG- 203 (399)
T 2pmv_A 132 TLPIAVRFAKTLLANSS----P---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG- 203 (399)
T ss_dssp HHHHHHHHHHHHHHCCS----C---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred CHHHHHHHHHHHHccCC----c---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence 45566667777777742 1 134434444555544433 11 1246788999999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHhCCC--CCCCHHHHHHHHHcccccCccccCCCCCCCCccccchhhHhh
Q 026041 170 TPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGIFSQPNLMM 235 (244)
Q Consensus 170 ~p~~~~~~~~T~~al~aL~~l~~~--~~~~~~~~~~wL~~~Q~~~GGf~~~~~~~~d~~ys~~~l~~l 235 (244)
+.+.|.-|+.+|...+.. ..++..++++||++ |..+|+|+ ++--+.+.|-+|
T Consensus 204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQilPaL 257 (399)
T 2pmv_A 204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQILPSL 257 (399)
T ss_dssp ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHHHHH
T ss_pred ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHHHHh
Confidence 688899999999999863 33578889999998 99999996 344455555444
No 40
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.80 E-value=0.00018 Score=74.45 Aligned_cols=141 Identities=13% Similarity=0.060 Sum_probs=86.9
Q ss_pred HHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccC---HHHHHHHHHh-ccCCCCCccCCCC-------CC
Q 026041 58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-------GE 126 (244)
Q Consensus 58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~q~~dGgf~~~~~-------~~ 126 (244)
++-+++.|++||||+.+.+..++..-|.+++.+|..+...-.++ +.++++||.+ .|.+||.|..... +.
T Consensus 1053 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg 1132 (1676)
T 3cu7_A 1053 MLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGT 1132 (1676)
T ss_dssp HHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSC
T ss_pred HHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCC
Confidence 33456789999999999888899999999999998886543343 5788999999 9999999964210 00
Q ss_pred -------CChhhHHHHHHHHHhhccC-----ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHhCCCC
Q 026041 127 -------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH 194 (244)
Q Consensus 127 -------~d~~~ty~al~~l~~l~~~-----~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al~aL~~l~~~~ 194 (244)
+++..|..++.+|...+.. ....++++++||.+.... + .+++.....-.+|.+++..
T Consensus 1133 ~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~lA~Al~l~g~~- 1201 (1676)
T 3cu7_A 1133 LPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QSTFTLAISAYALSLGDKT- 1201 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCHHHHHHHHHHHTTSCTT-
T ss_pred cccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHhcCCc-
Confidence 1333333344444433332 123567899999764321 1 2222222222334444432
Q ss_pred CCC-HHHHHHHHHcccc
Q 026041 195 HVD-KDLLGWWLCERQV 210 (244)
Q Consensus 195 ~~~-~~~~~~wL~~~Q~ 210 (244)
.. .+++++.|.+...
T Consensus 1202 -~~~a~~~l~~L~~~a~ 1217 (1676)
T 3cu7_A 1202 -HPQFRSIVSALKREAL 1217 (1676)
T ss_dssp -CHHHHHHHHHHHHHCE
T ss_pred -hhhHHHHHHHHHhhhh
Confidence 22 5667777777654
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.74 E-value=8.7e-05 Score=65.29 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=85.7
Q ss_pred HHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcC---CC--c-----c--CHHHHH
Q 026041 39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD--I-----L--DADKVS 106 (244)
Q Consensus 39 al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~--~-----~--~~~~~~ 106 (244)
++.+|-+.|.. ...+.+.-|...|+.||+ .-++..+..|+++|..+.+ .. . + -+++++
T Consensus 120 ~vLALC~~~~~---v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~ 189 (399)
T 2pmv_A 120 AILALCQKNSE---ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIV 189 (399)
T ss_dssp HHHHHHHHCHH---HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 34444455543 356777777788887742 2368888889998888765 11 0 1 147788
Q ss_pred HHHHhccCCCCCccCCCCCCCChhhHHHHHHHHHhhccC--ChhhHHHHHHHHHhcCCCCCCCCCCCCCCcchhHHHHHH
Q 026041 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCV 184 (244)
Q Consensus 107 ~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~e~~~~~i~~~Q~~dGGf~~~p~~~~~~~~T~~al 184 (244)
++|.+.|++||+|+ |+.+|--|+.+|...+.. ..-+..++.++|++ |..||+|+ ++-.|.-++
T Consensus 190 ~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQil 254 (399)
T 2pmv_A 190 EKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQIL 254 (399)
T ss_dssp HHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHH
T ss_pred HHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHH
Confidence 99999999999997 466777788888777752 12267889999999 99999996 344555555
Q ss_pred HHH
Q 026041 185 GAL 187 (244)
Q Consensus 185 ~aL 187 (244)
=+|
T Consensus 255 PaL 257 (399)
T 2pmv_A 255 PSL 257 (399)
T ss_dssp HHH
T ss_pred HHh
Confidence 333
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.04 E-value=9.2e-05 Score=76.20 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCC----CccCHHHHHHHHHh-ccCCCCCccCCC-----
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV----DILDADKVSNYIVG-LQNEDGSFSGDI----- 123 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~----~~~~~~~~~~~l~~-~q~~dGgf~~~~----- 123 (244)
.+.+++-+++.|++||||+.+.+.+++..-|.+++.+|....+. +...+.++++||.+ +|++||+|....
T Consensus 1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B 1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence 33455567778999999999987778899999999998877553 22236889999998 899999996421
Q ss_pred ---CC----CCChhhHHHHHHHHHhhccC-------ChhhHHHHHHHHHhc
Q 026041 124 ---WG----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC 160 (244)
Q Consensus 124 ---~~----~~d~~~ty~al~~l~~l~~~-------~~~~~e~~~~~i~~~ 160 (244)
++ +.++..|..++.+|.-.+.. ....+++++.||.+.
T Consensus 1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ---------------------------------------------------
T ss_pred hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 11 23444333333333222221 123578899999754
No 43
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.52 E-value=0.005 Score=59.20 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=63.5
Q ss_pred HHHHHHHHHHccc---CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCC--CCc
Q 026041 6 ADKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH--DPH 80 (244)
Q Consensus 6 ~~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~--~~~ 80 (244)
.++.++-+++..+ .||.++.. .+.++.|.|+..+=. ++..........++||+..|.+||+||..... .-.
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~~---S~S~YDTAWVAmvp~-~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 131 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESMI---TPSAYDTAWVARVPA-IDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR 131 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCCC---CCCHHHHHHHHTCBC-TTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCccc---ccCHHHhhHHheeec-CCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 3455666666654 45522212 355677999322212 22222224679999999999999999864321 124
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026041 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q 113 (244)
+.+|.+++.+|.--+. ....+++++.||.+.-
T Consensus 132 ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 132 LLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 7899999999876542 1223678888888753
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.09 E-value=0.0078 Score=57.61 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=60.9
Q ss_pred HHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCCCCcCCCCCCC--Cchh
Q 026041 7 DKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVL 82 (244)
Q Consensus 7 ~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~~~ 82 (244)
+..++-|++... .+|.. .+.++.|.|+..+ .-++..........++||+..|.+||+||...... -.+.
T Consensus 34 ~~~~~~i~~~~~~~~~g~~------S~S~YDTAWVamv-p~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~ 106 (785)
T 3s9v_A 34 ETLISEIKNMFRCMGYGET------NPSAYDTAWVARI-PAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRIL 106 (785)
T ss_dssp HHHHHHHHHHHHHCSSCCC------CCCHHHHHHHTTS-BCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCcc------cCcHHHhhHHhcc-ccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHH
Confidence 445555655543 23322 2456679994322 12222212245789999999999999998653221 2378
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026041 83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (244)
Q Consensus 83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q 113 (244)
+|.+++.+|.--+.. ...+++++.||.+.-
T Consensus 107 ~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 107 ATLACIITLTLWRTG-ETQVQKGIEFFRTQA 136 (785)
T ss_dssp HHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccC-HHHHHHHHHHHHHHH
Confidence 999999998765422 224678888887653
No 45
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.02 E-value=0.0069 Score=57.79 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcccC--CCCccccccccchHHHHHHHHHHHHhh-CCCCCcCHHHHHHHHHhcccCCCCcCCCCCCC--Cc
Q 026041 6 ADKHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDIL-GKLDAVDEEDVISWILKCQDESGGFAGNIGHD--PH 80 (244)
Q Consensus 6 ~~~~~~yl~~~q~~--dg~~~~~~~~~~~~~~~y~al~~l~ll-g~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~ 80 (244)
++..++-|++..+. +|.. .+.++.|.|+..+=... +..........++||+..|.+||+||...... -.
T Consensus 10 ~~~~~~~i~~~~~~~~~g~~------S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 83 (764)
T 3p5p_A 10 ADELVVKIKDMFNALGDGDI------SPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDR 83 (764)
T ss_dssp HHHHHHHHHHHHHTCSSCCC------CCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcc------cCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 45556667665543 3322 24566799933321220 22111246789999999999999998643211 24
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Q 026041 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ 113 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q 113 (244)
+.+|.+++.+|.--+.. ...+++++.||.+.-
T Consensus 84 ll~TlAcvlAL~~w~~~-~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 84 LLNTTNSVIALSVWKTG-HSQVQQGAEFIAENL 115 (764)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence 78999999998765421 124688888887653
No 46
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.92 E-value=0.35 Score=45.79 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=37.2
Q ss_pred HHHHHHHHcccCCCCccccccc--cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026041 8 KHVKYIISVEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64 (244)
Q Consensus 8 ~~~~yl~~~q~~dg~~~~~~~~--~~~~~~~y~al~~l~llg~~~~~~~~~~i~~l~~~ 64 (244)
..++||..-|.+||+|+....- .-.+-.|.-++.+|.-=+..+ ...++++.||.+.
T Consensus 54 ~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fl~~n 111 (727)
T 3pya_A 54 SAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFP-HQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence 5789999999999999843210 124555666676666533322 3677888888753
No 47
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.33 E-value=0.019 Score=54.42 Aligned_cols=96 Identities=14% Similarity=0.191 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhcccCCCCcCCCCCCCC--c
Q 026041 6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDP--H 80 (244)
Q Consensus 6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~llg~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~--~ 80 (244)
++..++-++++.. .+|... +.++.|.|+ +++...+ .......++||+..|.+||+||...+... .
T Consensus 11 ~~~~~~~ir~~l~~~~~g~~S------~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~ 80 (727)
T 3pya_A 11 FKEAVKSVKTILRNLTDGEIT------ISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDR 80 (727)
T ss_dssp HHHHHHHHHHHHHTCCSCCCC------CCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhccCCccc------CcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhH
Confidence 3445555665544 244332 446679994 3332211 11367899999999999999996432221 4
Q ss_pred hhhHHHHHHHHHHhcCCCccCHHHHHHHHHhc
Q 026041 81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGL 112 (244)
Q Consensus 81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~ 112 (244)
+.+|.+++.+|.--+- ..-.+++++.||.+.
T Consensus 81 ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 81 LINTLACVVALRSWNL-FPHQCNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 6899999999876432 112467888888764
No 48
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=94.99 E-value=0.066 Score=51.49 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccc---CCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCCC-CCC-
Q 026041 54 EEDVISWILKCQD---ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWG-EVD- 128 (244)
Q Consensus 54 ~~~~i~~l~~~q~---~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~-~~d- 128 (244)
.++.++-|+.+.+ .||.++. ..+.+..|.++ +...-.+.........+++||...|.+||||+..... ..|
T Consensus 56 ~~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAWV-Amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ 131 (817)
T 3sdr_A 56 AEVLVSEIKAMLNPAITGDGESM---ITPSAYDTAWV-ARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDR 131 (817)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHHH-HTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCcc---cccCHHHhhHH-heeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHH
Confidence 4456777777654 5552332 24678888882 2211122222334578999999999999999853221 011
Q ss_pred hhhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026041 129 TRFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 129 ~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
+..|-+++.+|.--+ ..+..+++++.||.+
T Consensus 132 ll~TlAcvlAL~~w~-~~~~~i~~Gl~fl~~ 161 (817)
T 3sdr_A 132 LLATLSCVLVLLKWN-VGDLQVEQGIEFIKS 161 (817)
T ss_dssp HHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Confidence 334444444443323 234567889999976
No 49
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=94.69 E-value=0.046 Score=52.36 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHhcCCCccCHHHHHHHHHhccCCCCCccCCCC-CCCC-hhh
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-TRF 131 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~~~d-~~~ 131 (244)
.+..++.|+++.+.- |++. ..+.+..|.++.++ .-.+......-..+++||...|.+||||+.... ...| +..
T Consensus 33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVamv-p~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~ 107 (785)
T 3s9v_A 33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAWVARI-PAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILA 107 (785)
T ss_dssp HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHHHTTS-BCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhHHhcc-ccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHH
Confidence 445666666654321 2221 24678888883222 112222233457899999999999999986422 2224 445
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026041 132 SYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 132 ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
|-+++.+|.--+. .+..+++++.||.+
T Consensus 108 TlAcvlAL~~w~~-~~~~i~~Gl~fl~~ 134 (785)
T 3s9v_A 108 TLACIITLTLWRT-GETQVQKGIEFFRT 134 (785)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc-CHHHHHHHHHHHHH
Confidence 5555555543332 34567888888875
No 50
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=94.04 E-value=0.11 Score=49.57 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCCCchhhHHHHHHHHHHh--cCCCccCHHHHHHHHHhccCCCCCccCCCC-CCCC-h
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF--DKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-T 129 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l--~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~-~~~d-~ 129 (244)
.+..++.|+++.+.- |++. ..+.+..|.++.+ ..-. +......-..+++||...|.+||||+.... ...| +
T Consensus 10 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAWVam-vp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l 84 (764)
T 3p5p_A 10 ADELVVKIKDMFNAL-GDGD---ISPSAYDTAWVAR-LATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCDRL 84 (764)
T ss_dssp HHHHHHHHHHHHHTC-SSCC---CCCCHHHHHHHHH-CEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCc---ccCcHHHHHHHHh-CccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHHHH
Confidence 456677777665432 2222 2467888888322 2122 221222357799999999999999985321 1111 3
Q ss_pred hhHHHHHHHHHhhccCChhhHHHHHHHHHh
Q 026041 130 RFSYIAICCLSILQRLDKINVDKAVEYIVS 159 (244)
Q Consensus 130 ~~ty~al~~l~~l~~~~~~~~e~~~~~i~~ 159 (244)
..|-+++.+|.--+ ..+..+++++.||.+
T Consensus 85 l~TlAcvlAL~~w~-~~~~~i~~Gl~fl~~ 113 (764)
T 3p5p_A 85 LNTTNSVIALSVWK-TGHSQVQQGAEFIAE 113 (764)
T ss_dssp HHHHHHHHHHHHTT-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Confidence 34444444443322 234567889999975
No 51
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.84 E-value=11 Score=33.59 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcc--cCCCCcCCCCCCCCc--hhhHHHHHHHHHHhcCCC--cc--CHHHHH----HHHHhccCC-CCCcc
Q 026041 54 EEDVISWILKCQ--DESGGFAGNIGHDPH--VLYTLSAVQVLALFDKVD--IL--DADKVS----NYIVGLQNE-DGSFS 120 (244)
Q Consensus 54 ~~~~i~~l~~~q--~~dGgf~~~~~~~~~--~~~T~~al~~L~~l~~~~--~~--~~~~~~----~~l~~~q~~-dGgf~ 120 (244)
.+...+||...+ +++|||......... +...|+++-.|..+.... .. -.+.++ .....++.+ +|-|.
T Consensus 170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~ 249 (445)
T 3k11_A 170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR 249 (445)
T ss_dssp HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence 345667888877 678999765332222 234456666665543211 11 122222 222333433 35443
Q ss_pred CC----CCCCCC---hhhHHHHHHHH-HhhccCC---h------hhHHHHHHHHHhcCCCCCCCCCCCCC---CcchhHH
Q 026041 121 GD----IWGEVD---TRFSYIAICCL-SILQRLD---K------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQI 180 (244)
Q Consensus 121 ~~----~~~~~d---~~~ty~al~~l-~~l~~~~---~------~~~e~~~~~i~~~Q~~dGGf~~~p~~---~~~~~~T 180 (244)
.. ....+. .|..-|++.++ ..+..+. + ...++.++.++++|.+||.|...... ..+...|
T Consensus 250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT 329 (445)
T 3k11_A 250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT 329 (445)
T ss_dssp SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence 21 101111 23333333333 2333221 1 23567889999999999999765543 2333333
Q ss_pred HHHHHHHH---HhCCCCC----CCHHHHHHHHHcccccCccc
Q 026041 181 FCCVGALA---IAGALHH----VDKDLLGWWLCERQVKSGGL 215 (244)
Q Consensus 181 ~~al~aL~---~l~~~~~----~~~~~~~~wL~~~Q~~~GGf 215 (244)
...+.+|. .++.++. ...+++.+.|..+-+++|-.
T Consensus 330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l 371 (445)
T 3k11_A 330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQV 371 (445)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCB
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 33333332 2333322 12456788888776777744
No 52
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.26 E-value=18 Score=22.72 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=19.3
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHhcCCCC
Q 026041 134 IAICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (244)
Q Consensus 134 ~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~d 164 (244)
.|..+|..-+. ++|++++||-+...+.
T Consensus 35 qA~kALKat~~----NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE----NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS----CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC----CHHHHHHHHHhCCCCC
Confidence 35555555554 7999999999877654
No 53
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=50.85 E-value=27 Score=30.09 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCC---CcchhHHHHHHHHHHH---hCCCCCC---CHHHHHHHHHcccccCccccC
Q 026041 150 VDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQIFCCVGALAI---AGALHHV---DKDLLGWWLCERQVKSGGLNG 217 (244)
Q Consensus 150 ~e~~~~~i~~~Q~~dGGf~~~p~~---~~~~~~T~~al~aL~~---l~~~~~~---~~~~~~~wL~~~Q~~~GGf~~ 217 (244)
.++.+++++++|.+||-|...+.. ..+...|.....+|.- ++.++.. ..+++.+-|.++..++|-..+
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 567889999999999999865543 2344444443444322 2233321 246788888887777775533
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=41.83 E-value=1.4e+02 Score=25.59 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCC-CchhhHHHHHHHHHHhc-----CCCcc---CHHHHHHHHHhccCCCCCccC
Q 026041 54 EEDVISWILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFD-----KVDIL---DADKVSNYIVGLQNEDGSFSG 121 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~~-~~~~~T~~al~~L~~l~-----~~~~~---~~~~~~~~l~~~q~~dGgf~~ 121 (244)
.+++++.+.++|.+||-|-.....+ +-..++.+|+.+.+++. -++.. ..+++++-|.+..++||-..+
T Consensus 265 ~~~~a~~~~~~q~~~G~W~~~~d~~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l~~ 341 (382)
T 3pmm_A 265 LDAQIAALAECQDDSGLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGELLQ 341 (382)
T ss_dssp HHHHHHHHHHHCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCBCS
T ss_pred HHHHHHHHHHcCCCCCChhhccCCCCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCEeC
Confidence 4577888999999999876543322 22344455555444431 22211 247788889998888986644
No 55
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=40.79 E-value=27 Score=24.94 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhcCC-CCCCCCCC---------CCCCcchhHHHHHHHHHHHhCCC----------CCCCHHHHHHHHHcc
Q 026041 149 NVDKAVEYIVSCKN-LDGGFGCT---------PGGESHSGQIFCCVGALAIAGAL----------HHVDKDLLGWWLCER 208 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~-~dGGf~~~---------p~~~~~~~~T~~al~aL~~l~~~----------~~~~~~~~~~wL~~~ 208 (244)
+.+++++||..++. .|-|+... ...++-...-...+..|.-+|-. ..-|++++++||.+|
T Consensus 35 ~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 35 NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 68899999998762 22333210 01111111223456666666632 235799999999876
No 56
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.92 E-value=35 Score=21.34 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHcccc
Q 026041 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (244)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~wL~~~Q~ 210 (244)
-|..+|...+. .+++++++||.+++.
T Consensus 35 ~a~~AL~~t~~---~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 35 RAQKALASTGG---RSVQTACDWLFSHSG 60 (64)
T ss_dssp HHHHHHHHTTT---SCHHHHHHHHHSCCS
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHhCCC
Confidence 34555555432 379999999999874
No 57
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.85 E-value=83 Score=27.80 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCC-CCchhhHHHHHHHHHHh-----cCCCc----cCHHHHHHHHHhccCCCCCcc
Q 026041 54 EEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALF-----DKVDI----LDADKVSNYIVGLQNEDGSFS 120 (244)
Q Consensus 54 ~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l-----~~~~~----~~~~~~~~~l~~~q~~dGgf~ 120 (244)
.+++++.|.++|.++|-|-..... .+-..++..|+.+.+++ +.++. ...+++++-|.+..++||-..
T Consensus 296 ~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 296 FRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 456788889999999987654332 22234445555544443 22221 124678888888888888553
No 58
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.16 E-value=35 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhcCCCCC
Q 026041 149 NVDKAVEYIVSCKNLDG 165 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~dG 165 (244)
+++++++||.+.+...|
T Consensus 47 nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 47 DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp CHHHHHHHHHHCCSSSC
T ss_pred CHHHHHHHHHhCCCccC
Confidence 78999999999876554
No 59
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=35.23 E-value=50 Score=22.93 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=27.9
Q ss_pred ChhhHHHHHHHHHhhccCC-hhhHHHHHHHHHhcCCCCCCCCCC
Q 026041 128 DTRFSYIAICCLSILQRLD-KINVDKAVEYIVSCKNLDGGFGCT 170 (244)
Q Consensus 128 d~~~ty~al~~l~~l~~~~-~~~~e~~~~~i~~~Q~~dGGf~~~ 170 (244)
..|.+|--+.++.+...++ ..+-+++.+=|...-..+||||+.
T Consensus 57 EAR~vYqni~t~clveklhl~~eE~~~L~~I~~ia~S~~~WGgl 100 (112)
T 2ip6_A 57 QARVVYNKIASQALVDKLHFTAEENKVLAAINELAHSQKGWGEF 100 (112)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccccc
Confidence 4789999999999988765 234466778888888888999764
No 60
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=35.08 E-value=23 Score=18.26 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.0
Q ss_pred ccCccccCCCCCCCCccc
Q 026041 210 VKSGGLNGRPEKLPDVGI 227 (244)
Q Consensus 210 ~~~GGf~~~~~~~~d~~y 227 (244)
.++|||...|.|..|-|-
T Consensus 4 venggfcpdpekmgdwcc 21 (32)
T 4b2v_A 4 VENGGFCPDPEKMGDWCC 21 (32)
T ss_dssp CCTTCBCCCTTTTCCCCS
T ss_pred hhcCCcCCChHHhcchhh
Confidence 468999999999888764
No 61
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=31.68 E-value=49 Score=21.30 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHcccc
Q 026041 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (244)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~wL~~~Q~ 210 (244)
-|..||...+ -+++++++||.+.+.
T Consensus 45 ~a~~AL~~t~----~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 45 VARKALKASG----GDIEKATDWVFNNSG 69 (73)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHSCC
T ss_pred HHHHHHHHhC----CCHHHHHHHHHhCCC
Confidence 3455665544 379999999999873
No 62
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=31.52 E-value=58 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCCC
Q 026041 149 NVDKAVEYIVSCKNLD 164 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~~d 164 (244)
+++++++||.+.+.++
T Consensus 57 nve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 57 DIHAAIEMLLGASGPS 72 (74)
T ss_dssp CHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHhCCCCC
Confidence 7899999999877554
No 63
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.88 E-value=58 Score=21.03 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=17.8
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHhcCCCC
Q 026041 135 AICCLSILQRLDKINVDKAVEYIVSCKNLD 164 (244)
Q Consensus 135 al~~l~~l~~~~~~~~e~~~~~i~~~Q~~d 164 (244)
+..+|...+. +++++++||++.+.++
T Consensus 46 a~~AL~~~~~----nve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD----DLTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS----CHHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC----CHHHHHHHHHHCCCCC
Confidence 3444544442 7899999999877654
No 64
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=22.90 E-value=1.6e+02 Score=24.92 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCC-CCCCCCC---C---CCCcchhHHHHHHHHHHH---hCCCCCC---CHHHHHHHHHcc---cccCc
Q 026041 150 VDKAVEYIVSCKNL-DGGFGCT---P---GGESHSGQIFCCVGALAI---AGALHHV---DKDLLGWWLCER---QVKSG 213 (244)
Q Consensus 150 ~e~~~~~i~~~Q~~-dGGf~~~---p---~~~~~~~~T~~al~aL~~---l~~~~~~---~~~~~~~wL~~~---Q~~~G 213 (244)
.++.++++.++|.+ ||-|... | +...+...|.....+|.- .+.++.. ..+++.+.|.+. ..++|
T Consensus 243 ~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG 322 (373)
T 1nc5_A 243 LQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDG 322 (373)
T ss_dssp HHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTS
T ss_pred HHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCC
Confidence 46788999999997 9987632 2 222343334333333332 2433321 246677778663 35666
Q ss_pred c
Q 026041 214 G 214 (244)
Q Consensus 214 G 214 (244)
-
T Consensus 323 ~ 323 (373)
T 1nc5_A 323 A 323 (373)
T ss_dssp C
T ss_pred C
Confidence 3
No 65
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=22.86 E-value=82 Score=18.68 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=15.6
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHhcC
Q 026041 135 AICCLSILQRLDKINVDKAVEYIVSCK 161 (244)
Q Consensus 135 al~~l~~l~~~~~~~~e~~~~~i~~~Q 161 (244)
++.+|...+. ++++|++||.+.+
T Consensus 29 ~~~AL~~t~g----nve~Ave~L~~~~ 51 (53)
T 2knz_A 29 NLQALIATGG----DINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHTS----CHHHHHHHHHHCC
T ss_pred HHHHHHHhCC----CHHHHHHHHHHcC
Confidence 3444544443 7899999998754
No 66
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=22.46 E-value=98 Score=26.43 Aligned_cols=58 Identities=16% Similarity=0.044 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHHHhcccCC------CCcCCCCCCCCchhhHHHHHHHHH
Q 026041 35 GAYWGLTTLDILGKLDAVDEEDVISWILKCQDES------GGFAGNIGHDPHVLYTLSAVQVLA 92 (244)
Q Consensus 35 ~~y~al~~l~llg~~~~~~~~~~i~~l~~~q~~d------Ggf~~~~~~~~~~~~T~~al~~L~ 92 (244)
..++|+.++..+...+.+..+++++-+...|..| |||+......-|...-+.||.+..
T Consensus 283 ~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyGG~~~~~~~~~~sfdNL~~LlA~~ 346 (350)
T 3ren_A 283 PSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYGGFGDEKTNSVYSFDNLNALLAFQ 346 (350)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTTSCSBTTTTBCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCCcccccCCCceeeeccHHHHHHHH
Confidence 3677777666555334446778888888888777 788766555556666566665543
No 67
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.24 E-value=78 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHcccc
Q 026041 182 CCVGALAIAGALHHVDKDLLGWWLCERQV 210 (244)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~wL~~~Q~ 210 (244)
.|..||...+. .+++++++||.+.+.
T Consensus 25 ~a~~AL~~t~n---~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 25 TALKALAATGR---KTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHTS---CCHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCC---CCHHHHHHHHHhCCC
Confidence 45566666543 478999999999873
No 68
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.84 E-value=1e+02 Score=18.41 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=11.6
Q ss_pred hHHHHHHHHHhcCC
Q 026041 149 NVDKAVEYIVSCKN 162 (244)
Q Consensus 149 ~~e~~~~~i~~~Q~ 162 (244)
++++|++||.+...
T Consensus 37 dv~~Ave~L~~~~~ 50 (54)
T 2dah_A 37 DVDAAVEKLRQSSG 50 (54)
T ss_dssp CHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhCCC
Confidence 78999999997653
No 69
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.72 E-value=89 Score=19.37 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=16.7
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHhcCCC
Q 026041 135 AICCLSILQRLDKINVDKAVEYIVSCKNL 163 (244)
Q Consensus 135 al~~l~~l~~~~~~~~e~~~~~i~~~Q~~ 163 (244)
|..+|...+. +++++++||.+.+.+
T Consensus 26 a~~AL~~~~~----nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 26 SRQALMDNGN----NLEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHTTS----CHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCC----CHHHHHHHHHHCCCC
Confidence 3444444432 789999999987654
No 70
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=21.02 E-value=2.6e+02 Score=23.78 Aligned_cols=153 Identities=17% Similarity=0.083 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhcccCCC-CcCCCC-----C---CCCchhhHHHHHHHHHHhcCC
Q 026041 30 HLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESG-GFAGNI-----G---HDPHVLYTLSAVQVLALFDKV 97 (244)
Q Consensus 30 ~~~~~~~y~al~~l~llg~~~~---~~~~~~i~~l~~~q~~dG-gf~~~~-----~---~~~~~~~T~~al~~L~~l~~~ 97 (244)
...++..||...++..+..... ...++.++.|..-.-+|+ +|.+.. . .+..+ .|-=++.+.-.+...
T Consensus 166 ~~~ln~SY~~~~a~~~f~~~~~~W~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~v-n~iDalrv~L~La~~ 244 (350)
T 3ren_A 166 GNTTTLCYLDLPTMKLLSQVDKKWEGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENV-DFLLSTIVILNRIEA 244 (350)
T ss_dssp CSEEEGGGCCHHHHHHHHHHCTHHHHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEE-EHHHHHHHHHHHHHT
T ss_pred CCEeehHhcCHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCcccccCCcccccCCCCccccccc-chHHHHHHHHHHHhc
Confidence 3344557777777776653221 134456666766333442 332210 0 11111 221233322222111
Q ss_pred CccCHHHHHHHHHhccCCCCC----ccCCCCC--CCChhhHHHHHHHHHhhccCChhhHHHHHHHHHhcCCCC------C
Q 026041 98 DILDADKVSNYIVGLQNEDGS----FSGDIWG--EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD------G 165 (244)
Q Consensus 98 ~~~~~~~~~~~l~~~q~~dGg----f~~~~~~--~~d~~~ty~al~~l~~l~~~~~~~~e~~~~~i~~~Q~~d------G 165 (244)
.. +.....+|++.....+|. |....+. .......+.|++++..+..-+....+.+++-+...|..| |
T Consensus 245 g~-~~~~~~~fl~~~~~~~g~l~~~y~~~tg~~~~~~eS~g~yAiaal~~~~~~D~~la~~~~~rm~~fq~~d~~s~yyG 323 (350)
T 3ren_A 245 GE-NEESSIKWIKEKFKKDGFLVATYNGKNGDATSQIESPSIYSNVALIANYIGDKELFNKAIDKLKYYQIKNKDSVLYG 323 (350)
T ss_dssp TC-CCHHHHHHHHHHHHHHSSCCSEEETTTCCBCCCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCTTSTTTT
T ss_pred CC-CcHHHHHHHHHHHhhcCCcceEEECCCCCcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccCCCCcccCC
Confidence 11 224458888853222342 2211111 112233445666666554445566788888888877666 8
Q ss_pred CCCCCCCCCcchhHHHHHH
Q 026041 166 GFGCTPGGESHSGQIFCCV 184 (244)
Q Consensus 166 Gf~~~p~~~~~~~~T~~al 184 (244)
||+.......|..-=-.+|
T Consensus 324 G~~~~~~~~~~sfdNL~~L 342 (350)
T 3ren_A 324 GFGDEKTNSVYSFDNLNAL 342 (350)
T ss_dssp SCSBTTTTBCBHHHHHHHH
T ss_pred cccccCCCceeeeccHHHH
Confidence 8887666666644443343
No 71
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.93 E-value=91 Score=17.81 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHcc
Q 026041 182 CCVGALAIAGALHHVDKDLLGWWLCER 208 (244)
Q Consensus 182 ~al~aL~~l~~~~~~~~~~~~~wL~~~ 208 (244)
.|..+|...+ +++++++||.+.
T Consensus 25 ~a~~AL~~~~-----n~e~A~~~L~~h 46 (47)
T 2ekk_A 25 HAMEALLNTS-----TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHSC-----SHHHHHHHHHTC
T ss_pred HHHHHHHHcC-----CHHHHHHHHHcC
Confidence 3445555542 689999999864
Done!