Query 026043
Match_columns 244
No_of_seqs 268 out of 1614
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.3E-40 2.8E-45 280.4 5.3 164 1-165 1-191 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 5.1E-34 1.1E-38 206.5 3.1 75 2-77 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 4E-31 8.6E-36 194.1 3.1 77 2-78 1-77 (83)
4 smart00432 MADS MADS domain. 100.0 2.2E-30 4.7E-35 177.5 3.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.2E-29 2.5E-34 174.0 3.3 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 2E-28 4.3E-33 162.6 -1.2 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.9 5.2E-21 1.1E-25 145.3 10.3 90 85-174 11-100 (100)
8 KOG0015 Regulator of arginine 99.8 2.2E-20 4.7E-25 162.6 2.9 65 2-67 63-127 (338)
9 COG5068 ARG80 Regulator of arg 99.5 1.8E-14 3.8E-19 131.0 3.1 66 1-67 81-146 (412)
10 PF06005 DUF904: Protein of un 94.7 0.35 7.7E-06 34.4 8.2 50 120-174 1-50 (72)
11 PRK04098 sec-independent trans 89.9 0.2 4.3E-06 40.9 1.9 31 42-75 14-44 (158)
12 PF10584 Proteasome_A_N: Prote 88.9 0.11 2.3E-06 28.7 -0.2 14 43-56 3-16 (23)
13 cd07429 Cby_like Chibby, a nuc 87.6 0.98 2.1E-05 34.6 4.2 26 149-174 72-97 (108)
14 PF06698 DUF1192: Protein of u 87.0 0.89 1.9E-05 31.0 3.3 31 111-141 12-42 (59)
15 PF08317 Spc7: Spc7 kinetochor 85.5 19 0.00042 32.7 12.3 64 115-178 201-266 (325)
16 smart00787 Spc7 Spc7 kinetocho 85.1 8 0.00017 35.2 9.5 64 115-178 196-261 (312)
17 COG3074 Uncharacterized protei 83.8 11 0.00023 26.6 7.5 52 120-176 1-52 (79)
18 PRK13169 DNA replication intia 83.1 6.9 0.00015 30.1 7.0 49 122-175 7-55 (110)
19 PF06156 DUF972: Protein of un 82.9 7.6 0.00016 29.7 7.2 49 123-176 8-56 (107)
20 PRK15422 septal ring assembly 82.4 12 0.00025 27.0 7.4 45 120-169 1-45 (79)
21 PF01166 TSC22: TSC-22/dip/bun 82.0 2.6 5.5E-05 28.6 3.7 25 146-170 18-42 (59)
22 PF14662 CCDC155: Coiled-coil 79.9 36 0.00078 28.8 11.4 79 89-178 18-96 (193)
23 PRK10884 SH3 domain-containing 78.1 36 0.00078 29.0 10.5 23 90-112 90-112 (206)
24 PF07106 TBPIP: Tat binding pr 75.4 19 0.00042 29.3 7.9 44 90-137 83-126 (169)
25 PF04849 HAP1_N: HAP1 N-termin 73.0 27 0.00059 31.6 8.8 86 90-175 178-267 (306)
26 PRK11637 AmiB activator; Provi 70.9 82 0.0018 29.6 12.0 74 90-172 51-126 (428)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 70.7 49 0.0011 25.9 10.1 30 145-174 101-130 (132)
28 PRK10884 SH3 domain-containing 70.4 30 0.00064 29.6 8.1 20 89-108 96-115 (206)
29 PF07716 bZIP_2: Basic region 70.3 22 0.00048 23.3 5.9 38 135-176 15-52 (54)
30 TIGR02338 gimC_beta prefoldin, 68.5 49 0.0011 25.0 8.8 45 129-174 62-106 (110)
31 COG2433 Uncharacterized conser 68.0 56 0.0012 32.5 10.2 86 90-177 419-509 (652)
32 smart00338 BRLZ basic region l 67.4 25 0.00055 23.8 5.9 39 136-178 17-55 (65)
33 KOG4643 Uncharacterized coiled 67.0 36 0.00079 35.7 9.0 50 131-180 282-332 (1195)
34 PRK01919 tatB sec-independent 66.6 5.1 0.00011 33.1 2.5 28 43-73 15-42 (169)
35 COG4467 Regulator of replicati 65.5 24 0.00051 27.1 5.7 48 122-174 7-54 (114)
36 PF00170 bZIP_1: bZIP transcri 63.3 34 0.00074 23.1 5.9 37 136-176 17-53 (64)
37 TIGR02449 conserved hypothetic 62.7 49 0.0011 23.0 6.9 46 124-174 1-46 (65)
38 PF06005 DUF904: Protein of un 60.5 35 0.00077 24.1 5.6 37 142-178 11-47 (72)
39 PRK04654 sec-independent trans 59.9 2.5 5.4E-05 36.1 -0.4 28 43-73 15-42 (214)
40 PRK13824 replication initiatio 59.1 44 0.00095 31.6 7.6 98 34-142 103-212 (404)
41 KOG0804 Cytoplasmic Zn-finger 58.3 98 0.0021 29.6 9.6 36 136-171 376-411 (493)
42 smart00340 HALZ homeobox assoc 57.6 30 0.00065 21.9 4.2 27 151-177 7-33 (44)
43 PF06156 DUF972: Protein of un 56.7 24 0.00052 26.9 4.5 32 145-176 18-49 (107)
44 PF14645 Chibby: Chibby family 56.7 19 0.00041 27.9 4.0 26 148-173 70-95 (116)
45 KOG1962 B-cell receptor-associ 56.5 53 0.0012 28.3 7.1 53 122-174 157-211 (216)
46 COG0139 HisI Phosphoribosyl-AM 54.3 7.1 0.00015 30.0 1.3 39 15-53 48-95 (111)
47 PRK09343 prefoldin subunit bet 53.5 1E+02 0.0022 23.8 8.4 44 132-176 69-112 (121)
48 KOG4797 Transcriptional regula 53.2 20 0.00044 27.5 3.5 28 145-172 70-97 (123)
49 PF05529 Bap31: B-cell recepto 52.7 99 0.0021 25.6 8.1 54 123-176 125-188 (192)
50 KOG4797 Transcriptional regula 52.6 48 0.001 25.5 5.4 43 130-172 48-90 (123)
51 PF01166 TSC22: TSC-22/dip/bun 52.5 17 0.00037 24.7 2.7 32 143-174 5-39 (59)
52 PF10504 DUF2452: Protein of u 52.0 55 0.0012 26.8 6.1 41 121-161 28-71 (159)
53 PRK13729 conjugal transfer pil 51.4 2.1E+02 0.0045 27.7 10.7 30 145-174 93-122 (475)
54 KOG0971 Microtubule-associated 49.4 3.1E+02 0.0068 28.9 12.0 53 89-141 328-389 (1243)
55 PF07888 CALCOCO1: Calcium bin 48.1 2.8E+02 0.0062 27.3 13.3 29 146-174 210-238 (546)
56 TIGR02894 DNA_bind_RsfA transc 48.0 1.6E+02 0.0034 24.3 11.4 60 117-176 77-138 (161)
57 PF01502 PRA-CH: Phosphoribosy 47.9 6.4 0.00014 28.2 0.1 38 16-53 17-63 (75)
58 cd00187 TOP4c DNA Topoisomeras 47.2 1.7E+02 0.0036 28.1 9.5 62 4-73 253-327 (445)
59 PHA02592 52 DNA topisomerase I 46.2 2.7E+02 0.0059 26.6 11.6 29 42-73 298-326 (439)
60 PF15254 CCDC14: Coiled-coil d 45.6 2.7E+02 0.0059 28.7 10.9 84 89-174 390-480 (861)
61 PF04880 NUDE_C: NUDE protein, 45.6 30 0.00065 28.6 3.7 43 125-172 2-47 (166)
62 PRK13169 DNA replication intia 45.3 41 0.0009 25.8 4.2 31 145-175 18-48 (110)
63 COG5068 ARG80 Regulator of arg 44.8 15 0.00033 34.4 2.1 60 8-73 18-77 (412)
64 PF10211 Ax_dynein_light: Axon 44.0 1.9E+02 0.0041 24.2 10.1 24 50-74 81-104 (189)
65 PF10623 PilI: Plasmid conjuga 43.9 19 0.00041 26.0 2.0 32 42-73 8-41 (83)
66 TIGR01478 STEVOR variant surfa 43.5 26 0.00056 31.5 3.2 45 7-72 25-69 (295)
67 PF09278 MerR-DNA-bind: MerR, 42.9 91 0.002 20.6 5.4 49 119-168 14-62 (65)
68 PF09789 DUF2353: Uncharacteri 42.7 2.7E+02 0.0058 25.5 10.3 42 134-176 72-113 (319)
69 PF03980 Nnf1: Nnf1 ; InterPr 42.6 63 0.0014 24.2 4.9 47 117-176 61-107 (109)
70 PF04977 DivIC: Septum formati 42.2 59 0.0013 22.4 4.5 29 147-175 22-50 (80)
71 PRK00888 ftsB cell division pr 41.4 57 0.0012 24.7 4.5 28 147-174 32-59 (105)
72 PHA02109 hypothetical protein 41.1 37 0.00081 28.3 3.6 82 64-163 138-221 (233)
73 PF09158 MotCF: Bacteriophage 40.4 11 0.00025 28.5 0.5 54 5-74 19-73 (103)
74 cd01109 HTH_YyaN Helix-Turn-He 40.3 1.2E+02 0.0026 22.8 6.2 53 119-172 57-109 (113)
75 PF04111 APG6: Autophagy prote 40.2 2.8E+02 0.0062 25.1 11.6 43 123-170 64-106 (314)
76 PF10186 Atg14: UV radiation r 39.5 2.5E+02 0.0055 24.3 10.4 10 55-65 11-20 (302)
77 PF07888 CALCOCO1: Calcium bin 39.2 3.9E+02 0.0085 26.4 11.5 34 30-64 77-117 (546)
78 PF02416 MttA_Hcf106: mttA/Hcf 38.0 3 6.6E-05 27.7 -2.6 29 43-74 12-40 (53)
79 KOG0963 Transcription factor/C 37.8 2.7E+02 0.0058 27.9 9.3 83 94-176 122-209 (629)
80 COG1579 Zn-ribbon protein, pos 37.4 2.8E+02 0.0062 24.3 11.3 53 120-172 86-140 (239)
81 KOG0837 Transcriptional activa 36.5 1.4E+02 0.0031 26.5 6.7 60 116-177 193-255 (279)
82 PF04849 HAP1_N: HAP1 N-termin 36.4 63 0.0014 29.4 4.6 26 150-175 161-186 (306)
83 cd04769 HTH_MerR2 Helix-Turn-H 35.3 1.2E+02 0.0026 23.0 5.5 55 119-173 56-110 (116)
84 PF13758 Prefoldin_3: Prefoldi 35.2 2E+02 0.0043 21.7 6.7 79 89-176 8-95 (99)
85 PF00521 DNA_topoisoIV: DNA gy 34.9 1.3E+02 0.0028 28.4 6.8 62 3-73 243-315 (426)
86 PF15397 DUF4618: Domain of un 34.9 3.3E+02 0.0071 24.2 9.6 35 142-176 186-220 (258)
87 PF11802 CENP-K: Centromere-as 34.9 3E+02 0.0066 24.5 8.5 54 92-145 58-114 (268)
88 TIGR03752 conj_TIGR03752 integ 34.7 4.2E+02 0.0092 25.6 10.0 72 90-174 70-141 (472)
89 PF05812 Herpes_BLRF2: Herpesv 34.3 80 0.0017 24.6 4.3 25 150-174 4-28 (118)
90 KOG4643 Uncharacterized coiled 33.9 3.7E+02 0.008 28.7 9.9 18 90-107 478-495 (1195)
91 COG0216 PrfA Protein chain rel 33.8 2.7E+02 0.0058 25.8 8.2 91 62-168 8-102 (363)
92 PF14009 DUF4228: Domain of un 33.7 32 0.00069 27.5 2.2 33 40-73 14-46 (181)
93 KOG0183 20S proteasome, regula 33.5 22 0.00048 30.6 1.2 18 41-58 4-23 (249)
94 TIGR02449 conserved hypothetic 33.5 1.4E+02 0.0031 20.7 5.0 32 147-178 5-36 (65)
95 PF05325 DUF730: Protein of un 33.3 1.2E+02 0.0025 22.9 4.8 24 36-60 20-48 (122)
96 PF12018 DUF3508: Domain of un 33.1 19 0.00041 32.1 0.8 35 19-63 210-244 (281)
97 PF09744 Jnk-SapK_ap_N: JNK_SA 32.8 2.7E+02 0.0059 22.7 8.6 28 147-174 87-114 (158)
98 PRK15422 septal ring assembly 32.8 1.4E+02 0.0031 21.5 5.0 33 142-174 11-43 (79)
99 PF15619 Lebercilin: Ciliary p 31.9 3.1E+02 0.0068 23.1 10.7 53 124-177 140-192 (194)
100 cd04787 HTH_HMRTR_unk Helix-Tu 31.7 1.8E+02 0.0038 22.6 6.1 55 119-174 57-111 (133)
101 PHA03155 hypothetical protein; 31.7 72 0.0016 24.7 3.6 24 151-174 10-33 (115)
102 PRK14860 tatA twin arginine tr 31.6 6.4 0.00014 27.3 -1.9 39 34-77 8-46 (64)
103 PHA01750 hypothetical protein 31.6 1.8E+02 0.004 20.3 5.9 11 147-157 61-71 (75)
104 KOG4311 Histidinol dehydrogena 31.5 1.7E+02 0.0038 26.2 6.4 39 15-53 180-227 (359)
105 PF09798 LCD1: DNA damage chec 31.4 2.1E+02 0.0046 28.8 7.8 53 124-176 5-60 (654)
106 PHA03155 hypothetical protein; 31.3 2.5E+02 0.0054 21.7 7.3 58 87-144 9-66 (115)
107 PF09789 DUF2353: Uncharacteri 31.0 4.2E+02 0.0091 24.3 12.1 140 20-176 34-209 (319)
108 COG4831 Roadblock/LC7 domain [ 31.0 29 0.00063 26.1 1.3 29 31-60 4-32 (109)
109 PF08614 ATG16: Autophagy prot 30.8 3.1E+02 0.0068 22.7 10.7 49 125-173 132-182 (194)
110 PRK05561 DNA topoisomerase IV 30.5 5.8E+02 0.012 26.2 10.9 39 126-164 421-459 (742)
111 PHA03162 hypothetical protein; 30.4 75 0.0016 25.2 3.6 25 150-174 14-38 (135)
112 smart00030 CLb CLUSTERIN Beta 30.4 1.9E+02 0.0041 24.7 6.2 61 117-177 9-78 (206)
113 PF13870 DUF4201: Domain of un 30.2 3E+02 0.0065 22.4 12.9 85 89-176 9-104 (177)
114 PF09941 DUF2173: Uncharacteri 30.2 31 0.00067 26.5 1.4 26 33-59 4-29 (108)
115 cd01107 HTH_BmrR Helix-Turn-He 30.0 1.8E+02 0.0038 21.7 5.6 48 119-172 58-105 (108)
116 PF10473 CENP-F_leu_zip: Leuci 29.9 2.9E+02 0.0063 22.1 10.0 44 133-177 72-115 (140)
117 TIGR01950 SoxR redox-sensitive 29.8 1.3E+02 0.0028 23.9 5.1 54 119-172 57-110 (142)
118 COG4026 Uncharacterized protei 29.8 3.8E+02 0.0083 23.4 9.9 28 147-174 133-160 (290)
119 KOG0930 Guanine nucleotide exc 29.7 1.3E+02 0.0027 27.3 5.3 44 117-169 8-51 (395)
120 cd00632 Prefoldin_beta Prefold 29.6 2.4E+02 0.0051 20.9 7.3 29 147-175 75-103 (105)
121 cd02980 TRX_Fd_family Thioredo 29.6 28 0.0006 23.9 1.0 31 39-70 47-77 (77)
122 KOG0250 DNA repair protein RAD 29.3 5.9E+02 0.013 27.3 10.7 103 44-169 621-723 (1074)
123 TIGR02209 ftsL_broad cell divi 29.3 1.2E+02 0.0027 21.2 4.5 29 146-174 28-56 (85)
124 PF11629 Mst1_SARAH: C termina 28.2 77 0.0017 20.8 2.8 18 116-133 4-21 (49)
125 PRK10227 DNA-binding transcrip 28.0 2.2E+02 0.0047 22.4 6.0 54 119-173 57-110 (135)
126 PF12925 APP_E2: E2 domain of 27.8 3.8E+02 0.0082 22.7 9.5 54 122-176 47-101 (193)
127 KOG3119 Basic region leucine z 27.7 2.6E+02 0.0056 24.8 7.1 43 133-179 203-245 (269)
128 KOG1853 LIS1-interacting prote 27.5 3.2E+02 0.007 24.3 7.3 52 124-175 88-159 (333)
129 PF05812 Herpes_BLRF2: Herpesv 27.4 3E+02 0.0065 21.4 7.8 57 88-144 5-65 (118)
130 PF11365 DUF3166: Protein of u 27.3 1.5E+02 0.0032 22.3 4.5 33 145-177 11-43 (96)
131 KOG0933 Structural maintenance 27.2 7.9E+02 0.017 26.4 11.0 26 47-73 654-679 (1174)
132 cd04770 HTH_HMRTR Helix-Turn-H 27.1 2.3E+02 0.0049 21.4 5.9 53 119-172 57-109 (123)
133 PF10267 Tmemb_cc2: Predicted 27.1 2E+02 0.0043 27.2 6.4 62 89-159 7-72 (395)
134 KOG1853 LIS1-interacting prote 26.9 4.6E+02 0.0099 23.4 9.2 81 94-176 99-184 (333)
135 KOG4445 Uncharacterized conser 26.8 1.5E+02 0.0032 27.1 5.2 31 90-120 162-192 (368)
136 cd04776 HTH_GnyR Helix-Turn-He 26.8 2.9E+02 0.0062 21.0 7.0 56 119-174 55-112 (118)
137 COG4917 EutP Ethanolamine util 26.7 40 0.00086 27.0 1.5 24 35-58 59-82 (148)
138 PF03670 UPF0184: Uncharacteri 26.7 2.6E+02 0.0056 20.4 6.9 51 117-175 20-73 (83)
139 cd01108 HTH_CueR Helix-Turn-He 26.7 2.6E+02 0.0057 21.4 6.2 53 119-172 57-109 (127)
140 TIGR01069 mutS2 MutS2 family p 26.7 7.2E+02 0.016 25.6 11.2 35 123-157 539-573 (771)
141 PF14723 SSFA2_C: Sperm-specif 26.4 1.3E+02 0.0027 25.1 4.4 18 124-141 160-177 (179)
142 cd03064 TRX_Fd_NuoE TRX-like [ 26.1 29 0.00062 24.4 0.6 29 39-70 52-80 (80)
143 TIGR00606 rad50 rad50. This fa 25.9 7E+02 0.015 27.3 11.2 54 120-173 822-881 (1311)
144 smart00338 BRLZ basic region l 25.9 1.6E+02 0.0034 19.8 4.3 27 146-172 37-63 (65)
145 PF07558 Shugoshin_N: Shugoshi 25.6 95 0.0021 19.8 2.9 32 142-173 14-45 (46)
146 KOG2751 Beclin-like protein [S 25.6 3.1E+02 0.0068 26.2 7.3 89 63-173 155-243 (447)
147 PF07798 DUF1640: Protein of u 25.6 3.7E+02 0.0081 21.9 7.5 52 121-172 45-96 (177)
148 PF05130 FlgN: FlgN protein; 25.5 2.9E+02 0.0063 20.6 7.0 23 150-172 89-111 (143)
149 PF12718 Tropomyosin_1: Tropom 25.5 3.5E+02 0.0075 21.5 7.4 53 124-176 81-135 (143)
150 COG4467 Regulator of replicati 25.4 1.3E+02 0.0028 23.1 4.0 30 147-176 20-49 (114)
151 KOG4603 TBP-1 interacting prot 25.0 2.3E+02 0.0049 23.7 5.6 60 83-142 76-138 (201)
152 PF10481 CENP-F_N: Cenp-F N-te 24.9 5.1E+02 0.011 23.3 9.2 20 124-143 40-59 (307)
153 PF08946 Osmo_CC: Osmosensory 24.9 1.2E+02 0.0026 19.5 3.1 19 147-165 24-42 (46)
154 PF10018 Med4: Vitamin-D-recep 24.9 4E+02 0.0087 22.0 8.1 53 122-176 4-56 (188)
155 cd01282 HTH_MerR-like_sg3 Heli 24.8 2.4E+02 0.0051 21.2 5.5 51 119-170 56-109 (112)
156 TIGR02047 CadR-PbrR Cd(II)/Pb( 24.7 2.8E+02 0.0062 21.3 6.1 53 119-172 57-109 (127)
157 PF08781 DP: Transcription fac 24.6 3.7E+02 0.0081 21.6 6.9 45 124-170 2-46 (142)
158 KOG0977 Nuclear envelope prote 24.3 5.6E+02 0.012 25.3 9.1 19 90-108 110-128 (546)
159 TIGR02168 SMC_prok_B chromosom 24.3 8.3E+02 0.018 25.5 11.6 13 47-59 139-151 (1179)
160 PF01093 Clusterin: Clusterin; 24.2 2.2E+02 0.0048 27.2 6.2 60 117-176 3-71 (436)
161 PF04645 DUF603: Protein of un 24.1 4.3E+02 0.0092 22.1 7.5 49 123-171 112-160 (181)
162 PF10226 DUF2216: Uncharacteri 24.1 2.2E+02 0.0047 24.1 5.5 64 109-172 5-78 (195)
163 PF07851 TMPIT: TMPIT-like pro 23.7 5.8E+02 0.013 23.5 8.9 42 93-140 4-45 (330)
164 cd04785 HTH_CadR-PbrR-like Hel 23.6 2.9E+02 0.0064 21.1 6.0 54 119-173 57-110 (126)
165 KOG3612 PHD Zn-finger protein 23.3 4.4E+02 0.0095 26.0 8.0 72 35-111 404-478 (588)
166 TIGR02043 ZntR Zn(II)-responsi 23.3 2.4E+02 0.0052 21.9 5.4 53 119-172 58-111 (131)
167 PF04999 FtsL: Cell division p 23.3 1.8E+02 0.0039 21.1 4.5 30 146-175 39-68 (97)
168 PF11559 ADIP: Afadin- and alp 23.2 3.7E+02 0.0081 21.1 11.3 11 48-58 16-26 (151)
169 PRK09514 zntR zinc-responsive 23.2 2.3E+02 0.0051 22.3 5.4 54 119-172 58-111 (140)
170 smart00782 PhnA_Zn_Ribbon PhnA 23.2 42 0.00091 21.7 0.9 21 28-48 2-22 (47)
171 PRK01470 tatA twin arginine tr 23.2 11 0.00023 25.0 -2.0 30 43-75 14-43 (51)
172 TIGR02044 CueR Cu(I)-responsiv 23.2 3E+02 0.0066 21.0 6.0 54 119-173 57-110 (127)
173 PRK14127 cell division protein 23.1 2.4E+02 0.0051 21.6 5.1 47 116-177 19-65 (109)
174 PF04566 RNA_pol_Rpb2_4: RNA p 23.1 31 0.00067 23.7 0.3 31 22-54 23-54 (63)
175 KOG4673 Transcription factor T 23.1 7.1E+02 0.015 25.6 9.5 78 92-176 536-625 (961)
176 PF05700 BCAS2: Breast carcino 22.9 4.8E+02 0.01 22.2 9.1 73 85-164 142-218 (221)
177 PF06810 Phage_GP20: Phage min 22.9 4.1E+02 0.0089 21.4 7.0 41 124-166 28-68 (155)
178 KOG2264 Exostosin EXT1L [Signa 22.9 1.9E+02 0.0041 28.9 5.5 19 90-108 104-122 (907)
179 PF09388 SpoOE-like: Spo0E lik 22.9 2E+02 0.0044 17.9 4.5 39 98-138 2-40 (45)
180 PF02151 UVR: UvrB/uvrC motif; 22.9 1.5E+02 0.0033 17.6 3.3 33 124-156 3-35 (36)
181 PF12537 DUF3735: Protein of u 22.8 1.2E+02 0.0026 21.1 3.3 25 122-146 47-71 (72)
182 COG2433 Uncharacterized conser 22.8 2.9E+02 0.0063 27.6 6.8 46 5-55 222-267 (652)
183 PRK03918 chromosome segregatio 22.8 7.9E+02 0.017 25.1 10.5 12 122-133 658-669 (880)
184 KOG0184 20S proteasome, regula 22.7 45 0.00098 28.9 1.2 24 36-59 3-28 (254)
185 PRK09413 IS2 repressor TnpA; R 22.7 1.6E+02 0.0036 22.4 4.3 27 147-173 76-102 (121)
186 PHA03162 hypothetical protein; 22.7 4E+02 0.0086 21.2 7.7 58 88-145 15-76 (135)
187 PF03785 Peptidase_C25_C: Pept 22.6 30 0.00064 25.2 0.1 25 32-56 16-40 (81)
188 PTZ00108 DNA topoisomerase 2-l 22.5 1.1E+03 0.024 26.3 12.4 115 45-171 963-1154(1388)
189 KOG0182 20S proteasome, regula 22.4 50 0.0011 28.5 1.4 18 39-56 7-24 (246)
190 PHA02562 46 endonuclease subun 22.3 3.1E+02 0.0068 26.3 7.1 132 46-178 133-270 (562)
191 PF07544 Med9: RNA polymerase 22.2 3E+02 0.0065 19.7 7.2 44 89-135 24-71 (83)
192 KOG0243 Kinesin-like protein [ 22.2 5.1E+02 0.011 27.7 8.7 89 90-178 408-512 (1041)
193 PF14263 DUF4354: Domain of un 22.1 42 0.00091 26.4 0.9 43 11-58 41-83 (124)
194 TIGR02051 MerR Hg(II)-responsi 22.1 3.3E+02 0.0071 20.8 6.0 51 119-172 56-106 (124)
195 COG3853 TelA Uncharacterized p 22.1 3.1E+02 0.0067 25.8 6.6 43 132-174 221-265 (386)
196 cd01110 HTH_SoxR Helix-Turn-He 21.8 2.7E+02 0.0058 21.9 5.5 54 119-172 57-110 (139)
197 PRK15002 redox-sensitivie tran 21.8 2.4E+02 0.0052 22.8 5.3 53 119-171 67-119 (154)
198 cd04783 HTH_MerR1 Helix-Turn-H 21.8 2.9E+02 0.0063 21.1 5.6 51 119-172 57-107 (126)
199 cd01106 HTH_TipAL-Mta Helix-Tu 21.5 2.6E+02 0.0056 20.5 5.1 15 119-133 57-71 (103)
200 PF04859 DUF641: Plant protein 21.4 4.2E+02 0.009 21.0 8.6 51 121-172 81-131 (131)
201 PF03428 RP-C: Replication pro 21.1 1.4E+02 0.0031 24.8 3.9 64 41-112 96-170 (177)
202 PF10243 MIP-T3: Microtubule-b 21.1 32 0.00069 33.5 0.0 59 86-149 470-528 (539)
203 PF07676 PD40: WD40-like Beta 21.0 65 0.0014 18.9 1.4 20 41-60 9-28 (39)
204 PF02183 HALZ: Homeobox associ 20.9 2.4E+02 0.0051 17.9 4.7 32 145-176 8-39 (45)
205 PLN03128 DNA topoisomerase 2; 20.7 6.9E+02 0.015 27.1 9.6 27 44-73 961-987 (1135)
206 cd04786 HTH_MerR-like_sg7 Heli 20.6 3.4E+02 0.0073 21.1 5.8 54 119-174 57-110 (131)
207 PRK00409 recombination and DNA 20.3 9.6E+02 0.021 24.7 11.2 34 124-157 545-578 (782)
208 PRK00191 tatA twin arginine tr 20.2 11 0.00025 27.5 -2.5 37 34-75 7-43 (84)
209 PRK09039 hypothetical protein; 20.1 6.8E+02 0.015 22.9 8.5 58 92-170 136-194 (343)
210 KOG2940 Predicted methyltransf 20.0 56 0.0012 28.9 1.2 92 28-130 1-113 (325)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.3e-40 Score=280.41 Aligned_cols=164 Identities=48% Similarity=0.621 Sum_probs=133.5
Q ss_pred CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCC-ccchhhhhhhhccccccc
Q 026043 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSP-SMHKTLEKYERCSYGTLQ 79 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~-sm~~iLeRY~~~~~~~~~ 79 (244)
|||+||+|++|+|+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999753 399999999987665433
Q ss_pred ccccchhHh---------------------hhhHHHHHHHHHHHHHHHH---HHHHhhcCCCCCCCH-HHHHHHHHHHhh
Q 026043 80 ANHQSAKET---------------------QASYEEYIKLKEKHEALQH---LQRQFFGEDLGRLGL-EELEQLERQLGS 134 (244)
Q Consensus 80 ~~~~~~~~~---------------------q~~~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~qLe~ 134 (244)
.. ....+. +.+..+...++...+.++. .++++.|++|.+++. .+|..++.+|+.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~ 159 (195)
T KOG0014|consen 81 KK-RVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLES 159 (195)
T ss_pred cc-ccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHH
Confidence 22 111111 1133444556666666654 388999999999999 999999999999
Q ss_pred HHHHHHHhhhhchHHHHH-HHHHHHHHHHHHH
Q 026043 135 SLGRVRSLKTRNQLDKLS-ELQRKEEMLLEAN 165 (244)
Q Consensus 135 sL~~IR~rK~ql~~~~i~-~L~~ke~~L~eeN 165 (244)
++..+|..+...+.+++. .++.++..+.+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (195)
T KOG0014|consen 160 SLHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN 191 (195)
T ss_pred hhcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence 999999999999998887 5665555554433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=5.1e-34 Score=206.49 Aligned_cols=75 Identities=75% Similarity=1.092 Sum_probs=71.4
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccccc
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGT 77 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~ 77 (244)
||+||+|++|||+.+|++||+||++||||||+||||||||+||||||||+|++|+|+++ ++++||+||...+...
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~-s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP-SMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC-CHHHHHHHHHhccccc
Confidence 89999999999999999999999999999999999999999999999999999999976 7899999999886543
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=4e-31 Score=194.10 Aligned_cols=77 Identities=52% Similarity=0.782 Sum_probs=71.5
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcccccc
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL 78 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~ 78 (244)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++++++..+|+||...+....
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER 77 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence 89999999999999999999999999999999999999999999999999999999876459999999988765443
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=2.2e-30 Score=177.53 Aligned_cols=59 Identities=80% Similarity=1.166 Sum_probs=57.5
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCC
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~ 60 (244)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||||||||+|++|+|+++
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999863
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1.2e-29 Score=174.02 Aligned_cols=58 Identities=79% Similarity=1.192 Sum_probs=57.0
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccC
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (244)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++|+|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999985
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=2e-28 Score=162.64 Aligned_cols=51 Identities=67% Similarity=1.006 Sum_probs=47.1
Q ss_pred eeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccC
Q 026043 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 (244)
Q Consensus 9 k~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (244)
|+|+|+..|++||+|||.||||||+|||+|||||||||||||+|++|+|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.85 E-value=5.2e-21 Score=145.29 Aligned_cols=90 Identities=43% Similarity=0.595 Sum_probs=86.1
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 026043 85 AKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEA 164 (244)
Q Consensus 85 ~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~ee 164 (244)
+.+.+.|..++.+|+.+++.|+..+|+++|+||++||++||.+||++|+.||.+||+||+++|.++|+.|++|++.|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 026043 165 NNILSMKLEE 174 (244)
Q Consensus 165 N~~L~~kl~e 174 (244)
|..|+.+++|
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.79 E-value=2.2e-20 Score=162.58 Aligned_cols=65 Identities=43% Similarity=0.774 Sum_probs=61.2
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhh
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL 67 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iL 67 (244)
||.||+|++|||+..|.|||||||.|+||||+|||||.|.+|-|+|.|.+|-+|.|+++ .++-||
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp-KLep~i 127 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP-KLEPMI 127 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc-cccccc
Confidence 79999999999999999999999999999999999999999999999999999999975 665555
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.47 E-value=1.8e-14 Score=131.03 Aligned_cols=66 Identities=38% Similarity=0.615 Sum_probs=61.3
Q ss_pred CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhh
Q 026043 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTL 67 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iL 67 (244)
|||+|+.|..|+|+.+|.|||+||+.|++|||+||+||.|.+|.|+|.|.+|++|.|+++ ..+.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp-~~e~v~ 146 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP-KLESVV 146 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC-cccccc
Confidence 789999999999999999999999999999999999999999999999999999999975 444443
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.67 E-value=0.35 Score=34.36 Aligned_cols=50 Identities=30% Similarity=0.328 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+|++.|.+||..+..++..|. ++..++++|+.+-..|.++|..|+.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 578899999999999999987 45566678888766666666666665544
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=89.91 E-value=0.2 Score=40.95 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=23.4
Q ss_pred ceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 42 EVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
=||||||+|. ||++... .+-+.+..+++...
T Consensus 14 vVaLlvfGP~-KLP~~~r--~lGk~ir~~K~~~~ 44 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV--DIAKFFKAVKKTIN 44 (158)
T ss_pred HHHHhhcCch-HHHHHHH--HHHHHHHHHHHHHH
Confidence 3789999986 8888773 57788888877643
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=88.92 E-value=0.11 Score=28.70 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.4
Q ss_pred eeeeeecCCCCccc
Q 026043 43 VALIIFSSRGKLYE 56 (244)
Q Consensus 43 ValIvfS~~Gkl~e 56 (244)
-.+.+|||+|+||.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 45678999999975
No 13
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=87.55 E-value=0.98 Score=34.63 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 149 DKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 149 ~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..+..||+|.+.|+|||+.|+.|++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999999863
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.99 E-value=0.89 Score=31.04 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=25.2
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHhhHHHHHHH
Q 026043 111 QFFGEDLGRLGLEELEQLERQLGSSLGRVRS 141 (244)
Q Consensus 111 ~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~ 141 (244)
+.+|+||+.||++||..--..|+.=+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999877777766666654
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.50 E-value=19 Score=32.69 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=50.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 115 EDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 115 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
..++.++..+|..+-..|...-..|.++|..+ +..++..++.+...+.++-..+...|.+..+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999888776 55677777777777777777777777765543
No 16
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.10 E-value=8 Score=35.15 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 115 EDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 115 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
++++.++.++|..+-..|..-...|..++.++ +.+++..+..+.....+.-..+...|.+.++.
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999888888775 44566666666666666666666666665543
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.85 E-value=11 Score=26.63 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
||++=|.+||..+..++.-|- ++.-+|++|+.|-..|..+-..++...+...
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 577778889888888888774 6666777777777666666665555554443
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.10 E-value=6.9 Score=30.10 Aligned_cols=49 Identities=33% Similarity=0.483 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
++.|.+||+++...+..+..-|.++ .+|-..-..|+-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888998888888777666443 455555667777788888887764
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.87 E-value=7.6 Score=29.69 Aligned_cols=49 Identities=37% Similarity=0.496 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
+.|.+||++|..-+..|..-|.++ ..|-..-..|.-||..|+..|.+..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778888877777666555433 3444445556666666666666644
No 20
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.40 E-value=12 Score=27.04 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
||++=|.+||..+..++..|- ++.-+|++|+.|-..|.+++..++
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~~~ 45 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999888875 555666777777666666655533
No 21
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=82.05 E-value=2.6 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
.+.++|.+|..+...|+.||..|+.
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666665
No 22
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.94 E-value=36 Score=28.79 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
+.+..|+.+|+..++........| ++ |+..|..++...=.-+. +...+.+++++|+.--..|.++|+.|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L-~~--------e~~~L~~q~~s~Qqal~--~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQL-AE--------EITDLRKQLKSLQQALQ--KAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776665554 32 34444444433322222 33356667777777777777777776
Q ss_pred HHHHHHHHHH
Q 026043 169 SMKLEEINAA 178 (244)
Q Consensus 169 ~~kl~e~~~~ 178 (244)
..+....+++
T Consensus 87 ~aq~rqlEkE 96 (193)
T PF14662_consen 87 LAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHH
Confidence 6665544443
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.14 E-value=36 Score=29.05 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQF 112 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l 112 (244)
.....+.+++++++.++....++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666554443
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.44 E-value=19 Score=29.32 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLG 137 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~ 137 (244)
.+..++..|+..+..|+..+..+. ..++..||...-.+|+.-+.
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444332 34455555444444333333
No 25
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=72.96 E-value=27 Score=31.65 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLG--LEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEAN 165 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls--~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN 165 (244)
.++.|..+|+.+....+..-++|+-+++.-|+ -..+..|...|.......+....++ +..+|-+|++|.+.+.-+|
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 45555666665555555555566665544443 2456667777777776666666664 6789999999999999999
Q ss_pred HHHHHHHHHH
Q 026043 166 NILSMKLEEI 175 (244)
Q Consensus 166 ~~L~~kl~e~ 175 (244)
..|...+...
T Consensus 258 EeL~q~L~~s 267 (306)
T PF04849_consen 258 EELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHH
Confidence 9999888654
No 26
>PRK11637 AmiB activator; Provisional
Probab=70.88 E-value=82 Score=29.62 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNI 167 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~ 167 (244)
....++..+++++..++...+.+. .+|..|+.+|...-..|+....++ +..+|+.+++....++++-..
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~---------~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLL---------AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544432 356666666666666665554443 344444444444444444433
Q ss_pred HHHHH
Q 026043 168 LSMKL 172 (244)
Q Consensus 168 L~~kl 172 (244)
++..+
T Consensus 122 ~~~~l 126 (428)
T PRK11637 122 QERLL 126 (428)
T ss_pred HHHHH
Confidence 33333
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=70.72 E-value=49 Score=25.89 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=25.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..+..++..++++-..|.++|+.|..+|+.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356788899999999999999999988864
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.38 E-value=30 Score=29.57 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHL 108 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~ 108 (244)
..+..|+.++++++..++..
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 45666777777766666554
No 29
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.33 E-value=22 Score=23.30 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=27.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 135 SLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 135 sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
|-.+-|.||.+ .+.+|..+...|..+|..|..++....
T Consensus 15 AA~r~R~rkk~----~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 15 AARRSRQRKKQ----REEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666544 347788888899999999998887654
No 30
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.52 E-value=49 Score=25.01 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 129 ERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 129 E~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+...+.++..+..|+..+ ...|..|.++...|.+.-..++..+.+
T Consensus 62 ~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred eecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555333 566666777766666666666666554
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.04 E-value=56 Score=32.45 Aligned_cols=86 Identities=26% Similarity=0.275 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHH-----HhhhhchHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVR-----SLKTRNQLDKLSELQRKEEMLLEA 164 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR-----~rK~ql~~~~i~~L~~ke~~L~ee 164 (244)
....++.++..+++.|+.++++|-.+ +..|- +++..|+.+|+..-..++ .|+.+.+...|..|.++-..-...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777765432 00010 577777877777766665 344555667777777776555555
Q ss_pred HHHHHHHHHHHHH
Q 026043 165 NNILSMKLEEINA 177 (244)
Q Consensus 165 N~~L~~kl~e~~~ 177 (244)
-..|..++.+..+
T Consensus 497 ve~L~~~l~~l~k 509 (652)
T COG2433 497 VEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHH
Confidence 6667777666553
No 32
>smart00338 BRLZ basic region leucin zipper.
Probab=67.36 E-value=25 Score=23.82 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=29.0
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 136 LGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 136 L~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
-..-|.||.+ .+..|..+...|..+|..|..++.....+
T Consensus 17 A~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~~e 55 (65)
T smart00338 17 ARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLRRE 55 (65)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666654 45788888999999999999988776544
No 33
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=66.96 E-value=36 Score=35.67 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=38.3
Q ss_pred HHhhHHHHHHHhhhh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026043 131 QLGSSLGRVRSLKTR-NQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180 (244)
Q Consensus 131 qLe~sL~~IR~rK~q-l~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~~~ 180 (244)
.|+.-|.+.|+|=.. -+..+|-.+++|-..++.++...+.++++..-++.
T Consensus 282 MLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEns 332 (1195)
T KOG4643|consen 282 MLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENS 332 (1195)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 467777778877655 36678888888888889999888888888766543
No 34
>PRK01919 tatB sec-independent translocase; Provisional
Probab=66.62 E-value=5.1 Score=33.11 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=18.6
Q ss_pred eeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 43 VALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
||||||+|. ||.+.. ..+-+.+-+++++
T Consensus 15 VALiV~GPe-kLP~~a--RtlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGPE-RLPRVA--RTAGALFGRAQRY 42 (169)
T ss_pred HHHheeCch-HhHHHH--HHHHHHHHHHHHH
Confidence 789999986 566665 2466666666554
No 35
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=65.51 E-value=24 Score=27.07 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++.+.+||.+|-.-+..|-.-|.++ .+|-..-..|+=||..||+.+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 3567888888887777766655443 33333344555566666666655
No 36
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.26 E-value=34 Score=23.11 Aligned_cols=37 Identities=32% Similarity=0.392 Sum_probs=25.5
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 136 LGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 136 L~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
-...|.||.+. +..|..+...|..+|..|...+....
T Consensus 17 Ar~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 17 ARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666554 47788888888888888887776544
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=62.69 E-value=49 Score=22.98 Aligned_cols=46 Identities=28% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
||+.||..++.-+.....=+ .+-..|+..+..+..++..|..|++.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~-----~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLK-----SENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888887776655433 33344555555555555555555543
No 38
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=60.54 E-value=35 Score=24.10 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=28.7
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
.|.+-..+.|..|+.+...|.++|..|.....+...+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4666778889999999999999999888776655444
No 39
>PRK04654 sec-independent translocase; Provisional
Probab=59.92 E-value=2.5 Score=36.15 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.1
Q ss_pred eeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 43 VALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
||||||+|. ||.+.. ..+-+.+.++++.
T Consensus 15 VALlV~GPe-rLPe~a--RtlGk~irk~R~~ 42 (214)
T PRK04654 15 VALVVLGPE-RLPKAA--RFAGLWVRRARMQ 42 (214)
T ss_pred HHHHhcCch-HHHHHH--HHHHHHHHHHHHH
Confidence 788999875 666665 2566666666643
No 40
>PRK13824 replication initiation protein RepC; Provisional
Probab=59.13 E-value=44 Score=31.55 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=59.6
Q ss_pred hhhcccCcceeeeee--cCCCCcccccCCC---------ccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHH
Q 026043 34 ELSVLCDAEVALIIF--SSRGKLYEFCSSP---------SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKH 102 (244)
Q Consensus 34 ELSvLCdaeValIvf--S~~Gkl~ef~s~~---------sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~ki 102 (244)
-|+.|. |.+||++ ||+||=|-+-... ++.-++.||...... ....+.-..++..|+.++
T Consensus 103 hla~Lv--eaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~--------A~~~~ae~~~~r~lr~~i 172 (404)
T PRK13824 103 HLAALV--EAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEAL--------AEQVAAERKALRRLRERL 172 (404)
T ss_pred HHHHHH--HCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 345554 5568888 9999987653211 245566777544221 111223356677788888
Q ss_pred HHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHhhHHHHHHHh
Q 026043 103 EALQHLQRQFFGEDLG-RLGLEELEQLERQLGSSLGRVRSL 142 (244)
Q Consensus 103 e~Lq~~~r~l~GedL~-~Ls~~EL~~LE~qLe~sL~~IR~r 142 (244)
..+.+..+.++-...+ +++ -+...++..++..+..++.+
T Consensus 173 t~~rRdi~~li~~a~~~~~~-~~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 173 TLCRRDIAKLIEAAIEEGVP-GDWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHHHcCCC
Confidence 8888888876632111 111 14888888888888888844
No 41
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.32 E-value=98 Score=29.65 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=24.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 136 LGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMK 171 (244)
Q Consensus 136 L~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~k 171 (244)
.++|=++|.+-+...++.+++....+.|+|+.|.+-
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666677777777777777888777663
No 42
>smart00340 HALZ homeobox associated leucin zipper.
Probab=57.60 E-value=30 Score=21.93 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
-+.|++-=..|.++|+.|++.+++..+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888999999999999998653
No 43
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.75 E-value=24 Score=26.94 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=27.5
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
..|.++|..||.....|.|||..|+.......
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999876544
No 44
>PF14645 Chibby: Chibby family
Probab=56.69 E-value=19 Score=27.91 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 148 LDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 148 ~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
......++++.+.|+|||+.|+-|++
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888899988888864
No 45
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.54 E-value=53 Score=28.30 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTR--NQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~q--l~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..|+..|+..++..-+.......+ .|..|.+.+++.-..|.|+|..|+.+++-
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 456667777766665555544444 45566677777667788888888777643
No 46
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=54.35 E-value=7.1 Score=30.00 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=29.2
Q ss_pred CCcceeccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 026043 15 INRQVTFAKRRNGL---------LKKAYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 15 ~~RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIvfS~~Gk 53 (244)
+.+..-||+=|+-| +-|..|+.+-||.|.-||+..+.|.
T Consensus 48 Tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 48 TGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred cCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 34445567767644 5557899999999999999988664
No 47
>PRK09343 prefoldin subunit beta; Provisional
Probab=53.51 E-value=1e+02 Score=23.80 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=27.6
Q ss_pred HhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 132 LGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 132 Le~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.+.+...+..|+ +.+...|..|.+++..|++.-..++.+|.+.-
T Consensus 69 ~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 69 KTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 23347778888888888777777777776643
No 48
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=53.16 E-value=20 Score=27.45 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=20.7
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
+.+.++|.+|-.+...|.+||..|+.-.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566777788888888888888777654
No 49
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=52.73 E-value=99 Score=25.59 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhHHHHHHHh----------hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSL----------KTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~r----------K~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.+|..++..++..-+...+. +..-..++++.|+++-.....+...|+++.+...
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666554322 3345567777777777666777777777665543
No 50
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=52.63 E-value=48 Score=25.46 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 130 RQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 130 ~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
..++.++.-|...-+-...++++-|+.+.+.|.+.|..|+.+-
T Consensus 48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555433333345899999999999999999998863
No 51
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=52.48 E-value=17 Score=24.70 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=25.6
Q ss_pred hhhchH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 143 KTRNQL---DKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 143 K~ql~~---~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
|++||. ++++.||.+...|.+.|..|...-.-
T Consensus 5 KtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN~~ 39 (59)
T PF01166_consen 5 KTHLMYAVREEVEVLKEQIAELEERNSQLEEENNL 39 (59)
T ss_dssp CCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 78999999999999999999886443
No 52
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=52.00 E-value=55 Score=26.83 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhhHHHHHHHh---hhhchHHHHHHHHHHHHHH
Q 026043 121 GLEELEQLERQLGSSLGRVRSL---KTRNQLDKLSELQRKEEML 161 (244)
Q Consensus 121 s~~EL~~LE~qLe~sL~~IR~r---K~ql~~~~i~~L~~ke~~L 161 (244)
+..||..|-++++.+..-+|++ |-.++.+||..||..-+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~i 71 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKI 71 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999888876 4445666766666554433
No 53
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.36 E-value=2.1e+02 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=24.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++|..+..+++.|.+.|.++|..|+.+++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677888888999999999999843
No 54
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.40 E-value=3.1e+02 Score=28.93 Aligned_cols=53 Identities=28% Similarity=0.300 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh------hcCCCCCCCHHHHHHHHHH---HhhHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQF------FGEDLGRLGLEELEQLERQ---LGSSLGRVRS 141 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l------~GedL~~Ls~~EL~~LE~q---Le~sL~~IR~ 141 (244)
+.+++|+.-++++++.|....--| -|.|-...|.=++.+||+| |-.+|-+.|.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777665543221 2666667777777777776 6677777764
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.07 E-value=2.8e+02 Score=27.31 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.+..+..++..+...|.++...|..+..+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666777777777666543
No 56
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=48.01 E-value=1.6e+02 Score=24.28 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhh--hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLK--TRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK--~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.+.+++++....-++|.........-+ ++-+.+++..|+.+...|..+|..|.+++....
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999998888888876533333222 234667778888888888888888888765443
No 57
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=47.95 E-value=6.4 Score=28.18 Aligned_cols=38 Identities=26% Similarity=0.502 Sum_probs=28.5
Q ss_pred Ccceeccccccchhhh---------hhhhhcccCcceeeeeecCCCC
Q 026043 16 NRQVTFAKRRNGLLKK---------AYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 16 ~RqvTFsKRr~GL~KK---------A~ELSvLCdaeValIvfS~~Gk 53 (244)
.+-+-||+-|++|-.| +.|+.+-||.|.-|+..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3445568888877555 5799999999999999988887
No 58
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=47.21 E-value=1.7e+02 Score=28.07 Aligned_cols=62 Identities=19% Similarity=0.428 Sum_probs=38.2
Q ss_pred ccc-ceeeecCCCCc-ceecc---ccc-------cchhhhhh-hhhcccCcceeeeeecCCCCcccccCCCccchhhhhh
Q 026043 4 GKV-ELKRIENKINR-QVTFA---KRR-------NGLLKKAY-ELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 70 (244)
Q Consensus 4 ~Ki-~ik~Ien~~~R-qvTFs---KRr-------~GL~KKA~-ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY 70 (244)
+|+ .|+-|.|.+.| .|.|- ||. ++|+|+-. +-++-| -+++|.++|++..| ++.+||+.|
T Consensus 253 ~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~----~l~~iL~~f 324 (445)
T cd00187 253 KKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL----NLKEILQEF 324 (445)
T ss_pred CCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe----CHHHHHHHH
Confidence 344 46667777766 34442 332 25554432 223333 67788889999988 378999988
Q ss_pred hhc
Q 026043 71 ERC 73 (244)
Q Consensus 71 ~~~ 73 (244)
-.+
T Consensus 325 ~~~ 327 (445)
T cd00187 325 LDH 327 (445)
T ss_pred HHH
Confidence 655
No 59
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=46.24 E-value=2.7e+02 Score=26.60 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=24.0
Q ss_pred ceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 42 EVALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 42 eValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
-+-+++|.++|++..|. ++.+||+.|-.+
T Consensus 298 ~~Nm~~~d~~g~~~~~~---~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE---NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC---CHHHHHHHHHHH
Confidence 37788999999999985 589999998654
No 60
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=45.61 E-value=2.7e+02 Score=28.68 Aligned_cols=84 Identities=25% Similarity=0.187 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh-cC---CCC--CCCHHHHHHHHHHHhhHHHHHHHhhh-hchHHHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQFF-GE---DLG--RLGLEELEQLERQLGSSLGRVRSLKT-RNQLDKLSELQRKEEML 161 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l~-Ge---dL~--~Ls~~EL~~LE~qLe~sL~~IR~rK~-ql~~~~i~~L~~ke~~L 161 (244)
|-++.|..-|+.++..|...+|.-- .+ +-. +|-+--|+.|--.|++-|..-. |. +++...-++|-+-...+
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~--k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESL--KSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHH--HhHHHHHHhHHHHHHHHHHH
Confidence 4566666666666666655544311 11 111 3334455554444444443322 21 23444445555555666
Q ss_pred HHHHHHHHHHHHH
Q 026043 162 LEANNILSMKLEE 174 (244)
Q Consensus 162 ~eeN~~L~~kl~e 174 (244)
.+||+.|.+.+.+
T Consensus 468 ~~Enk~~~~~~~e 480 (861)
T PF15254_consen 468 KEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666544
No 61
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.60 E-value=30 Score=28.60 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhchHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 026043 125 LEQLERQLGSSLGRVRSLKTRNQLDKL---SELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~ql~~~~i---~~L~~ke~~L~eeN~~L~~kl 172 (244)
|.++|..|..++.+-= +|..+| +.|+-..+.|.+|-..|+..+
T Consensus 2 LeD~EsklN~AIERna-----lLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNA-----LLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888876433 444444 334444445555555555554
No 62
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.30 E-value=41 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
..+.+++..||.....|.|||..|+..-.-.
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999875443
No 63
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=44.81 E-value=15 Score=34.45 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=49.8
Q ss_pred eeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 8 ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
|+++-++..-..||..|+.| ||+++||+.+-+.||-..--...|+.+.-+.+.-.-|+..
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 78888888899999999999 9999999999999997776677787766666666666655
No 64
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=44.03 E-value=1.9e+02 Score=24.15 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=13.2
Q ss_pred CCCCcccccCCCccchhhhhhhhcc
Q 026043 50 SRGKLYEFCSSPSMHKTLEKYERCS 74 (244)
Q Consensus 50 ~~Gkl~ef~s~~sm~~iLeRY~~~~ 74 (244)
.+|-|..--- ..+..+|++|....
T Consensus 81 ERGlLL~rvr-de~~~~l~~y~~l~ 104 (189)
T PF10211_consen 81 ERGLLLLRVR-DEYRMTLDAYQTLY 104 (189)
T ss_pred HHhHHHHHHH-HHHHHHHHHHHHHH
Confidence 4665544221 24667777776653
No 65
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=43.93 E-value=19 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=25.6
Q ss_pred ceeeeeecCCC--CcccccCCCccchhhhhhhhc
Q 026043 42 EVALIIFSSRG--KLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 42 eValIvfS~~G--kl~ef~s~~sm~~iLeRY~~~ 73 (244)
.+-|+|++++| ||+.++.+.+...++.+|..-
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46789999988 588777666899999999753
No 66
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=43.48 E-value=26 Score=31.47 Aligned_cols=45 Identities=13% Similarity=0.337 Sum_probs=33.0
Q ss_pred ceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhh
Q 026043 7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYER 72 (244)
Q Consensus 7 ~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~ 72 (244)
.+..|.|.+.|..+=|+ .||..|.+ +.| .|-++|.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678898888777332 47888775 333 47778899999999975
No 67
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.94 E-value=91 Score=20.64 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
++|++|+.++-.--+..-....... +++.++++++.++...|+.--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888733222222222222 556666666666655555444333
No 68
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.72 E-value=2.7e+02 Score=25.51 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=31.7
Q ss_pred hHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 134 SSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 134 ~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.-|...|.+ +.-+..+++.|+.+-..++..++.||.++....
T Consensus 72 ~lL~~sre~-Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 72 QLLSESREQ-NKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 334455554 335678889999999999999999999987743
No 69
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=42.62 E-value=63 Score=24.23 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
..+++++++ |++.-......+++.|..+-..+..+|..|...|.+..
T Consensus 61 ~~~l~P~~~-------------i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 61 RHSLTPEED-------------IRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCCCChHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777754 34444445567789999999999999999999988743
No 70
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.21 E-value=59 Score=22.39 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+..++..|+++...+..+|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888888887764
No 71
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.44 E-value=57 Score=24.67 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+..++.+++++...|+.+|..|+.++..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666654
No 72
>PHA02109 hypothetical protein
Probab=41.08 E-value=37 Score=28.35 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=43.0
Q ss_pred chhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHhhHHHHHHH
Q 026043 64 HKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLG--LEELEQLERQLGSSLGRVRS 141 (244)
Q Consensus 64 ~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls--~~EL~~LE~qLe~sL~~IR~ 141 (244)
-.||.||++....+......+.. .+ .-++----++|+.++ ++..|+.|++|+ ++++-.|+..||
T Consensus 138 L~VL~R~R~~~~~E~k~r~~~~K-P~--~v~~~AsTE~ID~~~---~~~t~~~L~~~~~~L~~I~~L~~ki~-------- 203 (233)
T PHA02109 138 LAVLTRTRRIETIEKKTRVRPAK-PK--AVEIHASTERIDQVE---RSHTGENLEGLTDKLKQISELTIKLE-------- 203 (233)
T ss_pred chhhhhhhhhhhhhhhcCCCCCC-cc--ceeccccHHHHHHHH---hccchhhhhhhhHHHHhhHHHHHHHH--------
Confidence 46889998765544333211100 00 001111123344443 456688888886 556666655443
Q ss_pred hhhhchHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLE 163 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~e 163 (244)
.+.++..++|.|...+..
T Consensus 204 ----~LS~E~~Q~~~Ki~N~R~ 221 (233)
T PHA02109 204 ----ALSDEACQVKHKILNLRA 221 (233)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 566777777777655443
No 73
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=40.39 E-value=11 Score=28.50 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=35.1
Q ss_pred ccceeee-cCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcc
Q 026043 5 KVELKRI-ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCS 74 (244)
Q Consensus 5 Ki~ik~I-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~ 74 (244)
+|++|-+ +|.+|=.|+|.||-.|+-+ +=...+|..--|+-. -.+++++.|....
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk-~se~~~~~f~slG 73 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYK-MSEEIIKKFTSLG 73 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES---HHHHHHHHHTT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEc-CCHHHHHHHHhcC
Confidence 5778776 7889999999999999621 112477866555532 4577788886553
No 74
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=40.28 E-value=1.2e+02 Score=22.76 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+.++-......-..+.. -..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999988875543322111111 234555666666666665555555555544
No 75
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.25 E-value=2.8e+02 Score=25.08 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
+||..||+.-+.....++.-+ .+...+++.|...-.+.+.+..
T Consensus 64 ~eL~~LE~e~~~l~~el~~le-----~e~~~l~~eE~~~~~~~n~~~~ 106 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELE-----EELEELDEEEEEYWREYNELQL 106 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 356666665555555544422 2334444444444444433333
No 76
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.47 E-value=2.5e+02 Score=24.28 Aligned_cols=10 Identities=10% Similarity=0.554 Sum_probs=4.7
Q ss_pred ccccCCCccch
Q 026043 55 YEFCSSPSMHK 65 (244)
Q Consensus 55 ~ef~s~~sm~~ 65 (244)
.-||.+ ++..
T Consensus 11 ~~~C~~-C~~~ 20 (302)
T PF10186_consen 11 RFYCAN-CVNN 20 (302)
T ss_pred CeECHH-HHHH
Confidence 335643 5544
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=39.18 E-value=3.9e+02 Score=26.37 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=18.3
Q ss_pred hhhhhhhcccCcceeeeeecC-CC------CcccccCCCccc
Q 026043 30 KKAYELSVLCDAEVALIIFSS-RG------KLYEFCSSPSMH 64 (244)
Q Consensus 30 KKA~ELSvLCdaeValIvfS~-~G------kl~ef~s~~sm~ 64 (244)
-+||.|--- |.+-=..||.. .| .+|.|..+..++
T Consensus 77 F~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~~p~e 117 (546)
T PF07888_consen 77 FQAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAPKPLE 117 (546)
T ss_pred ECcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCCCccc
Confidence 357777754 33444455533 44 367787543343
No 78
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=38.04 E-value=3 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.586 Sum_probs=21.7
Q ss_pred eeeeeecCCCCcccccCCCccchhhhhhhhcc
Q 026043 43 VALIIFSSRGKLYEFCSSPSMHKTLEKYERCS 74 (244)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~ 74 (244)
|+||||+| +||.+++ .++-+.+..|++..
T Consensus 12 valllfGp-~kLP~~~--r~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELA--RSLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHH--HHHHHHHHHHHHHH
Confidence 68889998 6798887 36888888887653
No 79
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.76 E-value=2.7e+02 Score=27.87 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHhhHHH----HHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026043 94 EYIKLKEKHEALQHLQRQFFGEDLGRLGL-EELEQLERQLGSSLG----RVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 94 E~~kLk~kie~Lq~~~r~l~GedL~~Ls~-~EL~~LE~qLe~sL~----~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
|..+|+..++.+....-.+-+-++.-.++ +.|..++..++...+ -+-....+-..+....|+..+..+++.|..+
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556665555555444433333322222 345556666665555 4455555556666677777777777777777
Q ss_pred HHHHHHHH
Q 026043 169 SMKLEEIN 176 (244)
Q Consensus 169 ~~kl~e~~ 176 (244)
.+++...+
T Consensus 202 e~ki~~lq 209 (629)
T KOG0963|consen 202 EKKISSLQ 209 (629)
T ss_pred HHHHHHHH
Confidence 77776554
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.43 E-value=2.8e+02 Score=24.25 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
-+.+++..|...++.+-.++++--.++ +.+.+..|+++...|.+....+...+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888877777776655443 33444444444444444444444433
No 81
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=36.47 E-value=1.4e+02 Score=26.49 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCCCCC--HHHHHHHHH-HHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 116 DLGRLG--LEELEQLER-QLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 116 dL~~Ls--~~EL~~LE~-qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
.|.++. ..|+..||+ .+.+....-++|| ..++.|..|++|+..|.-.|..|...+.....
T Consensus 193 pispid~e~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 193 PISPIDMEDQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred CCCcccchhHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 344443 356666665 3444444444444 45789999999999999999888877765443
No 82
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.36 E-value=63 Score=29.36 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+++.|++|.+.|.++|..|+......
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999986543
No 83
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=35.29 E-value=1.2e+02 Score=22.96 Aligned_cols=55 Identities=15% Similarity=-0.026 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+++++|+.++-...+..-...-..-..++.+++..+.++.+.|+..-+.|...+.
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEA 110 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887665543211111111245555556666666555555555555443
No 84
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=35.20 E-value=2e+02 Score=21.74 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHhhcCCCCC--CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQH-------LQRQFFGEDLGR--LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEE 159 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~-------~~r~l~GedL~~--Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~ 159 (244)
+.|..||.-||++++.|-. ..+. .|.++++ ++-+|+..|-.. .- .|...+.|++ +-|-++..
T Consensus 8 q~w~aEYe~LKEEi~~l~~~~~~~~e~l~~-i~r~f~g~lv~~kEi~~ilG~---~~-~i~Rt~~Qvv----~~l~RRiD 78 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEALPEDDDATREDLLR-IRRDFGGSLVTEKEIKEILGE---GQ-GITRTREQVV----DVLSRRID 78 (99)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCHHHHHH-HHHhcCcccccHHHHHHHhCC---CC-CCCcCHHHHH----HHHHHHHH
Confidence 5788999999999999832 2222 2444432 455555554222 11 1112223332 44455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026043 160 MLLEANNILSMKLEEIN 176 (244)
Q Consensus 160 ~L~eeN~~L~~kl~e~~ 176 (244)
-.++.-..|.++|...+
T Consensus 79 YV~~Ni~tleKql~~aE 95 (99)
T PF13758_consen 79 YVQQNIETLEKQLEAAE 95 (99)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555566677665543
No 85
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=34.90 E-value=1.3e+02 Score=28.41 Aligned_cols=62 Identities=23% Similarity=0.428 Sum_probs=35.4
Q ss_pred ccccceeeecCCCCcceec---ccc-------ccchhhhhhhhhcccCccee-eeeecCCCCcccccCCCccchhhhhhh
Q 026043 3 RGKVELKRIENKINRQVTF---AKR-------RNGLLKKAYELSVLCDAEVA-LIIFSSRGKLYEFCSSPSMHKTLEKYE 71 (244)
Q Consensus 3 R~Ki~ik~Ien~~~RqvTF---sKR-------r~GL~KKA~ELSvLCdaeVa-lIvfS~~Gkl~ef~s~~sm~~iLeRY~ 71 (244)
.++|+|.-|.|.+.+.|.| -|| .++|+|+-. |.+- .-+- +++|.. | ..|. ++.+||+.|-
T Consensus 243 ~~~i~I~d~~D~Sd~~v~ivI~lk~~~~~~~~~~~L~k~t~-Lq~s--~~~n~~~l~~~-~--p~~~---~~~eIL~~f~ 313 (426)
T PF00521_consen 243 DKKIKISDYRDESDRGVRIVIELKRGADPEKILEGLYKKTK-LQSS--ISTNNMVLFDN-G--PKYD---SLKEILKEFY 313 (426)
T ss_dssp TTSSTEEEEEE-BBTBS-EEEEESTTSHHHHHHHHHHHHST-TEEE--EEEETEEEETT-E--EEES---SHHHHHHHHH
T ss_pred cCcchhhHHHhcCCCceeEEEEecCCccHHHHHHHHHHHhh-hhcc--ccchheEEecC-c--ceeC---CHHHHHHHHH
Confidence 4667777887778887776 333 246666532 2221 1222 344544 5 5564 5899999986
Q ss_pred hc
Q 026043 72 RC 73 (244)
Q Consensus 72 ~~ 73 (244)
.+
T Consensus 314 ~~ 315 (426)
T PF00521_consen 314 EF 315 (426)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 86
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.89 E-value=3.3e+02 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=23.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
+.++.|..+|..-++-...|.++...|+..++...
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666776666666777777777777776644
No 87
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.85 E-value=3e+02 Score=24.54 Aligned_cols=54 Identities=26% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHHhhHHHHHHHhhhh
Q 026043 92 YEEYIKLKEKHEALQHLQRQFFGED---LGRLGLEELEQLERQLGSSLGRVRSLKTR 145 (244)
Q Consensus 92 ~~E~~kLk~kie~Lq~~~r~l~Ged---L~~Ls~~EL~~LE~qLe~sL~~IR~rK~q 145 (244)
.....-|.++++..++....++-.+ |..+.-++|+.+-.+|+..|..+.++-..
T Consensus 58 ~~~~k~L~aE~~qwqk~~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~Knek 114 (268)
T PF11802_consen 58 MMRVKCLTAELEQWQKRTPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEK 114 (268)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566665555543333222 23455679999999999999988876544
No 88
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.68 E-value=4.2e+02 Score=25.63 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
.++.++..|..+++.|..++..|. +....+.++++.+|...|. -+.++.+.|+.....++..-..|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544332 2334566677777766553 344456666666666666666676
Q ss_pred HHHHH
Q 026043 170 MKLEE 174 (244)
Q Consensus 170 ~kl~e 174 (244)
.++..
T Consensus 137 ~~l~~ 141 (472)
T TIGR03752 137 RRLAG 141 (472)
T ss_pred HHHhh
Confidence 66643
No 89
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=34.27 E-value=80 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.+++|..+...|+=||+.|+++|..
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688899999999999999999876
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.93 E-value=3.7e+02 Score=28.69 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQH 107 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~ 107 (244)
.+..++.+|+.+|..|..
T Consensus 478 Q~~~et~el~~~iknlnk 495 (1195)
T KOG4643|consen 478 QLEAETEELLNQIKNLNK 495 (1195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 91
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=33.80 E-value=2.7e+02 Score=25.84 Aligned_cols=91 Identities=22% Similarity=0.267 Sum_probs=41.0
Q ss_pred ccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHH
Q 026043 62 SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRS 141 (244)
Q Consensus 62 sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~ 141 (244)
.++.+++||......-.... .-....++.++-++...|+..... ++++.+++.+|+.+-.-+..
T Consensus 8 kl~~~~~r~~el~~~L~~p~------v~~d~~~~~~lske~a~l~~iv~~----------~~~~~~~~~~l~~a~~~l~~ 71 (363)
T COG0216 8 KLESLLERYEELEALLSDPE------VISDPDEYRKLSKEYAELEPIVEK----------YREYKKAQEDLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcc------cccCHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 57788899977644322221 001122333333333333322111 23444444444444333333
Q ss_pred hhh----hchHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKT----RNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 142 rK~----ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
.++ .+..++|..++.+...|.++-+.|
T Consensus 72 ~~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 72 EKDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 344556666666665555555443
No 92
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=33.68 E-value=32 Score=27.51 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=25.9
Q ss_pred CcceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 40 DAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 40 daeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
+..++-||+ ++|++.+|..+-.+.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 555666666 799999998666899999999665
No 93
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.55 E-value=22 Score=30.62 Aligned_cols=18 Identities=33% Similarity=0.746 Sum_probs=15.0
Q ss_pred cceeeeeecCCCCccc--cc
Q 026043 41 AEVALIIFSSRGKLYE--FC 58 (244)
Q Consensus 41 aeValIvfS~~Gkl~e--f~ 58 (244)
-|-||-||||+|.|+. |+
T Consensus 4 ydraltvFSPDGhL~QVEYA 23 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYA 23 (249)
T ss_pred cccceEEECCCCCEEeeHhH
Confidence 4678999999999975 65
No 94
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=33.48 E-value=1.4e+02 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
+.+.|+.|=..-..|.++|..|+.++.....+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777778888888888887665443
No 95
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=33.32 E-value=1.2e+02 Score=22.89 Aligned_cols=24 Identities=33% Similarity=0.783 Sum_probs=17.5
Q ss_pred hcccCcceeeeeecC-----CCCcccccCC
Q 026043 36 SVLCDAEVALIIFSS-----RGKLYEFCSS 60 (244)
Q Consensus 36 SvLCdaeValIvfS~-----~Gkl~ef~s~ 60 (244)
-|-||+.+.|||-.+ +||+| |+.+
T Consensus 20 ~ie~dcnakvvvats~dpvts~kly-fscp 48 (122)
T PF05325_consen 20 PIECDCNAKVVVATSRDPVTSGKLY-FSCP 48 (122)
T ss_pred ceeccCCceEEEEeccCCcccceee-ecCc
Confidence 577999999988843 68887 4433
No 96
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=33.10 E-value=19 Score=32.12 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=25.2
Q ss_pred eeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCcc
Q 026043 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSM 63 (244)
Q Consensus 19 vTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm 63 (244)
+||.+|. ||+ +=-+..++|+.| .||.|.|+|...+
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~aa 244 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSREAA 244 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCHHHH
Confidence 5777774 865 344678888888 7899999976433
No 97
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.83 E-value=2.7e+02 Score=22.69 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+..+..+|+.+...|+++|+.|..++..
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344556777777888888888876644
No 98
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.76 E-value=1.4e+02 Score=21.53 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=27.5
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.|.|-..+.|.-||-....|.+.|..|......
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667789999999999999999999988775
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=31.93 E-value=3.1e+02 Score=23.07 Aligned_cols=53 Identities=26% Similarity=0.280 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
.+..|+.+++.+-+..+. ....-...+.+++.....|+++...|..+|.+.++
T Consensus 140 ki~~Lek~leL~~k~~~r-ql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 140 KIQELEKQLELENKSFRR-QLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555444332 12222334455666667777777788887777654
No 100
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=31.73 E-value=1.8e+02 Score=22.60 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++|++|+..+-...+..-... ..-.+++.+++..+..+...|+..-..|..++..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999888765433221111 1123456667777777776666666666555543
No 101
>PHA03155 hypothetical protein; Provisional
Probab=31.70 E-value=72 Score=24.67 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+++|..+...|+=||+.|++++..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578888888999999999999854
No 102
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=31.60 E-value=6.4 Score=27.31 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=28.9
Q ss_pred hhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccccc
Q 026043 34 ELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGT 77 (244)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~ 77 (244)
||-|++= ||||||+|+ ||.+.. .++-+.+..|++.....
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~--r~lGk~ir~fkk~~~~~ 46 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLG--QALGGAIRNFKKASNEE 46 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHH--HHHHHHHHHHHHHcccc
Confidence 4555443 789999987 898887 36888888888775543
No 103
>PHA01750 hypothetical protein
Probab=31.57 E-value=1.8e+02 Score=20.28 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=5.9
Q ss_pred hHHHHHHHHHH
Q 026043 147 QLDKLSELQRK 157 (244)
Q Consensus 147 ~~~~i~~L~~k 157 (244)
+.+++.++++|
T Consensus 61 l~~qv~eik~k 71 (75)
T PHA01750 61 LSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHh
Confidence 45555555554
No 104
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=31.49 E-value=1.7e+02 Score=26.22 Aligned_cols=39 Identities=21% Similarity=0.490 Sum_probs=30.2
Q ss_pred CCcceeccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 026043 15 INRQVTFAKRRNGL---------LKKAYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 15 ~~RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIvfS~~Gk 53 (244)
+.|-|.||+-|+.| +-+--.++|-||-|.-..|.-++|+
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~ 227 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGP 227 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCC
Confidence 56778888888844 4455689999999987777777776
No 105
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=31.36 E-value=2.1e+02 Score=28.82 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRN---QLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql---~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.|..|+++-+.-+...+.++.++ ..++++.||.-.+.|++|++.|.-......
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666666666666666666554 457888899999999999999988765543
No 106
>PHA03155 hypothetical protein; Provisional
Probab=31.32 E-value=2.5e+02 Score=21.75 Aligned_cols=58 Identities=19% Similarity=0.104 Sum_probs=43.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhh
Q 026043 87 ETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKT 144 (244)
Q Consensus 87 ~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ 144 (244)
..+.+..|+.+|+-++..|.+..++-.+.+=..|+..+=+-+-...-.+|...-++|.
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KI 66 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKI 66 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999988887766445555668888888887787777777766663
No 107
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.02 E-value=4.2e+02 Score=24.27 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=70.1
Q ss_pred eccccccchhhhhhhhhcccCcceeeeeecCCCCcccccC--CCccchhhhhhhhcccccccccccchhHhhhhHHHHHH
Q 026043 20 TFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS--SPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIK 97 (244)
Q Consensus 20 TFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s--~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~k 97 (244)
++-.|..+|-||-.|+--.|+ ..|.+--++. ..++..+|..++.... ....+...+.+.+..
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk-------~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNK-------KLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 345677788888777763332 2232222221 2256667766654321 122233456666666
Q ss_pred HHHHHHHHHHHHHH--hhcCCCCCCC-HHHHHHHHHHHhhHHHHHHH----------hhhhchHHHHHHHHHH-------
Q 026043 98 LKEKHEALQHLQRQ--FFGEDLGRLG-LEELEQLERQLGSSLGRVRS----------LKTRNQLDKLSELQRK------- 157 (244)
Q Consensus 98 Lk~kie~Lq~~~r~--l~GedL~~Ls-~~EL~~LE~qLe~sL~~IR~----------rK~ql~~~~i~~L~~k------- 157 (244)
++..+..|+..+.. ..++.++... +.|=.+|-.+||.+=.++.. -|.+++.+. +..+.|
T Consensus 98 ~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER-D~yk~K~~RLN~E 176 (319)
T PF09789_consen 98 AQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER-DAYKCKAHRLNHE 176 (319)
T ss_pred HhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 66666666554332 2223333222 25555555555554444433 333333222 233333
Q ss_pred --------------HHHHHHHHHHHHHHHHHHH
Q 026043 158 --------------EEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 158 --------------e~~L~eeN~~L~~kl~e~~ 176 (244)
...|..||++|..+|...+
T Consensus 177 Ln~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 177 LNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3347788999999886544
No 108
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=30.95 E-value=29 Score=26.05 Aligned_cols=29 Identities=34% Similarity=0.321 Sum_probs=20.6
Q ss_pred hhhhhhcccCcceeeeeecCCCCcccccCC
Q 026043 31 KAYELSVLCDAEVALIIFSSRGKLYEFCSS 60 (244)
Q Consensus 31 KA~ELSvLCdaeValIvfS~~Gkl~ef~s~ 60 (244)
|-.||--+-+| +|.=.|||+|||.+|-++
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 44555555555 455679999999999864
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.80 E-value=3.1e+02 Score=22.72 Aligned_cols=49 Identities=24% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHhhHHHHHHHhhhhchH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 125 LEQLERQLGSSLGRVRSLKTRNQL--DKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 125 L~~LE~qLe~sL~~IR~rK~ql~~--~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+.+|+..|...=+.+-.-+++++. =+...+..|-..|++||..|-..+.
T Consensus 132 ~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 132 IKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333344322 2334466777788888888766543
No 110
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=30.45 E-value=5.8e+02 Score=26.18 Aligned_cols=39 Identities=23% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 026043 126 EQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEA 164 (244)
Q Consensus 126 ~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~ee 164 (244)
.|.+.-|+..|.++..-...-+.+++++|+++-..|+.-
T Consensus 421 ~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 421 IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666778888877777777777777777776555544
No 111
>PHA03162 hypothetical protein; Provisional
Probab=30.41 E-value=75 Score=25.21 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.+++|..+...|+=||+.|+++|..
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888999999999999855
No 112
>smart00030 CLb CLUSTERIN Beta chain.
Probab=30.35 E-value=1.9e+02 Score=24.71 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhhh---------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLKT---------RNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~---------ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
|..||..-=..+..++++||.-|..-|+ +-|+..++.-+++-......-+....+|.+.+.
T Consensus 9 Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~ 78 (206)
T smart00030 9 LQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQG 78 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566777777777765552 234444444444333333333344556665443
No 113
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.22 E-value=3e+02 Score=22.36 Aligned_cols=85 Identities=22% Similarity=0.233 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--hhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc---------hHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQ--FFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRN---------QLDKLSELQRK 157 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~--l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql---------~~~~i~~L~~k 157 (244)
..++..+..++..+..++...++ -+|++ |.+-|-.+|.-.-..-..+|.+|-.+| -...+...+.|
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~---L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keK 85 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKEELGEG---LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEK 85 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666665443 35654 555555555555555555555554433 23455677888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026043 158 EEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 158 e~~L~eeN~~L~~kl~e~~ 176 (244)
...+..++..++..|....
T Consensus 86 l~~~~~~~~~l~~~l~~~~ 104 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDRE 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888876543
No 114
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.20 E-value=31 Score=26.46 Aligned_cols=26 Identities=38% Similarity=0.337 Sum_probs=20.3
Q ss_pred hhhhcccCcceeeeeecCCCCcccccC
Q 026043 33 YELSVLCDAEVALIIFSSRGKLYEFCS 59 (244)
Q Consensus 33 ~ELSvLCdaeValIvfS~~Gkl~ef~s 59 (244)
.+|-.|-+| +|...||++|++.+|-.
T Consensus 4 ~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 4 DKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 466667776 56688999999999875
No 115
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.05 E-value=1.8e+02 Score=21.72 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++++.|+..+-...+. ..-..++..+++.+.++...|+..-..|..++
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887655442 33344556666666666666655555555443
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.94 E-value=2.9e+02 Score=22.11 Aligned_cols=44 Identities=27% Similarity=0.169 Sum_probs=28.0
Q ss_pred hhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 133 GSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 133 e~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
+.-|..+|+-|..+ ...+...|.+...|.--|..+...|...+.
T Consensus 72 ~~EL~~l~sEk~~L-~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 72 ELELDTLRSEKENL-DKELQKKQEKVSELESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33455566666544 355566777777787777777777765543
No 117
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=29.82 E-value=1.3e+02 Score=23.90 Aligned_cols=54 Identities=13% Similarity=0.007 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+..+-..+...-...-..-.+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999998876543221111112223555666666666666666666665544
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.76 E-value=3.8e+02 Score=23.43 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
|.+..++++.|-..++.+|..|.+.+.+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~elee 160 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEE 160 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 119
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.74 E-value=1.3e+02 Score=27.32 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
-.+||..|-..| .+||.||.||+ ++|+.|+.......++-..|.
T Consensus 8 p~~Ls~~E~~eL--------~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~~ 51 (395)
T KOG0930|consen 8 PNDLSEEERMEL--------ENIRRRKQELL-DEIQRLKDEIAEVMEEIDNLE 51 (395)
T ss_pred CCCCCHHHHHhH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc
Confidence 456777776655 57899998875 678888877666666554443
No 120
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.62 E-value=2.4e+02 Score=20.94 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+...++.+.++...+..+-..|+.+|.+.
T Consensus 75 le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 75 IELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666553
No 121
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=29.56 E-value=28 Score=23.93 Aligned_cols=31 Identities=13% Similarity=0.442 Sum_probs=22.8
Q ss_pred cCcceeeeeecCCCCcccccCCCccchhhhhh
Q 026043 39 CDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 70 (244)
Q Consensus 39 CdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY 70 (244)
|+..-.++|. |.|..|...++..+..||+.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 7666666666 678888888766788888753
No 122
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.35 E-value=5.9e+02 Score=27.30 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred eeeeecCCCCcccccCCCccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHH
Q 026043 44 ALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLE 123 (244)
Q Consensus 44 alIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~ 123 (244)
+.-+|.++|..--|..+. |+-++....... .+.........++..|+.+.+.++. .+.
T Consensus 621 ~~~aytldg~~~~~~g~~--------~~~ySt~~~~~r-~~~~~~~s~d~~ie~le~e~~~l~~-------------~~~ 678 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGPN--------YRVYSTRGTRAR-RPGVDEFSFDDEIEDLEREASRLQK-------------EIL 678 (1074)
T ss_pred ceeeeccCccccccCCCC--------cceeccCCCCCC-CccccchhHhHHHHHHHHHHHHHHH-------------HHH
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
+|+.-..+.+..|..++ ++...+..++..++++-+.+.-+-..|+
T Consensus 679 ~l~~~~~~~e~~l~e~~-~~~~~l~~~~~q~~~~~~~~~~em~el~ 723 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELE-KKLRELSEHIEQIKRRIRKKRAEMTELK 723 (1074)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 123
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.29 E-value=1.2e+02 Score=21.22 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.+..++..++++...++++|..|+.++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888999999999998765
No 124
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=28.19 E-value=77 Score=20.75 Aligned_cols=18 Identities=39% Similarity=0.259 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHHHHHh
Q 026043 116 DLGRLGLEELEQLERQLG 133 (244)
Q Consensus 116 dL~~Ls~~EL~~LE~qLe 133 (244)
-|..+|++||++.-..||
T Consensus 4 fLk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGGS-HHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCC
Confidence 356788888876444333
No 125
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=27.97 E-value=2.2e+02 Score=22.37 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
++|++|+.++-...+..=... ....+++.+++.++..+...|+..-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999888765443211111 111245666777777777777776666666543
No 126
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=27.76 E-value=3.8e+02 Score=22.72 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRNQLDKL-SELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i-~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
++|...+|.+.. .|.+.=-.+.+.+...+ ...|++...|.+++..-++.|.+..
T Consensus 47 mkeW~eaE~~~~-~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~H 101 (193)
T PF12925_consen 47 MKEWSEAEERYK-ELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVETH 101 (193)
T ss_dssp HHHHHHHHHTTT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888877 55666667777766554 4588899999999999999987643
No 127
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.66 E-value=2.6e+02 Score=24.76 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026043 133 GSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAAR 179 (244)
Q Consensus 133 e~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~~ 179 (244)
..++++=|.+..+.. .+++.|...|..||..|+.++++..++.
T Consensus 203 N~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~el 245 (269)
T KOG3119|consen 203 NEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKKEL 245 (269)
T ss_pred hHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433332 6778888999999999999988876553
No 128
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=27.49 E-value=3.2e+02 Score=24.35 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchH--H------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQL--D------------------KLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~--~------------------~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+--+-+.+|+.-|.++++.|.|+-. - .++++-.+-....|-|.+|...|.|.
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEk 159 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEK 159 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445667777777888877766421 0 12223333344566777777776653
No 129
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=27.36 E-value=3e+02 Score=21.44 Aligned_cols=57 Identities=26% Similarity=0.169 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHhhHHHHHHHhhh
Q 026043 88 TQASYEEYIKLKEKHEALQHLQRQFFG----EDLGRLGLEELEQLERQLGSSLGRVRSLKT 144 (244)
Q Consensus 88 ~q~~~~E~~kLk~kie~Lq~~~r~l~G----edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ 144 (244)
.+.+..++.+|+-++..|.+..++-.| .+-..|+..+=+-+-...-.+|...-++|.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KI 65 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKI 65 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999888888776 556678888888888888888777776663
No 130
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.28 E-value=1.5e+02 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=25.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
|+..++.+-|+++.-.+.++|..|...|.....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888899888888877543
No 131
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.22 E-value=7.9e+02 Score=26.38 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=13.8
Q ss_pred eecCCCCcccccCCCccchhhhhhhhc
Q 026043 47 IFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 47 vfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
||.|.|-|.-=+.+.+. ++|..++..
T Consensus 654 V~dP~GtlTGGs~~~~a-~~L~~l~~l 679 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGA-DLLRQLQKL 679 (1174)
T ss_pred eeCCCCcccCCCCCCcc-cHHHHHHHH
Confidence 57788877653333232 255555544
No 132
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.15 E-value=2.3e+02 Score=21.45 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+..+-...+.+-... ....+++.+++..+.++...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888765544321011 11234555555666655555555555554433
No 133
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.15 E-value=2e+02 Score=27.17 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=39.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH----HHHHhhHHHHHHHhhhhchHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQL----ERQLGSSLGRVRSLKTRNQLDKLSELQRKEE 159 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~L----E~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~ 159 (244)
+.+++.+.+++++|...+..--. ++.|.-.| .++=-.-++.+-+||+|.-...|+.|++|-.
T Consensus 7 ~~l~~Ki~~~~eqi~~e~~~rd~---------nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~ 72 (395)
T PF10267_consen 7 DHLQQKILKLKEQIKVEQTARDE---------NVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLE 72 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 36677777777777666543211 11121111 1222356788889999999999999999943
No 134
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.92 E-value=4.6e+02 Score=23.41 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--CCCCC---CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026043 94 EYIKLKEKHEALQHLQRQFFG--EDLGR---LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 94 E~~kLk~kie~Lq~~~r~l~G--edL~~---Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
+...+++..+.|++..|.|-- ++|+. -.+=-|.++|+.|+.++.++----.+|. +-+.|-.-.+.|.++...|
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd--Eke~llesvqRLkdEardl 176 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD--EKEVLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555432 22321 1233466778888888876653332222 2223444566788888888
Q ss_pred HHHHHHHH
Q 026043 169 SMKLEEIN 176 (244)
Q Consensus 169 ~~kl~e~~ 176 (244)
+..+.-..
T Consensus 177 rqelavr~ 184 (333)
T KOG1853|consen 177 RQELAVRT 184 (333)
T ss_pred HHHHHHHH
Confidence 88876544
No 135
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=26.85 E-value=1.5e+02 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRL 120 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~L 120 (244)
....+..+++.+.+.+-...|.-+|.+.++|
T Consensus 162 ~~~~~~qh~~~~~eavcpVcre~i~~e~~sl 192 (368)
T KOG4445|consen 162 DAQKERQHMKEQVEAVCPVCRERIKIEENSL 192 (368)
T ss_pred HHHHHHHHhhhhHhhhhhHhhhhccccccce
Confidence 3444444555566666555666667666665
No 136
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=26.80 E-value=2.9e+02 Score=21.03 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhHHHHH--HHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRV--RSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~I--R~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+++++++..+-...+.+-... .....+++.+++..|+.+...|++.-..|..++..
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887766544322111 11223566777777777777777777777666654
No 137
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=26.71 E-value=40 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=20.6
Q ss_pred hhcccCcceeeeeecCCCCccccc
Q 026043 35 LSVLCDAEVALIIFSSRGKLYEFC 58 (244)
Q Consensus 35 LSvLCdaeValIvfS~~Gkl~ef~ 58 (244)
+.++|||||-++|-+.+.+-.-||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 567899999999999988877776
No 138
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.70 E-value=2.6e+02 Score=20.42 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHH---HHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLER---QLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 117 L~~Ls~~EL~~LE~---qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
.+..+..|...+.. +|..+|.++-.|. ..|..+-+.|.+.|+.-|.++.+.
T Consensus 20 ~~e~~~~E~~~ins~LD~Lns~LD~LE~rn--------D~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 20 DDEFDEEEYAAINSMLDQLNSCLDHLEQRN--------DHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433 4456667776665 445566778899999999888763
No 139
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=26.67 E-value=2.6e+02 Score=21.44 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+.++-...+..-.... .-..++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRASA-DVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999887554332111111 1124566666666666666665555555544
No 140
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.65 E-value=7.2e+02 Score=25.58 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRK 157 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~k 157 (244)
.|+..+...|+.-+..++.+|.+++.+--.+.++-
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~ 573 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLELEKEAQEA 573 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666777777777777777777665444444433
No 141
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=26.44 E-value=1.3e+02 Score=25.11 Aligned_cols=18 Identities=44% Similarity=0.545 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRS 141 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~ 141 (244)
||+.||.||+.-+-.||.
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 677778888777777764
No 142
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=26.09 E-value=29 Score=24.39 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.5
Q ss_pred cCcceeeeeecCCCCcccccCCCccchhhhhh
Q 026043 39 CDAEVALIIFSSRGKLYEFCSSPSMHKTLEKY 70 (244)
Q Consensus 39 CdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY 70 (244)
|+...+++| .|.+|...++..+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 877777777 38888887766788888764
No 143
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.95 E-value=7e+02 Score=27.28 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhh------hhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLK------TRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK------~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
.++++|+.--..++..+..++..- .+-+..+|..|+.+...+.+....+...+.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666665555555555553321 122346666666666555555555555443
No 144
>smart00338 BRLZ basic region leucin zipper.
Probab=25.88 E-value=1.6e+02 Score=19.76 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
.+..+...|+.+...|..++..|+..+
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456667777777777777776654
No 145
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=25.61 E-value=95 Score=19.83 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=13.3
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+.+..+.-.|.+|.++.-.|..||..|+..+.
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34556677788888888889999999988753
No 146
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=25.58 E-value=3.1e+02 Score=26.18 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred cchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHh
Q 026043 63 MHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSL 142 (244)
Q Consensus 63 m~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~r 142 (244)
|.+..+.|+++ ....+.+.--.++..+..+.+.+..+.+.++ --+++|..=+..|+..|...+.+
T Consensus 155 ~~~e~~~Y~~~---------l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~------q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 155 AEDEVDTYKAC---------LQRLEQQNQDVSEEDLLKELKNLKEEEERLL------QQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHH---------HHHHhhcCcccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 143 KTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 143 K~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
|.++ .+++.....+.|...+..+.
T Consensus 220 ~~~~-------~e~~~~~~~ey~~~~~q~~~ 243 (447)
T KOG2751|consen 220 AERL-------NEEEDQYWREYNNFQRQLIE 243 (447)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHhhhc
No 147
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=25.55 E-value=3.7e+02 Score=21.93 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 121 s~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
+-.|+.+++..+...+..+|.--..+-..++..++.....|+.+-..|+.++
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666655444444444444444444444444444443
No 148
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=25.46 E-value=2.9e+02 Score=20.65 Aligned_cols=23 Identities=30% Similarity=0.124 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
....|+.....+.+.|.....-+
T Consensus 89 ~~~~l~~~~~~~~~~n~~N~~ll 111 (143)
T PF05130_consen 89 LWRELRELLEELQELNERNQQLL 111 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 149
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.46 E-value=3.5e+02 Score=21.52 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
-++.||..|+.+=.+++..-..+ .....+.+-++.+.|..+...+..++.+..
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556666666655555544443 234455667777777777777777776644
No 150
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.42 E-value=1.3e+02 Score=23.10 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
+..+++.|++....|.|||..|+-..+...
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~LR 49 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKLR 49 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHHH
Confidence 457899999999999999999998765533
No 151
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.04 E-value=2.3e+02 Score=23.73 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=0.0
Q ss_pred cchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcC--CCC-CCCHHHHHHHHHHHhhHHHHHHHh
Q 026043 83 QSAKETQASYEEYIKLKEKHEALQHLQRQFFGE--DLG-RLGLEELEQLERQLGSSLGRVRSL 142 (244)
Q Consensus 83 ~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~Ge--dL~-~Ls~~EL~~LE~qLe~sL~~IR~r 142 (244)
..+.+.+.+..++.+|.+++..|+...+.+-.| .|+ .|++.|++.=-+.|..-...-|.|
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
No 152
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.93 E-value=5.1e+02 Score=23.31 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhHHHHHHHhh
Q 026043 124 ELEQLERQLGSSLGRVRSLK 143 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK 143 (244)
.|..||..|+..-.++-.-|
T Consensus 40 QleSlEAaLqKQKqK~e~ek 59 (307)
T PF10481_consen 40 QLESLEAALQKQKQKVEEEK 59 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 55666666666555555444
No 153
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.88 E-value=1.2e+02 Score=19.54 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEAN 165 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN 165 (244)
+-++|.+|++|.+.|..+.
T Consensus 24 id~qIaeLe~KR~~Lv~qH 42 (46)
T PF08946_consen 24 IDEQIAELEAKRQRLVDQH 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4577888888877776554
No 154
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.86 E-value=4e+02 Score=22.02 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
+.+|......|..+|..+. ..+-...+|..|++....|-+.-+.+.+.|.+..
T Consensus 4 ~~~L~~~d~~L~~~L~~l~--~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~ 56 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQ--EHQENQARIQQLRAEIEELDEQIRDILKQLKEAR 56 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777764 3445556666666665555555555555555443
No 155
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.84 E-value=2.4e+02 Score=21.19 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhhHH---HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSL---GRVRSLKTRNQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL---~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
++|++|+.++-...+..- ... ....+++.+++..+..+...|+..-..|..
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 109 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDA 109 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888765543321 111 111245555555555555555554444443
No 156
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.74 E-value=2.8e+02 Score=21.29 Aligned_cols=53 Identities=17% Similarity=0.026 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+.++-...+..-... ..-.+++..+++.+.++...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999888754322211111 11234666777777777777777666666544
No 157
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=24.61 E-value=3.7e+02 Score=21.59 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
|.+.||..-...+.+|+.++.+| +++...+-=-+.|.+-|+.+..
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888888887654 1222222223455566655544
No 158
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.33 E-value=5.6e+02 Score=25.33 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHL 108 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~ 108 (244)
.+..++.+|+.+++.+...
T Consensus 110 ~~e~ei~kl~~e~~elr~~ 128 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKK 128 (546)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3444555555555554443
No 159
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=24.28 E-value=8.3e+02 Score=25.50 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=8.3
Q ss_pred eecCCCCcccccC
Q 026043 47 IFSSRGKLYEFCS 59 (244)
Q Consensus 47 vfS~~Gkl~ef~s 59 (244)
.|-+-|++-.|.+
T Consensus 139 ~~~~q~~~~~~~~ 151 (1179)
T TIGR02168 139 SIIEQGKISEIIE 151 (1179)
T ss_pred hheecccHHHHHc
Confidence 3456777777763
No 160
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.22 E-value=2.2e+02 Score=27.23 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhh---------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLK---------TRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK---------~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
|..||..--..+..++++||.-|..-| .+-++..++..+++-+.....-+....+|+|.+
T Consensus 3 Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e 71 (436)
T PF01093_consen 3 LKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEE 71 (436)
T ss_pred hHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554333 233444444444433333333334455555443
No 161
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=24.07 E-value=4.3e+02 Score=22.06 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMK 171 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~k 171 (244)
.+...|+..++.-=+.|.+.+.+.+.+.++.|+.+-..+..+-.....+
T Consensus 112 ~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~eme 160 (181)
T PF04645_consen 112 KEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREME 160 (181)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666656555555555544444444444333
No 162
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=24.06 E-value=2.2e+02 Score=24.11 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHhhH----------HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 109 QRQFFGEDLGRLGLEELEQLERQLGSS----------LGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 109 ~r~l~GedL~~Ls~~EL~~LE~qLe~s----------L~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
+..+-.|+|-.+|.+||..--...|.- |-+==.|+-|....+|..||.--+.|+++|..|+.-+
T Consensus 5 l~~~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 5 LSKVSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred cccCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.73 E-value=5.8e+02 Score=23.49 Aligned_cols=42 Identities=31% Similarity=0.496 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHH
Q 026043 93 EEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVR 140 (244)
Q Consensus 93 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR 140 (244)
.|...|.++...||...+.+. -.++|+..+...--.++++=|
T Consensus 4 eEW~eL~~efq~Lqethr~Y~------qKleel~~lQ~~C~ssI~~Qk 45 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYK------QKLEELSKLQDKCSSSISHQK 45 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666553 223455555554444444433
No 164
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=23.59 E-value=2.9e+02 Score=21.12 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+++++|+.++-...+..-... ..-.+++.+++..+.++...|++....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999888755433211111 112345667777777777777777766666554
No 165
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.34 E-value=4.4e+02 Score=26.05 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred hhcccCcceeeeeecCCCCcccccC---CCccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHH
Q 026043 35 LSVLCDAEVALIIFSSRGKLYEFCS---SPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQ 111 (244)
Q Consensus 35 LSvLCdaeValIvfS~~Gkl~ef~s---~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~ 111 (244)
..+.|+-.+|-+.+++.-.-+.+.- ...|.++|--++.....+...+ ....+...+.+|+.+++.++...+.
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~-----rer~l~a~t~kL~~E~e~~q~~~~~ 478 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGS-----RERSLVAATEKLRQEFEELQQTSRR 478 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcC-----CccchHHHHHHHHHHHHHHHHHHhh
Confidence 4556777777666655332222210 1134444444433322221111 1125666778888888877765443
No 166
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.33 E-value=2.4e+02 Score=21.86 Aligned_cols=53 Identities=15% Similarity=0.009 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHhh-HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGS-SLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~-sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+..+-..... .-... ..-..++.+++..++++...|+.-...|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899998887654311 00001 11234666777777777766666655555544
No 167
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.27 E-value=1.8e+02 Score=21.12 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
.+..+++.+++....|+++|..|+-++...
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445668999999999999999999987653
No 168
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.21 E-value=3.7e+02 Score=21.11 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=6.1
Q ss_pred ecCCCCccccc
Q 026043 48 FSSRGKLYEFC 58 (244)
Q Consensus 48 fS~~Gkl~ef~ 58 (244)
|.+.|.++.+.
T Consensus 16 ~~~~~~~~~~~ 26 (151)
T PF11559_consen 16 YPSDGLLFDSA 26 (151)
T ss_pred CCCCCccCccc
Confidence 44555566555
No 169
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=23.20 E-value=2.3e+02 Score=22.25 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+..+-......-...-.....++.+++..+.++...|.+....|...+
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888754321100000011234566666666666666665555555444
No 170
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=23.19 E-value=42 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=16.7
Q ss_pred hhhhhhhhhcccCcceeeeee
Q 026043 28 LLKKAYELSVLCDAEVALIIF 48 (244)
Q Consensus 28 L~KKA~ELSvLCdaeValIvf 48 (244)
|++.+..-+=||+++..|.||
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy 22 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVY 22 (47)
T ss_pred hhHHcCCcccCcCCCCCceEE
Confidence 445566668899999999988
No 171
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=23.18 E-value=11 Score=25.00 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.2
Q ss_pred eeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 43 VALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
|+||||+|. ||.+... ++-+.+..|++...
T Consensus 14 i~llvFGp~-KLP~l~r--~lG~~i~~Fk~~~~ 43 (51)
T PRK01470 14 IIFVLFGAG-KLPQVMS--DLAKGLKAFKDGMK 43 (51)
T ss_pred HHHHhcCch-HhHHHHH--HHHHHHHHHHHHhc
Confidence 789999984 9998873 57888888877543
No 172
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.17 E-value=3e+02 Score=21.03 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
++|++|+.++-...+..-.. ......++..++..+.++...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNRT-SADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CCCHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999988875533221111 1112234556666777776666666666665543
No 173
>PRK14127 cell division protein GpsB; Provisional
Probab=23.14 E-value=2.4e+02 Score=21.64 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 116 DLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 116 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
.+-+++.+|....-.++-. .++.|.+....|.++|..|+.++.+...
T Consensus 19 ~~RGYd~~EVD~FLd~V~~---------------dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVIK---------------DYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888887776554432 4556666677788888888888887664
No 174
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=23.10 E-value=31 Score=23.66 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=22.2
Q ss_pred cccccchhhhhhhhhcccC-cceeeeeecCCCCc
Q 026043 22 AKRRNGLLKKAYELSVLCD-AEVALIIFSSRGKL 54 (244)
Q Consensus 22 sKRr~GL~KKA~ELSvLCd-aeValIvfS~~Gkl 54 (244)
..||.|.+.+ |.||-+| .+=.+-||+..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688886655 8888886 57778888888875
No 175
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.08 E-value=7.1e+02 Score=25.57 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhh-chHHHHHHHH-----------HHHH
Q 026043 92 YEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTR-NQLDKLSELQ-----------RKEE 159 (244)
Q Consensus 92 ~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~q-l~~~~i~~L~-----------~ke~ 159 (244)
..+|..++..++.|+...+.+- -+.+++.. .-|.++.|+.=-.|-.+ .+..++++|+ ++|.
T Consensus 536 ~~~~~~sr~~~~~le~~~~a~q------at~d~a~~-Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd 608 (961)
T KOG4673|consen 536 KDYYSNSRALAAALEAQALAEQ------ATNDEARS-DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED 608 (961)
T ss_pred HHhhhhHHHHHHHHHHHHHHHH------Hhhhhhhh-hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026043 160 MLLEANNILSMKLEEIN 176 (244)
Q Consensus 160 ~L~eeN~~L~~kl~e~~ 176 (244)
++..+|..|...+++.+
T Consensus 609 ~~R~Ei~~LqrRlqaaE 625 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAE 625 (961)
T ss_pred HHHHHHHHHHHHHHHHH
No 176
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=22.95 E-value=4.8e+02 Score=22.21 Aligned_cols=73 Identities=23% Similarity=0.226 Sum_probs=0.0
Q ss_pred hhHhhhhHHHHHHHHHHHHHH--HHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHH
Q 026043 85 AKETQASYEEYIKLKEKHEAL--QHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEM 160 (244)
Q Consensus 85 ~~~~q~~~~E~~kLk~kie~L--q~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~ 160 (244)
......+..++.+++++++.+ ++...+. -...+|..||..+...+.++-.-.... |..+|..++++...
T Consensus 142 e~~~~~le~~l~~~k~~ie~vN~~RK~~Q~-------~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 142 EAMLKRLEKELAKLKKEIEEVNRERKRRQE-------EAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 026043 161 LLEA 164 (244)
Q Consensus 161 L~ee 164 (244)
+++.
T Consensus 215 ~~~~ 218 (221)
T PF05700_consen 215 LKEN 218 (221)
T ss_pred Hhcc
No 177
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.93 E-value=4.1e+02 Score=21.44 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANN 166 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~ 166 (244)
++..|..||..+=+.|..-|.. ..-+++|+.+...|+..|.
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~--~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKS--AKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 5556666666655555555542 2234566666666666666
No 178
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.90 E-value=1.9e+02 Score=28.87 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHL 108 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~ 108 (244)
.++.|+.++..++|.|++.
T Consensus 104 el~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 4445555555555555443
No 179
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=22.89 E-value=2e+02 Score=17.92 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHH
Q 026043 98 LKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGR 138 (244)
Q Consensus 98 Lk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~ 138 (244)
|..+|+.++...-.+.... +++-.+.-.+-++||.-+..
T Consensus 2 L~~~Ie~~R~~L~~~~~~~--~l~~~~vl~~Sq~LD~lI~~ 40 (45)
T PF09388_consen 2 LLEEIEELRQELNELAEKK--GLTDPEVLELSQELDKLINE 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 4556666666655554333 77788888888888876654
No 180
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=22.88 E-value=1.5e+02 Score=17.59 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQR 156 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ 156 (244)
.|..|+..++.+...-+=-+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 355666666666665555555555555555543
No 181
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=22.83 E-value=1.2e+02 Score=21.12 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhc
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRN 146 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql 146 (244)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6689999999999999999988764
No 182
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=2.9e+02 Score=27.63 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=24.0
Q ss_pred ccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcc
Q 026043 5 KVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLY 55 (244)
Q Consensus 5 Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ 55 (244)
.|.|+.++-+.-.-+..+.||.-|+ .-|--|+-+||-|.+-+|.+.
T Consensus 222 ~V~I~pV~r~rief~pl~~~r~~lI-----VGIDPGiTtgiAvldldGevl 267 (652)
T COG2433 222 QVRIEPVERDRIEFVPLRPERRSLI-----VGIDPGITTGIAVLDLDGEVL 267 (652)
T ss_pred EEEEEEhhhcccccccCcccccceE-----EEeCCCceeeEEEEecCCcEE
Confidence 3555555544444444444443100 113346678888888787753
No 183
>PRK03918 chromosome segregation protein; Provisional
Probab=22.78 E-value=7.9e+02 Score=25.13 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 026043 122 LEELEQLERQLG 133 (244)
Q Consensus 122 ~~EL~~LE~qLe 133 (244)
.+++..++..++
T Consensus 658 ~~~~~~l~~~~~ 669 (880)
T PRK03918 658 EEEYEELREEYL 669 (880)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 184
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=45 Score=28.93 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=18.7
Q ss_pred hcccCcceeeeeecCCCCccc--ccC
Q 026043 36 SVLCDAEVALIIFSSRGKLYE--FCS 59 (244)
Q Consensus 36 SvLCdaeValIvfS~~Gkl~e--f~s 59 (244)
||=.+-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 345677888999999999986 553
No 185
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.70 E-value=1.6e+02 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
..+++..|++....|..||..|++.+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888899999998888653
No 186
>PHA03162 hypothetical protein; Provisional
Probab=22.69 E-value=4e+02 Score=21.21 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcCC----CCCCCHHHHHHHHHHHhhHHHHHHHhhhh
Q 026043 88 TQASYEEYIKLKEKHEALQHLQRQFFGED----LGRLGLEELEQLERQLGSSLGRVRSLKTR 145 (244)
Q Consensus 88 ~q~~~~E~~kLk~kie~Lq~~~r~l~Ged----L~~Ls~~EL~~LE~qLe~sL~~IR~rK~q 145 (244)
.+.+..|+.+|+-++..|.+..+.-.|.+ =..|+..+=+-+-...-.+|...-++|.+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988887665554 22488888777777777777777666643
No 187
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.64 E-value=30 Score=25.15 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.1
Q ss_pred hhhhhcccCcceeeeeecCCCCccc
Q 026043 32 AYELSVLCDAEVALIIFSSRGKLYE 56 (244)
Q Consensus 32 A~ELSvLCdaeValIvfS~~Gkl~e 56 (244)
+.-++|-||.+=++|-+|.+|.||-
T Consensus 16 ~tS~~Vs~~~~gs~ValS~dg~l~G 40 (81)
T PF03785_consen 16 QTSISVSCDVPGSYVALSQDGDLYG 40 (81)
T ss_dssp -SEEEEEESSTT-EEEEEETTEEEE
T ss_pred ccEEEEEecCCCcEEEEecCCEEEE
Confidence 4557899999999999999998874
No 188
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=22.45 E-value=1.1e+03 Score=26.26 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred eeeecCCCCcccccCCCccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHH--------------
Q 026043 45 LIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQR-------------- 110 (244)
Q Consensus 45 lIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r-------------- 110 (244)
+++|.++|++..|. ++.+||+.|-.+ ....-.......+.+|..+++.|....|
T Consensus 963 m~~~d~~g~i~~~~---~~~~Il~~f~~~---------Rl~~y~kR~~~~l~~l~~~~~~l~~~~rFI~~vi~~~i~i~~ 1030 (1388)
T PTZ00108 963 MVLFDENGKIKKYS---DALDILKEFYLV---------RLDLYKKRKEYLLGKLERELARLSNKVRFIKHVINGELVITN 1030 (1388)
T ss_pred EEEEeCCCCcceeC---CHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeEEcc
Q ss_pred -----------------------------------------------------------HhhcCCCCCCCHHHHHHHHHH
Q 026043 111 -----------------------------------------------------------QFFGEDLGRLGLEELEQLERQ 131 (244)
Q Consensus 111 -----------------------------------------------------------~l~GedL~~Ls~~EL~~LE~q 131 (244)
.|++-.|-+|+.++...|..+
T Consensus 1031 ~~k~~l~~~L~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~i~sLT~e~v~kL~~e 1110 (1388)
T PTZ00108 1031 AKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAE 1110 (1388)
T ss_pred CCHHHHHHHHHHcCCCccchhhhhcccccccccccccccccccccccccccccchhhhHHHhcCCHHhhhHHHHHHHHHH
Q ss_pred HhhHHHHHHHhhhh----chHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 132 LGSSLGRVRSLKTR----NQLDKLSELQRKEEMLLEANNILSMK 171 (244)
Q Consensus 132 Le~sL~~IR~rK~q----l~~~~i~~L~~ke~~L~eeN~~L~~k 171 (244)
++.....+..-+.. ++.+.++.+.++-....++-.....+
T Consensus 1111 ~~~~~~e~~~L~~~t~~~lw~~DL~~~~~~~~~~~~~~~~~~~~ 1154 (1388)
T PTZ00108 1111 LEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154 (1388)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 189
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=50 Score=28.50 Aligned_cols=18 Identities=33% Similarity=0.689 Sum_probs=15.0
Q ss_pred cCcceeeeeecCCCCccc
Q 026043 39 CDAEVALIIFSSRGKLYE 56 (244)
Q Consensus 39 CdaeValIvfS~~Gkl~e 56 (244)
.+-|--+.||||.|+||.
T Consensus 7 agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CCccceEEEECCCceEEe
Confidence 355777899999999986
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=22.29 E-value=3.1e+02 Score=26.32 Aligned_cols=132 Identities=16% Similarity=0.151 Sum_probs=0.0
Q ss_pred eeecCCCCcccc--cCCCccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhc--CCCCCCC
Q 026043 46 IIFSSRGKLYEF--CSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFG--EDLGRLG 121 (244)
Q Consensus 46 IvfS~~Gkl~ef--~s~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~G--edL~~Ls 121 (244)
+|+-|.|....| ..+..-.++|++.-....-..-.. ...........++..+..+++.++.....+-. +++....
T Consensus 133 ~v~l~q~~f~~f~~~~~~er~~il~~l~~~~~~~~~~~-~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~ 211 (562)
T PHA02562 133 IVVLGTAGYVPFMQLSAPARRKLVEDLLDISVLSEMDK-LNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN 211 (562)
T ss_pred HheeccCchhhHhcCChHhHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
..++..++..++..+.....-+.++ +.++|..+......+.+.-..+...+......
T Consensus 212 ~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 212 GENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
No 191
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.24 E-value=3e+02 Score=19.66 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHhhH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGL----EELEQLERQLGSS 135 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~----~EL~~LE~qLe~s 135 (244)
+.+......|+.++...+...+.+-| -+.|+ .+|.+||.++...
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~k 71 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRKK 71 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHHH
Confidence 35666777888888887777666655 23344 3455555554443
No 192
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.17 E-value=5.1e+02 Score=27.68 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCC--C-----CCHHHHHHHHHHHhhHHHHHHHhhhhch---------HHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLG--R-----LGLEELEQLERQLGSSLGRVRSLKTRNQ---------LDKLSE 153 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~--~-----Ls~~EL~~LE~qLe~sL~~IR~rK~ql~---------~~~i~~ 153 (244)
.++.|+.+||..+...+..+--++.++=- . -..+.++++|.+|+..-+.|+.....++ .++...
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~ 487 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK 487 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 154 LQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 154 L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
++.+-..-..+-..+...+.+....
T Consensus 488 ~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 488 LKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 193
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=22.15 E-value=42 Score=26.38 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=31.3
Q ss_pred ecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCccccc
Q 026043 11 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFC 58 (244)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~ 58 (244)
|.++.....||-=.-+.|.++.-+|+-+ |++.|++.||-|-.-
T Consensus 41 v~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~ld 83 (124)
T PF14263_consen 41 VGGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFKLD 83 (124)
T ss_dssp ETTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEEEE
T ss_pred ecCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEEec
Confidence 5567777888888889999999999988 579999999987654
No 194
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=22.14 E-value=3.3e+02 Score=20.82 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+..+-...+. ..+.. -.+++.+++..++.+...|......|...+
T Consensus 56 G~sl~eI~~~l~~~~~--~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THCRE-MYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CCCHHHHHHHHhcccC--CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887654332 11111 123556666666666666666555555544
No 195
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=22.12 E-value=3.1e+02 Score=25.81 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.2
Q ss_pred HhhHHHHHHHhhhhchHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 026043 132 LGSSLGRVRSLKTRNQLDKLSELQR--KEEMLLEANNILSMKLEE 174 (244)
Q Consensus 132 Le~sL~~IR~rK~ql~~~~i~~L~~--ke~~L~eeN~~L~~kl~e 174 (244)
+.....+++.|=+.++....-.+|. ..+.++..|..|..+|..
T Consensus 221 ~~~~~~~L~qRv~Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~s 265 (386)
T COG3853 221 LTLFINRLEQRVYDLLLARMVALQTAPQIRLIQRNNQELIEKIQS 265 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHH
Confidence 3445566777777777666666665 467899999999999875
No 196
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=21.83 E-value=2.7e+02 Score=21.93 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+.++-..+...-.........++..++..+.++...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999888755432211000111123344445555555555555555555544
No 197
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=21.77 E-value=2.4e+02 Score=22.78 Aligned_cols=53 Identities=13% Similarity=-0.010 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMK 171 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~k 171 (244)
++|++|+..+-......-...-..-.+++.+++..+.++...|+..-..|...
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~ 119 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGC 119 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999988876643222110001122344455555555555555544444443
No 198
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.76 E-value=2.9e+02 Score=21.07 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|++|+.++-..-+.. .. ..-.+++.+++..++++...|+..-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 57 GFTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888765433221 11 11234555666666666666665555555544
No 199
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.49 E-value=2.6e+02 Score=20.48 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHh
Q 026043 119 RLGLEELEQLERQLG 133 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe 133 (244)
+++++++..+-...+
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 699999888866543
No 200
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=21.45 E-value=4.2e+02 Score=20.98 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 121 GLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 121 s~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
.+.|++.+-.-.|..+++..+.- +.-..+|..|+++-..+...|..|.++|
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~-~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAEL-RAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 36788888777777777655432 2334677889999888888888887753
No 201
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=21.14 E-value=1.4e+02 Score=24.80 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=36.0
Q ss_pred cceeeeee--cCCCCcccccCCC---------ccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHH
Q 026043 41 AEVALIIF--SSRGKLYEFCSSP---------SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQ 109 (244)
Q Consensus 41 aeValIvf--S~~Gkl~ef~s~~---------sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~ 109 (244)
+|.+||+. ||+||=|-.-... +..-++.||...... ......-..+...|+.++..+.+..
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~--------a~~~~~~~~~~r~lr~~it~~rR~i 167 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAAL--------AEAARAERRALRRLRRRITLLRRDI 167 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889998 8899877643221 245566666544221 1111233445556666666666665
Q ss_pred HHh
Q 026043 110 RQF 112 (244)
Q Consensus 110 r~l 112 (244)
+.+
T Consensus 168 ~~l 170 (177)
T PF03428_consen 168 RKL 170 (177)
T ss_pred HHH
Confidence 554
No 202
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=21.10 E-value=32 Score=33.54 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=0.0
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHH
Q 026043 86 KETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLD 149 (244)
Q Consensus 86 ~~~q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~ 149 (244)
.+.++|..|+..+...+.. .+ ....+.|.+|- .+|.+||+++..-...|..-|..+|..
T Consensus 470 ~El~~W~~e~~~~~~~l~~---e~-~~t~~~~~pl~-~~L~ele~~I~~~~~~i~~~ka~Il~N 528 (539)
T PF10243_consen 470 KELEMWRSEYRQHAEALQE---EQ-SITDEALEPLK-AQLAELEQQIKDQQDKICAVKANILKN 528 (539)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---HH-hhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456888888766554432 22 23344555553 489999999999999999999888754
No 203
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.04 E-value=65 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=14.4
Q ss_pred cceeeeeecCCCCcccccCC
Q 026043 41 AEVALIIFSSRGKLYEFCSS 60 (244)
Q Consensus 41 aeValIvfS~~Gkl~ef~s~ 60 (244)
..-.-..|||+||-..|+|.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEE
T ss_pred ccccCEEEecCCCEEEEEec
Confidence 34556789999998888864
No 204
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.88 E-value=2.4e+02 Score=17.94 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=24.9
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 145 RNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 145 ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
..+....+.|+..-..|..+|..|+.++....
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888889999999988887643
No 205
>PLN03128 DNA topoisomerase 2; Provisional
Probab=20.72 E-value=6.9e+02 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=21.7
Q ss_pred eeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 44 ALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 44 alIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
-+++|.+.|++..|. ++.+||+.|-.+
T Consensus 961 nm~l~d~~~~i~ky~---~~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYD---SPEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCC---CHHHHHHHHHHH
Confidence 567889999998886 578999888654
No 206
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.63 E-value=3.4e+02 Score=21.15 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++|++|+..+-......-. . ..-..++.++++++..+...|++.-..|...+..
T Consensus 57 GfsL~eI~~ll~~~~~~~~-~-~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i~~ 110 (131)
T cd04786 57 GFSLDEIRQLLPADASNWQ-H-DELLAALERKVADIEALEARLAQNKAQLLVLIDL 110 (131)
T ss_pred CCCHHHHHHHHhcccCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887653321100 0 1112356677777777777777777777666544
No 207
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.29 E-value=9.6e+02 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRK 157 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~k 157 (244)
++..+...|+.....+..+|..++.+.-.+.++-
T Consensus 545 e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~ 578 (782)
T PRK00409 545 EAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA 578 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666665554444444433
No 208
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=20.19 E-value=11 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.399 Sum_probs=27.0
Q ss_pred hhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 34 ELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 34 ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
||-|+. =|+||||+|+ ||.++.. ++-+.+..|++...
T Consensus 7 ElliI~--vI~lllFGp~-KLP~~~r--~lGk~ir~FK~~~~ 43 (84)
T PRK00191 7 EIGIIV--LLIIVLFGAK-KLPDAAR--SIGRSMRIFKSEVK 43 (84)
T ss_pred HHHHHH--HHHHHHhcch-HHHHHHH--HHHHHHHHHHHHHh
Confidence 444444 3688999998 9999873 68888888887543
No 209
>PRK09039 hypothetical protein; Validated
Probab=20.06 E-value=6.8e+02 Score=22.92 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHH-HHHHHH
Q 026043 92 YEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEA-NNILSM 170 (244)
Q Consensus 92 ~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~ee-N~~L~~ 170 (244)
+.++..|+.+|+.|+.. |..|+..|+.+=.+.++.+.++ +.|+.+...+..+ ...|..
T Consensus 136 ~~~V~~L~~qI~aLr~Q----------------la~le~~L~~ae~~~~~~~~~i-----~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 136 LAQVELLNQQIAALRRQ----------------LAALEAALDASEKRDRESQAKI-----ADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred hHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
No 210
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=20.03 E-value=56 Score=28.91 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=49.6
Q ss_pred hhhhhhhhhccc-CcceeeeeecCCCCcccccCCCccchhhhhhhhcccccccccccchhHhhhhHHHHH-HHHHHHHHH
Q 026043 28 LLKKAYELSVLC-DAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTLQANHQSAKETQASYEEYI-KLKEKHEAL 105 (244)
Q Consensus 28 L~KKA~ELSvLC-daeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~-kLk~kie~L 105 (244)
|+||.-|+|++- -.+.+-+-||...|+..| +|-.+.-..+..+. .++...+++..|+. +|-.++..+
T Consensus 1 ~lkr~~~~st~~~~~~l~sls~~t~s~~~iF----------DR~~KR~qrdrAa~-~~d~k~dylkeeig~rlaDrvfD~ 69 (325)
T KOG2940|consen 1 LLKRVPEKSTKQAHTFLASLSFSTESKVKIF----------DRDLKRIQRDRAAW-LSDQKNDYLKEEIGDRLADRVFDC 69 (325)
T ss_pred CccccchhhHHHHHHHHHHhhccchhhhHhh----------hhHHHHHHHhHHhh-cchhhhhHHHHHHHHHHHHHHHHH
Confidence 467777777764 334444445555444444 44333222222222 22222357777775 677777777
Q ss_pred HHH--------------HHHhhcCCCCC-----CCHHHHHHHHH
Q 026043 106 QHL--------------QRQFFGEDLGR-----LGLEELEQLER 130 (244)
Q Consensus 106 q~~--------------~r~l~GedL~~-----Ls~~EL~~LE~ 130 (244)
.+. .||+.||.++. .|.+-+++--.
T Consensus 70 kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 70 KKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc
Confidence 665 57888887664 35555555433
Done!