Query 026043
Match_columns 244
No_of_seqs 268 out of 1614
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 4.4E-40 1.5E-44 236.0 0.6 73 2-75 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.3E-39 7.7E-44 237.8 0.7 76 2-78 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.4E-38 8.3E-43 236.2 -0.9 74 1-75 16-89 (100)
4 1hbx_A SRF, serum response fac 100.0 1.9E-37 6.4E-42 228.5 -0.0 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 4.2E-37 1.4E-41 230.9 0.7 76 1-77 9-89 (103)
6 2jee_A YIIU; FTSZ, septum, coi 88.7 3.3 0.00011 29.0 8.3 46 120-170 3-48 (81)
7 2w6a_A ARF GTPase-activating p 87.5 4.1 0.00014 26.7 7.5 53 118-170 8-62 (63)
8 1j1d_C Troponin I, TNI; THIN f 78.8 13 0.00046 28.4 8.6 50 98-147 31-85 (133)
9 3hnw_A Uncharacterized protein 76.1 24 0.00082 27.0 10.9 69 90-172 65-133 (138)
10 2oqq_A Transcription factor HY 75.9 5.5 0.00019 24.2 4.5 27 147-173 15-41 (42)
11 1dip_A Delta-sleep-inducing pe 74.1 3.6 0.00012 28.2 3.7 25 146-170 19-43 (78)
12 3nmd_A CGMP dependent protein 69.8 23 0.0008 24.1 7.5 51 117-174 15-65 (72)
13 2dfs_A Myosin-5A; myosin-V, in 69.6 32 0.0011 35.1 11.2 85 90-176 957-1043(1080)
14 1dh3_A Transcription factor CR 69.4 12 0.00043 23.9 5.4 35 138-176 15-49 (55)
15 1t2k_D Cyclic-AMP-dependent tr 69.3 14 0.00049 23.9 5.9 38 137-178 14-51 (61)
16 3s9g_A Protein hexim1; cyclin 69.2 30 0.001 25.0 8.9 58 89-174 33-90 (104)
17 1ci6_A Transcription factor AT 68.9 14 0.00049 24.3 5.8 32 148-179 22-53 (63)
18 3hnw_A Uncharacterized protein 68.7 30 0.001 26.4 8.5 54 124-177 76-131 (138)
19 1jnm_A Proto-oncogene C-JUN; B 67.5 17 0.00058 23.7 6.0 40 137-180 14-53 (62)
20 2wt7_A Proto-oncogene protein 66.4 18 0.0006 23.7 5.9 37 138-178 16-52 (63)
21 2dgc_A Protein (GCN4); basic d 66.3 14 0.00047 24.5 5.3 37 136-176 21-57 (63)
22 1j1e_C Troponin I, TNI; THIN f 65.8 36 0.0012 27.3 8.6 50 98-147 31-85 (180)
23 2yy0_A C-MYC-binding protein; 65.6 9.8 0.00034 24.3 4.3 27 147-173 24-50 (53)
24 1gd2_E Transcription factor PA 62.9 16 0.00055 24.7 5.2 41 137-177 21-64 (70)
25 3oja_B Anopheles plasmodium-re 58.9 78 0.0027 29.2 11.1 22 153-174 555-576 (597)
26 1go4_E MAD1 (mitotic arrest de 58.3 30 0.001 25.1 6.3 22 153-174 72-93 (100)
27 3s9g_A Protein hexim1; cyclin 58.0 25 0.00086 25.4 5.7 59 116-175 26-84 (104)
28 1a93_B MAX protein, coiled coi 55.7 12 0.00042 21.7 3.0 26 141-166 6-31 (34)
29 3gp4_A Transcriptional regulat 55.3 56 0.0019 24.7 7.9 57 119-176 59-115 (142)
30 3na7_A HP0958; flagellar bioge 55.2 76 0.0026 26.4 9.4 36 121-156 88-125 (256)
31 1hjb_A Ccaat/enhancer binding 54.2 34 0.0012 24.1 5.9 28 152-179 39-66 (87)
32 2v71_A Nuclear distribution pr 53.7 87 0.003 25.3 12.5 25 150-174 89-113 (189)
33 2oxj_A Hybrid alpha/beta pepti 53.3 17 0.00059 20.9 3.3 26 150-175 2-27 (34)
34 1dip_A Delta-sleep-inducing pe 53.1 51 0.0018 22.5 6.5 31 143-173 6-39 (78)
35 1ytz_T Troponin T; muscle, THI 52.7 19 0.00065 26.5 4.5 31 116-146 38-68 (107)
36 2zqm_A Prefoldin beta subunit 52.7 61 0.0021 23.2 7.8 41 135-176 71-111 (117)
37 1gu4_A CAAT/enhancer binding p 51.1 46 0.0016 22.9 6.0 29 152-180 39-67 (78)
38 2w6b_A RHO guanine nucleotide 50.5 46 0.0016 21.3 5.4 33 146-178 7-39 (56)
39 3m48_A General control protein 47.6 20 0.00069 20.6 3.0 25 151-175 2-26 (33)
40 1g6u_A Domain swapped dimer; d 45.1 48 0.0016 19.8 5.7 23 118-140 15-37 (48)
41 3nrf_A APAG protein; structura 44.9 5.7 0.0002 29.2 0.5 43 11-58 21-63 (106)
42 2l16_A SEC-independent protein 44.3 0.9 3.1E-05 31.8 -3.7 31 43-76 16-46 (78)
43 1kd8_B GABH BLL, GCN4 acid bas 44.2 41 0.0014 19.6 4.0 24 151-174 3-26 (36)
44 3c3f_A Alpha/beta peptide with 44.1 42 0.0015 19.3 4.0 26 150-175 2-27 (34)
45 2jee_A YIIU; FTSZ, septum, coi 43.6 60 0.0021 22.6 5.6 32 143-174 14-45 (81)
46 1q08_A Zn(II)-responsive regul 42.9 72 0.0025 22.0 6.3 55 119-174 16-71 (99)
47 4gfh_A DNA topoisomerase 2; to 42.6 2.6E+02 0.009 28.8 12.5 43 26-73 958-1000(1177)
48 1gk7_A Vimentin; intermediate 42.1 43 0.0015 19.9 4.1 27 147-173 11-37 (39)
49 2xus_A Breast cancer metastasi 41.0 56 0.0019 20.5 4.6 33 122-161 12-44 (49)
50 3gpv_A Transcriptional regulat 40.7 1E+02 0.0034 23.3 7.3 56 119-175 73-128 (148)
51 2aze_A Transcription factor DP 40.4 1.1E+02 0.0036 24.0 7.2 48 120-169 2-49 (155)
52 1m2d_A [2Fe-2S] ferredoxin; th 39.0 11 0.00039 27.2 1.4 33 39-72 59-91 (110)
53 1deb_A APC protein, adenomatou 38.6 56 0.0019 20.6 4.3 25 152-176 6-30 (54)
54 1p9i_A Cortexillin I/GCN4 hybr 37.8 38 0.0013 18.5 3.0 19 158-176 8-26 (31)
55 3na7_A HP0958; flagellar bioge 36.8 1.8E+02 0.0061 24.0 9.7 20 124-143 105-124 (256)
56 1ci6_A Transcription factor AT 36.7 67 0.0023 20.9 4.8 28 147-174 35-62 (63)
57 1go4_E MAD1 (mitotic arrest de 36.6 65 0.0022 23.3 5.1 30 149-178 12-41 (100)
58 2rpa_A Katanin P60 ATPase-cont 36.2 7.1 0.00024 27.1 -0.1 35 29-75 16-50 (78)
59 2bni_A General control protein 36.0 61 0.0021 18.6 3.8 25 151-175 3-27 (34)
60 2oqq_A Transcription factor HY 35.4 74 0.0025 19.2 4.7 29 151-179 5-33 (42)
61 2l5g_B Putative uncharacterize 34.2 78 0.0027 19.1 5.1 38 120-165 2-39 (42)
62 1am9_A Srebp-1A, protein (ster 34.1 73 0.0025 21.8 5.0 27 150-176 51-77 (82)
63 3hvz_A Uncharacterized protein 33.8 18 0.00063 24.8 1.7 26 44-69 7-32 (78)
64 3m9b_A Proteasome-associated A 32.2 63 0.0022 27.3 5.1 27 143-169 69-95 (251)
65 3q4f_C DNA repair protein XRCC 32.0 49 0.0017 26.6 4.1 24 148-171 160-183 (186)
66 1t2k_D Cyclic-AMP-dependent tr 31.0 81 0.0028 20.2 4.5 27 146-172 33-59 (61)
67 1kaf_A Transcription regulator 30.1 14 0.00047 27.2 0.6 53 6-74 23-76 (108)
68 1nkp_B MAX protein, MYC proto- 29.1 1.3E+02 0.0043 20.4 5.5 21 152-172 57-77 (83)
69 2l5g_A GPS2 protein, G protein 28.5 81 0.0028 18.5 3.6 21 149-169 15-35 (38)
70 1m1j_C Fibrinogen gamma chain; 28.5 1.3E+02 0.0044 27.2 6.8 59 50-115 11-70 (409)
71 1kd8_A GABH AIV, GCN4 acid bas 28.3 81 0.0028 18.3 3.5 23 152-174 4-26 (36)
72 3w03_C DNA repair protein XRCC 27.9 96 0.0033 24.9 5.3 31 146-176 149-179 (184)
73 1j1d_B Troponin T, TNT; THIN f 27.3 1.8E+02 0.0061 21.1 8.1 32 116-147 38-69 (106)
74 3twe_A Alpha4H; unknown functi 26.7 78 0.0027 16.7 3.8 21 90-110 5-25 (27)
75 1fxk_A Prefoldin; archaeal pro 26.5 1.6E+02 0.0056 20.4 7.5 25 149-173 79-103 (107)
76 2k48_A Nucleoprotein; viral pr 26.3 1.9E+02 0.0064 21.0 6.2 22 124-145 43-64 (107)
77 1uo4_A General control protein 25.9 1E+02 0.0034 17.7 3.8 25 151-175 3-27 (34)
78 3ghg_A Fibrinogen alpha chain; 25.1 2E+02 0.0067 27.0 7.4 17 91-107 62-78 (562)
79 3c3g_A Alpha/beta peptide with 25.1 1E+02 0.0035 17.6 4.6 25 151-175 2-26 (33)
80 3oja_A Leucine-rich immune mol 24.5 3.8E+02 0.013 23.9 12.6 40 133-176 423-462 (487)
81 3oja_B Anopheles plasmodium-re 24.0 4.1E+02 0.014 24.2 13.6 35 140-174 521-555 (597)
82 2zvv_Y Cyclin-dependent kinase 24.0 21 0.00072 19.0 0.4 12 15-26 15-26 (26)
83 2v66_B Nuclear distribution pr 23.9 2.2E+02 0.0074 20.9 11.0 32 146-177 74-105 (111)
84 2hy6_A General control protein 23.8 1.1E+02 0.0038 17.5 3.8 25 151-175 3-27 (34)
85 1i84_S Smooth muscle myosin he 23.0 5.2E+02 0.018 26.4 10.9 13 93-105 864-876 (1184)
86 1e52_A Excinuclease ABC subuni 22.8 92 0.0032 20.4 3.6 42 116-157 13-58 (63)
87 1zps_A PRA-CH, phosphoribosyl- 22.7 20 0.0007 27.5 0.3 37 17-53 55-100 (138)
88 2v66_B Nuclear distribution pr 22.7 2.3E+02 0.0078 20.7 8.7 17 91-107 8-24 (111)
89 1nlw_A MAD protein, MAX dimeri 22.3 1.9E+02 0.0064 19.6 5.5 25 150-174 48-72 (80)
90 2lw9_A Unconventionnal myosin- 22.3 1.3E+02 0.0043 18.8 3.8 35 93-128 6-40 (51)
91 2v71_A Nuclear distribution pr 22.1 3.1E+02 0.01 22.0 11.1 35 142-176 123-157 (189)
92 2p22_C Protein SRN2; endosome, 21.7 2.6E+02 0.0087 22.4 6.8 24 149-172 86-109 (192)
93 3h4p_A Proteasome subunit alph 21.6 22 0.00074 30.0 0.3 19 40-58 11-31 (264)
94 3thf_A Protein shroom; coiled- 21.6 1.4E+02 0.0047 24.1 5.0 36 137-176 11-46 (190)
95 2zxx_A Geminin; coiled-coil, c 21.6 1.1E+02 0.0036 21.2 3.8 28 147-174 39-66 (79)
96 3qh9_A Liprin-beta-2; coiled-c 21.2 2.1E+02 0.0072 19.7 9.4 22 87-108 20-41 (81)
97 3mq7_A Bone marrow stromal ant 21.2 2.6E+02 0.0087 20.7 7.5 15 158-172 73-87 (121)
98 1nkp_A C-MYC, MYC proto-oncoge 21.2 2.1E+02 0.0072 19.7 5.7 17 158-174 68-84 (88)
99 3vkg_A Dynein heavy chain, cyt 20.8 4.7E+02 0.016 30.2 10.6 50 123-172 2014-2065(3245)
100 2jo8_A Serine/threonine-protei 20.3 1E+02 0.0035 19.4 3.2 17 117-133 7-23 (51)
101 3nzj_F Proteasome component C1 20.1 22 0.00076 30.5 0.0 20 37-56 4-23 (288)
102 1ryp_D 20S proteasome; multica 20.1 24 0.00082 29.0 0.2 17 42-58 3-21 (241)
103 3a7p_A Autophagy protein 16; c 20.0 3.1E+02 0.011 21.2 11.8 49 124-172 83-133 (152)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=4.4e-40 Score=235.95 Aligned_cols=73 Identities=56% Similarity=0.904 Sum_probs=69.4
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|++||+||++++.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999975 89999999998764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.3e-39 Score=237.85 Aligned_cols=76 Identities=54% Similarity=0.848 Sum_probs=72.5
Q ss_pred CccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcccccc
Q 026043 2 GRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYGTL 78 (244)
Q Consensus 2 gR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~~~ 78 (244)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|+ +|.+||+||++++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~-~~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC-CHHHHHHHHHhcCcccc
Confidence 89999999999999999999999999999999999999999999999999999999984 89999999999876544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.4e-38 Score=236.20 Aligned_cols=74 Identities=41% Similarity=0.660 Sum_probs=70.6
Q ss_pred CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+|+ +|..||+||.....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~~l 89 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRNL 89 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCCcH
Confidence 899999999999999999999999999999999999999999999999999999999986 89999999976543
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.9e-37 Score=228.53 Aligned_cols=70 Identities=37% Similarity=0.672 Sum_probs=67.7
Q ss_pred CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhh
Q 026043 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYE 71 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~ 71 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~-~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG-GGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC-CHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999975 8999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4.2e-37 Score=230.91 Aligned_cols=76 Identities=34% Similarity=0.632 Sum_probs=70.6
Q ss_pred CCccccceeeecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhh-----hhhccc
Q 026043 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEK-----YERCSY 75 (244)
Q Consensus 1 MgR~Ki~ik~Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeR-----Y~~~~~ 75 (244)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++|++|+|+|+ +|..+|++ |..++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~-~~~~vi~~~~Gk~l~~~c~ 87 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGKALIQTCL 87 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG-GGGGGTSSHHHHHHHHHTT
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc-cHHHHHHhhhhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999975 89999998 555554
Q ss_pred cc
Q 026043 76 GT 77 (244)
Q Consensus 76 ~~ 77 (244)
..
T Consensus 88 ~~ 89 (103)
T 1k6o_B 88 NS 89 (103)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=88.68 E-value=3.3 Score=29.04 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
+|++=|.+||..++.++..|- ++.-+|++|+.|-..|.++|..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788889999999999998875 5666778888877776666666444
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=87.49 E-value=4.1 Score=26.71 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHH--hhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 118 GRLGLEELEQLERQLGSSLGRVRS--LKTRNQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 118 ~~Ls~~EL~~LE~qLe~sL~~IR~--rK~ql~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
++.++.|..++-..|-.+=.+|.. +-+.-+.+++.-||++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 456777777777777666555542 23445678888899999999999998874
No 8
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=78.85 E-value=13 Score=28.41 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhch
Q 026043 98 LKEKHEALQHLQRQFFGE-----DLGRLGLEELEQLERQLGSSLGRVRSLKTRNQ 147 (244)
Q Consensus 98 Lk~kie~Lq~~~r~l~Ge-----dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~ 147 (244)
|+++-+......+.++.| +|+++|.++|+++=..|-..+..+-+-|..+-
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 444444444444445543 78999999999999999999998888876553
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.14 E-value=24 Score=27.02 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
+...|+.+++.+++.|+.....+ -+|+..|-..|...--++.. ...+++.|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666544433 33444444444333322222 22334455555555555555554
Q ss_pred HHH
Q 026043 170 MKL 172 (244)
Q Consensus 170 ~kl 172 (244)
..+
T Consensus 131 ~~~ 133 (138)
T 3hnw_A 131 TEL 133 (138)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.87 E-value=5.5 Score=24.22 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+.....+|..+...|+.||..||+.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344567788888888999999988663
No 11
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.15 E-value=3.6 Score=28.24 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSM 170 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~ 170 (244)
++.++|.+|..|...|+.||..|+.
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.80 E-value=23 Score=24.11 Aligned_cols=51 Identities=20% Similarity=0.262 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 117 LGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+++++. +.+|+..|......||.+.. .|.+|.+......++...|+.++..
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 88888889999998887753 3566777666777777788887765
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.56 E-value=32 Score=35.12 Aligned_cols=85 Identities=21% Similarity=0.220 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQRQFFG--EDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNI 167 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r~l~G--edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~ 167 (244)
.+..|+.+|++.++.|+.......- ..+..| -+|+..|+.+++...+.-...+.. ..+..++|+.|...|.++|..
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L-~~e~~~l~~~~~~~~ke~~~lee~-~~~~~~~L~~kv~~L~~e~~~ 1034 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKNATNRVLSL-QEEIAKLRKELHQTQTEKKTIEEW-ADKYKHETEQLVSELKEQNTL 1034 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777766666554222110 000000 124444445444444433332222 222235788888899999999
Q ss_pred HHHHHHHHH
Q 026043 168 LSMKLEEIN 176 (244)
Q Consensus 168 L~~kl~e~~ 176 (244)
|+.++.+.+
T Consensus 1035 L~qq~~~l~ 1043 (1080)
T 2dfs_A 1035 LKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887765
No 14
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=69.42 E-value=12 Score=23.93 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=27.2
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 138 RVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 138 ~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
.-|.||. ..+++|..+...|..+|..|..++....
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565 3458888999999999999999987754
No 15
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=69.31 E-value=14 Score=23.94 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 137 GRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 137 ~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
.+-|.||.+ .+..|..+...|..+|..|..++.....+
T Consensus 14 ~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 14 SRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666654 45889999999999999999998876544
No 16
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.19 E-value=30 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 026043 89 QASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168 (244)
Q Consensus 89 q~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L 168 (244)
+.+-+||..|.++++.++..++.+ +++.... -.+|.+|..+...|..+|..|
T Consensus 33 qELIqEYl~LE~~~s~le~e~~rl-------------r~~~~~~---------------~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 33 QELIKEYLELEKSLSRMEDENNRL-------------RLESKRL---------------DARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc---------------hhhHHHHHHHHHHHHHHHHHH
Confidence 478889999999999887776543 1111111 455677778888888888888
Q ss_pred HHHHHH
Q 026043 169 SMKLEE 174 (244)
Q Consensus 169 ~~kl~e 174 (244)
+..-+.
T Consensus 85 ~~e~~~ 90 (104)
T 3s9g_A 85 LTENEL 90 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 775443
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.89 E-value=14 Score=24.29 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026043 148 LDKLSELQRKEEMLLEANNILSMKLEEINAAR 179 (244)
Q Consensus 148 ~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~~ 179 (244)
.+.+..|..+...|..+|..|..++.....+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888889999999999999988766543
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=68.66 E-value=30 Score=26.43 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQL--DKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~~--~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
+...|+.+++.--+.+-+-|.++.. ..++.+++....|++++..|..++...+.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777766677777777644 44555666677777788887777766554
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.52 E-value=17 Score=23.70 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026043 137 GRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAARR 180 (244)
Q Consensus 137 ~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~~~ 180 (244)
.+-|.||.+ .+.+|..+...|..+|..|..++.....+..
T Consensus 14 ~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 14 SKSRKRKLE----RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566644 4589999999999999999999988765543
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.43 E-value=18 Score=23.75 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 138 RVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 138 ~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
+-|.||. +.+.+|+.+...|..+|..|...+.....+
T Consensus 16 rcR~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 16 KCRNRRR----ELTDTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355664 445889999999999999999998775543
No 21
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.31 E-value=14 Score=24.45 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=28.2
Q ss_pred HHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 136 LGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 136 L~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
-.+.|.||. +.+.+|..+...|..+|..|...+....
T Consensus 21 ArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 21 ARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566664 4568899999999999999999887644
No 22
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=65.81 E-value=36 Score=27.33 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhcC-----CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhch
Q 026043 98 LKEKHEALQHLQRQFFGE-----DLGRLGLEELEQLERQLGSSLGRVRSLKTRNQ 147 (244)
Q Consensus 98 Lk~kie~Lq~~~r~l~Ge-----dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~ 147 (244)
|+++-+......+.++.| +|++||.++|+++=.+|-..+..+-+-|..+-
T Consensus 31 L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444444443 78899999999999999999999888887653
No 23
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=65.61 E-value=9.8 Score=24.33 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
|..++++||.|...|.+++..|+.++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888887764
No 24
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=62.88 E-value=16 Score=24.73 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=23.6
Q ss_pred HHHHHhhhhch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 137 GRVRSLKTRNQ---LDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 137 ~~IR~rK~ql~---~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
...|.||.+-+ ..++.+|...-..|..+|..|+..+.....
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665533 334455555555566777777777665543
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.86 E-value=78 Score=29.19 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026043 153 ELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 153 ~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..+++...+.+++..++.++.+
T Consensus 555 ~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 555 NKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555444444
No 26
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.34 E-value=30 Score=25.08 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026043 153 ELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 153 ~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..++....|+.|+..|+.++..
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677777777776643
No 27
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=58.03 E-value=25 Score=25.41 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 116 DLGRLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 116 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
.|.+||-.||.+==-+|+..+.++-..-+.+-.. -...-.+.+.|..+-..|+..-...
T Consensus 26 rL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 26 SLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE-SKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHH
Confidence 4556887777664444444444442221111111 1222356677777777777654443
No 28
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=55.71 E-value=12 Score=21.68 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=16.3
Q ss_pred HhhhhchHHHHHHHHHHHHHHHHHHH
Q 026043 141 SLKTRNQLDKLSELQRKEEMLLEANN 166 (244)
Q Consensus 141 ~rK~ql~~~~i~~L~~ke~~L~eeN~ 166 (244)
.||++-....|++|+++-..|.++-.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 35677777777777766555555433
No 29
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=55.33 E-value=56 Score=24.69 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
++|++|+..+-...+.+-..+.. ..+++.+++..+..+...|+..-..|..++....
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998887665443222222 2356778888888888888888888888776544
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.18 E-value=76 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHH
Q 026043 121 GLEELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQR 156 (244)
Q Consensus 121 s~~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ 156 (244)
+.+|+..|...++..-.++...-.++ ++++++.++.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887766666555543 3344444443
No 31
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=54.24 E-value=34 Score=24.09 Aligned_cols=28 Identities=29% Similarity=0.228 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026043 152 SELQRKEEMLLEANNILSMKLEEINAAR 179 (244)
Q Consensus 152 ~~L~~ke~~L~eeN~~L~~kl~e~~~~~ 179 (244)
.+++.+...|..+|..|+.+|.+...+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778889999999999988766553
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.66 E-value=87 Score=25.26 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++..|++....|.+.+..|...|-+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ire 113 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRE 113 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555666555555543
No 33
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=53.34 E-value=17 Score=20.95 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
.+++|..|+..|..+|..|...+...
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 35677788888888888888776553
No 34
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=53.06 E-value=51 Score=22.48 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=25.1
Q ss_pred hhhchH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 143 KTRNQL---DKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 143 K~ql~~---~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
|+++|. ++++-||.+...|.+.|..|...-.
T Consensus 6 KtHLm~AVREEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 6 KNHLMYAVREEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp TTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455543 7889999999999999999988643
No 35
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=52.74 E-value=19 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhc
Q 026043 116 DLGRLGLEELEQLERQLGSSLGRVRSLKTRN 146 (244)
Q Consensus 116 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql 146 (244)
+|++||.++|+++=.+|-..+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999999888888877655
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=52.70 E-value=61 Score=23.20 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 135 SLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 135 sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
++..+..++.. +...|+.|.++...+..+-..|+.++.+..
T Consensus 71 a~~~L~~~~e~-ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 71 AVAELKEKIET-LEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444432 266778888888888888888887776644
No 37
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.06 E-value=46 Score=22.91 Aligned_cols=29 Identities=28% Similarity=0.218 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026043 152 SELQRKEEMLLEANNILSMKLEEINAARR 180 (244)
Q Consensus 152 ~~L~~ke~~L~eeN~~L~~kl~e~~~~~~ 180 (244)
.+++.+...|..+|..|+.+|.....+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999988766543
No 38
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=50.51 E-value=46 Score=21.33 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
.+.+.+-.|+.....|+.+|+.|.+-+++.+++
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkA 39 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888999999999988876544
No 39
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=47.55 E-value=20 Score=20.58 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+.+|..|+..|..+|..|...+...
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567778888888888888877654
No 40
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.14 E-value=48 Score=19.84 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHH
Q 026043 118 GRLGLEELEQLERQLGSSLGRVR 140 (244)
Q Consensus 118 ~~Ls~~EL~~LE~qLe~sL~~IR 140 (244)
+++|.+||..||..|..--+++-
T Consensus 15 egfspeelaaleselqalekkla 37 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 37899999999988765444433
No 41
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=44.88 E-value=5.7 Score=29.20 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=34.9
Q ss_pred ecCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCccccc
Q 026043 11 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFC 58 (244)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~ 58 (244)
|.++.-...||-=.-..|.+|.-+||.+| ++.|+++||-|-.-
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ld 63 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLD 63 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEec
Confidence 45666677788888899999999999665 89999999877664
No 42
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=44.31 E-value=0.9 Score=31.76 Aligned_cols=31 Identities=32% Similarity=0.479 Sum_probs=24.6
Q ss_pred eeeeeecCCCCcccccCCCccchhhhhhhhcccc
Q 026043 43 VALIIFSSRGKLYEFCSSPSMHKTLEKYERCSYG 76 (244)
Q Consensus 43 ValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~~ 76 (244)
||||||+| +||++.. .++-+.+..|++....
T Consensus 16 VaLlvfGp-kkLP~l~--r~lGk~ir~fK~~~~~ 46 (78)
T 2l16_A 16 IALIIFGP-SKLPEIG--RAAGRTLLEFKSATKS 46 (78)
T ss_dssp HHHHHSCT-TTHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHH--HHHHHHHHHHHHHHHH
Confidence 78999998 4899887 3688888888876543
No 43
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.23 E-value=41 Score=19.61 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+.+|..|+..|...|..|..++..
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~R 26 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHH
Confidence 455566666666666666655543
No 44
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.12 E-value=42 Score=19.26 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
.+++|..|...|..+|..|...+...
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35667777778888888887776553
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.55 E-value=60 Score=22.55 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=24.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 143 KTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 143 K~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
|.+-..+.|.-||-....|.++|..|.....+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777887778888888888877766
No 46
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=42.92 E-value=72 Score=21.97 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHhhHHH-HHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLG-RVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~-~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
++|++|+..+-...+..-. .+ ..-.+++.+++..+.++...|+..-..|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999998654432110 11 1123466667777777776676666666665543
No 47
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=42.56 E-value=2.6e+02 Score=28.80 Aligned_cols=43 Identities=16% Similarity=0.367 Sum_probs=29.0
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhc
Q 026043 26 NGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERC 73 (244)
Q Consensus 26 ~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~ 73 (244)
++|+|+- .|..-.++ .-+++|.++|++..|. ++++||+-|-.+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~---~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYN---SVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECS---SHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcC---CHHHHHHHHHHH
Confidence 4555553 24333222 2578899999999996 589999988654
No 48
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=42.09 E-value=43 Score=19.86 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
+.+.+...=.|++.|..+|..|..++.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556778899999999988764
No 49
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=41.00 E-value=56 Score=20.48 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHH
Q 026043 122 LEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEML 161 (244)
Q Consensus 122 ~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L 161 (244)
+++|..||.+. -.-|.|++.+.|..++++...|
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34666676443 3446778888888777775544
No 50
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.73 E-value=1e+02 Score=23.34 Aligned_cols=56 Identities=4% Similarity=-0.015 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 119 RLGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 119 ~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
++|++|+..+-...+..-..+.. ..+++.+++..+.++...|+..-..|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998887654332222222 234677777788888777877777777776553
No 51
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=40.41 E-value=1.1e+02 Score=23.98 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
-|..|.+.||..-...+.+|+.++.+| .++...+.=-+.|.+-|+.+.
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999998888888888777554 222222222345666665554
No 52
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=39.01 E-value=11 Score=27.25 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=25.3
Q ss_pred cCcceeeeeecCCCCcccccCCCccchhhhhhhh
Q 026043 39 CDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYER 72 (244)
Q Consensus 39 CdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~ 72 (244)
|+..-.|+|+ |+|.+|..-++.++.+||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5555556666 88988888877789999998753
No 53
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.56 E-value=56 Score=20.60 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 152 SELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 152 ~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
++|-+.+..|..||..|++.+.+..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 4555667778888888888887644
No 54
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=37.79 E-value=38 Score=18.51 Aligned_cols=19 Identities=32% Similarity=0.267 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026043 158 EEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 158 e~~L~eeN~~L~~kl~e~~ 176 (244)
-..|..+|++|+.++++.-
T Consensus 8 lasleaenkqlkakveell 26 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4568889999999988754
No 55
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.78 E-value=1.8e+02 Score=24.02 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhHHHHHHHhh
Q 026043 124 ELEQLERQLGSSLGRVRSLK 143 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK 143 (244)
++..||..+...+..+-..+
T Consensus 105 ~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 56
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.69 E-value=67 Score=20.91 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+..+..+|+.+...|..|+..|+.-|.+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455666666677777777665543
No 57
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.57 E-value=65 Score=23.29 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 149 DKLSELQRKEEMLLEANNILSMKLEEINAA 178 (244)
Q Consensus 149 ~~i~~L~~ke~~L~eeN~~L~~kl~e~~~~ 178 (244)
+++..|+++...|..+|..|++.+...+..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999998876644
No 58
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=36.19 E-value=7.1 Score=27.11 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.7
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhccc
Q 026043 29 LKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCSY 75 (244)
Q Consensus 29 ~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~~ 75 (244)
+|+|+|.+.+++=|.|++.|. ++-.-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------g~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------GVLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHH------------HHHHHHHHHHHhcC
Confidence 689999999999888877653 46777888877654
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=36.01 E-value=61 Score=18.64 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+++|..|...|..+|..|...+...
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHH
Confidence 4566667777777777777766543
No 60
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.45 E-value=74 Score=19.21 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEINAAR 179 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~~~~~ 179 (244)
+.+|..+.+.|+.-|..|..++.-.+.++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45677788888888888888876655543
No 61
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.23 E-value=78 Score=19.13 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Q 026043 120 LGLEELEQLERQLGSSLGRVRSLKTRNQLDKLSELQRKEEMLLEAN 165 (244)
Q Consensus 120 Ls~~EL~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN 165 (244)
+|-+||-|==..++.-+.+++ ++|.+||+|.+.|.+..
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEEEA 39 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Confidence 344455554444555444444 45688888888777653
No 62
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=34.11 E-value=73 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
-|..|+.....|.+++..|+..+.+..
T Consensus 51 YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 51 YIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677888889999999999887643
No 63
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=33.80 E-value=18 Score=24.80 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=21.0
Q ss_pred eeeeecCCCCcccccCCCccchhhhh
Q 026043 44 ALIIFSSRGKLYEFCSSPSMHKTLEK 69 (244)
Q Consensus 44 alIvfS~~Gkl~ef~s~~sm~~iLeR 69 (244)
-+.||.|+|.+++++..+.+.++...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36899999999999988777776644
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.20 E-value=63 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=13.6
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHH
Q 026043 143 KTRNQLDKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 143 K~ql~~~~i~~L~~ke~~L~eeN~~L~ 169 (244)
|++.+.+.+..++++...|.+|+..|+
T Consensus 69 rNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 69 RNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555555554443
No 65
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.95 E-value=49 Score=26.58 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 148 LDKLSELQRKEEMLLEANNILSMK 171 (244)
Q Consensus 148 ~~~i~~L~~ke~~L~eeN~~L~~k 171 (244)
.++|.+|+.+-..|++||..|...
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678889999999999998764
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.02 E-value=81 Score=20.18 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
.+..+...|+.....|.+++..|+..+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777778888888877654
No 67
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=30.11 E-value=14 Score=27.19 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=36.1
Q ss_pred cceeee-cCCCCcceeccccccchhhhhhhhhcccCcceeeeeecCCCCcccccCCCccchhhhhhhhcc
Q 026043 6 VELKRI-ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSSPSMHKTLEKYERCS 74 (244)
Q Consensus 6 i~ik~I-en~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~Gkl~ef~s~~sm~~iLeRY~~~~ 74 (244)
+++|-+ +|.+|=.|+|.||-.|+-+ +=...+|..--|+-. -.+++++.|....
T Consensus 23 ie~K~~~~~RSN~~i~f~KRt~GiRq---------------fEi~n~G~fRI~gYk-~se~~~~~f~slG 76 (108)
T 1kaf_A 23 FVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYK-MMEHHIQKFTDIG 76 (108)
T ss_dssp CCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEES-CCHHHHHHHHTTT
T ss_pred ceeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEec-CCHHHHHHHHhcC
Confidence 677776 7889999999999999621 112467765555432 3577777776554
No 68
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=29.06 E-value=1.3e+02 Score=20.37 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026043 152 SELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 152 ~~L~~ke~~L~eeN~~L~~kl 172 (244)
..|+.....|..+|..|..++
T Consensus 57 ~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 57 HTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555444
No 69
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.47 E-value=81 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026043 149 DKLSELQRKEEMLLEANNILS 169 (244)
Q Consensus 149 ~~i~~L~~ke~~L~eeN~~L~ 169 (244)
++|..|+.|...|+++.-+|-
T Consensus 15 eQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766553
No 70
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.45 E-value=1.3e+02 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=31.8
Q ss_pred CCCCcccccCCC-ccchhhhhhhhcccccccccccchhHhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 026043 50 SRGKLYEFCSSP-SMHKTLEKYERCSYGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGE 115 (244)
Q Consensus 50 ~~Gkl~ef~s~~-sm~~iLeRY~~~~~~~~~~~~~~~~~~q~~~~E~~kLk~kie~Lq~~~r~l~Ge 115 (244)
++.++=.||-.. .+.++|.+|++..... ..+.+..-.++..+...+..|-+.+.....+
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~-------l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGE-------LLEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444455332 4999999998743211 1223344556666666666555555444443
No 71
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=28.26 E-value=81 Score=18.33 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026043 152 SELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 152 ~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
.+|..|+..|..+|..|...+..
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555555555555443
No 72
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.95 E-value=96 Score=24.89 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
-+++.+..|+.+...|+++|..|+....+..
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l 179 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQ 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999999988766543
No 73
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.32 E-value=1.8e+02 Score=21.10 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHHHHHhhhhch
Q 026043 116 DLGRLGLEELEQLERQLGSSLGRVRSLKTRNQ 147 (244)
Q Consensus 116 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql~ 147 (244)
+|++||.++|+++=.+|-..+..+-+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 78999999999999999999998888886653
No 74
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.70 E-value=78 Score=16.72 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 026043 90 ASYEEYIKLKEKHEALQHLQR 110 (244)
Q Consensus 90 ~~~~E~~kLk~kie~Lq~~~r 110 (244)
.++.|+..|++++.+|++..|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445555556665555555443
No 75
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.50 E-value=1.6e+02 Score=20.41 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 149 DKLSELQRKEEMLLEANNILSMKLE 173 (244)
Q Consensus 149 ~~i~~L~~ke~~L~eeN~~L~~kl~ 173 (244)
..|+.|.++...+..+-..|+.++.
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777776666666554
No 76
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.31 E-value=1.9e+02 Score=21.02 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhHHHHHHHhhhh
Q 026043 124 ELEQLERQLGSSLGRVRSLKTR 145 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~q 145 (244)
|+...|.||..|-.+++....+
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~ 64 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666665555554433
No 77
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=25.94 E-value=1e+02 Score=17.74 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+.+|..|...|..+|..|...+...
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567777778888888887776553
No 78
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.11 E-value=2e+02 Score=27.00 Aligned_cols=17 Identities=24% Similarity=0.042 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026043 91 SYEEYIKLKEKHEALQH 107 (244)
Q Consensus 91 ~~~E~~kLk~kie~Lq~ 107 (244)
+...|.+|+.+++.+++
T Consensus 62 ltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445555555555544
No 79
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=25.09 E-value=1e+02 Score=17.56 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+++|..|...|..+|..|...+...
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556667777777777777766543
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.47 E-value=3.8e+02 Score=23.86 Aligned_cols=40 Identities=23% Similarity=0.090 Sum_probs=23.8
Q ss_pred hhHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 133 GSSLGRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 133 e~sL~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
+..+...|.+.. ...+..+..+..|.++|..+++.+.+..
T Consensus 423 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 423 YVEQQSVQNNAI----RDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcch----hhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 334444444433 3345566667777777777777776644
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.01 E-value=4.1e+02 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 140 RSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 140 R~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
..++.+...+++++.++.-+.++++...|++++++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhh
Confidence 34445555555555555555555666666655543
No 82
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=24.01 E-value=21 Score=19.04 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=8.5
Q ss_pred CCcceecccccc
Q 026043 15 INRQVTFAKRRN 26 (244)
Q Consensus 15 ~~RqvTFsKRr~ 26 (244)
+.|.+.|+||+.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467788888763
No 83
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.88 E-value=2.2e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 146 NQLDKLSELQRKEEMLLEANNILSMKLEEINA 177 (244)
Q Consensus 146 l~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~~ 177 (244)
....+++++..|-....|.|..|...|.+...
T Consensus 74 ~t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 74 ATIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888889989999999999999988653
No 84
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.82 E-value=1.1e+02 Score=17.52 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 151 LSELQRKEEMLLEANNILSMKLEEI 175 (244)
Q Consensus 151 i~~L~~ke~~L~eeN~~L~~kl~e~ 175 (244)
+.+|..|+..|..+|..|...+...
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566677777777777777766543
No 85
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.00 E-value=5.2e+02 Score=26.35 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 026043 93 EEYIKLKEKHEAL 105 (244)
Q Consensus 93 ~E~~kLk~kie~L 105 (244)
.++..++.+++.+
T Consensus 864 ~eL~el~~~L~~l 876 (1184)
T 1i84_S 864 EELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444333333
No 86
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=22.82 E-value=92 Score=20.42 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCCCCCHHH----HHHHHHHHhhHHHHHHHhhhhchHHHHHHHHHH
Q 026043 116 DLGRLGLEE----LEQLERQLGSSLGRVRSLKTRNQLDKLSELQRK 157 (244)
Q Consensus 116 dL~~Ls~~E----L~~LE~qLe~sL~~IR~rK~ql~~~~i~~L~~k 157 (244)
+...++.++ +..|+.++..+.....--+...+.++|..|++.
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 445555444 555666666666666666666677777766654
No 87
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=22.69 E-value=20 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=28.4
Q ss_pred cceeccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 026043 17 RQVTFAKRRNGL---------LKKAYELSVLCDAEVALIIFSSRGK 53 (244)
Q Consensus 17 RqvTFsKRr~GL---------~KKA~ELSvLCdaeValIvfS~~Gk 53 (244)
+-+-||+=|+.| +-+..|+.+-||.|.-|+..-+.|.
T Consensus 55 ~~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 55 TAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp BCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred cEEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 334457767755 4466899999999999999988884
No 88
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.65 E-value=2.3e+02 Score=20.73 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 026043 91 SYEEYIKLKEKHEALQH 107 (244)
Q Consensus 91 ~~~E~~kLk~kie~Lq~ 107 (244)
+......|..+++.+..
T Consensus 8 L~~~~~~L~~E~e~~k~ 24 (111)
T 2v66_B 8 LQADNQRLKYEVEALKE 24 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555544443
No 89
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.33 E-value=1.9e+02 Score=19.62 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 150 KLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 150 ~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
-|..|+.++..+.+++..|+.+..+
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~ 72 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRH 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666555544
No 90
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=22.28 E-value=1.3e+02 Score=18.82 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 026043 93 EEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQL 128 (244)
Q Consensus 93 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~L 128 (244)
.|+.+|..+|+.||+....-+ -.|..-|..+|+++
T Consensus 6 EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 478888899999887643211 12345566666655
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.12 E-value=3.1e+02 Score=21.98 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=27.1
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 142 LKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 142 rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
|+.......++++..|-....|.|..|...+.+..
T Consensus 123 r~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe 157 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLNQAIERNAFLESELDEKE 157 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667788888888888999999999888754
No 92
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.68 E-value=2.6e+02 Score=22.38 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 149 DKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 149 ~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
.+++.++.+...+.++-+.|....
T Consensus 86 ~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 86 EDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 93
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=21.65 E-value=22 Score=30.02 Aligned_cols=19 Identities=32% Similarity=0.777 Sum_probs=12.0
Q ss_pred CcceeeeeecCCCCccc--cc
Q 026043 40 DAEVALIIFSSRGKLYE--FC 58 (244)
Q Consensus 40 daeValIvfS~~Gkl~e--f~ 58 (244)
+-|-++-+|||.|+||. |+
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA 31 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYA 31 (264)
T ss_dssp -----CCCCCSSSSCHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhH
Confidence 34667889999999985 64
No 94
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.60 E-value=1.4e+02 Score=24.10 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=28.4
Q ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 137 GRVRSLKTRNQLDKLSELQRKEEMLLEANNILSMKLEEIN 176 (244)
Q Consensus 137 ~~IR~rK~ql~~~~i~~L~~ke~~L~eeN~~L~~kl~e~~ 176 (244)
..|..+|.+|+ +.|++|...|.++-..|...+....
T Consensus 11 ~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 11 NLIKQKMDELI----KHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp CHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778887775 7889999999999888888776544
No 95
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=21.56 E-value=1.1e+02 Score=21.19 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 147 QLDKLSELQRKEEMLLEANNILSMKLEE 174 (244)
Q Consensus 147 ~~~~i~~L~~ke~~L~eeN~~L~~kl~e 174 (244)
+..+|+.++.....|.++|..|..-..+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666777777777665544
No 96
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=21.20 E-value=2.1e+02 Score=19.74 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=16.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH
Q 026043 87 ETQASYEEYIKLKEKHEALQHL 108 (244)
Q Consensus 87 ~~q~~~~E~~kLk~kie~Lq~~ 108 (244)
+.+.+.+|+..|+-+++.++.+
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888898888888877654
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.18 E-value=2.6e+02 Score=20.73 Aligned_cols=15 Identities=33% Similarity=0.180 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 026043 158 EEMLLEANNILSMKL 172 (244)
Q Consensus 158 e~~L~eeN~~L~~kl 172 (244)
.+.|+.+...|..+|
T Consensus 73 vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 73 VEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 98
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.16 E-value=2.1e+02 Score=19.72 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026043 158 EEMLLEANNILSMKLEE 174 (244)
Q Consensus 158 e~~L~eeN~~L~~kl~e 174 (244)
...|..+|..|+.+|.+
T Consensus 68 ~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777777655
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.84 E-value=4.7e+02 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhc--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 123 EELEQLERQLGSSLGRVRSLKTRN--QLDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 123 ~EL~~LE~qLe~sL~~IR~rK~ql--~~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
++|..+|..|+.+..+....+.++ +.+.++.|+.+-..+..+...|+.++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999888888777665 55777777766544444444444443
No 100
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.25 E-value=1e+02 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=11.0
Q ss_pred CCCCCHHHHHHHHHHHh
Q 026043 117 LGRLGLEELEQLERQLG 133 (244)
Q Consensus 117 L~~Ls~~EL~~LE~qLe 133 (244)
|..+|++||++--..|+
T Consensus 7 Lk~ls~eEL~~rl~~Ld 23 (51)
T 2jo8_A 7 LKSWTVEDLQKRLLALD 23 (51)
T ss_dssp GGGSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHcc
Confidence 55678888887544333
No 101
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=20.12 E-value=22 Score=30.48 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=15.2
Q ss_pred cccCcceeeeeecCCCCccc
Q 026043 37 VLCDAEVALIIFSSRGKLYE 56 (244)
Q Consensus 37 vLCdaeValIvfS~~Gkl~e 56 (244)
+-.+-|-++-+|||.|+||.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 34455777889999999986
No 102
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=20.06 E-value=24 Score=29.02 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=13.3
Q ss_pred ceeeeeecCCCCccc--cc
Q 026043 42 EVALIIFSSRGKLYE--FC 58 (244)
Q Consensus 42 eValIvfS~~Gkl~e--f~ 58 (244)
|-++-+|||.|+||. |+
T Consensus 3 d~~~t~fsp~Grl~QvEya 21 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYA 21 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHH
T ss_pred CCCceeECCCCcchHHHHH
Confidence 446779999999986 64
No 103
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=20.04 E-value=3.1e+02 Score=21.21 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHHHHHHhhhhch--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026043 124 ELEQLERQLGSSLGRVRSLKTRNQ--LDKLSELQRKEEMLLEANNILSMKL 172 (244)
Q Consensus 124 EL~~LE~qLe~sL~~IR~rK~ql~--~~~i~~L~~ke~~L~eeN~~L~~kl 172 (244)
.+.+|+..|...-+.+-.-++++. .-+...+..|.+.|++||..|-..+
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 2344557778888999997765544
Done!