BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026044
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C1CM03|SEPF_STRZP Cell division protein SepF OS=Streptococcus pneumoniae (strain
P1031) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1CSS9|SEPF_STRZT Cell division protein SepF OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|P0CB77|SEPF_STRPN Cell division protein SepF OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=sepF PE=1 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B5E714|SEPF_STRP4 Cell division protein SepF OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q8DNW1|SEPF_STRR6 Cell division protein SepF OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B2IRR9|SEPF_STRPS Cell division protein SepF OS=Streptococcus pneumoniae (strain
CGSP14) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|B8ZM59|SEPF_STRPJ Cell division protein SepF OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1C8Q3|SEPF_STRP7 Cell division protein SepF OS=Streptococcus pneumoniae (strain
70585) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q04JA5|SEPF_STRP2 Cell division protein SepF OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|C1CFN5|SEPF_STRZJ Cell division protein SepF OS=Streptococcus pneumoniae (strain JJA)
GN=sepF PE=3 SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 139 VILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLG 197
+I F Y +V A R LD+ + A H+ A N K L P +V+ N + I L DED
Sbjct: 107 LIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQ 166
Query: 198 VE-NFDPRR 205
E FD +R
Sbjct: 167 GEFGFDMKR 175
>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
discoideum GN=psmD2 PE=1 SV=1
Length = 893
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 163 IAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLGVENFD 202
+ A+ TKWWF R L V++ + LWD D G+ D
Sbjct: 393 MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKID 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,706,971
Number of Sequences: 539616
Number of extensions: 3739619
Number of successful extensions: 7058
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 7057
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)