Query 026044
Match_columns 244
No_of_seqs 102 out of 119
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 04:20:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nrg_A Intrinsic membrane prot 31.8 41 0.0014 25.7 3.5 13 70-82 63-75 (82)
2 3sd4_A PHD finger protein 20; 27.9 34 0.0012 24.0 2.3 13 140-152 43-55 (69)
3 1vmb_A 30S ribosomal protein S 26.6 21 0.00073 28.8 1.1 43 176-218 11-56 (140)
4 4dix_A Plectin-related protein 25.7 48 0.0017 29.5 3.3 44 124-175 106-149 (230)
5 2eqm_A PHD finger protein 20-l 23.2 43 0.0015 25.0 2.2 24 139-162 49-73 (88)
6 2kjw_A TS9, 30S ribosomal prot 21.9 32 0.0011 26.2 1.3 60 148-219 19-81 (96)
7 2nsc_A Trigger factor, TF; cha 21.7 34 0.0011 25.8 1.3 21 203-225 72-92 (109)
8 1hgv_A PH75 inovirus major coa 21.1 20 0.00069 24.6 -0.0 10 170-179 36-45 (46)
9 3abi_A Putative uncharacterize 21.1 16 0.00056 31.8 -0.6 26 194-219 339-364 (365)
10 1wxm_A A-RAF proto-oncogene se 18.2 44 0.0015 25.6 1.3 25 173-197 38-68 (86)
No 1
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=31.83 E-value=41 Score=25.75 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=9.0
Q ss_pred cCCCCcCCCCCCc
Q 026044 70 FSSGRLKSLPRGI 82 (244)
Q Consensus 70 ~~p~g~e~LP~gI 82 (244)
..|..+.+|-.||
T Consensus 63 P~P~~~~~~~~~~ 75 (82)
T 2nrg_A 63 PAPNITGALETGI 75 (82)
T ss_dssp SSSSSCSSSSSSC
T ss_pred CCCccchhHHHHH
Confidence 3477777777776
No 2
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=27.88 E-value=34 Score=24.01 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=9.7
Q ss_pred EEEEecCcccccc
Q 026044 140 ILFHYDGDVNAWR 152 (244)
Q Consensus 140 mLFHYDG~vd~W~ 152 (244)
+|.||||--+.|+
T Consensus 43 ~~VhfdGw~~~~D 55 (69)
T 3sd4_A 43 VLIHFKRWNHRYD 55 (69)
T ss_dssp EEEEETTSCGGGC
T ss_pred EEEEeCCCCCCCC
Confidence 5999999655555
No 3
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=26.62 E-value=21 Score=28.83 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=31.8
Q ss_pred ccCCCccccccceEEEeccccccCCCCh--hHHHHHHHHh-CCccc
Q 026044 176 RFLHPDVVSNYDYIFLWDEDLGVENFDP--RRYLEIVKSE-GFEIS 218 (244)
Q Consensus 176 RFLHPdiVa~YeYiFlWDEDLgve~F~~--~rYl~Ivk~~-gLEIS 218 (244)
..+-|+.+..||-+||.+.|+.-+...+ ++|-+++.+. |-+|-
T Consensus 11 ~~~~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~ 56 (140)
T 1vmb_A 11 HHMAYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKID 56 (140)
T ss_dssp ------CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3455889999999999999988766653 8899999999 87774
No 4
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=25.67 E-value=48 Score=29.48 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=35.1
Q ss_pred cHHHHHhhhCCCCeEEEEEEecCccccccccccCCceEEEEEecccchhhhc
Q 026044 124 NVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAK 175 (244)
Q Consensus 124 ~Vd~~V~KF~~~nF~vmLFHYDG~vd~W~dleWs~~aIHVsa~~QtKWWfAK 175 (244)
.|+++++|= ..+|.|++..+.| -+|.+.+|||.-+.-+..-+.|
T Consensus 106 yVEaL~rk~-~tEFNVvv~q~nG-------~d~~s~sihvl~vgk~RiKL~k 149 (230)
T 4dix_A 106 YVEALVRKH-DVDFNVVVTQMSG-------EDHTSESIHLFHVGKMRIKLCK 149 (230)
T ss_dssp HHHHHHTTS-EEEEEEEEEEETT-------EECCCCCEEEEEEESSEEEEEE
T ss_pred HHHHHhhcC-CCcEEEEEEEEcC-------ccCccceEEEEEeccEEEEEec
Confidence 499999997 6789999999999 4677889999877666554443
No 5
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=23.15 E-value=43 Score=24.99 Aligned_cols=24 Identities=13% Similarity=0.477 Sum_probs=15.9
Q ss_pred EEEEEecCccccccc-cccCCceEE
Q 026044 139 VILFHYDGDVNAWRG-LDWSNKAIH 162 (244)
Q Consensus 139 vmLFHYDG~vd~W~d-leWs~~aIH 162 (244)
-+|.||||--+.|++ .+++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 379999996666654 455555555
No 6
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.86 E-value=32 Score=26.22 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=44.2
Q ss_pred ccccc-ccccCCceEEEEEecccchhhhcccCCCccccccceEEEeccccccCCCCh--hHHHHHHHHhCCcccc
Q 026044 148 VNAWR-GLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDP--RRYLEIVKSEGFEISQ 219 (244)
Q Consensus 148 vd~W~-dleWs~~aIHVsa~~QtKWWfAKRFLHPdiVa~YeYiFlWDEDLgve~F~~--~rYl~Ivk~~gLEISQ 219 (244)
|.++. .+.-++..+-....+... +..||-+||-+.|+.=|...+ ++|-+++.++|-+|..
T Consensus 19 v~eler~~r~~e~vlR~l~v~~e~------------Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ 81 (96)
T 2kjw_A 19 VNDLARELRIRDNVRRVMVVASTT------------PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEK 81 (96)
T ss_dssp HHHHHHHHHHCTTCSEEEEEECSS------------SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHhccchhhhhhhheehhh------------hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34443 455667777666666553 457999999999988666554 8899999999988853
No 7
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=21.69 E-value=34 Score=25.75 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.0
Q ss_pred hhHHHHHHHHhCCccccCccCCC
Q 026044 203 PRRYLEIVKSEGFEISQPALDPN 225 (244)
Q Consensus 203 ~~rYl~Ivk~~gLEISQPaLd~~ 225 (244)
++ |-+.+++++| ++||-+|..
T Consensus 72 ~~-~~~ai~e~~l-~~~P~i~~~ 92 (109)
T 2nsc_A 72 DL-IPDTLKDRKL-ILSPIVTER 92 (109)
T ss_dssp TT-HHHHTTTSCC-SSCCCCCCC
T ss_pred HH-HHHHHHHcCc-CCCCccccc
Confidence 45 8899999999 999999853
No 8
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=21.09 E-value=20 Score=24.63 Aligned_cols=10 Identities=60% Similarity=1.242 Sum_probs=7.0
Q ss_pred chhhhcccCC
Q 026044 170 KWWFAKRFLH 179 (244)
Q Consensus 170 KWWfAKRFLH 179 (244)
-|-||||||.
T Consensus 36 aw~ya~rflk 45 (46)
T 1hgv_A 36 AWKYAKRFLK 45 (46)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhc
Confidence 4778888863
No 9
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.06 E-value=16 Score=31.81 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred cccccCCCChhHHHHHHHHhCCcccc
Q 026044 194 EDLGVENFDPRRYLEIVKSEGFEISQ 219 (244)
Q Consensus 194 EDLgve~F~~~rYl~Ivk~~gLEISQ 219 (244)
|.++++.+.++.+|+-++++|++|..
T Consensus 339 E~l~~~~~~~~~~l~~L~~~GI~I~e 364 (365)
T 3abi_A 339 EILGMREDTFRRIIDELKERGISIEG 364 (365)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTCCEEC
T ss_pred hhcccchhhHHHHHHHHHHCCCeeee
Confidence 77788888999999999999999864
No 10
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=18.25 E-value=44 Score=25.61 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.6
Q ss_pred hhcccCCCcccccc------ceEEEeccccc
Q 026044 173 FAKRFLHPDVVSNY------DYIFLWDEDLG 197 (244)
Q Consensus 173 fAKRFLHPdiVa~Y------eYiFlWDEDLg 197 (244)
.-+|.|.|+..+-| +++.-||+|++
T Consensus 38 Lk~R~L~pe~C~Vy~~~~~~~~~IdWdtDi~ 68 (86)
T 1wxm_A 38 LKVRGLNQDCCVVYRLIKGRKTVTAWDTAIA 68 (86)
T ss_dssp HHTTTCCSSSEEEEEESSSCEEEECSSSBST
T ss_pred HHHcCCCHHHeEEEEcCCCCccccchhHhhh
Confidence 45899999999888 58899999986
Done!