Query 026045
Match_columns 244
No_of_seqs 130 out of 714
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 03:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858 Predicted membrane pro 100.0 2.7E-59 5.8E-64 395.6 21.2 209 1-220 1-210 (239)
2 PF04511 DER1: Der1-like famil 100.0 5E-51 1.1E-55 344.9 18.9 195 12-212 1-197 (197)
3 COG5291 Predicted membrane pro 100.0 1E-39 2.3E-44 275.7 10.6 199 12-221 19-218 (313)
4 KOG2632 Rhomboid family protei 99.8 1.1E-18 2.4E-23 150.3 13.7 182 5-195 7-195 (258)
5 PRK10907 intramembrane serine 99.4 1E-12 2.3E-17 116.3 12.2 168 11-198 92-270 (276)
6 PTZ00101 rhomboid-1 protease; 99.3 4.8E-11 1E-15 105.7 13.0 90 11-105 51-150 (278)
7 COG0705 Membrane associated se 99.3 5.1E-11 1.1E-15 102.5 12.6 174 12-196 16-209 (228)
8 PF01694 Rhomboid: Rhomboid fa 99.1 1.6E-10 3.5E-15 91.9 6.5 135 49-196 2-140 (145)
9 KOG4463 Uncharacterized conser 98.5 2.2E-07 4.7E-12 80.5 6.8 168 9-194 8-200 (323)
10 KOG2289 Rhomboid family protei 98.2 1.5E-06 3.3E-11 78.1 3.7 148 42-203 108-259 (316)
11 KOG2890 Predicted membrane pro 98.1 8.8E-06 1.9E-10 72.0 8.1 187 7-200 19-221 (326)
12 PF08551 DUF1751: Eukaryotic i 97.3 0.00033 7.1E-09 52.9 4.2 51 52-106 7-57 (99)
13 KOG2290 Rhomboid family protei 81.4 1.1 2.4E-05 42.5 2.4 38 51-89 449-486 (652)
14 KOG2980 Integral membrane prot 68.0 10 0.00022 34.1 4.9 179 5-193 107-296 (310)
15 PF06946 Phage_holin_5: Phage 23.4 1.2E+02 0.0026 22.6 3.4 18 159-176 31-48 (93)
16 PF11169 DUF2956: Protein of u 21.7 65 0.0014 24.3 1.8 18 157-174 78-95 (103)
No 1
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.7e-59 Score=395.58 Aligned_cols=209 Identities=60% Similarity=1.060 Sum_probs=198.2
Q ss_pred CchhHHHHHhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045 1 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARY 80 (244)
Q Consensus 1 m~~~~~~~~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~ 80 (244)
|.+++.+|+.+||||||++.++|+++++++++++++|.+++++|++|+||+|+||++|+++++|++++++++||+++|+|
T Consensus 1 ~~~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY 80 (239)
T KOG0858|consen 1 ANMDLLNFYLQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRY 80 (239)
T ss_pred CchhHHHHHhcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHH
Confidence 56779999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeecc
Q 026045 81 CKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFT 160 (244)
Q Consensus 81 ~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~ 160 (244)
|++||++.|+++++||++|+++++.++++.+. ..+..+|+++++.+++|+|||+||+.+|+++|++++|
T Consensus 81 ~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~-----------~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~ 149 (239)
T KOG0858|consen 81 SSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL-----------FVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFK 149 (239)
T ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCc
Confidence 99999999999999999999999988775532 2467799999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhhhccCC-CCCCCcCChHHHHHhhcc
Q 026045 161 AAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRM-TGRRPLKTPSFIKALFAD 220 (244)
Q Consensus 161 a~ylP~~~l~~~~l~~~s~~~~l~Gil~Ghly~fL~~~~p~~-~g~~~l~tP~~~~~lf~~ 220 (244)
|+|+||++++++++.+++.+.++.||++||+|+|++|++|+. +|++++|||+|+++++++
T Consensus 150 a~YlPwvll~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~ 210 (239)
T KOG0858|consen 150 APYLPWVLLGFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD 210 (239)
T ss_pred cccchHHHHHHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence 999999999999999987799999999999999999999985 569999999999999987
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=100.00 E-value=5e-51 Score=344.94 Aligned_cols=195 Identities=47% Similarity=0.931 Sum_probs=181.3
Q ss_pred CChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 026045 12 MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRG 91 (244)
Q Consensus 12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~ 91 (244)
+|||||+++++++++++++.+|+++|.++++||+++++|+|+||++|++|++|+.+++++++++++|++|++||+++|++
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~ 80 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQG 80 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHH
Q 026045 92 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGF 171 (244)
Q Consensus 92 ~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~ 171 (244)
+++||+|+++++++++.+.+.+.. ....+.+++++++..+++|+|||+||+++|+++|++++|++|+||+++++
T Consensus 81 ~~ady~~~ll~~~~~i~~~~~~~~------~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~ 154 (197)
T PF04511_consen 81 RSADYLWFLLFGASLILILSLLIG------PYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAF 154 (197)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHH
Confidence 999999999999888877665421 11235578999999999999999999999999999999999999999999
Q ss_pred HHHhcc-hhHHHHHHHHHHHHHHHhhhhccCCC-CCCCcCChH
Q 026045 172 SVFVGA-SAWVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPS 212 (244)
Q Consensus 172 ~~l~~~-s~~~~l~Gil~Ghly~fL~~~~p~~~-g~~~l~tP~ 212 (244)
++++++ +...|+.|+++||+|+|++|++|+.. |++++|||+
T Consensus 155 ~~l~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 155 SLLFGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 999987 78999999999999999999999975 899999995
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1e-39 Score=275.70 Aligned_cols=199 Identities=35% Similarity=0.688 Sum_probs=181.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCC
Q 026045 12 MPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRG 91 (244)
Q Consensus 12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~ 91 (244)
|||+||++..+..+++++..+++++|.++++.|++++|+.|+||++||++++++..++.+++++++|++|++||+.+|+.
T Consensus 19 IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~ 98 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNT 98 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHH
Q 026045 92 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGF 171 (244)
Q Consensus 92 ~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~ 171 (244)
+-.||+||+++++.++..++.+.+ +...|++++..++.|.|+++||+.++++||+|++++||+|++++++
T Consensus 99 ~lv~Y~~yl~~~~l~i~a~s~I~g----------g~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgf 168 (313)
T COG5291 99 SLVEYFWYLLVISLVIFAISNIYG----------GISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGF 168 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc----------chhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHH
Confidence 778999999999888876654421 2346889999999999999999999999999999999999999999
Q ss_pred HHHhc-chhHHHHHHHHHHHHHHHhhhhccCCCCCCCcCChHHHHHhhccc
Q 026045 172 SVFVG-ASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE 221 (244)
Q Consensus 172 ~~l~~-~s~~~~l~Gil~Ghly~fL~~~~p~~~g~~~l~tP~~~~~lf~~~ 221 (244)
+++.+ +....++.|+.+||+..++.++||++ |++.+.||.|.+++|.+.
T Consensus 169 sfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~~~~ 218 (313)
T COG5291 169 SFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLFNEH 218 (313)
T ss_pred HHHhcCCccceeeeeeeeccccccccchhhhh-hcccCCCcccccccccCC
Confidence 99997 66788999999999999999999987 577888888888776443
No 4
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.79 E-value=1.1e-18 Score=150.31 Aligned_cols=182 Identities=23% Similarity=0.304 Sum_probs=138.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHh
Q 026045 5 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLL 84 (244)
Q Consensus 5 ~~~~~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~L 84 (244)
..+++..+|+.|-.++..+.++.+.+.+..+. ...+.+...++|.|+||++|+.++|.+ -+|++|||..+|..+.+.
T Consensus 7 ~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i~--~~~~l~~~~l~~~ql~RL~Ty~l~H~s-~~hllfnmlaL~~~g~~f 83 (258)
T KOG2632|consen 7 VGQFWMKIPLLTSIVVVLAILIYLVSFFPGIV--EVLGLPSELLINWQLYRLITYALVHLS-LPHLLFNMLALWPLGSQF 83 (258)
T ss_pred CccccccchHHHHHHHHHHHHHHHHhccchhh--hHhcCCHHHhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHhchhHH
Confidence 45778899999999999999999988664443 455666677889999999999999998 899999999999999999
Q ss_pred hhcccCCChhhHHHHHHHHHH----HHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEeeec
Q 026045 85 EENSFRGRTADFLYMLLFGAT----FLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLFTF 159 (244)
Q Consensus 85 E~~~f~~~~~~y~~~ll~~~~----~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i~i 159 (244)
|+.++ .+..++++..+.+. +.+++... +..+ .........| ++..++++-+-+-+.|..+.++||.+.+
T Consensus 84 E~~~G--~t~~~l~~~~llalf~gIl~ll~~~~--~~~~--d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~si 157 (258)
T KOG2632|consen 84 ERTHG--TTVRILMFTVLLALFSGILYLLAYHV--FLLS--DLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSI 157 (258)
T ss_pred Hhhcc--ceehHHHHHHHHHHHHHHHHHHHHHH--Hhhc--chhhhcccccccHHHHHHHHHHhhcCcccchhhcccccc
Confidence 99884 35556555543322 21222110 0001 1111111222 6788888888888999999999999999
Q ss_pred cccchHHHHHHHH-HHh-cchhHHHHHHHHHHHHHHHh
Q 026045 160 TAAYLPWVLLGFS-VFV-GASAWVDLLGMIAGHAYYFL 195 (244)
Q Consensus 160 ~a~ylP~~~l~~~-~l~-~~s~~~~l~Gil~Ghly~fL 195 (244)
|+++.||+.++.+ ++. +.|+++|++|+++|+.|-+.
T Consensus 158 P~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 158 PIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred cHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 9999999999886 555 46899999999999999983
No 5
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.44 E-value=1e-12 Score=116.29 Aligned_cols=168 Identities=17% Similarity=0.245 Sum_probs=103.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCccCCceEEee-chhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhccc
Q 026045 11 QMPIITRTYLTAAIVTTVGCSLDIISPFNLCLH-PTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSF 89 (244)
Q Consensus 11 ~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~-~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f 89 (244)
+-.|+|..+++.|++++++..++-.....-.+. +.....++|+||++|+.|.|++ .+|++|||+++|..|+.+|+..
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~-~~Hl~fNml~l~~lG~~iE~~~- 169 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFS-LLHILFNLLWWWYLGGAVEKRL- 169 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCC-HHHHHHHHHHHHHHHHHHHHHH-
Confidence 456899999999999999876643222111122 2223357899999999999998 8999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHH-HHh--hccCCCceeEEEEeeeccccchH
Q 026045 90 RGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMV-YVW--SKQNPFIHMSFLGLFTFTAAYLP 165 (244)
Q Consensus 90 ~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~-y~w--s~~~p~~~v~lfG~i~i~a~ylP 165 (244)
++..++...++++++-.+..... .+ .++.| |+.+++++ |.| .++.|+... .+|..++.
T Consensus 170 --G~~~~l~l~l~s~i~~~~~~~~~------~~----~~~gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~ 231 (276)
T PRK10907 170 --GSGKLIVITLISALLSGWVQSKF------SG----PWFGGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIA 231 (276)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHH------cc----chhhHHHHHHHHHHHHHHHHhccccccch------hhhHHHHH
Confidence 34556555554443322222111 11 12333 55555543 555 455665433 23333322
Q ss_pred HHHH--H--HHHHhcc--hhHHHHHHHHHHHHHHHhhhh
Q 026045 166 WVLL--G--FSVFVGA--SAWVDLLGMIAGHAYYFLEDV 198 (244)
Q Consensus 166 ~~~l--~--~~~l~~~--s~~~~l~Gil~Ghly~fL~~~ 198 (244)
+..+ + +.-+.+. +-.+|+.|.++|.+..+++..
T Consensus 232 f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 232 FALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 2221 1 1112232 347899999999998887643
No 6
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.29 E-value=4.8e-11 Score=105.65 Aligned_cols=90 Identities=16% Similarity=0.204 Sum_probs=67.3
Q ss_pred cCChHHHHHHHHHHHHHHHHhc-C---ccCCc-----eE-EeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045 11 QMPIITRTYLTAAIVTTVGCSL-D---IISPF-----NL-CLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARY 80 (244)
Q Consensus 11 ~iPpvTr~~i~~~~~~~ll~~~-~---~~~p~-----~l-~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~ 80 (244)
++|.+|..+++.+++++++... + ...|. ++ .++++.+ +++|+||++|+.|.|++ .+|+++||+++|..
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~-~~HLl~Nm~~l~~~ 128 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHAN-IFHTFFNVFFQLRM 128 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence 5789999999999999887544 2 12232 12 2455555 57999999999999998 89999999999999
Q ss_pred HHHhhhcccCCChhhHHHHHHHHHH
Q 026045 81 CKLLEENSFRGRTADFLYMLLFGAT 105 (244)
Q Consensus 81 ~~~LE~~~f~~~~~~y~~~ll~~~~ 105 (244)
|..+|+..+ +..|....+++++
T Consensus 129 G~~lE~~~G---~~r~~ilYl~sGi 150 (278)
T PTZ00101 129 GFTLEKNYG---IVKIIILYFLTGI 150 (278)
T ss_pred HHHHHHHHC---hHHHHHHHHHHHH
Confidence 999999883 4445533333333
No 7
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.28 E-value=5.1e-11 Score=102.51 Aligned_cols=174 Identities=24% Similarity=0.224 Sum_probs=123.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCccCCce--------EEeechhhhhhh---chhhhhhhhhccCCCCHHHHHHHHHHHHH
Q 026045 12 MPIITRTYLTAAIVTTVGCSLDIISPFN--------LCLHPTLVVKHY---QFWRLITNFLFFRKMDLDFLFHMFFLARY 80 (244)
Q Consensus 12 iPpvTr~~i~~~~~~~ll~~~~~~~p~~--------l~l~~~~v~~~~---qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~ 80 (244)
.|++|+.++..++++.+........... ..+.+....... |.||++|+.|.|++ -.|+++||..+|.+
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~-~~Hll~N~~~l~~f 94 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAG-FLHLLFNMLALWVF 94 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 4999999999999999887643222111 122232222222 89999999999998 89999999999999
Q ss_pred HHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEe-ee
Q 026045 81 CKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGL-FT 158 (244)
Q Consensus 81 ~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~-i~ 158 (244)
|..+|+..+ +..|+.+.+.++++..+.....+ +....+.+| |+.+++++-.++...|..+...... ++
T Consensus 95 g~~le~~~G---~~~f~~~yl~~gl~~~~~~~~~~-------~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~ 164 (228)
T COG0705 95 GSNLERRLG---TLRFLLFYLLSGLLAGLAQVLFG-------PKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLP 164 (228)
T ss_pred hHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHc-------ccccCcccchhHHHHHHHHHHHHHccccchhhhhccCc
Confidence 999999884 33466555555544333322211 111124455 8889999999999999998887755 77
Q ss_pred ccccchHHHHHHHHHHhc-ch------hHHHHHHHHHHHHHHHhh
Q 026045 159 FTAAYLPWVLLGFSVFVG-AS------AWVDLLGMIAGHAYYFLE 196 (244)
Q Consensus 159 i~a~ylP~~~l~~~~l~~-~s------~~~~l~Gil~Ghly~fL~ 196 (244)
.++..+-.+.++.+++++ .+ ..+|+.|++.|.+|....
T Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~ 209 (228)
T COG0705 165 RPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALL 209 (228)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777887764 22 578999999999988643
No 8
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.10 E-value=1.6e-10 Score=91.90 Aligned_cols=135 Identities=21% Similarity=0.210 Sum_probs=79.4
Q ss_pred hhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhh
Q 026045 49 KHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKII 128 (244)
Q Consensus 49 ~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~ 128 (244)
+++|+||++|+.|.|.+ ..|+++|++.++.++..+|+.. ++.++....+.+++...+...+... . ..+
T Consensus 2 ~~~~~wrl~T~~f~h~~-~~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~-----~---~~~ 69 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHAN-FLHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSP-----P---NQP 69 (145)
T ss_dssp GCC-TTHHHHGGG--SS-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH------S------
T ss_pred CCCcchhhhHHHHHccC-HHHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhccccccc-----c---ccc
Confidence 67999999999999998 8999999999999999999988 3445555444444333333222110 0 002
Q ss_pred hhH-HHHHHHHHHHhhccCCCceeEE---EEeeeccccchHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhh
Q 026045 129 FLS-NSLTLMMVYVWSKQNPFIHMSF---LGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLE 196 (244)
Q Consensus 129 ~l~-~~l~~~l~y~ws~~~p~~~v~l---fG~i~i~a~ylP~~~l~~~~l~~~s~~~~l~Gil~Ghly~fL~ 196 (244)
..| ++.++++.-......|+.+... ...+.++..++++.+.... ..+.+...|+.|.++|.+|.+..
T Consensus 70 ~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~ 140 (145)
T PF01694_consen 70 YVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLI 140 (145)
T ss_dssp --SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH
Confidence 233 5555555555544444332211 2234444445554333322 22356789999999999998764
No 9
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=2.2e-07 Score=80.51 Aligned_cols=168 Identities=17% Similarity=0.349 Sum_probs=102.4
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhcCccCCceEEeechhhhh-hhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhc
Q 026045 9 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVK-HYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEEN 87 (244)
Q Consensus 9 ~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l~l~~~~v~~-~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~ 87 (244)
+.++| |||..++.+.+.++.....-.++ .+.++++.++. ++|+||++-+-|.+.. ..+..+.++.+| +.+.+|+.
T Consensus 8 ~~nmp-VTK~~~iT~~~~~vvagI~~~k~-~f~l~y~~~l~~y~qywrlL~~qF~~~n-~~e~~~~l~I~Y-~fR~~ERl 83 (323)
T KOG4463|consen 8 FHNMP-VTKAFVITSALFTVVAGIQGRKS-KFGLSYQDILEKYFQYWRLLMSQFAFSN-TPELMFGLYILY-YFRVFERL 83 (323)
T ss_pred ccccc-hHHHHHHHHHHHHHHHHhhhccc-ccccchhHHHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHH-HHHHHHHH
Confidence 45664 99999999999888765543444 46677776665 5999999999999886 788888888777 66899998
Q ss_pred ccCCChhhHHHHHHHHHHH----HHHHHHh----hcccccccchhhhhhhhH-HHHHHHHHHHhhccCCC-ceeEEEEee
Q 026045 88 SFRGRTADFLYMLLFGATF----LTGTVLI----GGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPF-IHMSFLGLF 157 (244)
Q Consensus 88 ~f~~~~~~y~~~ll~~~~~----i~~~s~~----~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~-~~v~lfG~i 157 (244)
.++.| |+-++++..++ ..+++++ .+.+.| +. .+++++..|-+--.-|- ..+.+|+ +
T Consensus 84 LGShk---y~~fiv~s~~~~~l~~~il~~l~~~~~~nl~~----------~qp~~liFa~~~~~y~~ip~~~f~r~f~-~ 149 (323)
T KOG4463|consen 84 LGSHK---YSVFIVFSGTVSLLLEVILLSLLKDTTANLLT----------SQPYGLIFASFIPFYLDIPVSTFFRVFG-V 149 (323)
T ss_pred hcccc---ceeehhHHHHHHHHHHHHHHHHHHHHHhhhhh----------cCCCceeeeeccceEEEecceeEEEeec-c
Confidence 85444 65555554332 2222222 111212 11 13555555444333343 3445665 6
Q ss_pred ecccc---chHHHHHHHHHHhc----c-------hhHHHHHHHHHHHHHHH
Q 026045 158 TFTAA---YLPWVLLGFSVFVG----A-------SAWVDLLGMIAGHAYYF 194 (244)
Q Consensus 158 ~i~a~---ylP~~~l~~~~l~~----~-------s~~~~l~Gil~Ghly~f 194 (244)
++..| .+|.+=++++...+ . +....+.|++.||+|..
T Consensus 150 ~f~dkni~~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~ 200 (323)
T KOG4463|consen 150 NFSDKNISFIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRL 200 (323)
T ss_pred cccccceeeecccchhhhcCcccccccccceeecccccccchhhhhhHhhc
Confidence 66666 33333333433221 1 23457789999999864
No 10
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=98.16 E-value=1.5e-06 Score=78.09 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=82.7
Q ss_pred eechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhccccccc
Q 026045 42 LHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLS 121 (244)
Q Consensus 42 l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~ 121 (244)
..++...++.|.||++|+.+.|.+ .+|+.+|+......|-.||+.++. ..-.+.|++ +++.-.+++.++....+..
T Consensus 108 ~~i~~~~~r~E~WRllTym~LHaG-i~HL~~N~~~ql~iGi~LE~~~G~--~RiglIYl~-gg~aGSlls~l~d~~~~sV 183 (316)
T KOG2289|consen 108 LLIYKPVHRGELWRLLTYMWLHAG-IFHLLLNMLSQLFIGIPLEQVHGF--LRIGLIYLA-GGVAGSLLSSLFDPNSISV 183 (316)
T ss_pred ceecChhhhchhHHHHHHHHHhcC-HHHHHHHHHHHHhccccHHhhcCc--eEEeeehhh-hhhhhHHHHHHhccCCcee
Confidence 344455678999999999999998 899999999999999999998743 222333333 2221222233321111111
Q ss_pred chhhhhhhhHHHHHHHHHHHhhccCCCceeEEEEeeeccccchHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHhhh
Q 026045 122 ESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG----ASAWVDLLGMIAGHAYYFLED 197 (244)
Q Consensus 122 ~~~~~~~~l~~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a~ylP~~~l~~~~l~~----~s~~~~l~Gil~Ghly~fL~~ 197 (244)
|......-|-.+....++-=|........ +.-.-.+.++++.-+| .....|+.|...|-.+-|+..
T Consensus 184 GASggvfaLlgA~Ls~l~~Nw~~m~~~~~----------~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~ 253 (316)
T KOG2289|consen 184 GASGGVFALLGAHLSNLLTNWTIMKNKFA----------ALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLH 253 (316)
T ss_pred cccHHHHHHHHHHHHHHHhhHHHhcchHH----------HHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhh
Confidence 11111111223333444444543332211 1111122223444444 234678999999988888877
Q ss_pred hccCCC
Q 026045 198 VYPRMT 203 (244)
Q Consensus 198 ~~p~~~ 203 (244)
+-|...
T Consensus 254 ~~g~~~ 259 (316)
T KOG2289|consen 254 IGGQLG 259 (316)
T ss_pred hcccee
Confidence 766543
No 11
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=98.15 E-value=8.8e-06 Score=72.04 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=115.7
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhcCc-----cCCceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHH
Q 026045 7 DWYKQMPIITRTYLTAAIVTTVGCSLDI-----ISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYC 81 (244)
Q Consensus 7 ~~~~~iPpvTr~~i~~~~~~~ll~~~~~-----~~p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~ 81 (244)
+-..+.-++-+.++..++..++.+..+. ..| .+.+-|.+++ +++|+++|+.|+-.. -...+.+...+--.|
T Consensus 19 ~~l~n~~vvvs~ic~~tlf~yi~sf~~~t~~l~~~p-~y~lvp~~~~--~~~WtliTs~fie~~-vw~V~~sv~~L~v~G 94 (326)
T KOG2890|consen 19 ALLLNLEVVVSAICVLTLFGYILSFGNFTILLATLP-GYQLVPNALF--FFPWTLITSGFIELN-VWDVLVSVLTLSVGG 94 (326)
T ss_pred hHhhhchhHHHHHHHHHHHHHHHHHHHhHHHHHhcc-ccccCCcchh--hhhHHHHhcchhhhh-HHHHHHHHHheeecc
Confidence 3344455566677766666666654321 122 2334555555 699999999987554 899999999999999
Q ss_pred HHhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccc--cc-hhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEee
Q 026045 82 KLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL--SE-SFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLF 157 (244)
Q Consensus 82 ~~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~--~~-~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i 157 (244)
+.+|..++ ..+...++.+......+ ...+.+.+.|. .. -....++-| .+...+++.+|-+..||..+.---.-
T Consensus 95 ~~lEp~Wg--~~e~lkff~ivn~~~~l-~v~v~~~l~Y~it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~ 171 (326)
T KOG2890|consen 95 KFLEPNWG--SLELLKFFAIVNGSTTL-VVLVPALLLYMITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSG 171 (326)
T ss_pred eeeccCCC--CHHHHHHHHHhhchhHH-HHHHHHHHHHHHhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccch
Confidence 99999993 33344433333322211 11111222221 00 001122333 67888999999999999987644333
Q ss_pred eccccchHHHHHHHHHHhc-------chhHHHHHHHHHHHHHHHhhhhcc
Q 026045 158 TFTAAYLPWVLLGFSVFVG-------ASAWVDLLGMIAGHAYYFLEDVYP 200 (244)
Q Consensus 158 ~i~a~ylP~~~l~~~~l~~-------~s~~~~l~Gil~Ghly~fL~~~~p 200 (244)
++..+.+|...++++++.. .++..-..|..++..|..+..--|
T Consensus 172 r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~h~ 221 (326)
T KOG2890|consen 172 RFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQRHP 221 (326)
T ss_pred hhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecccCC
Confidence 4555559988777665432 455667789999999987665555
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=97.30 E-value=0.00033 Score=52.87 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=44.5
Q ss_pred chhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcccCCChhhHHHHHHHHHHH
Q 026045 52 QFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATF 106 (244)
Q Consensus 52 qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f~~~~~~y~~~ll~~~~~ 106 (244)
.+||++|+.|+..+ .+.++++...++..|+.+|+.+ ++.+++.++++....
T Consensus 7 ~pWtl~T~~fve~~-i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~ 57 (99)
T PF08551_consen 7 YPWTLFTAGFVETN-IIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVI 57 (99)
T ss_pred ehHHHHHHHHHHhH-HHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHH
Confidence 79999999999887 8999999999999999999999 367888887766544
No 13
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=81.37 E-value=1.1 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=35.1
Q ss_pred hchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhccc
Q 026045 51 YQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENSF 89 (244)
Q Consensus 51 ~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~f 89 (244)
-|++||.||.|.|.+ -+|.+..+.+=+...+.||+..+
T Consensus 449 dQfYRL~~SLFlHag-viH~~vSi~FQm~vmrdlEkL~g 486 (652)
T KOG2290|consen 449 DQFYRLWLSLFLHAG-VIHLLVSICFQMTVMRDLEKLAG 486 (652)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 599999999999998 89999999999999999999663
No 14
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=67.96 E-value=10 Score=34.15 Aligned_cols=179 Identities=13% Similarity=-0.010 Sum_probs=100.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhcCccCCceE-EeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHH-
Q 026045 5 VEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNL-CLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCK- 82 (244)
Q Consensus 5 ~~~~~~~iPpvTr~~i~~~~~~~ll~~~~~~~p~~l-~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~- 82 (244)
.+.|.+-.|-+--.+++.++.++.+-......-.+. ++--+.+ ++.-.|-++++.|-|-. .+|.--||+.++.|..
T Consensus 107 ~k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~-~~t~~w~i~~s~Fsh~~-a~h~g~~~~~~~~y~~~ 184 (310)
T KOG2980|consen 107 WKHWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNA-YKTGCWKIILSTFSHYS-ALHLGPNMLVLKSYLAG 184 (310)
T ss_pred hHHHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhccc-ccccceeEEeehhcchh-HhhhcHHHHHHHHHhcc
Confidence 356777777755566777777777765543321111 1111112 34677889999988876 7998888888888877
Q ss_pred HhhhcccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHHHhhccCCCceeEEEEeeeccc
Q 026045 83 LLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLFTFTA 161 (244)
Q Consensus 83 ~LE~~~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y~ws~~~p~~~v~lfG~i~i~a 161 (244)
++-...+ ....++.|+ .+...-.. +. .. .......-.|-|| ++-++++.-+.+-++|+.+..+..++++|+
T Consensus 185 a~~~~~~--~~~~~Alyl--Sa~~~~~~--i~-~~-~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~~v~~ 256 (310)
T KOG2980|consen 185 ALKGSLG--FSSFFALYL--SAGVKGLF--IS-VK-DKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVFPVPA 256 (310)
T ss_pred cccCCcc--hhhccccee--ccccccce--eE-ee-ccccccccccccccchHHHHHHHHHhhcCcCcceeEEEeecccc
Confidence 5555442 223334333 11111000 00 00 0000001123455 788888888889999999998888899998
Q ss_pred cchHHHHHHHHHH-----hc---chhHHHHHHHHHHHHHH
Q 026045 162 AYLPWVLLGFSVF-----VG---ASAWVDLLGMIAGHAYY 193 (244)
Q Consensus 162 ~ylP~~~l~~~~l-----~~---~s~~~~l~Gil~Ghly~ 193 (244)
-.---+-.+..+- ++ .+-.+|++|-+.|-.|-
T Consensus 257 ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va 296 (310)
T KOG2980|consen 257 GAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVA 296 (310)
T ss_pred cchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHH
Confidence 5443323332221 12 12346777777665554
No 15
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.37 E-value=1.2e+02 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.514 Sum_probs=14.3
Q ss_pred ccccchHHHHHHHHHHhc
Q 026045 159 FTAAYLPWVLLGFSVFVG 176 (244)
Q Consensus 159 i~a~ylP~~~l~~~~l~~ 176 (244)
+|.||+|++..++-.+.|
T Consensus 31 v~~K~iPlIs~viGilLG 48 (93)
T PF06946_consen 31 VPNKWIPLISVVIGILLG 48 (93)
T ss_pred CCcchhhHHHHHHHHHHH
Confidence 799999999887765543
No 16
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.68 E-value=65 Score=24.34 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=14.5
Q ss_pred eeccccchHHHHHHHHHH
Q 026045 157 FTFTAAYLPWVLLGFSVF 174 (244)
Q Consensus 157 i~i~a~ylP~~~l~~~~l 174 (244)
..-...+|||++|+++++
T Consensus 78 ~~~~~~~LPW~LL~lSW~ 95 (103)
T PF11169_consen 78 SQSRSSWLPWGLLVLSWI 95 (103)
T ss_pred ccccccchhHHHHHHHHH
Confidence 445677999999999983
Done!