Query 026045
Match_columns 244
No_of_seqs 130 out of 714
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:21:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.7 2.4E-16 8.3E-21 130.2 11.3 166 11-195 2-177 (181)
2 2nr9_A Protein GLPG homolog; i 99.5 3.6E-14 1.2E-18 118.6 10.7 167 10-196 6-183 (196)
3 2jpk_A Bacteriocin lactococcin 18.3 64 0.0022 18.3 1.7 17 160-176 2-18 (35)
4 1emz_A Envelope glycoprotein E 7.9 1.9E+02 0.0065 15.5 1.5 14 184-197 4-17 (26)
5 2b3g_B Cellular tumor antigen 6.2 2E+02 0.0068 15.3 1.0 11 3-13 16-26 (28)
6 4g59_A RAE-1-gamma, retinoic a 5.9 1.7E+02 0.0057 23.6 0.9 15 229-243 188-202 (205)
7 2z16_A Matrix protein 1, M1; A 4.7 6.6E+02 0.023 19.1 3.4 22 4-25 48-72 (165)
8 1w8x_P Protein P16, protein S, 4.4 4.7E+02 0.016 18.1 2.2 22 130-151 10-31 (117)
9 1rij_A E6APN1 peptide; Trp-CAG 4.0 3.6E+02 0.012 13.9 1.0 6 233-238 18-23 (26)
10 3nsw_A Excretory-secretory pro 3.6 1.6E+02 0.0053 20.3 -0.8 8 50-57 39-46 (106)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.67 E-value=2.4e-16 Score=130.21 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=109.7
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCccCC--ceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhcc
Q 026045 11 QMPIITRTYLTAAIVTTVGCSLDIISP--FNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEENS 88 (244)
Q Consensus 11 ~iPpvTr~~i~~~~~~~ll~~~~~~~p--~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~~ 88 (244)
+.||+|+.+++.|++++++....-..+ ..+.++|+. .+++|+||++|+.|.|++ ..|+++||+.++.+|+.+|+..
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~-~~Hl~~Nm~~l~~~g~~~E~~~ 79 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFS-LMHILFNLLWWWYLGGAVEKRL 79 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999876532111 234466654 467999999999999998 7999999999999999999987
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHH---HhhccCCCceeEEEEeeeccccch
Q 026045 89 FRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVY---VWSKQNPFIHMSFLGLFTFTAAYL 164 (244)
Q Consensus 89 f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y---~ws~~~p~~~v~lfG~i~i~a~yl 164 (244)
++.+|+...+.+++...+.+.... . .+..| |+.+++++- +.++++|+.++. ++.|...+
T Consensus 80 ---G~~~fl~~yl~~~i~~~l~~~~~~------~----~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~ 142 (181)
T 2xov_A 80 ---GSGKLIVITLISALLSGYVQQKFS------G----PWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIF 142 (181)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH------C----SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHH
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHhc------C----CCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHH
Confidence 456677666655544333322211 0 01222 444443332 346788887653 23333322
Q ss_pred HHHHHHHHHHh----cchhHHHHHHHHHHHHHHHh
Q 026045 165 PWVLLGFSVFV----GASAWVDLLGMIAGHAYYFL 195 (244)
Q Consensus 165 P~~~l~~~~l~----~~s~~~~l~Gil~Ghly~fL 195 (244)
-.+.+++.+.. +.+..+|+.|+++|.++..+
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~ 177 (181)
T 2xov_A 143 ALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV 177 (181)
T ss_dssp HHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 22333444432 34678999999999998764
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.53 E-value=3.6e-14 Score=118.57 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=108.6
Q ss_pred hcCChHHHHHHHHHHHHHHHHhcCccC--CceEEeechhhhhhhchhhhhhhhhccCCCCHHHHHHHHHHHHHHHHhhhc
Q 026045 10 KQMPIITRTYLTAAIVTTVGCSLDIIS--PFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFFLARYCKLLEEN 87 (244)
Q Consensus 10 ~~iPpvTr~~i~~~~~~~ll~~~~~~~--p~~l~l~~~~v~~~~qiWRl~Ts~f~~g~~~l~~lf~~~~l~~~~~~LE~~ 87 (244)
.+.||+|+.+++.+++++++....-.. ...+.++|+.+ +++|+||++|+.|.|++ ..|+++||+.++..|..+|+.
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~-~~Hl~~Nm~~l~~~G~~lE~~ 83 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLS-NLHILFNLSWFFIFGGMIERT 83 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999987653111 12345677665 67899999999999998 899999999999999999998
Q ss_pred ccCCChhhHHHHHHHHHHHHHHHHHhhcccccccchhhhhhhhH-HHHHHHHHH---HhhccCCCceeEEEEeeeccccc
Q 026045 88 SFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLS-NSLTLMMVY---VWSKQNPFIHMSFLGLFTFTAAY 163 (244)
Q Consensus 88 ~f~~~~~~y~~~ll~~~~~i~~~s~~~~~~~y~~~~~~~~~~l~-~~l~~~l~y---~ws~~~p~~~v~lfG~i~i~a~y 163 (244)
. ++..|+...+.+++...+.+.... +. ...| |+.+++++- +..++.|+. . .++.+...
T Consensus 84 ~---G~~~~l~~yl~~~~~~~l~~~~~~------~~----~~vGaSGai~gl~g~~~~~~~~~~~~-~----~~~~~~~~ 145 (196)
T 2nr9_A 84 F---GSVKLLMLYVVASAITGYVQNYVS------GP----AFFGLSGVVYAVLGYVFIRDKLNHHL-F----DLPEGFFT 145 (196)
T ss_dssp H---CHHHHHHHHHHHHHHHHHHHHHHH------CS----CCCCSHHHHHHHHHHHHHHHHSSTTS-C----CCCCSSTT
T ss_pred H---ChHHHHHHHHHHHHHHHHHHHHhc------CC----CeeeHHHHHHHHHHHHHHHHHhcchh-h----cchHHHHH
Confidence 8 355666555555443333222211 00 1122 344443332 224566664 1 13444444
Q ss_pred hHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHhh
Q 026045 164 LPWVLLGFSVFV-----GASAWVDLLGMIAGHAYYFLE 196 (244)
Q Consensus 164 lP~~~l~~~~l~-----~~s~~~~l~Gil~Ghly~fL~ 196 (244)
+..+.+++++.. +.+..+|+.|+++|.++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~ 183 (196)
T 2nr9_A 146 MLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID 183 (196)
T ss_dssp TTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 333334444443 246789999999999987653
No 3
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=18.35 E-value=64 Score=18.28 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.0
Q ss_pred cccchHHHHHHHHHHhc
Q 026045 160 TAAYLPWVLLGFSVFVG 176 (244)
Q Consensus 160 ~a~ylP~~~l~~~~l~~ 176 (244)
|.+|+||+.-+.+++.|
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 56899999999988764
No 4
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.93 E-value=1.9e+02 Score=15.51 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhh
Q 026045 184 LGMIAGHAYYFLED 197 (244)
Q Consensus 184 ~Gil~Ghly~fL~~ 197 (244)
-|++.|+.|+...-
T Consensus 4 wGvl~glayfsm~g 17 (26)
T 1emz_A 4 WGVLAGIAYFSMVG 17 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhh
Confidence 47888999987543
No 5
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=6.22 E-value=2e+02 Score=15.31 Aligned_cols=11 Identities=27% Similarity=1.026 Sum_probs=7.3
Q ss_pred hhHHHHHhcCC
Q 026045 3 QAVEDWYKQMP 13 (244)
Q Consensus 3 ~~~~~~~~~iP 13 (244)
++++||+.+=|
T Consensus 16 ddi~qw~s~dp 26 (28)
T 2b3g_B 16 DDIEQWFTEDP 26 (28)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHhhcCC
Confidence 46889998765
No 6
>4g59_A RAE-1-gamma, retinoic acid early-inducible protein 1-gamma; MHC-I fold, immunoevasion, stress induced ligand, immune SYS; HET: NAG; 2.44A {Mus musculus} PDB: 1jfm_A 1jsk_C
Probab=5.93 E-value=1.7e+02 Score=23.59 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCC
Q 026045 229 ANVRFAPPPAEEVHQ 243 (244)
Q Consensus 229 ~~~~~~~~~~~~~~~ 243 (244)
+....+++.+||||.
T Consensus 188 ~~~~~~~~~~~~~~~ 202 (205)
T 4g59_A 188 TQLTSTSPLPPPSHS 202 (205)
T ss_dssp ---------------
T ss_pred cCCCcCccCCCcccC
Confidence 666777888888875
No 7
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=4.70 E-value=6.6e+02 Score=19.13 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=16.3
Q ss_pred hHHHHHhcCC---hHHHHHHHHHHH
Q 026045 4 AVEDWYKQMP---IITRTYLTAAIV 25 (244)
Q Consensus 4 ~~~~~~~~iP---pvTr~~i~~~~~ 25 (244)
.+.||+++-| |+||.++...+.
T Consensus 48 almEWlk~r~~ls~l~k~ilg~~~~ 72 (165)
T 2z16_A 48 ALMEWLKTRPILSPLTKGILGFVFT 72 (165)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccchHHhhhhheEEE
Confidence 4779998865 788888776554
No 8
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=4.44 E-value=4.7e+02 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.723 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhccCCCcee
Q 026045 130 LSNSLTLMMVYVWSKQNPFIHM 151 (244)
Q Consensus 130 l~~~l~~~l~y~ws~~~p~~~v 151 (244)
.|.+++..+++.|-|.-|..+|
T Consensus 10 vggglvliliwlwfrnrpaaqv 31 (117)
T 1w8x_P 10 VGGGLVLILIWLWFRNRPAAQV 31 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCS
T ss_pred ecCchhhHHHHHHHccChHHHH
Confidence 4567888889999888887665
No 9
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=3.97 E-value=3.6e+02 Score=13.94 Aligned_cols=6 Identities=50% Similarity=1.004 Sum_probs=2.7
Q ss_pred CCCCCC
Q 026045 233 FAPPPA 238 (244)
Q Consensus 233 ~~~~~~ 238 (244)
+||||+
T Consensus 18 grppps 23 (26)
T 1rij_A 18 GRPPPS 23 (26)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 444444
No 10
>3nsw_A Excretory-secretory protein 2; hookworm, excretory-secretory protei merohedral twinning, immunomodulator, netrin domain, immune; HET: EPE; 1.75A {Ancylostoma ceylanicum}
Probab=3.63 E-value=1.6e+02 Score=20.30 Aligned_cols=8 Identities=50% Similarity=1.298 Sum_probs=6.5
Q ss_pred hhchhhhh
Q 026045 50 HYQFWRLI 57 (244)
Q Consensus 50 ~~qiWRl~ 57 (244)
+.|+||+.
T Consensus 39 nlqywrly 46 (106)
T 3nsw_A 39 NLQYWRLY 46 (106)
T ss_dssp EEEEEEEC
T ss_pred cceeEEEe
Confidence 57999986
Done!