BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026046
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 113 IYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
I+VAV K S L W L++ I LIHV + +P K P V E++
Sbjct: 47 IFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEEEVR 104
Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
F +E K +L +L C Q V + + IE + + I+ LI L IRKLV+G
Sbjct: 105 VFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMGAA 163
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGK-LPRNQVNPEQL 170
+ VA+ S S ++W + + F L+H+ P + VP+P+G +P ++V + +
Sbjct: 22 VVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVV 81
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230
+ + + ++L+ + + KV V+ ++IESD VA AI + + +I ++V+G +
Sbjct: 82 TAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGGS 141
Query: 231 KSSL 234
S
Sbjct: 142 SRSF 145
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 31/138 (22%)
Query: 105 NGTQE---EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLP 161
+G+Q+ ++ IYVAVG + L W +++ I +H PL +
Sbjct: 5 SGSQQLLMDEKIYVAVGSDLGNKSTLVWAIQNTGGKEFCIVHVH---------QPLYR-- 53
Query: 162 RNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLN 221
+E K +++L K+L C Q +V + + I+ + V K I+ LI N
Sbjct: 54 --------------KEKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERN 99
Query: 222 IRKLVVGT---TKSSLRL 236
++KLV+G T+ S+R+
Sbjct: 100 VKKLVMGAASDTRYSMRM 117
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 113 IYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFP-QVKFVPSPLGKLPRNQVNPEQL 170
+Y+AVG Q + W L+ N I L+H+ FV +P GKLP + V+ E+L
Sbjct: 22 VYIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQDFVYTPFGKLPASSVSEEKL 81
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQ 194
+ E K +LL K++ C +
Sbjct: 82 QVLRKYEDQKIDKLLSKYITFCGK 105
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 99 FDVANGNGTQEEDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL 157
D+ +++ IYVAV K S +L W ++++ I +H P P
Sbjct: 22 IDIPESMEINKKEKIYVAVTEKDLESKSSLVWAIQNSGGKEFCIVHVHQ-------PIP- 73
Query: 158 GKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLI 217
++ EQ +E K + +K+L C Q +V + + IE+D V K IL LI
Sbjct: 74 -----GEMFHEQKLRLYRKEKDKAHKNSEKYLQICRQMQVTAEIIYIETDSVEKGILQLI 128
Query: 218 PVLNIRKLVVGTT 230
+ KLV+G
Sbjct: 129 SQRGVTKLVMGAA 141
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 101 VANGNGTQEEDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGK 159
+A GN D+++VAV + S L W LR+ + + ++HV+ Q K K
Sbjct: 5 MAMGN-----DVVHVAVKSDVRESRSTLLWALRNL--GAKKVCILHVY-QPKTASPAARK 56
Query: 160 LPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTV---LIESDLVAKAILDL 216
L E+LE M + L + D C Q V D + IE + V + IL+L
Sbjct: 57 L-------EELEAIMYE-------TLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILEL 102
Query: 217 IPVLNIRKLVVGTT 230
I I+KLV+G
Sbjct: 103 IHESKIKKLVMGAA 116
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 112 IIYVAV-GKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVNPEQ 169
I+ VA+ G + + + W L+ + ++F L+HV P+ S K V +
Sbjct: 7 IVAVAIKGNNSKTKGVVRWALQEFASQEHVVFKLLHVQPRDSNSVSTTRKDLTTSVYKKD 66
Query: 170 LETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGT 229
++ K R++L D +V +D +++ESD +A AI + I +LV+G
Sbjct: 67 VDR-------KTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQDHGISELVIGA 119
Query: 230 TKSSLRLHQKLARS 243
+ SS+ KL RS
Sbjct: 120 S-SSIIFSWKLKRS 132
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLGKLPRNQVN-PEQL 170
+ +A+ S S + + W L + + F LIH+ P++ +P+ G N V+ E+L
Sbjct: 34 VALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTASG----NIVSISEEL 89
Query: 171 ETFMA-------QETGKRRQLLQKFLDTCSQSKVMVDTVLIESDL--------------V 209
E A QET + LL+ F C + K+ +D ES L V
Sbjct: 90 EEVAAAYRQKVMQET--KETLLKPFKKMCERKKLKIDETRFESSLTKVAVELQVLESNSV 147
Query: 210 AKAILDLIPVLNIRKLVVG 228
A AI + I L++G
Sbjct: 148 AVAITKEVNQHLISNLIIG 166
>sp|O48686|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana
GN=SNL3 PE=1 SV=3
Length = 1330
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 27/161 (16%)
Query: 9 EGNQASSGD---DKYPIPLTSYINTISSSSSTS--------SRSGSTSSIMSEIEEEEEE 57
EG + +GD D + + + T S ++ ++ SR G S + + E + E
Sbjct: 894 EGELSPNGDFEEDNFAVYAKTDFETFSKANDSTGNNISGDRSREGEPSCLETRAENDAEG 953
Query: 58 EENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAV 117
+EN S S S+ E D +G E+ D+ N N + E
Sbjct: 954 DENAARS-SEDSRNEYENGDVSGTESGGGEDPED--------DLDNNNKGESE------- 997
Query: 118 GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLG 158
G+++ DA + P + FL+HV P VK+VPS +
Sbjct: 998 GEAECMADAHDAEENGSALPVSARFLLHVKPLVKYVPSAIA 1038
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIF-LIHVFPQVKFVPSPLG-KLPRNQVNPEQL 170
+ VA+ + S + W L + F L++V P V ++P+P+G + +++ + +
Sbjct: 24 VAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVV 83
Query: 171 ETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIES 206
+ + ++L+ + + KV V+ +L++S
Sbjct: 84 SAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDS 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.333
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,923,652
Number of Sequences: 539616
Number of extensions: 3315735
Number of successful extensions: 23847
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 21218
Number of HSP's gapped (non-prelim): 1995
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)