Query 026046
Match_columns 244
No_of_seqs 176 out of 1571
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.8 3.3E-20 7.2E-25 149.4 14.1 118 112-236 1-119 (146)
2 PRK09982 universal stress prot 99.8 7.3E-19 1.6E-23 142.7 12.6 120 109-239 2-121 (142)
3 PRK15456 universal stress prot 99.8 7.3E-18 1.6E-22 136.0 13.8 117 110-236 2-120 (142)
4 PRK15005 universal stress prot 99.8 7.4E-18 1.6E-22 135.2 13.3 119 110-236 2-122 (144)
5 PRK15118 universal stress glob 99.7 2.3E-17 4.9E-22 133.0 13.2 121 109-241 2-123 (144)
6 PRK10116 universal stress prot 99.7 1E-15 2.2E-20 122.7 13.7 118 109-239 2-121 (142)
7 cd01988 Na_H_Antiporter_C The 99.6 6.7E-15 1.4E-19 115.3 13.2 107 112-234 1-108 (132)
8 PF00582 Usp: Universal stress 99.6 7.1E-15 1.5E-19 113.6 11.7 116 110-236 2-118 (140)
9 cd01987 USP_OKCHK USP domain i 99.6 1.2E-14 2.6E-19 113.9 12.4 101 112-237 1-102 (124)
10 PRK11175 universal stress prot 99.6 2.2E-14 4.8E-19 128.8 13.6 121 109-237 2-124 (305)
11 PRK12652 putative monovalent c 99.6 8.5E-14 1.8E-18 130.3 15.1 105 108-230 3-122 (357)
12 PRK11175 universal stress prot 99.5 1.4E-13 3E-18 123.6 12.0 117 109-236 151-277 (305)
13 cd00293 USP_Like Usp: Universa 99.5 5.8E-13 1.3E-17 102.1 13.6 106 112-234 1-107 (130)
14 COG0589 UspA Universal stress 99.3 5.5E-11 1.2E-15 94.4 14.4 128 109-241 4-136 (154)
15 PRK10490 sensor protein KdpD; 98.8 6.8E-08 1.5E-12 100.1 12.8 101 109-234 249-350 (895)
16 COG2205 KdpD Osmosensitive K+ 98.6 5.5E-07 1.2E-11 91.3 12.1 102 109-235 247-349 (890)
17 TIGR02432 lysidine_TilS_N tRNA 97.1 0.0099 2.1E-07 50.0 11.4 94 112-232 1-110 (189)
18 cd01984 AANH_like Adenine nucl 97.1 0.0024 5.3E-08 46.9 6.7 33 113-146 1-33 (86)
19 PF01171 ATP_bind_3: PP-loop f 96.4 0.042 9.2E-07 46.3 10.7 93 112-231 1-106 (182)
20 cd01992 PP-ATPase N-terminal d 96.3 0.057 1.2E-06 45.0 10.4 96 112-234 1-109 (185)
21 PLN03159 cation/H(+) antiporte 94.8 0.31 6.6E-06 50.9 11.6 118 109-230 629-751 (832)
22 cd01993 Alpha_ANH_like_II This 94.5 0.38 8.3E-06 39.7 9.5 38 112-149 1-40 (185)
23 PRK10696 tRNA 2-thiocytidine b 93.6 1.2 2.6E-05 39.8 11.4 93 109-231 28-141 (258)
24 COG0037 MesJ tRNA(Ile)-lysidin 92.5 1.2 2.5E-05 40.0 9.8 39 110-150 21-59 (298)
25 PRK12342 hypothetical protein; 91.2 0.92 2E-05 41.0 7.6 86 116-230 30-118 (254)
26 TIGR00268 conserved hypothetic 90.5 3.2 6.8E-05 36.9 10.3 36 109-148 11-46 (252)
27 PLN03159 cation/H(+) antiporte 89.4 2.3 5.1E-05 44.4 9.8 118 109-231 457-580 (832)
28 COG2086 FixA Electron transfer 87.9 1.3 2.9E-05 40.2 6.0 82 115-230 31-120 (260)
29 TIGR00342 thiazole biosynthesi 87.4 11 0.00024 35.6 12.2 40 104-147 166-205 (371)
30 PRK10660 tilS tRNA(Ile)-lysidi 87.2 4.7 0.0001 39.0 9.7 40 109-148 14-54 (436)
31 PF00875 DNA_photolyase: DNA p 86.6 3.8 8.3E-05 33.6 7.7 83 125-230 15-97 (165)
32 TIGR00591 phr2 photolyase PhrI 86.2 9.8 0.00021 36.7 11.3 85 124-230 38-122 (454)
33 PRK13820 argininosuccinate syn 84.7 17 0.00038 34.9 12.0 36 110-148 2-38 (394)
34 cd01990 Alpha_ANH_like_I This 84.4 11 0.00024 31.8 9.7 33 113-148 1-33 (202)
35 PF01012 ETF: Electron transfe 84.4 12 0.00026 30.6 9.7 86 112-230 1-99 (164)
36 cd01712 ThiI ThiI is required 83.8 22 0.00047 29.4 11.0 34 112-149 1-34 (177)
37 PRK03359 putative electron tra 83.3 5.1 0.00011 36.2 7.4 85 118-230 33-121 (256)
38 TIGR03556 photolyase_8HDF deox 82.0 12 0.00025 36.6 9.9 83 125-230 17-99 (471)
39 cd01986 Alpha_ANH_like Adenine 81.2 15 0.00033 27.6 8.4 33 113-149 1-33 (103)
40 cd01985 ETF The electron trans 81.0 23 0.00049 29.5 10.2 22 209-230 79-100 (181)
41 TIGR02765 crypto_DASH cryptoch 79.0 13 0.00027 35.6 8.9 89 125-230 17-105 (429)
42 cd01995 ExsB ExsB is a transcr 76.7 33 0.00072 28.0 9.8 33 112-148 1-33 (169)
43 PRK05253 sulfate adenylyltrans 75.8 31 0.00066 31.9 10.2 41 109-149 26-66 (301)
44 TIGR00032 argG argininosuccina 75.3 43 0.00093 32.2 11.3 33 112-148 1-33 (394)
45 cd01713 PAPS_reductase This do 75.3 38 0.00083 26.7 9.7 36 112-148 1-36 (173)
46 COG1606 ATP-utilizing enzymes 72.4 51 0.0011 30.1 10.4 89 110-230 17-122 (269)
47 PLN00200 argininosuccinate syn 71.4 1E+02 0.0022 29.8 13.1 37 109-148 4-40 (404)
48 PRK14057 epimerase; Provisiona 71.3 50 0.0011 29.9 10.2 39 190-230 185-223 (254)
49 PRK14665 mnmA tRNA-specific 2- 70.0 43 0.00093 31.7 9.9 35 109-147 4-38 (360)
50 PRK08745 ribulose-phosphate 3- 68.9 58 0.0013 28.7 9.9 39 190-230 163-201 (223)
51 cd01994 Alpha_ANH_like_IV This 68.8 74 0.0016 27.2 11.5 34 112-149 1-34 (194)
52 PF02844 GARS_N: Phosphoribosy 68.5 4.2 9.2E-05 31.7 2.3 34 205-239 47-84 (100)
53 PF13167 GTP-bdg_N: GTP-bindin 67.9 25 0.00055 27.1 6.5 51 181-231 6-67 (95)
54 PRK09590 celB cellobiose phosp 67.0 13 0.00029 28.9 4.9 53 186-242 19-72 (104)
55 TIGR00884 guaA_Cterm GMP synth 64.7 1.2E+02 0.0026 28.1 11.5 36 111-149 17-52 (311)
56 PF02310 B12-binding: B12 bind 63.4 23 0.0005 26.9 5.7 48 191-240 23-71 (121)
57 PRK00509 argininosuccinate syn 62.1 59 0.0013 31.3 9.2 36 110-148 2-37 (399)
58 PRK08091 ribulose-phosphate 3- 62.0 1.2E+02 0.0025 27.1 11.3 39 190-230 171-209 (228)
59 cd05565 PTS_IIB_lactose PTS_II 61.1 23 0.00049 27.4 5.1 51 186-242 18-69 (99)
60 KOG1650 Predicted K+/H+-antipo 61.0 38 0.00082 35.4 8.2 41 111-151 615-655 (769)
61 cd02071 MM_CoA_mut_B12_BD meth 60.3 27 0.00059 27.3 5.7 38 191-230 22-59 (122)
62 TIGR02039 CysD sulfate adenyly 59.4 1.4E+02 0.0031 27.5 11.0 40 110-149 19-58 (294)
63 cd02067 B12-binding B12 bindin 59.2 34 0.00073 26.3 5.9 43 191-235 22-65 (119)
64 PRK09722 allulose-6-phosphate 59.2 1.3E+02 0.0028 26.7 11.2 42 187-230 158-199 (229)
65 cd01997 GMP_synthase_C The C-t 58.4 1E+02 0.0023 28.3 9.9 35 112-149 1-35 (295)
66 cd01996 Alpha_ANH_like_III Thi 57.7 95 0.0021 24.7 9.9 33 112-147 3-35 (154)
67 PRK04527 argininosuccinate syn 57.6 1.3E+02 0.0027 29.2 10.6 35 110-148 2-36 (400)
68 PRK00919 GMP synthase subunit 56.6 78 0.0017 29.4 8.8 36 111-149 22-57 (307)
69 COG2102 Predicted ATPases of P 55.5 1.3E+02 0.0027 26.9 9.5 103 112-242 2-109 (223)
70 TIGR01501 MthylAspMutase methy 55.5 33 0.00071 28.0 5.5 49 192-242 25-77 (134)
71 PRK08349 hypothetical protein; 55.4 1.3E+02 0.0028 25.5 10.6 34 111-148 1-34 (198)
72 PRK01269 tRNA s(4)U8 sulfurtra 54.8 2.2E+02 0.0047 27.9 12.4 40 105-148 172-211 (482)
73 COG0301 ThiI Thiamine biosynth 54.8 1.5E+02 0.0033 28.5 10.6 102 103-233 169-291 (383)
74 PRK02261 methylaspartate mutas 53.6 48 0.001 26.9 6.2 42 191-234 26-68 (137)
75 PRK00143 mnmA tRNA-specific 2- 53.1 1.1E+02 0.0023 28.7 9.2 34 111-148 1-34 (346)
76 TIGR00640 acid_CoA_mut_C methy 53.1 32 0.00069 27.8 5.0 37 192-230 26-62 (132)
77 PF03746 LamB_YcsF: LamB/YcsF 52.8 97 0.0021 27.9 8.4 108 115-234 32-148 (242)
78 PRK14561 hypothetical protein; 52.4 1.5E+02 0.0032 25.3 9.3 32 111-147 1-32 (194)
79 cd02072 Glm_B12_BD B12 binding 51.8 43 0.00093 27.2 5.5 48 192-241 23-74 (128)
80 PRK05370 argininosuccinate syn 51.2 2.5E+02 0.0055 27.6 12.1 114 109-241 10-144 (447)
81 TIGR02855 spore_yabG sporulati 51.1 39 0.00084 31.1 5.7 46 184-230 116-162 (283)
82 PRK10674 deoxyribodipyrimidine 51.0 1.5E+02 0.0034 28.8 10.3 85 125-230 18-105 (472)
83 PF05582 Peptidase_U57: YabG p 50.9 36 0.00079 31.4 5.5 47 184-230 117-163 (287)
84 COG0036 Rpe Pentose-5-phosphat 50.6 1.8E+02 0.0039 25.9 9.7 31 198-230 169-199 (220)
85 TIGR02766 crypt_chrom_pln cryp 50.5 1.2E+02 0.0026 29.4 9.4 47 181-230 49-96 (475)
86 PRK14664 tRNA-specific 2-thiou 50.4 2.3E+02 0.0049 27.0 11.0 35 109-147 4-38 (362)
87 TIGR00853 pts-lac PTS system, 50.2 40 0.00086 25.6 4.9 51 186-242 21-72 (95)
88 TIGR00289 conserved hypothetic 50.1 1.8E+02 0.0039 25.7 11.0 93 111-231 1-95 (222)
89 TIGR00273 iron-sulfur cluster- 50.0 49 0.0011 32.2 6.6 60 170-230 38-97 (432)
90 PF02441 Flavoprotein: Flavopr 49.1 30 0.00066 27.3 4.3 34 111-145 1-34 (129)
91 cd03364 TOPRIM_DnaG_primases T 49.0 49 0.0011 23.6 5.0 34 110-143 43-76 (79)
92 TIGR00486 YbgI_SA1388 dinuclea 47.9 35 0.00076 30.3 4.9 33 106-145 32-64 (249)
93 PRK01565 thiamine biosynthesis 47.8 2.5E+02 0.0055 26.7 12.7 39 106-148 172-210 (394)
94 TIGR00420 trmU tRNA (5-methyla 46.9 2.5E+02 0.0053 26.4 10.6 33 111-147 1-33 (352)
95 PRK12563 sulfate adenylyltrans 46.8 1.9E+02 0.0042 27.0 9.7 39 110-148 37-75 (312)
96 cd01714 ETF_beta The electron 46.2 1.5E+02 0.0032 25.4 8.4 32 115-146 29-60 (202)
97 PRK08299 isocitrate dehydrogen 45.5 33 0.00072 33.2 4.6 26 121-146 185-210 (402)
98 COG0415 PhrB Deoxyribodipyrimi 44.9 1.2E+02 0.0027 29.8 8.4 47 181-230 53-99 (461)
99 PF02568 ThiI: Thiamine biosyn 43.1 2.2E+02 0.0048 24.6 9.0 38 109-150 2-39 (197)
100 PRK06029 3-octaprenyl-4-hydrox 42.8 47 0.001 28.5 4.7 34 111-144 2-35 (185)
101 PRK11106 queuosine biosynthesi 42.1 2.3E+02 0.0049 25.1 9.1 34 111-148 2-35 (231)
102 COG1597 LCB5 Sphingosine kinas 41.6 64 0.0014 29.6 5.7 49 182-230 19-67 (301)
103 PF13662 Toprim_4: Toprim doma 41.0 48 0.001 23.8 3.9 34 110-143 46-79 (81)
104 PRK12388 fructose-1,6-bisphosp 39.6 2.2E+02 0.0048 26.8 8.8 31 194-226 175-205 (321)
105 TIGR02113 coaC_strep phosphopa 39.3 53 0.0012 27.8 4.5 34 111-145 1-34 (177)
106 PF01784 NIF3: NIF3 (NGG1p int 38.9 33 0.00071 30.3 3.3 38 101-145 23-60 (241)
107 cd08550 GlyDH-like Glycerol_de 38.7 73 0.0016 29.5 5.7 44 186-229 39-86 (349)
108 PF13362 Toprim_3: Toprim doma 38.6 76 0.0016 23.4 4.8 37 108-144 39-77 (96)
109 COG0041 PurE Phosphoribosylcar 38.4 1.2E+02 0.0025 25.8 6.2 42 189-230 22-66 (162)
110 PRK13010 purU formyltetrahydro 38.3 2.1E+02 0.0045 26.2 8.5 84 109-230 92-178 (289)
111 PRK00074 guaA GMP synthase; Re 38.2 2E+02 0.0043 28.5 8.9 36 110-148 215-250 (511)
112 TIGR00364 exsB protein. This p 38.1 2.2E+02 0.0047 23.9 8.1 31 113-147 1-31 (201)
113 PRK11914 diacylglycerol kinase 37.9 65 0.0014 29.1 5.1 38 191-228 34-71 (306)
114 PRK07313 phosphopantothenoylcy 37.4 71 0.0015 27.2 5.0 34 111-145 2-35 (182)
115 TIGR02852 spore_dpaB dipicolin 36.7 67 0.0015 27.7 4.7 34 111-145 1-35 (187)
116 TIGR00930 2a30 K-Cl cotranspor 36.1 5.2E+02 0.011 27.8 12.1 37 112-149 577-613 (953)
117 TIGR00646 MG010 DNA primase-re 35.9 1.6E+02 0.0035 26.1 7.1 35 110-144 154-188 (218)
118 cd01998 tRNA_Me_trans tRNA met 35.4 3.7E+02 0.0081 25.0 10.3 33 112-148 1-33 (349)
119 TIGR00290 MJ0570_dom MJ0570-re 35.2 3.2E+02 0.0069 24.2 13.6 116 112-234 2-147 (223)
120 PF12683 DUF3798: Protein of u 34.8 1.1E+02 0.0025 28.1 6.0 92 112-230 4-95 (275)
121 TIGR02370 pyl_corrinoid methyl 34.1 99 0.0021 26.4 5.4 45 191-237 107-152 (197)
122 PRK10799 metal-binding protein 33.8 55 0.0012 29.0 3.9 32 198-230 164-195 (247)
123 PF02878 PGM_PMM_I: Phosphoglu 33.6 51 0.0011 26.2 3.4 41 109-149 39-79 (137)
124 PRK08576 hypothetical protein; 33.6 4.1E+02 0.0089 26.0 10.1 33 111-147 235-267 (438)
125 cd01999 Argininosuccinate_Synt 33.4 3.5E+02 0.0075 25.9 9.4 33 113-148 1-33 (385)
126 TIGR02194 GlrX_NrdH Glutaredox 32.7 1.7E+02 0.0036 20.3 5.6 50 192-241 19-72 (72)
127 COG0159 TrpA Tryptophan syntha 32.6 1.2E+02 0.0026 27.7 5.9 55 185-241 111-167 (265)
128 cd05564 PTS_IIB_chitobiose_lic 32.4 1.2E+02 0.0026 22.9 5.0 50 186-241 17-67 (96)
129 cd02070 corrinoid_protein_B12- 32.4 1.1E+02 0.0023 26.1 5.3 44 191-236 105-149 (201)
130 cd01029 TOPRIM_primases TOPRIM 31.9 1.3E+02 0.0029 21.0 5.0 32 110-141 43-74 (79)
131 PRK12569 hypothetical protein; 31.4 1.3E+02 0.0028 27.3 5.8 100 125-236 47-155 (245)
132 TIGR00330 glpX fructose-1,6-bi 31.4 3.7E+02 0.0079 25.3 8.8 31 194-226 175-205 (321)
133 TIGR03573 WbuX N-acetyl sugar 30.9 4.4E+02 0.0095 24.5 10.2 35 111-148 60-94 (343)
134 PRK05406 LamB/YcsF family prot 30.6 1.4E+02 0.003 27.1 5.8 100 125-236 44-152 (246)
135 COG1066 Sms Predicted ATP-depe 30.5 3.6E+02 0.0079 26.6 9.0 84 109-230 92-177 (456)
136 PRK13337 putative lipid kinase 30.2 1.6E+02 0.0034 26.6 6.3 44 187-230 23-66 (304)
137 COG0655 WrbA Multimeric flavod 30.0 1.8E+02 0.004 24.7 6.4 58 185-242 20-99 (207)
138 COG0299 PurN Folate-dependent 30.0 3.8E+02 0.0083 23.5 9.8 84 111-230 1-88 (200)
139 PRK05920 aromatic acid decarbo 29.6 1.2E+02 0.0026 26.4 5.2 36 109-145 2-37 (204)
140 PF06925 MGDG_synth: Monogalac 29.4 88 0.0019 25.6 4.2 28 122-149 3-30 (169)
141 PF02601 Exonuc_VII_L: Exonucl 29.2 1E+02 0.0022 28.1 4.9 34 201-234 48-88 (319)
142 TIGR00655 PurU formyltetrahydr 29.2 4.1E+02 0.0089 24.2 8.8 84 109-230 83-169 (280)
143 TIGR00177 molyb_syn molybdenum 29.2 1.2E+02 0.0026 24.4 4.8 36 192-228 36-73 (144)
144 TIGR01162 purE phosphoribosyla 29.0 1.7E+02 0.0037 24.6 5.8 45 186-230 15-62 (156)
145 PRK13398 3-deoxy-7-phosphohept 28.7 4.4E+02 0.0096 23.8 11.3 93 121-241 38-131 (266)
146 PRK06027 purU formyltetrahydro 28.4 4.5E+02 0.0098 23.9 9.0 121 69-230 44-174 (286)
147 PF04007 DUF354: Protein of un 28.3 2E+02 0.0043 27.0 6.8 47 184-234 15-61 (335)
148 cd02069 methionine_synthase_B1 28.2 1.4E+02 0.003 26.0 5.4 46 192-239 112-158 (213)
149 cd01516 FBPase_glpX Bacterial 28.1 4.6E+02 0.0099 24.6 8.9 31 194-226 175-205 (309)
150 PRK13055 putative lipid kinase 28.0 1.8E+02 0.0038 26.8 6.4 50 185-234 22-72 (334)
151 COG0151 PurD Phosphoribosylami 27.9 47 0.001 32.4 2.5 32 207-239 50-85 (428)
152 PF13155 Toprim_2: Toprim-like 27.6 1.5E+02 0.0033 21.5 4.8 30 109-138 46-75 (96)
153 PF03808 Glyco_tran_WecB: Glyc 27.5 1.8E+02 0.0038 24.2 5.7 22 209-230 89-110 (172)
154 PRK13011 formyltetrahydrofolat 27.4 4.4E+02 0.0096 24.0 8.8 121 69-230 45-174 (286)
155 PRK10329 glutaredoxin-like pro 27.1 2.3E+02 0.005 20.5 5.7 50 192-241 21-73 (81)
156 PRK08883 ribulose-phosphate 3- 26.8 4.3E+02 0.0093 23.1 9.7 43 186-230 155-197 (220)
157 PF00731 AIRC: AIR carboxylase 26.4 1.5E+02 0.0033 24.7 5.1 44 187-230 18-64 (150)
158 COG1440 CelA Phosphotransferas 26.3 1.5E+02 0.0033 23.2 4.7 48 190-243 23-71 (102)
159 cd06317 PBP1_ABC_sugar_binding 26.2 3.9E+02 0.0085 22.4 9.9 33 198-230 187-221 (275)
160 cd08170 GlyDH Glycerol dehydro 26.1 1.4E+02 0.0031 27.5 5.4 43 185-227 38-83 (351)
161 PRK10638 glutaredoxin 3; Provi 26.0 2.5E+02 0.0053 20.0 5.6 55 189-243 19-75 (83)
162 KOG3191 Predicted N6-DNA-methy 26.0 4.6E+02 0.01 23.1 9.4 50 179-230 145-194 (209)
163 cd06360 PBP1_alkylbenzenes_lik 25.6 3E+02 0.0064 24.2 7.2 51 190-241 156-209 (336)
164 cd00858 GlyRS_anticodon GlyRS 25.5 2.3E+02 0.0049 21.9 5.7 37 191-230 50-87 (121)
165 PRK00109 Holliday junction res 25.2 62 0.0014 26.3 2.5 21 210-230 43-63 (138)
166 CHL00200 trpA tryptophan synth 24.1 2.1E+02 0.0045 25.9 5.9 25 214-238 137-161 (263)
167 PHA02031 putative DnaG-like pr 24.0 1.3E+02 0.0028 27.6 4.4 36 110-145 206-241 (266)
168 PF03652 UPF0081: Uncharacteri 23.9 59 0.0013 26.3 2.1 23 208-230 38-60 (135)
169 COG0761 lytB 4-Hydroxy-3-methy 23.8 1.9E+02 0.0041 26.9 5.5 61 181-243 173-236 (294)
170 PRK08305 spoVFB dipicolinate s 23.6 1.7E+02 0.0036 25.5 5.0 36 109-145 4-40 (196)
171 smart00852 MoCF_biosynth Proba 23.6 2.2E+02 0.0047 22.3 5.3 35 192-227 27-63 (135)
172 PRK09190 hypothetical protein; 23.5 3.6E+02 0.0079 23.8 7.1 57 178-242 92-150 (220)
173 COG0137 ArgG Argininosuccinate 23.4 7E+02 0.015 24.3 12.6 105 109-231 3-122 (403)
174 cd06361 PBP1_GPC6A_like Ligand 23.2 6.3E+02 0.014 23.7 10.5 96 109-230 171-267 (403)
175 TIGR00147 lipid kinase, YegS/R 23.1 2.4E+02 0.0053 25.0 6.2 48 187-234 23-70 (293)
176 COG1570 XseA Exonuclease VII, 22.8 1.7E+02 0.0037 28.7 5.3 33 202-234 170-206 (440)
177 PRK13054 lipid kinase; Reviewe 22.8 2.1E+02 0.0046 25.7 5.8 43 191-234 26-69 (300)
178 PLN02828 formyltetrahydrofolat 22.6 5.9E+02 0.013 23.2 9.7 37 109-146 69-105 (268)
179 smart00493 TOPRIM topoisomeras 22.3 1.3E+02 0.0028 20.8 3.4 25 111-135 48-72 (76)
180 cd00338 Ser_Recombinase Serine 22.1 3.3E+02 0.0071 20.7 6.1 45 186-230 21-74 (137)
181 PF00834 Ribul_P_3_epim: Ribul 21.9 43 0.00094 29.0 1.0 43 186-230 154-196 (201)
182 TIGR00216 ispH_lytB (E)-4-hydr 21.7 1.8E+02 0.004 26.6 5.1 34 208-243 197-232 (280)
183 TIGR03702 lip_kinase_YegS lipi 21.6 2.5E+02 0.0053 25.2 5.9 36 192-228 23-59 (293)
184 TIGR00521 coaBC_dfp phosphopan 21.5 1.8E+02 0.0039 27.8 5.2 34 110-144 3-36 (390)
185 cd01715 ETF_alpha The electron 21.4 1.4E+02 0.0031 24.4 4.0 23 208-230 70-92 (168)
186 cd06348 PBP1_ABC_ligand_bindin 21.4 4.1E+02 0.0089 23.6 7.4 54 187-241 156-212 (344)
187 PF07476 MAAL_C: Methylasparta 21.3 2.7E+02 0.0058 25.2 5.8 54 183-236 123-177 (248)
188 PLN02205 alpha,alpha-trehalose 21.2 1E+03 0.022 25.4 12.2 105 110-234 338-448 (854)
189 COG0327 Uncharacterized conser 21.1 1.7E+02 0.0037 26.2 4.6 23 101-123 27-49 (250)
190 PF12965 DUF3854: Domain of un 21.1 2.8E+02 0.006 22.3 5.5 38 109-146 67-110 (130)
191 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.0 1.4E+02 0.0031 22.6 3.7 40 109-149 45-84 (126)
192 PF00532 Peripla_BP_1: Peripla 21.0 3.3E+02 0.0073 24.0 6.6 56 185-240 20-75 (279)
193 TIGR02181 GRX_bact Glutaredoxi 20.9 3E+02 0.0064 19.1 5.9 53 191-243 18-72 (79)
194 COG1139 Uncharacterized conser 20.6 2.9E+02 0.0064 27.2 6.4 52 178-230 60-111 (459)
195 cd03770 SR_TndX_transposase Se 20.6 3.9E+02 0.0085 21.1 6.3 42 187-228 26-75 (140)
196 PF03358 FMN_red: NADPH-depend 20.5 1.4E+02 0.003 23.6 3.6 56 184-241 19-93 (152)
197 cd08185 Fe-ADH1 Iron-containin 20.3 1.9E+02 0.0042 27.0 5.1 41 189-229 47-92 (380)
198 TIGR03156 GTP_HflX GTP-binding 20.2 3E+02 0.0065 25.7 6.3 47 185-231 19-76 (351)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.84 E-value=3.3e-20 Score=149.44 Aligned_cols=118 Identities=31% Similarity=0.522 Sum_probs=96.3
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+||||+|+|+.|++||+||++++...+++|++|||+++.....+..+ .......+.++.++.++++|+++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999989999999999976532221111 01233445556667888899999999
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL 236 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR 236 (244)
|...+++++..++.|+++++.|+++|++.++|+||||+| ++++.|
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~ 119 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSM 119 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceee
Confidence 988899999888888667899999999999999999999 788855
No 2
>PRK09982 universal stress protein UspD; Provisional
Probab=99.80 E-value=7.3e-19 Score=142.73 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=89.1
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
.|+|||||+|+|+.|.+|+++|+.+|+..+++|+++||+++..... ....+ .. .+...+..++.+++.|+++
T Consensus 2 ~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~-~~~~~----~~---~~~~~~~~~~~~~~~l~~~ 73 (142)
T PRK09982 2 AYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELY-PGIYF----PA---TEDILQLLKNKSDNKLYKL 73 (142)
T ss_pred CceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhc-hhhhc----cc---hHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999997643211 00000 01 1223344455666677777
Q ss_pred HhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCChHHHHh
Q 026046 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQK 239 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~GlrRf~~ 239 (244)
.+.+.. ..++..+..|+| ++.|+++|+++++||||||+|++|+++|-+
T Consensus 74 ~~~~~~--~~~~~~v~~G~p-~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~ 121 (142)
T PRK09982 74 TKNIQW--PKTKLRIERGEM-PETLLEIMQKEQCDLLVCGHHHSFINRLMP 121 (142)
T ss_pred HHhcCC--CcceEEEEecCH-HHHHHHHHHHcCCCEEEEeCChhHHHHHHH
Confidence 665542 346667777876 799999999999999999988888877644
No 3
>PRK15456 universal stress protein UspG; Provisional
Probab=99.77 E-value=7.3e-18 Score=135.96 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCEEEEeEcCCH--hHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 026046 110 EDIIYVAVGKSQ--SSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (244)
Q Consensus 110 ~rkILVAVDgSe--~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~ 187 (244)
++|||||+|||+ .+.+|++||..+|.. .++|+++||+++...... ... . .+.+.+.+..++.+++.|++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~~--~~~-----~-~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLSL--HRF-----A-ADVRRFEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCcccccc--ccc-----c-cchhhHHHHHHHHHHHHHHH
Confidence 799999999994 899999999999976 469999999986532110 000 0 11233445556677777888
Q ss_pred HHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCChHH
Q 026046 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRL 236 (244)
Q Consensus 188 ~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~GlrR 236 (244)
+.+.+...+++++..+..|++ +++|+++|+++++||||||+|+.++.+
T Consensus 73 ~~~~~~~~~~~v~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~g~~~~~ 120 (142)
T PRK15456 73 MVSHFTIDPSRIKQHVRFGSV-RDEVNELAEELGADVVVIGSRNPSIST 120 (142)
T ss_pred HHHHhCCCCcceEEEEcCCCh-HHHHHHHHhhcCCCEEEEcCCCCCccc
Confidence 877765567888888888876 699999999999999999999545643
No 4
>PRK15005 universal stress protein F; Provisional
Probab=99.77 E-value=7.4e-18 Score=135.21 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=87.2
Q ss_pred CCEEEEeEcCCHh--HHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 026046 110 EDIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (244)
Q Consensus 110 ~rkILVAVDgSe~--S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~ 187 (244)
+++||||+|+|+. +++|++||..+|++.+++|+++||+++...... .+.... ..... .+..++.+++.|++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~-~~~~~~--~~~~~----~~~~~~~~~~~l~~ 74 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYAS-LGLAYS--AELPA----MDDLKAEAKSQLEE 74 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCccccc-cccccc--ccchH----HHHHHHHHHHHHHH
Confidence 6899999999997 589999999999999999999999986432111 111000 00011 12233455566677
Q ss_pred HHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCChHH
Q 026046 188 FLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRL 236 (244)
Q Consensus 188 ~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~GlrR 236 (244)
+.+.+...+++++..+..|++ ++.|+++|+++++||||||+|++++.+
T Consensus 75 ~~~~~~~~~~~~~~~v~~G~p-~~~I~~~a~~~~~DLIV~Gs~~~~~~~ 122 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVEEGSP-KDRILELAKKIPADMIIIASHRPDITT 122 (144)
T ss_pred HHHHhCCCCCceEEEEeCCCH-HHHHHHHHHHcCCCEEEEeCCCCCchh
Confidence 666666667788888888876 699999999999999999999767754
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.75 E-value=2.3e-17 Score=132.99 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=83.0
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
.++|||||+|+|+.+..||+||+.+|+..+++|++|||.++.... + .+.. ......+.+...+..++.++++
T Consensus 2 ~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~~~l~~~ 73 (144)
T PRK15118 2 AYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL-Y-TGLI------DVNLGDMQKRISEETHHALTEL 73 (144)
T ss_pred CceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh-h-hhhh------hcchHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998889999999995432111 0 0110 0011222333334444445443
Q ss_pred HhHhhcCCCcEEE-EEEEcCCHHHHHHHHhhhCCCcEEEECCCCCChHHHHhhh
Q 026046 189 LDTCSQSKVMVDT-VLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLA 241 (244)
Q Consensus 189 ~~~~~~~gV~ve~-vvveGd~vaeaIle~A~e~~aDLIVmGS~r~GlrRf~~~~ 241 (244)
+...++++.. ++..|++ +++|+++|+++++||||||+|++++++|.|.+
T Consensus 74 ---~~~~~~~~~~~~~~~G~p-~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva 123 (144)
T PRK15118 74 ---STNAGYPITETLSGSGDL-GQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSA 123 (144)
T ss_pred ---HHhCCCCceEEEEEecCH-HHHHHHHHHHhCCCEEEEeCcccHHHHHHHHH
Confidence 3445777644 4446766 79999999999999999999965566665554
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.68 E-value=1e-15 Score=122.71 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=86.8
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
++++||||+|+|+.+..||++|+.+|+..+++|+++|+++.+.... + ......+.+.+..+++.+++|+++
T Consensus 2 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~l~~~ 72 (142)
T PRK10116 2 SYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYN---Q------FAAPMLEDLRSVMQEETQSFLDKL 72 (142)
T ss_pred CCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccch---h------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999998899999999987643211 1 011222344444445555556554
Q ss_pred HhHhhcCCCcEE-EEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHh
Q 026046 189 LDTCSQSKVMVD-TVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQK 239 (244)
Q Consensus 189 ~~~~~~~gV~ve-~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~ 239 (244)
. ...+++.. .++..|++ .+.|+++|++.++||||||+| ++++.+|-+
T Consensus 73 ~---~~~~~~~~~~~~~~G~~-~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s 121 (142)
T PRK10116 73 I---QDADYPIEKTFIAYGEL-SEHILEVCRKHHFDLVICGNHNHSFFSRASC 121 (142)
T ss_pred H---HhcCCCeEEEEEecCCH-HHHHHHHHHHhCCCEEEEcCCcchHHHHHHH
Confidence 3 34567654 34556766 799999999999999999999 788887654
No 7
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.63 E-value=6.7e-15 Score=115.33 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=85.1
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+||||+|+++.+..+|++|..+|...+++|+++||++++..... .. .....+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~------------~~----~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP------------SQ----LEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc------------ch----hHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988999999999986532110 00 011234556777788888
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL 234 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl 234 (244)
+...|++++..+..++.++++|+++++++++|+||||++ ++++
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCc
Confidence 888899988777665556899999999999999999999 6665
No 8
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.61 E-value=7.1e-15 Score=113.62 Aligned_cols=116 Identities=27% Similarity=0.264 Sum_probs=76.4
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~ 189 (244)
+++||||+|+++.+..|++||+.++...+++|++|||++....... .......................
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 70 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF-----------SAAEDEESEEEAEEEEQARQAEA 70 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc-----------ccccccccccccchhhhhhhHHH
Confidence 6999999999999999999999999999999999999987642110 00000000000011000001000
Q ss_pred hHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL 236 (244)
Q Consensus 190 ~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR 236 (244)
..+...+.......+..++++++|++++++.++|+||||++ ++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~ 118 (140)
T PF00582_consen 71 EEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLER 118 (140)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTT
T ss_pred HHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccC
Confidence 22223344444444555566899999999999999999999 577765
No 9
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.61 E-value=1.2e-14 Score=113.89 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=76.7
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+||||+|+|+.++++++||+.++...+++|+++||.++... . .. +..++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------~-----~~------------~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN------R-----LS------------EAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc------c-----CC------------HHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999875421 0 00 1123344555555
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHH
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLH 237 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf 237 (244)
+...++++ .++.+++++++|+++++++++|+||||+| ++++.|+
T Consensus 58 ~~~~~~~~--~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~ 102 (124)
T cd01987 58 AEELGAEV--VTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWREL 102 (124)
T ss_pred HHHcCCEE--EEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHH
Confidence 55555544 34456666899999999999999999999 6777664
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.58 E-value=2.2e-14 Score=128.81 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=90.3
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
.+++||||+|+|+.+..|++||+.+|+..+++|++|||+++... +.+ +. ..........+...+..++.|+++
T Consensus 2 ~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~~~ 74 (305)
T PRK11175 2 KYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EMT-TL-----LSPDEREAMRQGVISQRTAWIREQ 74 (305)
T ss_pred CcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hhh-cc-----cchhHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999865422 111 11 111222223333344566677887
Q ss_pred HhHhhcCCCcEEEEEEE-cCCHHHHHHHHhhhCCCcEEEECCC-CCChHHH
Q 026046 189 LDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLH 237 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvve-Gd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf 237 (244)
...+...+++++..+.. |++ .++|+++|+++++||||||+| .+++.++
T Consensus 75 ~~~~~~~~~~~~~~v~~~g~~-~~~i~~~a~~~~~DLiV~G~~~~~~~~~~ 124 (305)
T PRK11175 75 AKPYLDAGIPIEIKVVWHNRP-FEAIIQEVIAGGHDLVVKMTHQHDKLESV 124 (305)
T ss_pred HHHHhhcCCceEEEEecCCCc-HHHHHHHHHhcCCCEEEEeCCCCcHHHhh
Confidence 77777778999887764 555 799999999999999999999 6777654
No 11
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.56 E-value=8.5e-14 Score=130.29 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=76.7
Q ss_pred CCCCEEEEeEcCCHhHHHHHHHHHHHhcCC--CCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 026046 108 QEEDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLL 185 (244)
Q Consensus 108 ~~~rkILVAVDgSe~S~~AL~~Al~lA~~~--ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lL 185 (244)
..++|||||+|||+.|++|+++|+++|+.. +++|++|||++...... . .+.. .+..++++
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~---~--------~~~~-------~~~~eell 64 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP---E--------GQDE-------LAAAEELL 64 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc---c--------hhHH-------HHHHHHHH
Confidence 478999999999999999999999999874 69999999998643110 0 0111 11222333
Q ss_pred HHHHhHhh------cCCCcEEEEEEEc-------CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 186 QKFLDTCS------QSKVMVDTVLIES-------DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 186 e~~~~~~~------~~gV~ve~vvveG-------d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+++.+.+. ..|++++..++.+ +.++++|+++|+++++|+||||-.
T Consensus 65 e~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 65 ERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 33333332 2689999888762 345899999999999999999987
No 12
>PRK11175 universal stress protein UspE; Provisional
Probab=99.51 E-value=1.4e-13 Score=123.60 Aligned_cols=117 Identities=17% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCCEEEEeEcCCHh-------HHHHHHHHHHHhcCC-CCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQS-------SMDALSWTLRHAVNP-STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGK 180 (244)
Q Consensus 109 ~~rkILVAVDgSe~-------S~~AL~~Al~lA~~~-ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~ 180 (244)
.+++||||+|+|+. +..||++|+.++... +++|+++||++....... ..++. . ....+.+..++.
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~--~~~~~--~---~~~~~~~~~~~~ 223 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIA--IELPE--F---DPSVYNDAIRGQ 223 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhcc--ccccc--c---chhhHHHHHHHH
Confidence 46899999999875 368999999999887 999999999875432110 00110 0 112223333334
Q ss_pred HHHHHHHHHhHhhcCCCcEE-EEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046 181 RRQLLQKFLDTCSQSKVMVD-TVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL 236 (244)
Q Consensus 181 a~~lLe~~~~~~~~~gV~ve-~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR 236 (244)
.++.++++.+. .++... ..+..|++ +++|+++|+++++||||||+| ++++.+
T Consensus 224 ~~~~l~~~~~~---~~~~~~~~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~~~~~~~~ 277 (305)
T PRK11175 224 HLLAMKALRQK---FGIDEEQTHVEEGLP-EEVIPDLAEHLDAELVILGTVGRTGLSA 277 (305)
T ss_pred HHHHHHHHHHH---hCCChhheeeccCCH-HHHHHHHHHHhCCCEEEECCCccCCCcc
Confidence 44445554433 355543 34556765 799999999999999999999 788755
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.51 E-value=5.8e-13 Score=102.08 Aligned_cols=106 Identities=30% Similarity=0.391 Sum_probs=86.4
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+||||+|+++.+..+++||..+|...+++|+++||.++..... . ...+....+.++.|+++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~------------~----~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSA------------A----ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcc------------h----hHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999899999999987643211 0 12223345667788888888
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL 234 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl 234 (244)
+...++++...+..|.+ +++|++++++.++|+||||++ ++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~~~~~ 107 (130)
T cd00293 65 LAEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRGRSGL 107 (130)
T ss_pred HhcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCCCCcc
Confidence 77778998888888877 799999999999999999999 5555
No 14
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.33 E-value=5.5e-11 Score=94.42 Aligned_cols=128 Identities=21% Similarity=0.174 Sum_probs=94.7
Q ss_pred CCCEEEEeEc-CCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVG-KSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (244)
Q Consensus 109 ~~rkILVAVD-gSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~ 187 (244)
.+++||+++| +++.+..|++++..++...+..+.++||.+............ ................++.++.
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVAL-----ADAPIPLSEEELEEEAEELLAE 78 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccccccccc-----ccchhhhhHHHHHHHHHHHHHH
Confidence 6799999999 999999999999999998999999999997654222111100 0000111122334556677777
Q ss_pred HHhHhhcCCCc-EEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH--HHhhh
Q 026046 188 FLDTCSQSKVM-VDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL--HQKLA 241 (244)
Q Consensus 188 ~~~~~~~~gV~-ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR--f~~~~ 241 (244)
+.+.....+++ ++..+..|.+..+.|++++++.++|+||||++ ++++++ |.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs 136 (154)
T COG0589 79 AKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVA 136 (154)
T ss_pred HHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhH
Confidence 77778778888 47888889987799999999999999999999 788876 44433
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=98.77 E-value=6.8e-08 Score=100.09 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
...+|||||++++.+.+++++|.++|.+.++++++|||..+... . ...+ .++.+.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~-----~------~~~~------------~~~~l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLH-----R------LPEK------------KRRAILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcC-----c------CCHH------------HHHHHHHH
Confidence 56789999999999999999999999999999999999865310 0 0111 11122333
Q ss_pred HhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh
Q 026046 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL 234 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl 234 (244)
.++++..|.++ +.+.|++++++|+++|++++++.||||.+ ++++
T Consensus 306 ~~lA~~lGa~~--~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~ 350 (895)
T PRK10490 306 LRLAQELGAET--ATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW 350 (895)
T ss_pred HHHHHHcCCEE--EEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence 34666667664 56678888999999999999999999998 5544
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.57 E-value=5.5e-07 Score=91.30 Aligned_cols=102 Identities=22% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
...+|||||++++.+.+.+++|.++|.+.+++++++||..+..... . +..++.|...
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~------------~-----------~~~~~~l~~~ 303 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL------------S-----------EKEARRLHEN 303 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc------------c-----------HHHHHHHHHH
Confidence 5589999999999999999999999999999999999986643100 0 1223346666
Q ss_pred HhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChH
Q 026046 189 LDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLR 235 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Glr 235 (244)
.++++..|-+ .+.+.|++++++|+++|+.+++..||||.+ ++..+
T Consensus 304 ~~Lae~lGae--~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~ 349 (890)
T COG2205 304 LRLAEELGAE--IVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWR 349 (890)
T ss_pred HHHHHHhCCe--EEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHH
Confidence 6777765644 466778889999999999999999999999 55443
No 17
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=97.06 E-value=0.0099 Score=50.01 Aligned_cols=94 Identities=14% Similarity=0.157 Sum_probs=63.4
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+|+|++.|...|.-++.++.+.+...+.++.++||-.... ... .+..+.+...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~---------------~~~------------~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLR---------------PES------------DEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC---------------hhH------------HHHHHHHHHH
Confidence 5899999999999999998887765567899999854321 000 1112334445
Q ss_pred hhcCCCcEEEEEEEc--------CCHH--------HHHHHHhhhCCCcEEEECCCCC
Q 026046 192 CSQSKVMVDTVLIES--------DLVA--------KAILDLIPVLNIRKLVVGTTKS 232 (244)
Q Consensus 192 ~~~~gV~ve~vvveG--------d~va--------eaIle~A~e~~aDLIVmGS~r~ 232 (244)
|+..|+++..+-+.. .+.. ..+.+.|++++++.|+.|.+..
T Consensus 54 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~ 110 (189)
T TIGR02432 54 CKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHAD 110 (189)
T ss_pred HHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccH
Confidence 556677776543321 1122 4677899999999999999843
No 18
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.05 E-value=0.0024 Score=46.93 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=28.2
Q ss_pred EEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEE
Q 026046 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (244)
Q Consensus 113 ILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHV 146 (244)
||||++++..|..++.|+.+++ +.+.+++++|+
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 6899999999999999999887 45677777775
No 19
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.43 E-value=0.042 Score=46.26 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=57.1
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
||+||+.|...|.-.|.....+....+-++.++||...... .... . .+...+.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-------------~s~~-----------~---~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-------------ESDE-----------E---AEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-------------CHHH-----------H---HHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-------------ccch-----------h---HHHHHHH
Confidence 79999999999999999988888777889999999864320 0111 0 1233345
Q ss_pred hhcCCCcEEEEEEE-----cCCH--------HHHHHHHhhhCCCcEEEECCCC
Q 026046 192 CSQSKVMVDTVLIE-----SDLV--------AKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 192 ~~~~gV~ve~vvve-----Gd~v--------aeaIle~A~e~~aDLIVmGS~r 231 (244)
|+..+++.....+. +... -+.+.++|.+++++.|++|.|.
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 54 CEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 66667877655443 1121 1355678999999999999883
No 20
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.25 E-value=0.057 Score=44.97 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
+|+|++.|...|.-++.++.+.....+.++.++|+-.... .. ..+.++.+.+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~---------------~~------------~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR---------------PE------------SDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC---------------ch------------HHHHHHHHHHH
Confidence 6899999999999999998877654467899999853211 00 01112333445
Q ss_pred hhcCCCcEEEEEE-Ec----CCH--------HHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 192 CSQSKVMVDTVLI-ES----DLV--------AKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 192 ~~~~gV~ve~vvv-eG----d~v--------aeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
|...|++...+.. .. ... -..+.++|++++++.|+.|.+...+
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 54 CAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred HHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 5556777765411 11 110 1456688999999999999985443
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.80 E-value=0.31 Score=50.91 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=67.6
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCC--CCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSP--LGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~--~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe 186 (244)
...+|.+..=|.+..++||.+|.+++..++..++++|..+........ ....+.+..-++. ....+++++.-++.++
T Consensus 629 ~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~D~~~~~ 707 (832)
T PLN03159 629 VSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTV-ETDGKKERQLDEEYIN 707 (832)
T ss_pred cceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccc-cccchhHHHHHHHHHH
Confidence 455999999889999999999999999999999999998653211100 0000000000000 0000112223355677
Q ss_pred HHHhHhhc-CCCcEEEEEEEcCCHHHHHHHHhhh--CCCcEEEECCC
Q 026046 187 KFLDTCSQ-SKVMVDTVLIESDLVAKAILDLIPV--LNIRKLVVGTT 230 (244)
Q Consensus 187 ~~~~~~~~-~gV~ve~vvveGd~vaeaIle~A~e--~~aDLIVmGS~ 230 (244)
+++..... ..+.+...++.+. .+++...++ .++||+|||.+
T Consensus 708 ef~~~~~~~~~v~y~E~~V~~~---~e~~~~l~~~~~~ydL~iVGr~ 751 (832)
T PLN03159 708 EFRARNAGNESIVYTEKVVSNG---EETVAAIRSMDSAHDLFIVGRG 751 (832)
T ss_pred HHHHhcCCCCceEEEEEecCCH---HHHHHHHHHhhccCcEEEEecC
Confidence 77766642 3466665555332 233333332 24899999976
No 22
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.50 E-value=0.38 Score=39.70 Aligned_cols=38 Identities=16% Similarity=-0.012 Sum_probs=30.1
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCC--CCeEEEEEEecC
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQ 149 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~--ga~L~LLHVi~~ 149 (244)
+|+|++.|...|.-++.++.+..... +-+++++|+...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999998877765433 568889998643
No 23
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=93.59 E-value=1.2 Score=39.78 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=59.2
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCC--CCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNP--STLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~--ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe 186 (244)
+..+|+||+.|...|.-.|.++..+.... +-+|..+|+-.... +. ..+
T Consensus 28 ~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~------~~------~~~------------------ 77 (258)
T PRK10696 28 EGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQP------GF------PEH------------------ 77 (258)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC------CC------CHH------------------
Confidence 56799999999999998888877665432 34788888753211 10 000
Q ss_pred HHHhHhhcCCCcEEEEEEE-----------cCC--------HHHHHHHHhhhCCCcEEEECCCC
Q 026046 187 KFLDTCSQSKVMVDTVLIE-----------SDL--------VAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvve-----------Gd~--------vaeaIle~A~e~~aDLIVmGS~r 231 (244)
...+.|+..|+++..+-.. +.. .-..+.++|++.++|.|++|.|.
T Consensus 78 ~~~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~ 141 (258)
T PRK10696 78 VLPEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHR 141 (258)
T ss_pred HHHHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCch
Confidence 0133566667776543221 111 11355688899999999999884
No 24
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.52 E-value=1.2 Score=39.99 Aligned_cols=39 Identities=23% Similarity=0.142 Sum_probs=32.4
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCC
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~ 150 (244)
..+|+||+.|.+.|.-+|....++... -.+.++||....
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~ 59 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGL 59 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCC
Confidence 489999999999999999887766543 789999997654
No 25
>PRK12342 hypothetical protein; Provisional
Probab=91.23 E-value=0.92 Score=40.98 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=53.3
Q ss_pred eEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcC
Q 026046 116 AVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQS 195 (244)
Q Consensus 116 AVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~ 195 (244)
+...++..++||+.|+++. ..|.+|+++++=|+.. +. ..++.++..+=.+.
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a----------------~~------------~~l~r~alamGaD~ 80 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL----------------QN------------SKVRKDVLSRGPHS 80 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH----------------hH------------HHHHHHHHHcCCCE
Confidence 3345788899999999998 6789999999755320 00 01112222222222
Q ss_pred CCcEEEEEEEcCCH---HHHHHHHhhhCCCcEEEECCC
Q 026046 196 KVMVDTVLIESDLV---AKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 196 gV~ve~vvveGd~v---aeaIle~A~e~~aDLIVmGS~ 230 (244)
++-+......|.+. +..|..++++.++|||+.|..
T Consensus 81 avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~ 118 (254)
T PRK12342 81 LYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEG 118 (254)
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 33222222224343 688889999989999999987
No 26
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=90.48 E-value=3.2 Score=36.95 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=29.4
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
..++|+|++.|.-.|.-++.++.+. +.+++.+|+..
T Consensus 11 ~~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~ 46 (252)
T TIGR00268 11 EFKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVS 46 (252)
T ss_pred hcCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecC
Confidence 4688999999999999888887654 56788899853
No 27
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=89.42 E-value=2.3 Score=44.45 Aligned_cols=118 Identities=8% Similarity=0.089 Sum_probs=65.3
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhc--CCCCeEEEEEEecCCCC-CCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAV--NPSTLIFLIHVFPQVKF-VPSPLG-KLPRNQVNPEQLETFMAQETGKRRQL 184 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~--~~ga~L~LLHVi~~~~~-~~~~~g-~~~~~~~~~e~~~~~~~~~~e~a~~l 184 (244)
..-|||+|+-..++-...+..+-.... +..-.++++|.++-... .+...- ..... ........ ....++.-..
T Consensus 457 ~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~--~~~~~~~~-~~~~~~i~~a 533 (832)
T PLN03159 457 AELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKS--GRPALNRT-QAQSDHIINA 533 (832)
T ss_pred CceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccc--cccccccc-cccccHHHHH
Confidence 456899999988887777776433222 33468999999974421 111000 00000 00000000 0001222223
Q ss_pred HHHHHhHhhcCCCcEEEEE--EEcCCHHHHHHHHhhhCCCcEEEECCCC
Q 026046 185 LQKFLDTCSQSKVMVDTVL--IESDLVAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vv--veGd~vaeaIle~A~e~~aDLIVmGS~r 231 (244)
++.+.+.. .++.++... -.....++.||..|++.++++||++=|+
T Consensus 534 f~~~~~~~--~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk 580 (832)
T PLN03159 534 FENYEQHA--GCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHK 580 (832)
T ss_pred HHHHHhhc--CceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCC
Confidence 33333322 256666443 3345789999999999999999999993
No 28
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=87.90 E-value=1.3 Score=40.18 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=54.1
Q ss_pred EeEcCCHhHHHHHHHHHHHhc-CCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhh
Q 026046 115 VAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCS 193 (244)
Q Consensus 115 VAVDgSe~S~~AL~~Al~lA~-~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~ 193 (244)
++...++..+.|++.|+++.. ..+.+|++|++=|+. +++.+.++.
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~------------------------------a~~~lr~aL---- 76 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ------------------------------AEEALREAL---- 76 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh------------------------------hHHHHHHHH----
Confidence 344457788999999999988 588999999975432 111122222
Q ss_pred cCCCcEEEEEE----Ec---CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 194 QSKVMVDTVLI----ES---DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 194 ~~gV~ve~vvv----eG---d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
..|+.--.++. .+ -..+..|...+++.+.|||++|..
T Consensus 77 AmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~q 120 (260)
T COG2086 77 AMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQ 120 (260)
T ss_pred hcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 22443322222 12 245678889999999999999977
No 29
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=87.44 E-value=11 Score=35.56 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 104 GNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 104 ~~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
+.|-....++||++.|.-.|.-|+.++.+ .|.+++.+|+.
T Consensus 166 GlP~g~~~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~ 205 (371)
T TIGR00342 166 GLPVGTQGKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFF 205 (371)
T ss_pred CcCcCcCCeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEe
Confidence 33445778999999999999888877644 37899999987
No 30
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=87.19 E-value=4.7 Score=39.01 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=31.6
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHh-cCCCCeEEEEEEec
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHA-VNPSTLIFLIHVFP 148 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA-~~~ga~L~LLHVi~ 148 (244)
+.++|+||+.|...|.-.|.....+. ...+-+|+++||--
T Consensus 14 ~~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh 54 (436)
T PRK10660 14 TSRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH 54 (436)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC
Confidence 45899999999999998887766554 23467999999964
No 31
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=86.64 E-value=3.8 Score=33.60 Aligned_cols=83 Identities=13% Similarity=0.232 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
.||..| ...+.+|+.|+|+++....+...| +.. ..-+.+-|..+...+...|+.. ++.
T Consensus 15 ~aL~~A----~~~~~~v~~vfv~d~~~~~~~~~~--------~~r--------~~Fl~~sL~~L~~~L~~~g~~L--~v~ 72 (165)
T PF00875_consen 15 PALHAA----AQNGDPVLPVFVFDPEEFHPYRIG--------PRR--------RRFLLESLADLQESLRKLGIPL--LVL 72 (165)
T ss_dssp HHHHHH----HHTTSEEEEEEEE-HHGGTTCSSC--------HHH--------HHHHHHHHHHHHHHHHHTTS-E--EEE
T ss_pred HHHHHH----HHcCCCeEEEEEecccccccccCc--------chH--------HHHHHHHHHHHHHHHHhcCcce--EEE
Confidence 455544 345688999999977521110001 111 1233444556666666667654 677
Q ss_pred EcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 205 ESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 205 eGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|++ .+.|.+++++.+++.|+.-..
T Consensus 73 ~g~~-~~~l~~l~~~~~~~~V~~~~~ 97 (165)
T PF00875_consen 73 RGDP-EEVLPELAKEYGATAVYFNEE 97 (165)
T ss_dssp ESSH-HHHHHHHHHHHTESEEEEE--
T ss_pred ecch-HHHHHHHHHhcCcCeeEeccc
Confidence 8876 599999999999999998876
No 32
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.19 E-value=9.8 Score=36.67 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEE
Q 026046 124 MDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVL 203 (244)
Q Consensus 124 ~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vv 203 (244)
-.||..|++.+...+..|+.|+++++..... + . ....-+.+-|..+.+.+++.|+.. ++
T Consensus 38 N~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~---~---------~-------~r~~Fl~esL~~L~~~L~~~g~~L--~v 96 (454)
T TIGR00591 38 NWALIAAQTLALKKKLPLHVCFCLVDFFLAA---T---------R-------RHYFFMLGGLDEVANECERLIIPF--HL 96 (454)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEeCCCcccc---c---------H-------HHHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 4677777766544566799999997643100 1 0 112334445566666666667666 56
Q ss_pred EEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 204 IESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 204 veGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
..|++ .+.|.+++++++|+.|+.-..
T Consensus 97 ~~g~~-~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 97 LDGPP-KELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred eecCh-HHHHHHHHHHcCCCEEEEecc
Confidence 67877 599999999999999999776
No 33
>PRK13820 argininosuccinate synthase; Provisional
Probab=84.66 E-value=17 Score=34.89 Aligned_cols=36 Identities=6% Similarity=-0.069 Sum_probs=29.3
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCC-eEEEEEEec
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPST-LIFLIHVFP 148 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga-~L~LLHVi~ 148 (244)
+++|+||+.|...|.-++.|+.+. .+. +|+.+|+..
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e~---~g~~~Viav~vd~ 38 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKEK---YGYDEVITVTVDV 38 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHHh---cCCCEEEEEEEEC
Confidence 589999999999999999997543 243 899999863
No 34
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=84.42 E-value=11 Score=31.83 Aligned_cols=33 Identities=12% Similarity=0.060 Sum_probs=25.4
Q ss_pred EEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 113 ILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
|+|++.|...|.-++.++.+.. +.++..+|+..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~ 33 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATS 33 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCC
Confidence 6899999999998888876653 23788888853
No 35
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=84.41 E-value=12 Score=30.55 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=53.8
Q ss_pred EEEEeEcC-----CHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 026046 112 IIYVAVGK-----SQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQ 186 (244)
Q Consensus 112 kILVAVDg-----Se~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe 186 (244)
+|||=++- ++.+.++|..|.+++...+.+++++.+-+... . . +. |
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~-----------------~-~-------~~----l- 50 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE-----------------A-A-------EA----L- 50 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-----------------H-H-------HH----H-
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh-----------------h-H-------HH----H-
Confidence 35555553 47899999999999998899999987652110 0 0 11 1
Q ss_pred HHHhHhhcCCCcEEEEEEEc--------CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 187 KFLDTCSQSKVMVDTVLIES--------DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvveG--------d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
++.+...|+.-- +.+.+ ...++.|.+.+++.++|+|++|..
T Consensus 51 --~~~l~~~G~d~v-~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t 99 (164)
T PF01012_consen 51 --RKALAKYGADKV-YHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGST 99 (164)
T ss_dssp --HHHHHSTTESEE-EEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESS
T ss_pred --hhhhhhcCCcEE-EEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 112333455332 22222 135678899999999999999987
No 36
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=83.76 E-value=22 Score=29.44 Aligned_cols=34 Identities=9% Similarity=-0.065 Sum_probs=28.2
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
+|+|++.|...|.-++.++.+ .|.+++.+|+...
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 589999999999999888865 2788999998743
No 37
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=83.26 E-value=5.1 Score=36.22 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=51.1
Q ss_pred cCCHhHHHHHHHHHHHhcCCC-CeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCC
Q 026046 118 GKSQSSMDALSWTLRHAVNPS-TLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSK 196 (244)
Q Consensus 118 DgSe~S~~AL~~Al~lA~~~g-a~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~g 196 (244)
-.++..++||+.|+++..+.+ .+|++|++=|+.. +. ...|.++.++=.+.+
T Consensus 33 ~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a----------------~~------------~~~lr~aLAmGaD~a 84 (256)
T PRK03359 33 KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL----------------TN------------AKGRKDVLSRGPDEL 84 (256)
T ss_pred ccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch----------------hh------------HHHHHHHHHcCCCEE
Confidence 357888999999999987654 7999999865421 00 011222222212222
Q ss_pred CcEEEEEEEc-C--CHHHHHHHHhhhCCCcEEEECCC
Q 026046 197 VMVDTVLIES-D--LVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 197 V~ve~vvveG-d--~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+-+......| + ..+..|..++++.++|||+.|..
T Consensus 85 vli~d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~ 121 (256)
T PRK03359 85 IVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDG 121 (256)
T ss_pred EEEecCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 2221111111 1 33677888889999999999987
No 38
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=81.95 E-value=12 Score=36.55 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
.||..|++ .+..|+.|+|+++........| .. ...-+.+-|..+.+.+...|++. .+.
T Consensus 17 ~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~--------~~--------r~~Fl~esL~~L~~~L~~~G~~L--~v~ 74 (471)
T TIGR03556 17 IGLAAARQ----QSAKVVGLFCLDPNILQADDMA--------PA--------RVAYLIGCLQELQQRYQQAGSQL--LIL 74 (471)
T ss_pred HHHHHHHh----cCCCEEEEEEEchhhhccccCC--------HH--------HHHHHHHHHHHHHHHHHHCCCCe--EEE
Confidence 45555543 3567999999876421100001 00 01233444556666666667766 566
Q ss_pred EcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 205 ESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 205 eGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|++ .+.|.+++++++++.|+.-..
T Consensus 75 ~G~p-~~vl~~l~~~~~~~~V~~~~~ 99 (471)
T TIGR03556 75 QGDP-VQLIPQLAQQLGAKAVYWNLD 99 (471)
T ss_pred ECCH-HHHHHHHHHHcCCCEEEEecc
Confidence 7877 599999999999999997666
No 39
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=81.21 E-value=15 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=25.8
Q ss_pred EEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 113 ILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
|+|++.|...|.-.+.++.+.. .++.++|+...
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----~~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----YQVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----CCEEEEEEcCC
Confidence 6899999999988888876542 37888998654
No 40
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=80.95 E-value=23 Score=29.46 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhCCCcEEEECCC
Q 026046 209 VAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 209 vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.++.|.+.+++.++|+|++|..
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t 100 (181)
T cd01985 79 TAKALAALIKKEKPDLILAGAT 100 (181)
T ss_pred HHHHHHHHHHHhCCCEEEECCc
Confidence 3678889999999999999998
No 41
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=79.03 E-value=13 Score=35.56 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
.||..|++. +.+|+.|+|+++........+..+. ..+. ...-+.+-|+++.+.++..|+.. ++.
T Consensus 17 ~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~~~--~~~~--------r~~Fl~esL~~L~~~L~~~g~~L--~v~ 80 (429)
T TIGR02765 17 PALYKASSS----SDTLIPLYCFDPRQFKLTHFFGFPK--TGPA--------RGKFLLESLKDLRTSLRKLGSDL--LVR 80 (429)
T ss_pred HHHHHHHhc----CCeEEEEEEECchHhccccccccCC--CCHH--------HHHHHHHHHHHHHHHHHHcCCCe--EEE
Confidence 456555533 3579999998764321000000000 0111 11234445666666676667766 556
Q ss_pred EcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 205 ESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 205 eGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|++ .+.|.+++++.+|+.|+.-..
T Consensus 81 ~G~~-~~vl~~L~~~~~~~~V~~~~~ 105 (429)
T TIGR02765 81 SGKP-EDVLPELIKELGVRTVFLHQE 105 (429)
T ss_pred eCCH-HHHHHHHHHHhCCCEEEEecc
Confidence 7877 599999999999999999766
No 42
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=76.66 E-value=33 Score=27.98 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=26.0
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
||+|++.|...|.-++.++.+. +.++..+|+..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~ 33 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDY 33 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEEC
Confidence 5899999999999988877542 45788888854
No 43
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=75.79 E-value=31 Score=31.91 Aligned_cols=41 Identities=15% Similarity=-0.037 Sum_probs=31.8
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
.+.+|+|++.|.+.|.-.|..+.+.....+..+.+|||-..
T Consensus 26 ~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 26 EFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred hCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 34789999999999999998887665433557889998653
No 44
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=75.33 E-value=43 Score=32.20 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=27.8
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
||+|++.|.-.|.-++.|+.+. +.+|+.+|+..
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~ 33 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADV 33 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEec
Confidence 5899999999999999987653 67899999864
No 45
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=75.31 E-value=38 Score=26.68 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=27.0
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
+|+|++.|...|.-++..+.+..... .++.++|+-.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 58999999999998888877655322 4677888743
No 46
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=72.44 E-value=51 Score=30.15 Aligned_cols=89 Identities=9% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFL 189 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~ 189 (244)
..+|+||..|.-.|--.+..|.+.+ |..+..+.|..|.. | .... +.+.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~l---G~~v~AvTv~sP~~--p------------~~e~---------------e~A~ 64 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEAL---GDNVVAVTVDSPYI--P------------RREI---------------EEAK 64 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHh---ccceEEEEEecCCC--C------------hhhh---------------hHHH
Confidence 3599999999888877777776655 57888888876421 1 1111 1122
Q ss_pred hHhhcCCCcEEEEEE--Ec---------------CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 190 DTCSQSKVMVDTVLI--ES---------------DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 190 ~~~~~~gV~ve~vvv--eG---------------d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
..++..|++.+.+-. .+ ..+-+.|++.|.+.+.|.|+=|+.
T Consensus 65 ~~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtN 122 (269)
T COG1606 65 NIAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTN 122 (269)
T ss_pred HHHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCc
Confidence 222333444432211 01 124578899999999999999986
No 47
>PLN00200 argininosuccinate synthase; Provisional
Probab=71.38 E-value=1e+02 Score=29.82 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.1
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
..+||+|++.|.-.|.-++.|+.+. .+.+|+.+|+..
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e~---~G~eViav~id~ 40 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLREN---YGCEVVCFTADV 40 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHh---hCCeEEEEEEEC
Confidence 3579999999999999999988653 267899999864
No 48
>PRK14057 epimerase; Provisional
Probab=71.29 E-value=50 Score=29.94 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=24.8
Q ss_pred hHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 190 ~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+...+++..+. +.+.|+-- ..-+..+.+.++|.+|+|+.
T Consensus 185 ~~~~~~~~~~~-IeVDGGI~-~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 185 CLLGDKREGKI-IVIDGSLT-QDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHhcCCCce-EEEECCCC-HHHHHHHHHCCCCEEEEChH
Confidence 33444566554 44567653 44445556689999999987
No 49
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=70.04 E-value=43 Score=31.72 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=27.9
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
..++|+|++.|.-.|.-++.++.+ .+-+++.+|+.
T Consensus 4 ~~~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~ 38 (360)
T PRK14665 4 KNKRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFR 38 (360)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEe
Confidence 557999999999988888877654 36778888875
No 50
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=68.92 E-value=58 Score=28.74 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=24.7
Q ss_pred hHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 190 ~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+...+.+.++. +.+.|+-- ..-+..+.+.++|.+|+|+.
T Consensus 163 ~~~~~~~~~~~-IeVDGGI~-~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 163 KKIDALGKPIR-LEIDGGVK-ADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHhcCCCee-EEEECCCC-HHHHHHHHHcCCCEEEEChh
Confidence 33334455544 44567653 44555566789999999988
No 51
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=68.79 E-value=74 Score=27.22 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=26.8
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
|++|++.|...|.-|+.++.+. |-+++.|+...+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~----G~~v~~l~~~~~ 34 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEE----GHEVVALLNLTP 34 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHc----CCEEEEEEEEec
Confidence 5789999999999999988863 567777776643
No 52
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=68.50 E-value=4.2 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.8
Q ss_pred EcCCHHHHHHHHhhhCCCcEEEECCC---CCCh-HHHHh
Q 026046 205 ESDLVAKAILDLIPVLNIRKLVVGTT---KSSL-RLHQK 239 (244)
Q Consensus 205 eGd~vaeaIle~A~e~~aDLIVmGS~---r~Gl-rRf~~ 239 (244)
.-.+. +.|+++|+++++|++|+|.- -.|+ ..|++
T Consensus 47 ~~~d~-~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~ 84 (100)
T PF02844_consen 47 DITDP-EELADFAKENKIDLVVVGPEAPLVAGLADALRA 84 (100)
T ss_dssp -TT-H-HHHHHHHHHTTESEEEESSHHHHHTTHHHHHHH
T ss_pred CCCCH-HHHHHHHHHcCCCEEEECChHHHHHHHHHHHHH
Confidence 34554 99999999999999999976 2565 44443
No 53
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=67.90 E-value=25 Score=27.09 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHhhcCCCcEEEEEE-----------EcCCHHHHHHHHhhhCCCcEEEECCCC
Q 026046 181 RRQLLQKFLDTCSQSKVMVDTVLI-----------ESDLVAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 181 a~~lLe~~~~~~~~~gV~ve~vvv-----------eGd~vaeaIle~A~e~~aDLIVmGS~r 231 (244)
.++.|+++..+|...|+++-..++ .|.-..++|.+.++..++|+||.-...
T Consensus 6 ~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~L 67 (95)
T PF13167_consen 6 FEESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNEL 67 (95)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCC
Confidence 344567777777777776654333 244456999999999999999998763
No 54
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=66.97 E-value=13 Score=28.90 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=35.5
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhh
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLAR 242 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~ 242 (244)
++..+.++++|++++.. -.++ ..+-++....++|+|++|.+ +.-+..++..+.
T Consensus 19 ~k~k~~~~e~gi~~~i~---a~~~-~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~ 72 (104)
T PRK09590 19 KKTTEYLKEQGKDIEVD---AITA-TEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGA 72 (104)
T ss_pred HHHHHHHHHCCCceEEE---EecH-HHHHHhhccCCCCEEEEChHHHHHHHHHHHHhh
Confidence 33445566778887633 2243 45555555668999999999 888888887653
No 55
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=64.74 E-value=1.2e+02 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=28.7
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
++|+|++.|.-.|.-++.++.+.. |.+++.+||...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~---G~~v~av~vd~G 52 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAI---GDRLTCVFVDHG 52 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHh---CCCEEEEEEeCC
Confidence 789999999998888887765532 568999998653
No 56
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.43 E-value=23 Score=26.91 Aligned_cols=48 Identities=8% Similarity=0.201 Sum_probs=31.6
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhh
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKL 240 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~ 240 (244)
.+++.|+++. ++......+.+++.+.+.++|+|.+... ...+....+.
T Consensus 23 ~l~~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l 71 (121)
T PF02310_consen 23 YLRKAGHEVD--ILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRL 71 (121)
T ss_dssp HHHHTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHH
T ss_pred HHHHCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHH
Confidence 3445577664 3344433599999999999999999885 5555444443
No 57
>PRK00509 argininosuccinate synthase; Provisional
Probab=62.12 E-value=59 Score=31.35 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=29.5
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
.++|+|++.|.-.|--++.|+.+.. +.+|+.+|+.-
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e~l---G~eViavt~d~ 37 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKETY---GCEVIAFTADV 37 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHhh---CCeEEEEEEec
Confidence 3689999999999999999987642 67899999864
No 58
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=61.95 E-value=1.2e+02 Score=27.06 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=25.5
Q ss_pred hHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 190 ~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+...+++.++. +.+.|+-- ..-+..+.+.++|.+|+|+.
T Consensus 171 ~~~~~~~~~~~-IeVDGGI~-~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 171 NRLGNRRVEKL-ISIDGSMT-LELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHhcCCCce-EEEECCCC-HHHHHHHHHCCCCEEEEChh
Confidence 33344566654 44567653 44555566789999999987
No 59
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.11 E-value=23 Score=27.44 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhh
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLAR 242 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~ 242 (244)
++..+.|+++|++++... .+. ..+-+..+ ++|+|++|.+ +.-+.++++.+.
T Consensus 18 ~km~~~a~~~gi~~~i~a---~~~-~e~~~~~~--~~Dvill~PQv~~~~~~i~~~~~ 69 (99)
T cd05565 18 NALNKGAKERGVPLEAAA---GAY-GSHYDMIP--DYDLVILAPQMASYYDELKKDTD 69 (99)
T ss_pred HHHHHHHHHCCCcEEEEE---eeH-HHHHHhcc--CCCEEEEcChHHHHHHHHHHHhh
Confidence 344455667889877433 232 44555554 6799999999 888888888764
No 60
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=61.04 E-value=38 Score=35.39 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=34.5
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCC
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVK 151 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~ 151 (244)
.+|.+-.=|.+..++||.++..++..+...+++++-++...
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 36666777788888999999999999999999999987653
No 61
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=60.27 E-value=27 Score=27.33 Aligned_cols=38 Identities=5% Similarity=-0.011 Sum_probs=28.2
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.++..|+++. ..-...+.+.+++.+.+.++|.|+|...
T Consensus 22 ~l~~~G~~vi--~lG~~vp~e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 22 ALRDAGFEVI--YTGLRQTPEEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEccc
Confidence 3556688774 2222334699999999999999999887
No 62
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=59.38 E-value=1.4e+02 Score=27.50 Aligned_cols=40 Identities=13% Similarity=-0.066 Sum_probs=30.5
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
+.++++++.|.+.|.-+|..+.+.+...+..+.+||+-..
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 3556788999999999999887766433567899998643
No 63
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.21 E-value=34 Score=26.30 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=30.0
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChH
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLR 235 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Glr 235 (244)
.++..|+++. .+-..-+ .+.+++.+.+.++|+|++... ...+.
T Consensus 22 ~l~~~G~~V~-~lg~~~~-~~~l~~~~~~~~pdvV~iS~~~~~~~~ 65 (119)
T cd02067 22 ALRDAGFEVI-DLGVDVP-PEEIVEAAKEEDADAIGLSGLLTTHMT 65 (119)
T ss_pred HHHHCCCEEE-ECCCCCC-HHHHHHHHHHcCCCEEEEeccccccHH
Confidence 4555688773 2222334 589999999999999999877 55553
No 64
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=59.16 E-value=1.3e+02 Score=26.70 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=25.6
Q ss_pred HHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+++++..+++.++. +.+.|+--.+.| ..+.+.++|.+|+|+.
T Consensus 158 ~lr~~~~~~~~~~~-IeVDGGI~~~~i-~~~~~aGad~~V~Gss 199 (229)
T PRK09722 158 ELKALRERNGLEYL-IEVDGSCNQKTY-EKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHHhcCCCeE-EEEECCCCHHHH-HHHHHcCCCEEEEChH
Confidence 33344445566664 445666533444 4555689999999954
No 65
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=58.37 E-value=1e+02 Score=28.29 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=27.1
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
||+|++.|.-.|.-++.++.+. .|.+++.+|+...
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g 35 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNG 35 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCC
Confidence 5899999999898888877653 2567999998543
No 66
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=57.72 E-value=95 Score=24.68 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=24.7
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
.|+|++.|...|.-++.++.+.. +.++.++|+-
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~ 35 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVD 35 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeC
Confidence 58999999999988888876543 2266777764
No 67
>PRK04527 argininosuccinate synthase; Provisional
Probab=57.59 E-value=1.3e+02 Score=29.21 Aligned_cols=35 Identities=6% Similarity=0.006 Sum_probs=28.3
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
.++|+|++.|.-.|--++.|+.+ .|.+|+.+++..
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~ 36 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADT 36 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEe
Confidence 36899999999889899998765 267888888853
No 68
>PRK00919 GMP synthase subunit B; Validated
Probab=56.57 E-value=78 Score=29.36 Aligned_cols=36 Identities=14% Similarity=-0.021 Sum_probs=29.6
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
++|+|++.|.-.|.-++.++.+. .|.+++.+|+...
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~G 57 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTG 57 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEECC
Confidence 89999999999998888877653 3678999998743
No 69
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=55.55 E-value=1.3e+02 Score=26.94 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCC-eEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPST-LIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga-~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~ 190 (244)
|+++-+.|.+.|-.|+-||++. |- -++|+++.|...- .++ ... ++.+. -+++
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~----G~eV~~Ll~~~p~~~d-S~m-~H~----~n~~~----------------~~~~- 54 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEE----GHEVVYLLTVKPENGD-SYM-FHT----PNLEL----------------AELQ- 54 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHc----CCeeEEEEEEecCCCC-eee-eec----cchHH----------------HHHH-
Confidence 5677788999999999888755 33 4567777766531 010 110 11111 1111
Q ss_pred HhhcCCCcEEEEEEEc--CCHHHHHHHHhhhCCCcEEEECCCCC--ChHHHHhhhh
Q 026046 191 TCSQSKVMVDTVLIES--DLVAKAILDLIPVLNIRKLVVGTTKS--SLRLHQKLAR 242 (244)
Q Consensus 191 ~~~~~gV~ve~vvveG--d~vaeaIle~A~e~~aDLIVmGS~r~--GlrRf~~~~~ 242 (244)
++..|+++......| +.-.+.+.+.....++|.||.|.-.+ ...|..++|+
T Consensus 55 -Ae~~gi~l~~~~~~g~~e~eve~L~~~l~~l~~d~iv~GaI~s~yqk~rve~lc~ 109 (223)
T COG2102 55 -AEAMGIPLVTFDTSGEEEREVEELKEALRRLKVDGIVAGAIASEYQKERVERLCE 109 (223)
T ss_pred -HHhcCCceEEEecCccchhhHHHHHHHHHhCcccEEEEchhhhHHHHHHHHHHHH
Confidence 122366654444434 11237777888889999999998733 3366666665
No 70
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.55 E-value=33 Score=28.04 Aligned_cols=49 Identities=4% Similarity=-0.058 Sum_probs=32.8
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh---HHHHhhhh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL---RLHQKLAR 242 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl---rRf~~~~~ 242 (244)
++.+|+++...= ..-+ .+.+++.|.++++|+|.|.+. .+.+ +++...++
T Consensus 25 l~~~GfeVi~LG-~~v~-~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~ 77 (134)
T TIGR01501 25 FTNAGFNVVNLG-VLSP-QEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCD 77 (134)
T ss_pred HHHCCCEEEECC-CCCC-HHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHH
Confidence 455688774321 2234 599999999999999999877 4443 45544443
No 71
>PRK08349 hypothetical protein; Validated
Probab=55.38 E-value=1.3e+02 Score=25.45 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.2
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
+++||++.|...|.-++.++.+ .|.+|+.+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 4789999999999888865543 477999999863
No 72
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=54.81 E-value=2.2e+02 Score=27.91 Aligned_cols=40 Identities=8% Similarity=-0.082 Sum_probs=31.0
Q ss_pred CCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 105 NGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 105 ~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
.|-....++||.+.|...|--|+.|+.+ .|.+|+.||+.-
T Consensus 172 lP~g~~gk~lvllSGGiDS~va~~~~~k----rG~~v~~l~f~~ 211 (482)
T PRK01269 172 FPLGTQEDVLSLISGGFDSGVASYMLMR----RGSRVHYCFFNL 211 (482)
T ss_pred CCccccCeEEEEEcCCchHHHHHHHHHH----cCCEEEEEEEec
Confidence 3334667999999999989888877654 378999999863
No 73
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=54.80 E-value=1.5e+02 Score=28.47 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=56.2
Q ss_pred cCCCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 026046 103 NGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRR 182 (244)
Q Consensus 103 ~~~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~ 182 (244)
+.|.+++.+-+++--+| =.|-- |.-++.+.|.++..||-..++.. .+... ++..
T Consensus 169 GLPvGt~Gk~l~LlSGG-IDSPV----A~~l~mkRG~~v~~v~f~~~p~~-------------~~~a~--------~k~~ 222 (383)
T COG0301 169 GLPVGTQGKVLLLLSGG-IDSPV----AAWLMMKRGVEVIPVHFGNPPYT-------------SEKAR--------EKVV 222 (383)
T ss_pred CCccccCCcEEEEEeCC-CChHH----HHHHHHhcCCEEEEEEEcCCCCc-------------hHHHH--------HHHH
Confidence 45666666555554444 22322 22344578999999998654321 11111 1111
Q ss_pred HHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHH---------------------HhhhCCCcEEEECCCCCC
Q 026046 183 QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILD---------------------LIPVLNIRKLVVGTTKSS 233 (244)
Q Consensus 183 ~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle---------------------~A~e~~aDLIVmGS~r~G 233 (244)
. |.. ..+...+.++...++...++.+.|.. +|++.+++.||.|-..+.
T Consensus 223 ~-l~~--~~~~~~~~~~~~~~v~f~~v~~~i~~~~~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQ 291 (383)
T COG0301 223 A-LAL--LRLTSYGGKVRLYVVPFTEVQEEILEKVPESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQ 291 (383)
T ss_pred H-HHh--hhhcccCCceEEEEEchHHHHHHHHhhcCccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchh
Confidence 1 111 33444566676666665555566653 566789999999988443
No 74
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.57 E-value=48 Score=26.86 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=29.6
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL 234 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl 234 (244)
.+...|+++. ..--+.+.+.|++.|.+.++|+|.|... .+..
T Consensus 26 ~lr~~G~eVi--~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~ 68 (137)
T PRK02261 26 ALTEAGFEVI--NLGVMTSQEEFIDAAIETDADAILVSSLYGHGE 68 (137)
T ss_pred HHHHCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEcCccccCH
Confidence 3456688763 2222333699999999999999999887 4444
No 75
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=53.15 E-value=1.1e+02 Score=28.70 Aligned_cols=34 Identities=9% Similarity=-0.046 Sum_probs=25.9
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
++|+|++.|...|.-++..+.+ .+-+|+.+|+.-
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeC
Confidence 4899999999988887765543 356788888863
No 76
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.12 E-value=32 Score=27.79 Aligned_cols=37 Identities=11% Similarity=-0.043 Sum_probs=27.0
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
++..|+++... -.+...+.+++.|.+.++|.|+|.+.
T Consensus 26 l~~~GfeVi~l--g~~~s~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 26 YADLGFDVDVG--PLFQTPEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred HHhCCcEEEEC--CCCCCHHHHHHHHHHcCCCEEEEcCc
Confidence 44568877432 22333589999999999999999877
No 77
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=52.77 E-value=97 Score=27.94 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=54.4
Q ss_pred EeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhc
Q 026046 115 VAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQ 194 (244)
Q Consensus 115 VAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~ 194 (244)
||-.|--.....++.++++|++.+.. +-+.|..+-. ..+|.-. -.++++ +.++....++..+..+|..
T Consensus 32 IACG~HAGDp~~M~~tv~lA~~~gV~---iGAHPsyPD~-~gFGRr~-m~~s~~-------el~~~v~yQigaL~~~a~~ 99 (242)
T PF03746_consen 32 IACGFHAGDPETMRRTVRLAKEHGVA---IGAHPSYPDR-EGFGRRS-MDISPE-------ELRDSVLYQIGALQAIAAA 99 (242)
T ss_dssp EE-SSSS--HHHHHHHHHHHHHTT-E---EEEE---S-T-TTTT-S------HH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccccCHHHHHHHHHHHHHcCCE---eccCCCCCCC-CCCCCCC-CCCCHH-------HHHHHHHHHHHHHHHHHHH
Confidence 34444333445666677777766743 4444443211 1123100 012222 2334455556777778888
Q ss_pred CCCcEEEEEEEc---------CCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 195 SKVMVDTVLIES---------DLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 195 ~gV~ve~vvveG---------d~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
.|.++..+-.+| ...+++|++.++..+.+++++|-..+-+
T Consensus 100 ~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ags~~ 148 (242)
T PF03746_consen 100 EGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAGSEL 148 (242)
T ss_dssp TT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETTSHH
T ss_pred cCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCCcHH
Confidence 899887665544 4568999999999999999998764444
No 78
>PRK14561 hypothetical protein; Provisional
Probab=52.36 E-value=1.5e+02 Score=25.27 Aligned_cols=32 Identities=19% Similarity=-0.096 Sum_probs=22.9
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
+||+|++.|...|--.+.++.+. .++.++|+.
T Consensus 1 mkV~ValSGG~DSslll~~l~~~-----~~v~a~t~~ 32 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF-----YDVELVTVN 32 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc-----CCeEEEEEe
Confidence 47999999999888887766432 345666654
No 79
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=51.83 E-value=43 Score=27.19 Aligned_cols=48 Identities=6% Similarity=-0.013 Sum_probs=31.8
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh---HHHHhhh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL---RLHQKLA 241 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl---rRf~~~~ 241 (244)
++.+|+++-..= ..-+ .+.+++.|.++++|+|.|.+- .+.+ +++..++
T Consensus 23 L~~~GfeVidLG-~~v~-~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l 74 (128)
T cd02072 23 FTEAGFNVVNLG-VLSP-QEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKC 74 (128)
T ss_pred HHHCCCEEEECC-CCCC-HHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHH
Confidence 445688774221 2334 599999999999999999776 4444 4444443
No 80
>PRK05370 argininosuccinate synthase; Validated
Probab=51.17 E-value=2.5e+02 Score=27.62 Aligned_cols=114 Identities=9% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH---------
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETG--------- 179 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e--------- 179 (244)
..+||++|+.|.=.+--++.|-.+. +.+|+.++|--... ..++++.+.+.+..
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~----~~eVia~~aDvGQ~--------------~~ed~~~i~~kA~~~GA~~~~vi 71 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQP--------------DEDDYDAIPRRAMEYGAENARLI 71 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc----CCeEEEEEEECCCC--------------CccchHHHHHHHHHhCCCEEEEe
Confidence 4589999999988888889986654 67888888853210 00122222222111
Q ss_pred -HHHHHHHHHHhHhhcCCCcE----EEEEE-----EcCCHHHHHHHHhhhCCCcEEEECCC-C-CChHHHHhhh
Q 026046 180 -KRRQLLQKFLDTCSQSKVMV----DTVLI-----ESDLVAKAILDLIPVLNIRKLVVGTT-K-SSLRLHQKLA 241 (244)
Q Consensus 180 -~a~~lLe~~~~~~~~~gV~v----e~vvv-----eGd~vaeaIle~A~e~~aDLIVmGS~-r-~GlrRf~~~~ 241 (244)
.-+++.+.+....+ .+.-+ +.... .-.-.++.|+++|++.+++.|.=|+. + +---||....
T Consensus 72 Dlr~eF~e~~i~aI~-anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQvRFE~~~ 144 (447)
T PRK05370 72 DCRAQLVAEGIAAIQ-CGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYG 144 (447)
T ss_pred ccHHHHHHHHHHHHH-cCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchHHHHHHH
Confidence 11223334432222 22211 11111 11235789999999999999999999 4 3335776543
No 81
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=51.08 E-value=39 Score=31.13 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=35.7
Q ss_pred HHHHHHhHhhcCCCcEEEEEEE-cCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 184 LLQKFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 184 lLe~~~~~~~~~gV~ve~vvve-Gd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|+.+.+..++.++++.-..+. .+- .+.|.++.+++++|.||+-.|
T Consensus 116 YL~~Cl~~Ykql~i~a~G~~~~E~eq-p~~i~~Ll~~~~PDIlViTGH 162 (283)
T TIGR02855 116 YLRKCLKLYKKIGVPVVGIHCKEKEM-PEKVLDLIEEVRPDILVITGH 162 (283)
T ss_pred HHHHHHHHHHHhCCceEEEEecchhc-hHHHHHHHHHhCCCEEEEeCc
Confidence 3556666667778888876664 444 499999999999999999777
No 82
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=51.02 E-value=1.5e+02 Score=28.78 Aligned_cols=85 Identities=11% Similarity=0.148 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
.||..|++.+ +..|+.|+|+++........| .. ...-+.+-|.++.+.++..|++. ++.
T Consensus 18 ~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~~~--------~~--------r~~Fl~esL~~L~~~L~~~g~~L--~v~ 76 (472)
T PRK10674 18 LALAAACRDP---SARVLALFIATPAQWAAHDMA--------PR--------QAAFINAQLNALQIALAEKGIPL--LFH 76 (472)
T ss_pred HHHHHHHhCC---CCCEEEEEEECchhhccCCCC--------HH--------HHHHHHHHHHHHHHHHHHcCCce--EEE
Confidence 4666665432 246999999987421100001 11 11233444556666666667666 555
Q ss_pred EcC---CHHHHHHHHhhhCCCcEEEECCC
Q 026046 205 ESD---LVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 205 eGd---~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|. .+.+.|.+++++.+|+.|+.-..
T Consensus 77 ~g~~~g~~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 77 EVDDFAASVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred ecCCcCCHHHHHHHHHHHcCCCEEEEecc
Confidence 542 34588889999999999998655
No 83
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=50.91 E-value=36 Score=31.41 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 184 lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.|+.+.+..++.++++.-..+.-..-.+.|.++.+++++|.||+-.|
T Consensus 117 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGH 163 (287)
T PF05582_consen 117 YLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGH 163 (287)
T ss_pred HHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCc
Confidence 45666667777789988776654334599999999999999999777
No 84
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=50.64 E-value=1.8e+02 Score=25.87 Aligned_cols=31 Identities=6% Similarity=0.195 Sum_probs=22.1
Q ss_pred cEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 198 ~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
++. +-+.|+- -..-+..+.+.++|.+|+||.
T Consensus 169 ~~~-IeVDGGI-~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 169 DIL-IEVDGGI-NLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CeE-EEEeCCc-CHHHHHHHHHcCCCEEEEEEE
Confidence 443 3345655 366667777789999999998
No 85
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=50.52 E-value=1.2e+02 Score=29.42 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHHhHhhcCCCcEEEEEEE-cCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 181 RRQLLQKFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 181 a~~lLe~~~~~~~~~gV~ve~vvve-Gd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+.+-|..+.+.+...|.+.- ++. |.+ .+.|.+++++++++.|..-..
T Consensus 49 l~~sL~~L~~~L~~~G~~L~--v~~~g~~-~~~l~~l~~~~~i~~v~~~~~ 96 (475)
T TIGR02766 49 LKQSLAHLDQSLRSLGTCLV--TIRSTDT-VAALLDCVRSTGATRLFFNHL 96 (475)
T ss_pred HHHHHHHHHHHHHHcCCceE--EEeCCCH-HHHHHHHHHHcCCCEEEEecc
Confidence 44455666666666676663 333 555 699999999999999977655
No 86
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=50.40 E-value=2.3e+02 Score=26.96 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=26.0
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
..++|+|++.|.-.|.-++.+.. ..+.+|+.+|+.
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~ 38 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMR 38 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEec
Confidence 45799999999988877776533 246678888873
No 87
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=50.15 E-value=40 Score=25.61 Aligned_cols=51 Identities=12% Similarity=-0.008 Sum_probs=33.5
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhh
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLAR 242 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~ 242 (244)
++..+.+++.|++++.... +. ..+-+.+. ++|+|++|.+ +.-+.+++..+.
T Consensus 21 ~k~~~~~~~~gi~~~v~a~---~~-~~~~~~~~--~~Dvill~pqi~~~~~~i~~~~~ 72 (95)
T TIGR00853 21 NKMNKAAEEYGVPVKIAAG---SY-GAAGEKLD--DADVVLLAPQVAYMLPDLKKETD 72 (95)
T ss_pred HHHHHHHHHCCCcEEEEEe---cH-HHHHhhcC--CCCEEEECchHHHHHHHHHHHhh
Confidence 4445556677888763332 33 34445444 5799999999 887888887654
No 88
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=50.08 E-value=1.8e+02 Score=25.65 Aligned_cols=93 Identities=14% Similarity=0.078 Sum_probs=55.5
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~ 190 (244)
+|+++...|.+.|.-|+.++.+. ..-++|+++++.........+ +..+ -...
T Consensus 1 Mkv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s~~~h~------~~~~------------------~~~~ 52 (222)
T TIGR00289 1 MKVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEESYMFHS------PNLH------------------LTDL 52 (222)
T ss_pred CeEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCcccccc------CCHH------------------HHHH
Confidence 36888999999999999998864 245667777765311000000 1111 1112
Q ss_pred HhhcCCCcEEEEEEEc--CCHHHHHHHHhhhCCCcEEEECCCC
Q 026046 191 TCSQSKVMVDTVLIES--DLVAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 191 ~~~~~gV~ve~vvveG--d~vaeaIle~A~e~~aDLIVmGS~r 231 (244)
.++..|++...+...+ +..-+.+.+..++.+++-||-|.=.
T Consensus 53 qA~algiPl~~~~~~~~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 53 VAEAVGIPLIKLYTSGEEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred HHHHcCCCeEEEEcCCchhHHHHHHHHHHHHcCCCEEEECccc
Confidence 2334577765444434 2233666677778899999999773
No 89
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=49.98 E-value=49 Score=32.16 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 170 LETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 170 ~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
...+++...+.+.++++++.+.++..|.++. .....+...+.|.++++++++..||.|..
T Consensus 38 ~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~-~a~t~~eA~~~v~~i~~~~~~~~vv~~kS 97 (432)
T TIGR00273 38 VKEIKLKVLENLDFYLDQLKENVTQRGGHVY-YAKTAEEARKIIGKVAQEKNGKKVVKSKS 97 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 3444455556777888888888888887664 22233444567789999999999999855
No 90
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=49.10 E-value=30 Score=27.27 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=24.8
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
|||+|++-||-.+.+++++...+. +.|.+|.++-
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~-~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLK-RAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHH-TTTSEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHh-hCCCEEEEEE
Confidence 699999999999999888876665 4577755543
No 91
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=48.96 E-value=49 Score=23.64 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=27.5
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFL 143 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~L 143 (244)
.++|+++.|..+..++|.+...+.+...+-.+.+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4899999999999999988887777766655554
No 92
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=47.85 E-value=35 Score=30.34 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 106 GTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 106 ~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
+...-++|++++|.++ .++++|++. ++.+++.|
T Consensus 32 ~~~~v~~I~~alD~t~---~vi~~Ai~~----~~dlIitH 64 (249)
T TIGR00486 32 GNEEVKKVVVAVDASE---SVADEAVRL----GADLIITH 64 (249)
T ss_pred CCcccCEEEEEecCCH---HHHHHHHHC----CCCEEEEc
Confidence 3457899999999987 556666543 45555555
No 93
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=47.83 E-value=2.5e+02 Score=26.66 Aligned_cols=39 Identities=10% Similarity=-0.007 Sum_probs=30.6
Q ss_pred CCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 106 GTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 106 ~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
|-....+++|++.|.-.|--|+.++.+ .|.+++.+|...
T Consensus 172 P~g~~gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 172 PVGTSGKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred ccCCCCCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 334668899999999989888877654 378999999854
No 94
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=46.90 E-value=2.5e+02 Score=26.43 Aligned_cols=33 Identities=6% Similarity=-0.057 Sum_probs=26.6
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
++|+|++.|...|.-++.++.+ .+.+|+.+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 5899999999999888877655 35688888884
No 95
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=46.76 E-value=1.9e+02 Score=26.99 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=30.2
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
..+++++..+.+.|.-.|..+.+.+...+..+-+|||-.
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDT 75 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDT 75 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCC
Confidence 356788999999999999988877643355788999854
No 96
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=46.20 E-value=1.5e+02 Score=25.45 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=23.9
Q ss_pred EeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEE
Q 026046 115 VAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (244)
Q Consensus 115 VAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHV 146 (244)
++.-.++.+..+|..+..++...+.++.++.+
T Consensus 29 ~~~vi~e~~~~~l~ea~~la~~~g~~v~av~~ 60 (202)
T cd01714 29 VPLIINPYDEYAVEEALRLKEKYGGEVTVVSM 60 (202)
T ss_pred CCccCChHhHHHHHHHHHhhhhcCCEEEEEEE
Confidence 55667788889999999887766667666554
No 97
>PRK08299 isocitrate dehydrogenase; Validated
Probab=45.49 E-value=33 Score=33.16 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHhcCCCCeEEEEEE
Q 026046 121 QSSMDALSWTLRHAVNPSTLIFLIHV 146 (244)
Q Consensus 121 e~S~~AL~~Al~lA~~~ga~L~LLHV 146 (244)
+.+++..++|++.|++.+.+|+++|=
T Consensus 185 ~~~eRIa~~AF~~A~~r~~kVt~v~K 210 (402)
T PRK08299 185 ESIRDFARASFNYGLDRKYPVYLSTK 210 (402)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 37889999999999877667777763
No 98
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=44.88 E-value=1.2e+02 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 181 RRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 181 a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+.+-|+.+.+.+...|++. .+.+|++ ...|.+++++.+++.|+-...
T Consensus 53 l~~sL~~L~~~L~~~gi~L--~v~~~~~-~~~l~~~~~~~~~~~v~~n~~ 99 (461)
T COG0415 53 LLQSLQALQQSLAELGIPL--LVREGDP-EQVLPELAKQLAATTVFWNRD 99 (461)
T ss_pred HHHHHHHHHHHHHHcCCce--EEEeCCH-HHHHHHHHHHhCcceEEeeee
Confidence 3444566666666667665 6778888 599999999999888887765
No 99
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=43.06 E-value=2.2e+02 Score=24.65 Aligned_cols=38 Identities=8% Similarity=-0.037 Sum_probs=25.2
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCC
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQV 150 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~ 150 (244)
...|+|+-+.|.-.|--|... ..+.|.+|..||...++
T Consensus 2 t~gk~l~LlSGGiDSpVAa~l----m~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 2 TQGKALALLSGGIDSPVAAWL----MMKRGCEVIALHFDSPP 39 (197)
T ss_dssp TT-EEEEE-SSCCHHHHHHHH----HHCBT-EEEEEEEE-TT
T ss_pred CCceEEEEecCCccHHHHHHH----HHHCCCEEEEEEEECCC
Confidence 346899999888777666543 34579999999998654
No 100
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=42.82 E-value=47 Score=28.51 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=26.9
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEE
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LL 144 (244)
+||+++|-||-.+.++++.+-.+.+..+.+|.++
T Consensus 2 k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 2 KRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 6899999999999999998877754356665444
No 101
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=42.08 E-value=2.3e+02 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=26.9
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
++++|++.|.-.|--++.||.+. +.+++.|++.-
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dy 35 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDY 35 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEe
Confidence 57999999999999999988542 45788888763
No 102
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=41.64 E-value=64 Score=29.58 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=35.5
Q ss_pred HHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 182 RQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 182 ~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
++.+.+..+.+...+........+...-+..+++.+...+.|.||.+.-
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecC
Confidence 3445555566667788887776665523699999998889999998755
No 103
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=40.97 E-value=48 Score=23.83 Aligned_cols=34 Identities=6% Similarity=0.002 Sum_probs=22.8
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFL 143 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~L 143 (244)
.++|++++|.+...+.+.....+.+...+.++..
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 5899999999999999999888866655555543
No 104
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=39.60 E-value=2.2e+02 Score=26.75 Aligned_cols=31 Identities=19% Similarity=0.007 Sum_probs=19.0
Q ss_pred cCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEE
Q 026046 194 QSKVMVDTVLIESDLVAKAILDLIPVLNIRKLV 226 (244)
Q Consensus 194 ~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIV 226 (244)
+.|.++. ++..++++.+|.-...+.++|+++
T Consensus 175 ~~GarI~--Li~DGDVa~ai~~~~~~s~vD~~~ 205 (321)
T PRK12388 175 QLGVKVF--ALPDGDVAASVLTCWQDNPYDVMY 205 (321)
T ss_pred HcCCeEE--EeccccHHHHHHHhCCCCCeeEEE
Confidence 4465553 344445667777666777888653
No 105
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=39.34 E-value=53 Score=27.82 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.6
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
|||+|+|-|+-.+.+++++.-.+ ++.+.+|+++-
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L-~~~g~~V~vi~ 34 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQL-TKLGYDVTVLM 34 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHH-HHCCCEEEEEE
Confidence 68999999999999999775544 45576655443
No 106
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=38.92 E-value=33 Score=30.28 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=25.3
Q ss_pred eccCCCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 101 VANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 101 ~~~~~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
++.+.+.+.-++|++++|.++ .+++.|++ .++.+++.|
T Consensus 23 l~vg~~~~~v~~V~~~ld~t~---~vi~~A~~----~~~dlIItH 60 (241)
T PF01784_consen 23 LQVGDPEQEVKKVLVALDATP---EVIEEAIE----KGADLIITH 60 (241)
T ss_dssp EEES-SSSBESEEEEESS-SH---HHHHHHHH----TT-SEEEES
T ss_pred eEECcCccccCEEEEEEeCCH---HHHHHHHH----cCCCEEEEc
Confidence 444444567899999999987 66666665 467777777
No 107
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=38.66 E-value=73 Score=29.52 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCH---HHHHHHHhhhCCCcEEE-ECC
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLV---AKAILDLIPVLNIRKLV-VGT 229 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~v---aeaIle~A~e~~aDLIV-mGS 229 (244)
+++.+.++..++.+...+..+++. .+.+++.+++.++|+|| +|.
T Consensus 39 ~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 86 (349)
T cd08550 39 PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG 86 (349)
T ss_pred HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344444555566654444445432 24567778888999888 664
No 108
>PF13362 Toprim_3: Toprim domain
Probab=38.63 E-value=76 Score=23.41 Aligned_cols=37 Identities=5% Similarity=0.089 Sum_probs=28.6
Q ss_pred CCCCEEEEeEcCCHh--HHHHHHHHHHHhcCCCCeEEEE
Q 026046 108 QEEDIIYVAVGKSQS--SMDALSWTLRHAVNPSTLIFLI 144 (244)
Q Consensus 108 ~~~rkILVAVDgSe~--S~~AL~~Al~lA~~~ga~L~LL 144 (244)
...++|+|+.|.... ..++...+.+.+...+..+.++
T Consensus 39 ~~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~ 77 (96)
T PF13362_consen 39 EPGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIV 77 (96)
T ss_pred CCCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEE
Confidence 378999999999887 8888888877777666555544
No 109
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=38.40 E-value=1.2e+02 Score=25.78 Aligned_cols=42 Identities=5% Similarity=0.176 Sum_probs=30.1
Q ss_pred HhHhhcCCCcEEEEEEEcCCHHHHHHHHh---hhCCCcEEEECCC
Q 026046 189 LDTCSQSKVMVDTVLIESDLVAKAILDLI---PVLNIRKLVVGTT 230 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd~vaeaIle~A---~e~~aDLIVmGS~ 230 (244)
.+.+.+.|++++..++..+..-+.+.+|| ++.+++.||-|+-
T Consensus 22 a~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAG 66 (162)
T COG0041 22 AEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAG 66 (162)
T ss_pred HHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCc
Confidence 33444559999998887765556666665 5778888998865
No 110
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.30 E-value=2.1e+02 Score=26.25 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
..+||.|-+.++-...+||-++.+.-. -+++|.+ |+.... + +
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~~-l~~~i~~--visn~~-----------------~-----------~------- 133 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMGE-LDMDIVG--IISNHP-----------------D-----------L------- 133 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCCC-CCcEEEE--EEECCh-----------------h-----------H-------
Confidence 567999999999999999999875432 2344444 433210 0 0
Q ss_pred HhHhhcCCCcEEEEEEE-c--CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 189 LDTCSQSKVMVDTVLIE-S--DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvve-G--d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.+.+++.|+++..+-.. . ......+++..+++++|+||+...
T Consensus 134 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy 178 (289)
T PRK13010 134 QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARY 178 (289)
T ss_pred HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehh
Confidence 12344567877532111 1 111357889999999999999855
No 111
>PRK00074 guaA GMP synthase; Reviewed
Probab=38.22 E-value=2e+02 Score=28.48 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=28.3
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
.++|+||+.|...|.-++..+.+.. +.+++.+|+-.
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~l---g~~v~av~vd~ 250 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKAI---GDQLTCVFVDH 250 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHh---CCceEEEEEeC
Confidence 3799999999998888877765533 56799999854
No 112
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=38.08 E-value=2.2e+02 Score=23.95 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=22.5
Q ss_pred EEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 113 ILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
++|++.|...|.-++.++.+ .+.+|..+|+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~----~g~~v~~~~~~ 31 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKD----EGYEVHAITFD 31 (201)
T ss_pred CEEEeccHHHHHHHHHHHHH----cCCcEEEEEEE
Confidence 37888888888877766544 25678888875
No 113
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.89 E-value=65 Score=29.07 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=21.4
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEEC
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmG 228 (244)
.+.+.++++.....+...-+..+++.+.+.++|+||+.
T Consensus 34 ~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~ 71 (306)
T PRK11914 34 RLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVV 71 (306)
T ss_pred HHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 34455666654443332225667766666777876664
No 114
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.42 E-value=71 Score=27.16 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=26.7
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
|||+++|-||-.+.++.++.-.+. +.+.+|.++-
T Consensus 2 k~Ill~vtGsiaa~~~~~li~~L~-~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSIAAYKAADLTSQLT-KRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 799999999999999988876664 4577765543
No 115
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=36.66 E-value=67 Score=27.67 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.4
Q ss_pred CEEEEeEcCCHhHHHHH-HHHHHHhcCCCCeEEEEE
Q 026046 111 DIIYVAVGKSQSSMDAL-SWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL-~~Al~lA~~~ga~L~LLH 145 (244)
+||+++|-||-.+.+++ +.. +.+.+.|.+|+++-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll-~~L~~~g~~V~vI~ 35 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQL-EKLVDEGAEVTPIV 35 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHH-HHHHhCcCEEEEEE
Confidence 58999999999999997 654 45555677765443
No 116
>TIGR00930 2a30 K-Cl cotransporter.
Probab=36.14 E-value=5.2e+02 Score=27.82 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=28.0
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
+|||.++.-......+++|-.+. +...-+++.||++.
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~-~~~gl~i~~~v~~~ 613 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFT-KGKGLMICGSVIQG 613 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhc-cCCcEEEEEEEecC
Confidence 69999977667788888887776 34467778898864
No 117
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=35.89 E-value=1.6e+02 Score=26.09 Aligned_cols=35 Identities=9% Similarity=0.057 Sum_probs=29.1
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LL 144 (244)
.++|++|.|+.+..++|...+++.+...|-.+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 47999999999999999999999987667555443
No 118
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=35.42 E-value=3.7e+02 Score=25.04 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=24.6
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
+|+|++.|.-.|.-++.++.+ .+.+|+.+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 589999999888877765543 356788888753
No 119
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=35.18 E-value=3.2e+02 Score=24.16 Aligned_cols=116 Identities=10% Similarity=0.143 Sum_probs=65.1
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCC-CCCC---C----------CCCCC-----CCCCChhHHHH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVK-FVPS---P----------LGKLP-----RNQVNPEQLET 172 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~-~~~~---~----------~g~~~-----~~~~~~e~~~~ 172 (244)
|+++...|.+.|..|+.+|.+. . .-++|+++++... .+.+ + +| +| ......+..+.
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~alg-ipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---EVISLVNIMPENEESYMFHGVNAHLTDLQAESIG-IPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---eeEEEEEEecCCCCcccccccCHHHHHHHHHHcC-CCeEEeecCCCccHHHHH
Confidence 5778899999999999999877 3 4567888887542 1110 0 01 11 00000111111
Q ss_pred HHHHHHHH-----------HHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 173 FMAQETGK-----------RRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 173 ~~~~~~e~-----------a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
+.+..++. .+.......+.|.+.|+++-.= +.+.+. +.+++..-+.+++.||+.....||
T Consensus 77 l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl~~~~P-LW~~~~-~~ll~e~i~~G~~aiIv~v~a~gL 147 (223)
T TIGR00290 77 LKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGLKSFAP-LWHRDP-EKLMEEFVEEKFEARIIAVAAEGL 147 (223)
T ss_pred HHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCCEEecc-ccCCCH-HHHHHHHHHcCCeEEEEEEecCCC
Confidence 11111100 0111244556777777776433 346664 677776668899999988775555
No 120
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=34.80 E-value=1.1e+02 Score=28.06 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=48.3
Q ss_pred EEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhH
Q 026046 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT 191 (244)
Q Consensus 112 kILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~ 191 (244)
||-|.+.-...+..-++-|-++..+++.. .++|+.-|..+ . .+.+..+.++..+
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf-----~--------------------~e~EttIskI~~l 57 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNF-----M--------------------SEQETTISKIVSL 57 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTG-----G--------------------GCHHHHHHHHHGG
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcc-----c--------------------chHHHHHHHHHHh
Confidence 45566665455555555555555555554 88888744321 0 1233446677777
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+.+..+++- ++..+.+-.-+-.+.+++.+.|+|.+..-
T Consensus 58 AdDp~mKaI-Vv~q~vpGt~~af~kIkekRpDIl~ia~~ 95 (275)
T PF12683_consen 58 ADDPDMKAI-VVSQAVPGTAEAFRKIKEKRPDILLIAGE 95 (275)
T ss_dssp GG-TTEEEE-EEE-SS---HHHHHHHHHH-TTSEEEESS
T ss_pred ccCCCccEE-EEeCCCcchHHHHHHHHhcCCCeEEEcCC
Confidence 776666552 33344443344567788889998888655
No 121
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.08 E-value=99 Score=26.41 Aligned_cols=45 Identities=7% Similarity=0.004 Sum_probs=30.8
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHH
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLH 237 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf 237 (244)
.++..|+++.. +-.+.+.+.|++.+++.++|+|.|... ...+..+
T Consensus 107 ~l~~~G~~vi~--LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~ 152 (197)
T TIGR02370 107 MLRANGFDVID--LGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ 152 (197)
T ss_pred HHHhCCcEEEE--CCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHH
Confidence 34556877642 222334699999999999999999877 4444333
No 122
>PRK10799 metal-binding protein; Provisional
Probab=33.76 E-value=55 Score=29.02 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=20.3
Q ss_pred cEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 198 MVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 198 ~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+++.+.+-++. +...++.|.+.++|++|-|--
T Consensus 164 ~i~rVAi~~Gs-G~~~i~~a~~~gaD~~ITGd~ 195 (247)
T PRK10799 164 VVQRVAWCTGG-GQSFIDSAARFGVDAFITGEV 195 (247)
T ss_pred cccEEEEECCc-hHHHHHHHHHcCCCEEEECCc
Confidence 34444444444 445666667788899888865
No 123
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=33.64 E-value=51 Score=26.17 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=33.7
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
...+|+|+-|....|....+.++.-+...|.+|+.+...+.
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~t 79 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPT 79 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-H
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCc
Confidence 46899999999999999999888888888999998886553
No 124
>PRK08576 hypothetical protein; Provisional
Probab=33.59 E-value=4.1e+02 Score=26.01 Aligned_cols=33 Identities=15% Similarity=-0.052 Sum_probs=25.8
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEe
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVF 147 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi 147 (244)
.+|+|++.|...|.-+|..+.+... .+.++|+.
T Consensus 235 ~rVvVafSGGKDStvLL~La~k~~~----~V~aV~iD 267 (438)
T PRK08576 235 WTVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVD 267 (438)
T ss_pred CCEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeC
Confidence 3899999999999999987776542 37777764
No 125
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=33.40 E-value=3.5e+02 Score=25.93 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=26.4
Q ss_pred EEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 113 IYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 113 ILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
|+|++.|.-.|--++.|+.+.. +.+|+.+|+.-
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---~~eV~av~~d~ 33 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---GYEVIAVTADV 33 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---CCeEEEEEEEC
Confidence 6899999999999999886542 45899999864
No 126
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=32.70 E-value=1.7e+02 Score=20.26 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=28.0
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEE-CCC-CCCh--HHHHhhh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVV-GTT-KSSL--RLHQKLA 241 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVm-GS~-r~Gl--rRf~~~~ 241 (244)
+.+.++.++.+-+..++....-+.......+=.|++ |.. -.|| .++.++|
T Consensus 19 L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~~~~~G~~~~~~~~~~ 72 (72)
T TIGR02194 19 LEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGDLSWSGFRPDKLKALA 72 (72)
T ss_pred HHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCCcEEeccCHHHHHhcC
Confidence 345688887665554443333333223334556888 664 5777 5676654
No 127
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.61 E-value=1.2e+02 Score=27.73 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHhHhhcCCCcEEEEEEEcCCH--HHHHHHHhhhCCCcEEEECCCCCChHHHHhhh
Q 026046 185 LQKFLDTCSQSKVMVDTVLIESDLV--AKAILDLIPVLNIRKLVVGTTKSSLRLHQKLA 241 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvveGd~v--aeaIle~A~e~~aDLIVmGS~r~GlrRf~~~~ 241 (244)
+++|.+.|++.|+.- +++..-|+ ++.++++++++++|.|-+-+-...-+|+++.+
T Consensus 111 ie~F~~~~~~~GvdG--livpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~ 167 (265)
T COG0159 111 IEKFLRRAKEAGVDG--LLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIA 167 (265)
T ss_pred HHHHHHHHHHcCCCE--EEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 456667777777655 44444332 35578889999999999988866666666554
No 128
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=32.45 E-value=1.2e+02 Score=22.86 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=32.1
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhh
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLA 241 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~ 241 (244)
+++.+.++++|++++.... +. ..+-... .++|+|+++.+ +.-+.++++.+
T Consensus 17 ~ki~~~~~~~~~~~~v~~~---~~-~~~~~~~--~~~Diil~~Pqv~~~~~~i~~~~ 67 (96)
T cd05564 17 KKMKKAAEKRGIDAEIEAV---PE-SELEEYI--DDADVVLLGPQVRYMLDEVKKKA 67 (96)
T ss_pred HHHHHHHHHCCCceEEEEe---cH-HHHHHhc--CCCCEEEEChhHHHHHHHHHHHh
Confidence 3455566777887653332 33 3344444 46799999999 88778887643
No 129
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=32.41 E-value=1.1e+02 Score=26.15 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=30.4
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL 236 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR 236 (244)
.+...|+++. .+-..-| .+.|++.+.++++|+|.+... ...+..
T Consensus 105 ~l~~~G~~vi-~lG~~~p-~~~l~~~~~~~~~d~v~lS~~~~~~~~~ 149 (201)
T cd02070 105 MLEANGFEVI-DLGRDVP-PEEFVEAVKEHKPDILGLSALMTTTMGG 149 (201)
T ss_pred HHHHCCCEEE-ECCCCCC-HHHHHHHHHHcCCCEEEEeccccccHHH
Confidence 3455688772 1222345 599999999999999999886 444433
No 130
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=31.90 E-value=1.3e+02 Score=21.00 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLI 141 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L 141 (244)
.++|+++.|..+..+++...+.+.+...+..+
T Consensus 43 ~~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~ 74 (79)
T cd01029 43 ARTVILAFDNDEAGKKAAARALELLLALGGRV 74 (79)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEE
Confidence 39999999999988888877777776444333
No 131
>PRK12569 hypothetical protein; Provisional
Probab=31.44 E-value=1.3e+02 Score=27.27 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
..++.++++|+..+..| -+.|..+-. ..+|.-. -.++++++. +....++.-+..+|...|.++.-+-.
T Consensus 47 ~~M~~tv~lA~~~~V~I---GAHPsyPD~-~gFGRr~-m~~s~~el~-------~~v~yQigaL~~~~~~~g~~l~hVKP 114 (245)
T PRK12569 47 NIMRRTVELAKAHGVGI---GAHPGFRDL-VGFGRRH-INASPQELV-------NDVLYQLGALREFARAHGVRLQHVKP 114 (245)
T ss_pred HHHHHHHHHHHHcCCEe---ccCCCCCcC-CCCCCCC-CCCCHHHHH-------HHHHHHHHHHHHHHHHcCCeeEEecC
Confidence 55666677777666443 334432110 1223100 013344333 34444566677778888888875543
Q ss_pred E---------cCCHHHHHHHHhhhCCCcEEEECCCCCChHH
Q 026046 205 E---------SDLVAKAILDLIPVLNIRKLVVGTTKSSLRL 236 (244)
Q Consensus 205 e---------Gd~vaeaIle~A~e~~aDLIVmGS~r~GlrR 236 (244)
+ ....+++|++.++..+.++++++...+-+.+
T Consensus 115 HGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s~~~~ 155 (245)
T PRK12569 115 HGALYMHAARDEALARLLVEALARLDPLLILYCMDGSATER 155 (245)
T ss_pred CHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCcHHHH
Confidence 3 3567899999999999999999966554433
No 132
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=31.40 E-value=3.7e+02 Score=25.34 Aligned_cols=31 Identities=32% Similarity=0.238 Sum_probs=19.7
Q ss_pred cCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEE
Q 026046 194 QSKVMVDTVLIESDLVAKAILDLIPVLNIRKLV 226 (244)
Q Consensus 194 ~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIV 226 (244)
..|.++. ++..++++.+|.-.....++|+++
T Consensus 175 ~~Gari~--Li~DGDVa~ai~~~~~~s~vD~~~ 205 (321)
T TIGR00330 175 QLGVRVF--AIPDGDVAASILTCMPDSEVDVLY 205 (321)
T ss_pred HcCCeEE--EeccccHHHHHHHhCCCCCeeEEE
Confidence 4466653 344445677777777778888654
No 133
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=30.87 E-value=4.4e+02 Score=24.48 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=24.3
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEec
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFP 148 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~ 148 (244)
-.++||+.|...|--++..+... .+-.+.++|+-.
T Consensus 60 yD~iV~lSGGkDSs~la~ll~~~---~gl~~l~vt~~~ 94 (343)
T TIGR03573 60 YDCIIGVSGGKDSTYQAHVLKKK---LGLNPLLVTVDP 94 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHHHH---hCCceEEEEECC
Confidence 35999999999888887655433 245566677753
No 134
>PRK05406 LamB/YcsF family protein; Provisional
Probab=30.64 E-value=1.4e+02 Score=27.09 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEE
Q 026046 125 DALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLI 204 (244)
Q Consensus 125 ~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvv 204 (244)
..++.++++|+..+..| -+.|..+-. ..+|.-.- .++++++. +....++.-+..+|+..|.++.-+-.
T Consensus 44 ~~M~~tv~lA~~~gV~I---GAHPgypD~-~gFGRR~m-~~s~~el~-------~~v~yQigAL~~~a~~~g~~l~hVKP 111 (246)
T PRK05406 44 AVMRRTVRLAKENGVAI---GAHPGYPDL-EGFGRRNM-DLSPEELY-------ALVLYQIGALQAIARAAGGRVSHVKP 111 (246)
T ss_pred HHHHHHHHHHHHcCCeE---ccCCCCCcc-CCCCCCCC-CCCHHHHH-------HHHHHHHHHHHHHHHHcCCeeEEeCc
Confidence 55666777777666443 334432211 12231000 13344333 34444566677778888888875544
Q ss_pred Ec---------CCHHHHHHHHhhhCCCcEEEECCCCCChHH
Q 026046 205 ES---------DLVAKAILDLIPVLNIRKLVVGTTKSSLRL 236 (244)
Q Consensus 205 eG---------d~vaeaIle~A~e~~aDLIVmGS~r~GlrR 236 (244)
+| ...+++|++.++..+.+++++|-..+-+.+
T Consensus 112 HGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~s~~~~ 152 (246)
T PRK05406 112 HGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAGSELIR 152 (246)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCChHHHH
Confidence 43 567899999999999999999966443433
No 135
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=3.6e+02 Score=26.56 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=50.7
Q ss_pred CCCEEEEeEcCCH-hHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQ-SSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQK 187 (244)
Q Consensus 109 ~~rkILVAVDgSe-~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~ 187 (244)
+..-|||+=|..- .|.-.|+-+.++|.+. .+|||--+-+ ..++
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES---------------~~Qi----------------- 135 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEES---------------LQQI----------------- 135 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcC---------------HHHH-----------------
Confidence 3355666555332 5788899888888654 7788863321 1111
Q ss_pred HHhHhhcCCCcEEEEEE-EcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 188 FLDTCSQSKVMVDTVLI-ESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 188 ~~~~~~~~gV~ve~vvv-eGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+-.+.+.++....+.+ .-.+ -+.|++.+++.++|++|+-|=
T Consensus 136 -klRA~RL~~~~~~l~l~aEt~-~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 136 -KLRADRLGLPTNNLYLLAETN-LEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred -HHHHHHhCCCccceEEehhcC-HHHHHHHHHhcCCCEEEEecc
Confidence 1122233443333333 3345 499999999999999999763
No 136
>PRK13337 putative lipid kinase; Reviewed
Probab=30.21 E-value=1.6e+02 Score=26.63 Aligned_cols=44 Identities=7% Similarity=-0.078 Sum_probs=25.8
Q ss_pred HHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
++.+.+.+.+++++....+...-+..+++.+.+.+.|+||+..-
T Consensus 23 ~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GG 66 (304)
T PRK13337 23 DVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGG 66 (304)
T ss_pred HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 33444555677776555543333577776666667787776443
No 137
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=30.02 E-value=1.8e+02 Score=24.66 Aligned_cols=58 Identities=7% Similarity=0.037 Sum_probs=33.0
Q ss_pred HHHHHhHhhcCCCcEEEEEEEcCC-HHHHHHHHhhh------------------CCCcEEEECCC-C-CCh-HHHHhhhh
Q 026046 185 LQKFLDTCSQSKVMVDTVLIESDL-VAKAILDLIPV------------------LNIRKLVVGTT-K-SSL-RLHQKLAR 242 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvveGd~-vaeaIle~A~e------------------~~aDLIVmGS~-r-~Gl-rRf~~~~~ 242 (244)
++.+.+.++..|.+++.+.+.+.+ ..-..|..+.. ..+|.||+|+. . +++ ..+|...|
T Consensus 20 ~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiD 99 (207)
T COG0655 20 AEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSPVYFGNVSAQMKAFID 99 (207)
T ss_pred HHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCCeecCCchHHHHHHHh
Confidence 444444555568888766665431 01233333332 23799999999 5 555 56666554
No 138
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=30.02 E-value=3.8e+02 Score=23.52 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=51.2
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLD 190 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~ 190 (244)
+||.|=+.|+-.-.+|+--|...- ..+++|.+|-.-.+.. ...+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~-~~~a~i~~Visd~~~A-----------------------------------~~le 44 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGG-KLDAEIVAVISDKADA-----------------------------------YALE 44 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcC-CCCcEEEEEEeCCCCC-----------------------------------HHHH
Confidence 478888888887788887777632 2245555443322110 0112
Q ss_pred HhhcCCCcEEEEEEEcCC----HHHHHHHHhhhCCCcEEEECCC
Q 026046 191 TCSQSKVMVDTVLIESDL----VAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~----vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.+++.|++....-...-+ ...+|++..++.++|+||+.-.
T Consensus 45 rA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 45 RAAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcch
Confidence 234567776433332222 4578999999999999999866
No 139
>PRK05920 aromatic acid decarboxylase; Validated
Probab=29.64 E-value=1.2e+02 Score=26.44 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=27.5
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
..+||+++|-||-.+.++++..-.+. +.|.+|+++-
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~-~~g~~V~vi~ 37 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLL-AADYEVHLVI 37 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 34899999999999999999776664 4566655554
No 140
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=29.36 E-value=88 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 122 SSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 122 ~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
.+.+||+-|++....++.++.++.++..
T Consensus 3 ~aA~Al~eal~~~~~~~~~v~v~D~~~~ 30 (169)
T PF06925_consen 3 SAARALAEALERRRGPDAEVEVVDFLEE 30 (169)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEehHHh
Confidence 4567888888765446788888888764
No 141
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.25 E-value=1e+02 Score=28.13 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=23.1
Q ss_pred EEEEEcCCHHHHHHHHhhhC-------CCcEEEECCCCCCh
Q 026046 201 TVLIESDLVAKAILDLIPVL-------NIRKLVVGTTKSSL 234 (244)
Q Consensus 201 ~vvveGd~vaeaIle~A~e~-------~aDLIVmGS~r~Gl 234 (244)
...+.|...+..|++..+.. ++|+|||+.-++++
T Consensus 48 p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~ 88 (319)
T PF02601_consen 48 PASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI 88 (319)
T ss_pred eccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh
Confidence 34557877778887555433 49999999665544
No 142
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.20 E-value=4.1e+02 Score=24.18 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
..+||.|-+.++-...++|-.+.+.- .-+++|.+ |+.... + +.
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~g-~l~~~i~~--visn~~-----------------~-----------~~------ 125 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYSG-ELDAEIAL--VISNHE-----------------D-----------LR------ 125 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHcC-CCCcEEEE--EEEcCh-----------------h-----------HH------
Confidence 45799999999999999998876442 22344444 333210 0 00
Q ss_pred HhHhhcCCCcEEEEEEEc---CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 189 LDTCSQSKVMVDTVLIES---DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveG---d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
..+++.|+++...-... ......+++..+++++|+||+...
T Consensus 126 -~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 126 -SLVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred -HHHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCc
Confidence 11345577774322111 112357888888999999999865
No 143
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.16 E-value=1.2e+02 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=24.0
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhh--CCCcEEEEC
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPV--LNIRKLVVG 228 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e--~~aDLIVmG 228 (244)
+.+.|+++....+-.|.. +.|.+..++ .++|+||+-
T Consensus 36 l~~~G~~v~~~~~v~Dd~-~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 36 LEEAGFNVSRLGIVPDDP-EEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHCCCeEEEEeecCCCH-HHHHHHHHHHHhCCCEEEEC
Confidence 334578877666667774 667665543 379999983
No 144
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=28.96 E-value=1.7e+02 Score=24.62 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHh---hhCCCcEEEECCC
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLI---PVLNIRKLVVGTT 230 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A---~e~~aDLIVmGS~ 230 (244)
+++...++..|++++..+.--+.-.+.+.+++ ++.+++.||.++-
T Consensus 15 ~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG 62 (156)
T TIGR01162 15 KKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAG 62 (156)
T ss_pred HHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34444555568999887775544345565555 4568999998876
No 145
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.66 E-value=4.4e+02 Score=23.79 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEE
Q 026046 121 QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVD 200 (244)
Q Consensus 121 e~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve 200 (244)
+.-..++++|..+.. .+.++...+.+.+... | .++- .+ ..+.+..+.+.|.+.|+.+-
T Consensus 38 e~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs-~--~s~~---G~---------------g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 38 ESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTS-P--YSFQ---GL---------------GEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEeeecCCCC-C--CccC---Cc---------------HHHHHHHHHHHHHHcCCCEE
Confidence 445667777766654 6788889998886543 2 1110 00 02224445555677799886
Q ss_pred EEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhh
Q 026046 201 TVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLA 241 (244)
Q Consensus 201 ~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~ 241 (244)
..+..-.. ++++.+. +|++-+|++ -..+.-++.++
T Consensus 96 te~~d~~~-----~~~l~~~-vd~~kIga~~~~n~~LL~~~a 131 (266)
T PRK13398 96 TEVMDTRD-----VEEVADY-ADMLQIGSRNMQNFELLKEVG 131 (266)
T ss_pred EeeCChhh-----HHHHHHh-CCEEEECcccccCHHHHHHHh
Confidence 65543333 3444455 799999999 66664444443
No 146
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.36 E-value=4.5e+02 Score=23.89 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred cccceeccCCCCC---CCCCccchhhhc--cCcce--eeeccCCCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeE
Q 026046 69 SQLLSEINDGNGM---PMPLAPIKEEIE--SSFFS--FDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLI 141 (244)
Q Consensus 69 ~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~f~--~~~~~~~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L 141 (244)
.+++|.+...-.. |..+..++++.. +.-+. +.+++ +...+||.|-+.++-...+||-.+.+.- ..+++|
T Consensus 44 ~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~l~i~l~~---~~~~~ri~vl~Sg~gsnl~al~~~~~~~-~~~~~i 119 (286)
T PRK06027 44 ETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFEMDWRLLD---SAERKRVVILVSKEDHCLGDLLWRWRSG-ELPVEI 119 (286)
T ss_pred CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhCCEEEEcc---cccCcEEEEEEcCCCCCHHHHHHHHHcC-CCCcEE
Confidence 3346766553233 233566776643 22222 33333 2255799999999988889888776442 234555
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEEE---cCCHHHHHHHHhh
Q 026046 142 FLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIE---SDLVAKAILDLIP 218 (244)
Q Consensus 142 ~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvve---Gd~vaeaIle~A~ 218 (244)
.++-...+ . + ...+++.|+++..+-.. -......+++..+
T Consensus 120 ~~visn~~-------------------~-----------~-------~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 162 (286)
T PRK06027 120 AAVISNHD-------------------D-----------L-------RSLVERFGIPFHHVPVTKETKAEAEARLLELID 162 (286)
T ss_pred EEEEEcCh-------------------h-----------H-------HHHHHHhCCCEEEeccCccccchhHHHHHHHHH
Confidence 55443211 0 0 11144567877532111 1122357888889
Q ss_pred hCCCcEEEECCC
Q 026046 219 VLNIRKLVVGTT 230 (244)
Q Consensus 219 e~~aDLIVmGS~ 230 (244)
++++|+||+...
T Consensus 163 ~~~~Dlivlagy 174 (286)
T PRK06027 163 EYQPDLVVLARY 174 (286)
T ss_pred HhCCCEEEEecc
Confidence 999999999865
No 147
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=28.35 E-value=2e+02 Score=26.99 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 184 lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
++..+...+++.|.++.....+- +.++++++.++++.+++|.|+.++
T Consensus 15 fFk~~I~eL~~~GheV~it~R~~----~~~~~LL~~yg~~y~~iG~~g~~~ 61 (335)
T PF04007_consen 15 FFKNIIRELEKRGHEVLITARDK----DETEELLDLYGIDYIVIGKHGDSL 61 (335)
T ss_pred HHHHHHHHHHhCCCEEEEEEecc----chHHHHHHHcCCCeEEEcCCCCCH
Confidence 45566666777788876555543 455666778999999999995444
No 148
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=28.25 E-value=1.4e+02 Score=26.02 Aligned_cols=46 Identities=13% Similarity=-0.047 Sum_probs=31.6
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQK 239 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~ 239 (244)
+...|+++. ..--+.+.+.|++.+.++++|+|.|... ......++.
T Consensus 112 l~~~G~~Vi--~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~ 158 (213)
T cd02069 112 LSNNGYEVI--DLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVE 158 (213)
T ss_pred HHhCCCEEE--ECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHH
Confidence 445687763 2222334699999999999999999877 555544443
No 149
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=28.15 E-value=4.6e+02 Score=24.59 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=19.0
Q ss_pred cCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEE
Q 026046 194 QSKVMVDTVLIESDLVAKAILDLIPVLNIRKLV 226 (244)
Q Consensus 194 ~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIV 226 (244)
..|.++. ++..++++.+|.-.....++|+++
T Consensus 175 ~~Gari~--Li~DGDV~~ai~~~~~~s~vD~~~ 205 (309)
T cd01516 175 EAGARIK--LIPDGDVAAAIATALPGSGVDVLM 205 (309)
T ss_pred HcCCeEE--EeccccHHHHHHHhCCCCCeeEEE
Confidence 4466553 344445667776666777888654
No 150
>PRK13055 putative lipid kinase; Reviewed
Probab=28.04 E-value=1.8e+02 Score=26.83 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=29.5
Q ss_pred HHHHHhHhhcCCCcEEEEEEEcC-CHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 185 LQKFLDTCSQSKVMVDTVLIESD-LVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvveGd-~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
+.++.+.+...+++++....... .-++.+++.+...++|+||+..--+.+
T Consensus 22 ~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 22 VADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred HHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 34445556667787765544422 125677777767778888775443333
No 151
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.89 E-value=47 Score=32.36 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCHHHHHHHHhhhCCCcEEEECCC---CCCh-HHHHh
Q 026046 207 DLVAKAILDLIPVLNIRKLVVGTT---KSSL-RLHQK 239 (244)
Q Consensus 207 d~vaeaIle~A~e~~aDLIVmGS~---r~Gl-rRf~~ 239 (244)
... +.|+++|+++++||+|+|-- --|+ ..|++
T Consensus 50 ~~~-~~lv~fA~~~~idl~vVGPE~pL~~GvvD~l~~ 85 (428)
T COG0151 50 TDH-EALVAFAKEKNVDLVVVGPEAPLVAGVVDALRA 85 (428)
T ss_pred cCH-HHHHHHHHHcCCCEEEECCcHHHhhhhHHHHHH
Confidence 353 99999999999999999976 2454 44443
No 152
>PF13155 Toprim_2: Toprim-like
Probab=27.59 E-value=1.5e+02 Score=21.51 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.1
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCC
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPS 138 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~g 138 (244)
++++|++++|-.+..+.+.+...+.....+
T Consensus 46 ~~~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 46 PYKKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 448899999999999999999887776544
No 153
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.50 E-value=1.8e+02 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhCCCcEEEECCC
Q 026046 209 VAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 209 vaeaIle~A~e~~aDLIVmGS~ 230 (244)
-.+.|++.+++.++|+|++|--
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECC
Confidence 3689999999999999999865
No 154
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.42 E-value=4.4e+02 Score=24.01 Aligned_cols=121 Identities=8% Similarity=0.040 Sum_probs=68.1
Q ss_pred cccceeccCCCCCC--CCCccchhhhc--cC--cceeeeccCCCCCCCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEE
Q 026046 69 SQLLSEINDGNGMP--MPLAPIKEEIE--SS--FFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIF 142 (244)
Q Consensus 69 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~~--~f~~~~~~~~~~~~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~ 142 (244)
.+.+|.+..--..| ++...++++.. +. -..+.+++ ....+||.|-+.++-...+||-.+.+.-. .+.+|.
T Consensus 45 ~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~l~i~i~~---~~~~~ri~vl~Sg~g~nl~al~~~~~~~~-~~~~i~ 120 (286)
T PRK13011 45 LSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFGMQWELHD---PAARPKVLIMVSKFDHCLNDLLYRWRIGE-LPMDIV 120 (286)
T ss_pred CCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhCcEEEEee---cccCceEEEEEcCCcccHHHHHHHHHcCC-CCcEEE
Confidence 55666654332222 44666777633 11 22333443 22457999999999888999988865532 345555
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhHhhcCCCcEEEEEEEcC---CHHHHHHHHhhh
Q 026046 143 LIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESD---LVAKAILDLIPV 219 (244)
Q Consensus 143 LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~~~~~~~~gV~ve~vvveGd---~vaeaIle~A~e 219 (244)
++-.-.+ + +...+++.|+++..+-.... .....+++..++
T Consensus 121 ~visn~~-------------------~------------------~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~ 163 (286)
T PRK13011 121 GVVSNHP-------------------D------------------LEPLAAWHGIPFHHFPITPDTKPQQEAQVLDVVEE 163 (286)
T ss_pred EEEECCc-------------------c------------------HHHHHHHhCCCEEEeCCCcCchhhhHHHHHHHHHH
Confidence 5432111 0 01113455787753211111 123467888889
Q ss_pred CCCcEEEECCC
Q 026046 220 LNIRKLVVGTT 230 (244)
Q Consensus 220 ~~aDLIVmGS~ 230 (244)
+++|+||+...
T Consensus 164 ~~~Dlivlagy 174 (286)
T PRK13011 164 SGAELVVLARY 174 (286)
T ss_pred hCcCEEEEeCh
Confidence 99999999855
No 155
>PRK10329 glutaredoxin-like protein; Provisional
Probab=27.15 E-value=2.3e+02 Score=20.49 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=28.6
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCCh--HHHHhhh
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSL--RLHQKLA 241 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~Gl--rRf~~~~ 241 (244)
+.+.|++++.+-+..++.+..-+..-....+=.|++|.. ..|| .++++++
T Consensus 21 L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~ 73 (81)
T PRK10329 21 MESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSGFRPDMINRLH 73 (81)
T ss_pred HHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEecCCHHHHHHHH
Confidence 345689888666554442222222212234556788877 6788 6677665
No 156
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.82 E-value=4.3e+02 Score=23.06 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+++++...+++..+...+ .|+--.+.|- .+.+.++|.+|+|+.
T Consensus 155 ~~l~~~~~~~~~~~~I~v-dGGI~~eni~-~l~~aGAd~vVvGSa 197 (220)
T PRK08883 155 RAVRKMIDESGRDIRLEI-DGGVKVDNIR-EIAEAGADMFVAGSA 197 (220)
T ss_pred HHHHHHHHhcCCCeeEEE-ECCCCHHHHH-HHHHcCCCEEEEeHH
Confidence 334444444565554344 4544335554 445689999999987
No 157
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.42 E-value=1.5e+02 Score=24.66 Aligned_cols=44 Identities=5% Similarity=0.067 Sum_probs=27.2
Q ss_pred HHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhh---CCCcEEEECCC
Q 026046 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPV---LNIRKLVVGTT 230 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e---~~aDLIVmGS~ 230 (244)
++...|+..|+.++..+.-.+.-.+.+.+++++ .+++.||.++-
T Consensus 18 ~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG 64 (150)
T PF00731_consen 18 EAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAG 64 (150)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECC
Confidence 444455556899988777666545777777655 46788887765
No 158
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.25 E-value=1.5e+02 Score=23.23 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=31.4
Q ss_pred hHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhhc
Q 026046 190 DTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLARS 243 (244)
Q Consensus 190 ~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~~ 243 (244)
+.++.+|.+++.... + ...+-++.. ++|.+.+|-. +--+.+|++.+..
T Consensus 23 ~aA~~kg~~~~I~A~---s-~~e~~~~~~--~~DvvLlGPQv~y~~~~~~~~~~~ 71 (102)
T COG1440 23 KAAESKGKDVTIEAY---S-ETELSEYID--NADVVLLGPQVRYMLKQLKEAAEE 71 (102)
T ss_pred HHHHhCCCceEEEEe---c-hhHHHHhhh--cCCEEEEChHHHHHHHHHHHHhcc
Confidence 334456777764433 3 244444444 8999999998 8777888877653
No 159
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.24 E-value=3.9e+02 Score=22.42 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=25.6
Q ss_pred cEEEEEEEcCCHHHHHHHHhhhCCC--cEEEECCC
Q 026046 198 MVDTVLIESDLVAKAILDLIPVLNI--RKLVVGTT 230 (244)
Q Consensus 198 ~ve~vvveGd~vaeaIle~A~e~~a--DLIVmGS~ 230 (244)
+++.++..++..+..+++.+++.+. |+-|+|--
T Consensus 187 ~~~ai~~~~d~~a~g~~~~l~~~g~~~dv~v~g~d 221 (275)
T cd06317 187 DIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGAN 221 (275)
T ss_pred CccEEEECCCcHHHHHHHHHHhcCCcCCcEEEEeC
Confidence 4566777777778888999988888 88888744
No 160
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.08 E-value=1.4e+02 Score=27.53 Aligned_cols=43 Identities=2% Similarity=-0.021 Sum_probs=26.1
Q ss_pred HHHHHhHhhcCCCcEEEEEEEcCCHHH---HHHHHhhhCCCcEEEE
Q 026046 185 LQKFLDTCSQSKVMVDTVLIESDLVAK---AILDLIPVLNIRKLVV 227 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvveGd~vae---aIle~A~e~~aDLIVm 227 (244)
++++...++..++.+....+.++|.-+ .+++.+++.++|+||-
T Consensus 38 ~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 38 GAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred HHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEE
Confidence 444445555667776544455655434 5567777889997763
No 161
>PRK10638 glutaredoxin 3; Provisional
Probab=26.01 E-value=2.5e+02 Score=19.97 Aligned_cols=55 Identities=7% Similarity=0.049 Sum_probs=33.8
Q ss_pred HhHhhcCCCcEEEEEEEcCC-HHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhhc
Q 026046 189 LDTCSQSKVMVDTVLIESDL-VAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLARS 243 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd~-vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~~ 243 (244)
+..+...+++++.+-+..++ ..+.+.+......+=.|++|.. -+|+..+.++.++
T Consensus 19 ~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 19 KALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred HHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 33444567887765443333 3355556555555667888877 7888877776543
No 162
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=25.99 E-value=4.6e+02 Score=23.11 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 179 GKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 179 e~a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+-..++|...-+++...|+=+-..+ ....+ ++||++.++.+...-+.=.|
T Consensus 145 ~v~d~ll~~v~~iLSp~Gv~Ylv~~-~~N~p-~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 145 EVTDRLLPQVPDILSPRGVFYLVAL-RANKP-KEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHhhhhhhcCcCceEEeeeh-hhcCH-HHHHHHHhhcccceeEEEEE
Confidence 3445555555566666777664333 44444 89999888777665554444
No 163
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=25.61 E-value=3e+02 Score=24.25 Aligned_cols=51 Identities=12% Similarity=-0.079 Sum_probs=27.6
Q ss_pred hHhhcCCCcEEEEEE--E-cCCHHHHHHHHhhhCCCcEEEECCCCCChHHHHhhh
Q 026046 190 DTCSQSKVMVDTVLI--E-SDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLA 241 (244)
Q Consensus 190 ~~~~~~gV~ve~vvv--e-Gd~vaeaIle~A~e~~aDLIVmGS~r~GlrRf~~~~ 241 (244)
+.+++.|+++..... . ..+. ..++..+++.++|.|+++.......+|-+.+
T Consensus 156 ~~~~~~G~~v~~~~~~~~~~~d~-~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~ 209 (336)
T cd06360 156 EAFTEAGGKIVKELWVPFGTSDF-ASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY 209 (336)
T ss_pred HHHHHcCCEEEEEEecCCCCcch-HHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence 334445665543221 1 2343 5666666777888888876644444444433
No 164
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.51 E-value=2.3e+02 Score=21.88 Aligned_cols=37 Identities=5% Similarity=-0.171 Sum_probs=26.8
Q ss_pred HhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCc-EEEECCC
Q 026046 191 TCSQSKVMVDTVLIESDLVAKAILDLIPVLNIR-KLVVGTT 230 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aD-LIVmGS~ 230 (244)
.+...|+.++.... ... ...+++|++.++. +||+|..
T Consensus 50 ~LR~~gi~v~~d~~--~sl-~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 50 ELRELGFSVKYDDS--GSI-GRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred HHHHCCCEEEEeCC--CCH-HHHHHHhHhcCCCEEEEECcC
Confidence 34456888876543 564 8888999999999 6666865
No 165
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=25.20 E-value=62 Score=26.27 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHHHHHhhhCCCcEEEECCC
Q 026046 210 AKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 210 aeaIle~A~e~~aDLIVmGS~ 230 (244)
.+.|.+++++++++.||||=.
T Consensus 43 ~~~l~~~i~~~~i~~iVvGlP 63 (138)
T PRK00109 43 WDRLEKLIKEWQPDGLVVGLP 63 (138)
T ss_pred HHHHHHHHHHhCCCEEEEecc
Confidence 588999999999999999933
No 166
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.12 E-value=2.1e+02 Score=25.86 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=11.5
Q ss_pred HHHhhhCCCcEEEECCCCCChHHHH
Q 026046 214 LDLIPVLNIRKLVVGTTKSSLRLHQ 238 (244)
Q Consensus 214 le~A~e~~aDLIVmGS~r~GlrRf~ 238 (244)
++.+++++++.|.+=+......|++
T Consensus 137 ~~~~~~~gi~~I~lv~PtT~~eri~ 161 (263)
T CHL00200 137 ISVCNLYNIELILLIAPTSSKSRIQ 161 (263)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHH
Confidence 3444555555555544433333333
No 167
>PHA02031 putative DnaG-like primase
Probab=23.96 E-value=1.3e+02 Score=27.60 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=29.0
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLH 145 (244)
.++|+++.|++....+|...|++++...+-.+.++.
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~ 241 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVII 241 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 489999999999999999999998876565555444
No 168
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=23.95 E-value=59 Score=26.31 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred CHHHHHHHHhhhCCCcEEEECCC
Q 026046 208 LVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 208 ~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
...+.|.+++++++++.||||-.
T Consensus 38 ~~~~~l~~li~~~~i~~iVvGlP 60 (135)
T PF03652_consen 38 KDIEELKKLIEEYQIDGIVVGLP 60 (135)
T ss_dssp CCHHHHHHHHHHCCECEEEEEEE
T ss_pred hHHHHHHHHHHHhCCCEEEEeCC
Confidence 44699999999999999999976
No 169
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=23.78 E-value=1.9e+02 Score=26.90 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHhhcCCCcEEEEEEE-cCCHHHHHHHHhhhCCCc-EEEECCC-CCChHHHHhhhhc
Q 026046 181 RRQLLQKFLDTCSQSKVMVDTVLIE-SDLVAKAILDLIPVLNIR-KLVVGTT-KSSLRLHQKLARS 243 (244)
Q Consensus 181 a~~lLe~~~~~~~~~gV~ve~vvve-Gd~vaeaIle~A~e~~aD-LIVmGS~-r~GlrRf~~~~~~ 243 (244)
.++..+.+...+....+.....+.. -....+++-++|.+ +| +||+|+. .+.-.||...|..
T Consensus 173 t~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~--~Dl~iVVG~~nSSNs~rL~eiA~~ 236 (294)
T COG0761 173 TAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPE--VDLVIVVGSKNSSNSNRLAEIAKR 236 (294)
T ss_pred HHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhc--CCEEEEECCCCCccHHHHHHHHHH
Confidence 3444444444454322333333332 23445777777775 67 5677888 7777888887753
No 170
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.58 E-value=1.7e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=26.9
Q ss_pred CCCEEEEeEcCCHhHHH-HHHHHHHHhcCCCCeEEEEE
Q 026046 109 EEDIIYVAVGKSQSSMD-ALSWTLRHAVNPSTLIFLIH 145 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~-AL~~Al~lA~~~ga~L~LLH 145 (244)
..+||+++|-||-.+.+ +++.+-.+ .+.|.+|+++-
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L-~k~G~~V~vv~ 40 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKL-VDEGAEVTPIV 40 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 35899999999999999 58877655 44576655443
No 171
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=23.56 E-value=2.2e+02 Score=22.34 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=21.8
Q ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHhhh--CCCcEEEE
Q 026046 192 CSQSKVMVDTVLIESDLVAKAILDLIPV--LNIRKLVV 227 (244)
Q Consensus 192 ~~~~gV~ve~vvveGd~vaeaIle~A~e--~~aDLIVm 227 (244)
+++.|+++....+-.|+. +.|.+..++ .++|+||.
T Consensus 27 l~~~G~~~~~~~~v~Dd~-~~I~~~l~~~~~~~dliit 63 (135)
T smart00852 27 LTELGIEVTRYVIVPDDK-EAIKEALREALERADLVIT 63 (135)
T ss_pred HHHCCCeEEEEEEeCCCH-HHHHHHHHHHHhCCCEEEE
Confidence 445677776555555664 666655543 35898887
No 172
>PRK09190 hypothetical protein; Provisional
Probab=23.48 E-value=3.6e+02 Score=23.84 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC--CCChHHHHhhhh
Q 026046 178 TGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT--KSSLRLHQKLAR 242 (244)
Q Consensus 178 ~e~a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~--r~GlrRf~~~~~ 242 (244)
.+.+++.+-.++.++...| .++.|. +.+.+.++..++-|||+.+- ..+.++|..+++
T Consensus 92 ~~~l~~ril~lLGLArRAG-----klVsG~---~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~ 150 (220)
T PRK09190 92 EALLARRALDALGLARKAG-----QVVSGF---EKVDAALRSGEAAALIHASDGAADGKRKLDQARR 150 (220)
T ss_pred HHHHHHHHHHHHHHHhhhC-----CEeecH---HHHHHHHHcCCceEEEEeccCChhHHHHHHHHHH
Confidence 3444555556666666655 445663 55677778888888888877 356677877764
No 173
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=23.36 E-value=7e+02 Score=24.28 Aligned_cols=105 Identities=11% Similarity=0.204 Sum_probs=62.9
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH---------
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETG--------- 179 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e--------- 179 (244)
..+||++|..|.=..--+|.|-.+.. +..|+.+.+-- |- . .++++...+.+.+
T Consensus 3 ~~kkvvLAYSGGLDTSv~i~wL~e~~---~~eVia~tadv---------GQ-----~-eed~~~i~eKA~~~Ga~~~~vi 64 (403)
T COG0137 3 KVKKVVLAYSGGLDTSVAIKWLKEKG---GAEVIAVTADV---------GQ-----P-EEDLDAIREKALELGAEEAYVI 64 (403)
T ss_pred CCcEEEEEecCCccHHHHHHHHHHhc---CceEEEEEEeC---------CC-----C-hHHhHHHHHHHHHhCCceEEEe
Confidence 45899999999877778899976553 46666655531 10 0 1333333333221
Q ss_pred -HHHHHHHHHHhHhhcCCCcEEEEEEEcCC-----HHHHHHHHhhhCCCcEEEECCCC
Q 026046 180 -KRRQLLQKFLDTCSQSKVMVDTVLIESDL-----VAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 180 -~a~~lLe~~~~~~~~~gV~ve~vvveGd~-----vaeaIle~A~e~~aDLIVmGS~r 231 (244)
.-+++.+++.-.....+..++....-|.+ +|+.+++.|++.+++.|.=|+..
T Consensus 65 D~reeF~~~yi~~~i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTG 122 (403)
T COG0137 65 DAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTG 122 (403)
T ss_pred ecHHHHHHHHHHHHHHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 12234444444443444444443333332 36888999999999999999993
No 174
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=23.20 E-value=6.3e+02 Score=23.70 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=50.4
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF 188 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~lLe~~ 188 (244)
.-++|-+-.+.++..+..++...+.+.+.| +++++...-+. +. .+.... ...+...
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~G--icIa~~e~~~~------~~------~~~~~~----------~~~~~~~ 226 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANG--VCIAFKEILPA------SL------SDNTKL----------NRIIRTT 226 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCC--eEEEEEEEecC------cc------CcchhH----------HHHHHHH
Confidence 347777777777777777776666666555 44444332111 00 000000 0011111
Q ss_pred HhHhhcCCCcEEEEEEEcC-CHHHHHHHHhhhCCCcEEEECCC
Q 026046 189 LDTCSQSKVMVDTVLIESD-LVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 189 ~~~~~~~gV~ve~vvveGd-~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.++++..+.++ +++.+. +.+..|++.|++.+.+.+.+|+.
T Consensus 227 ~~~ik~~~a~v--Vvv~~~~~~~~~l~~~a~~~g~~~~wigs~ 267 (403)
T cd06361 227 EKIIEENKVNV--IVVFARQFHVFLLFNKAIERNINKVWIASD 267 (403)
T ss_pred HHHHhcCCCeE--EEEEeChHHHHHHHHHHHHhCCCeEEEEEC
Confidence 22233334443 444443 33567788999999999999877
No 175
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=23.15 E-value=2.4e+02 Score=25.02 Aligned_cols=48 Identities=4% Similarity=0.066 Sum_probs=24.4
Q ss_pred HHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 187 KFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
++.+.+...++++.........-+..+++.+.+.++|+||+..--+.+
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 344445556777665444332113455554545567777664333333
No 176
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=22.80 E-value=1.7e+02 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=23.7
Q ss_pred EEEEcCCHHHHHHHH---hhhCC-CcEEEECCCCCCh
Q 026046 202 VLIESDLVAKAILDL---IPVLN-IRKLVVGTTKSSL 234 (244)
Q Consensus 202 vvveGd~vaeaIle~---A~e~~-aDLIVmGS~r~Gl 234 (244)
..+.|+..+..|++. +++.+ +|.||+|.-++.+
T Consensus 170 t~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSi 206 (440)
T COG1570 170 TLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSI 206 (440)
T ss_pred ccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchH
Confidence 455788778888754 45555 9999999666655
No 177
>PRK13054 lipid kinase; Reviewed
Probab=22.77 E-value=2.1e+02 Score=25.69 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=24.9
Q ss_pred HhhcCCCcEEEEEEEc-CCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 191 TCSQSKVMVDTVLIES-DLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 191 ~~~~~gV~ve~vvveG-d~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
.+.+.+++++...... +. +..+++.+...++|.||+..--+.+
T Consensus 26 ~l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 26 LLREEGHTLHVRVTWEKGD-AARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred HHHHcCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEECCccHH
Confidence 3455677766544332 33 5777776666678877765443333
No 178
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.61 E-value=5.9e+02 Score=23.17 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=27.4
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEE
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHV 146 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHV 146 (244)
..+||.|-+.++.++..+|-++.+.-. -+++|.+|-.
T Consensus 69 ~~~riavlvSg~g~nl~~ll~~~~~g~-l~~eI~~ViS 105 (268)
T PLN02828 69 PKYKIAVLASKQDHCLIDLLHRWQDGR-LPVDITCVIS 105 (268)
T ss_pred CCcEEEEEEcCCChhHHHHHHhhhcCC-CCceEEEEEe
Confidence 457999999999999999999875532 3455554443
No 179
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=22.33 E-value=1.3e+02 Score=20.76 Aligned_cols=25 Identities=4% Similarity=-0.150 Sum_probs=21.2
Q ss_pred CEEEEeEcCCHhHHHHHHHHHHHhc
Q 026046 111 DIIYVAVGKSQSSMDALSWTLRHAV 135 (244)
Q Consensus 111 rkILVAVDgSe~S~~AL~~Al~lA~ 135 (244)
++|+++.|.++..+.+..+..+.+.
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~ 72 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLK 72 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhh
Confidence 6899999999999988888777654
No 180
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.09 E-value=3.3e+02 Score=20.74 Aligned_cols=45 Identities=9% Similarity=0.043 Sum_probs=25.9
Q ss_pred HHHHhHhhcCCCcEEEEEEEc---------CCHHHHHHHHhhhCCCcEEEECCC
Q 026046 186 QKFLDTCSQSKVMVDTVLIES---------DLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveG---------d~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+.+.+.|..+|+.+..++.+. -|--..+++.++...+|.||+-.-
T Consensus 21 ~~~~~~a~~~g~~i~~~~~d~~~s~~~~~~R~~~~~ll~~~~~~~~d~ivv~~~ 74 (137)
T cd00338 21 EALREYAARNGLEVVGEYEDAGSSATSLVDRPGLQRLLADVKAGKIDVVLVEKL 74 (137)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCCcccccCCHHHHHHHHHHHcCCCCEEEEEec
Confidence 344445555676665444432 112356677777778888888654
No 181
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=21.92 E-value=43 Score=29.01 Aligned_cols=43 Identities=5% Similarity=0.162 Sum_probs=24.5
Q ss_pred HHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 186 QKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 186 e~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
+++++...+++..++ +.+.|+-- ..-+..+.+.++|.+|+|+.
T Consensus 154 ~~l~~~~~~~~~~~~-I~vDGGI~-~~~~~~~~~aGad~~V~Gs~ 196 (201)
T PF00834_consen 154 RELRKLIPENGLDFE-IEVDGGIN-EENIKQLVEAGADIFVAGSA 196 (201)
T ss_dssp HHHHHHHHHHTCGSE-EEEESSES-TTTHHHHHHHT--EEEESHH
T ss_pred HHHHHHHHhcCCceE-EEEECCCC-HHHHHHHHHcCCCEEEECHH
Confidence 344444555456565 44566543 44555555779999999974
No 182
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.68 E-value=1.8e+02 Score=26.65 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.8
Q ss_pred CHHHHHHHHhhhCCCc-EEEECCC-CCChHHHHhhhhc
Q 026046 208 LVAKAILDLIPVLNIR-KLVVGTT-KSSLRLHQKLARS 243 (244)
Q Consensus 208 ~vaeaIle~A~e~~aD-LIVmGS~-r~GlrRf~~~~~~ 243 (244)
...+++.++|++ +| |||+|.+ .+.-+||...+++
T Consensus 197 ~RQ~a~~~la~~--vD~miVVGg~nSsNT~rL~ei~~~ 232 (280)
T TIGR00216 197 NRQDAVKELAPE--VDLMIVIGGKNSSNTTRLYEIAEE 232 (280)
T ss_pred HHHHHHHHHHhh--CCEEEEECCCCCchHHHHHHHHHH
Confidence 346778888875 56 6677888 6777888887764
No 183
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=21.62 E-value=2.5e+02 Score=25.19 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=20.9
Q ss_pred hhcCCCcEEEEEEEc-CCHHHHHHHHhhhCCCcEEEEC
Q 026046 192 CSQSKVMVDTVLIES-DLVAKAILDLIPVLNIRKLVVG 228 (244)
Q Consensus 192 ~~~~gV~ve~vvveG-d~vaeaIle~A~e~~aDLIVmG 228 (244)
+.+.+++++...... +. +..+++.+...+.|.||+.
T Consensus 23 l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vv~~ 59 (293)
T TIGR03702 23 LRDEGIQLHVRVTWEKGD-AQRYVAEALALGVSTVIAG 59 (293)
T ss_pred HHHCCCeEEEEEecCCCC-HHHHHHHHHHcCCCEEEEE
Confidence 445567665443332 33 5777766666667766653
No 184
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.52 E-value=1.8e+02 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=26.6
Q ss_pred CCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEE
Q 026046 110 EDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLI 144 (244)
Q Consensus 110 ~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LL 144 (244)
.+||+++|-||-.+.+++++.-.+ .+.+.+|.++
T Consensus 3 ~k~IllgiTGSiaa~~~~~ll~~L-~~~g~~V~vv 36 (390)
T TIGR00521 3 NKKILLGVTGGIAAYKTVELVREL-VRQGAEVKVI 36 (390)
T ss_pred CCEEEEEEeCHHHHHHHHHHHHHH-HhCCCEEEEE
Confidence 489999999999999999987666 4456666554
No 185
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=21.40 E-value=1.4e+02 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.1
Q ss_pred CHHHHHHHHhhhCCCcEEEECCC
Q 026046 208 LVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 208 ~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
..++.|.+.++++++|+|++|..
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t 92 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGAT 92 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCC
Confidence 45678889999999999999988
No 186
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=21.38 E-value=4.1e+02 Score=23.62 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=29.2
Q ss_pred HHHhHhhcCCCcEEEEEEE--c-CCHHHHHHHHhhhCCCcEEEECCCCCChHHHHhhh
Q 026046 187 KFLDTCSQSKVMVDTVLIE--S-DLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKLA 241 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvve--G-d~vaeaIle~A~e~~aDLIVmGS~r~GlrRf~~~~ 241 (244)
.+.+.++..|+++...... + .+. ..++..+++.++|.||++........|-+.+
T Consensus 156 ~~~~~~~~~g~~v~~~~~~~~~~~d~-~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~~ 212 (344)
T cd06348 156 IFQKALRDQGLNLVTVQTFQTGDTDF-QAQITAVLNSKPDLIVISALAADGGNLVRQL 212 (344)
T ss_pred HHHHHHHHcCCEEEEEEeeCCCCCCH-HHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence 3334444556666433221 2 233 5566666777888888887744444444433
No 187
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=21.27 E-value=2.7e+02 Score=25.18 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=37.3
Q ss_pred HHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC-CCChHH
Q 026046 183 QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRL 236 (244)
Q Consensus 183 ~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~-r~GlrR 236 (244)
+.|..+++.+.+.|++++.+.-+=-+--+-|.+++....+|+|-+=+. .+|+..
T Consensus 123 ~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~n 177 (248)
T PF07476_consen 123 EALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINN 177 (248)
T ss_dssp HHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhh
Confidence 346677777888899998776654444599999999999999999888 777744
No 188
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=21.17 E-value=1e+03 Score=25.37 Aligned_cols=105 Identities=7% Similarity=0.028 Sum_probs=58.5
Q ss_pred CCEEEEeEcCCH------hHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 026046 110 EDIIYVAVGKSQ------SSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQ 183 (244)
Q Consensus 110 ~rkILVAVDgSe------~S~~AL~~Al~lA~~~ga~L~LLHVi~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~e~a~~ 183 (244)
.++|++.||-=+ .-..|++.-++.-...-.+++|+.|..|... ....+ ++.+.+.++
T Consensus 338 ~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~----------------~~~~y-~~~~~ev~~ 400 (854)
T PLN02205 338 DRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARG----------------KGKDV-KEVQAETHS 400 (854)
T ss_pred CCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCc----------------ccHHH-HHHHHHHHH
Confidence 589999999644 3456666655554444568889888765431 01111 223445555
Q ss_pred HHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCCh
Q 026046 184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSL 234 (244)
Q Consensus 184 lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~Gl 234 (244)
+..++-..+...+...-..+...-+. ++++.+=. -+|+.++-+-|-|+
T Consensus 401 ~v~rIN~~fg~~~~~Pv~~~~~~~~~-~e~~aly~--~ADv~lVT~lRDGM 448 (854)
T PLN02205 401 TVKRINETFGKPGYDPIVLIDAPLKF-YERVAYYV--VAECCLVTAVRDGM 448 (854)
T ss_pred HHHHHHhhcCCCCCceEEEEecCCCH-HHHHHHHH--hccEEEeccccccc
Confidence 56665555544444442233334454 55554433 56877776666655
No 189
>COG0327 Uncharacterized conserved protein [Function unknown]
Probab=21.09 E-value=1.7e+02 Score=26.19 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=16.8
Q ss_pred eccCCCCCCCCEEEEeEcCCHhH
Q 026046 101 VANGNGTQEEDIIYVAVGKSQSS 123 (244)
Q Consensus 101 ~~~~~~~~~~rkILVAVDgSe~S 123 (244)
||...+.+.-+||+++||.++..
T Consensus 27 Lqv~~~~~~v~kV~~avd~t~~v 49 (250)
T COG0327 27 LQVGGPLEEVKKVAVALDATLAV 49 (250)
T ss_pred EEeCCCCcccceEEEEeeCCHHH
Confidence 45444456789999999998743
No 190
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=21.08 E-value=2.8e+02 Score=22.33 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=27.3
Q ss_pred CCCEEEEeEcCC--H----hHHHHHHHHHHHhcCCCCeEEEEEE
Q 026046 109 EEDIIYVAVGKS--Q----SSMDALSWTLRHAVNPSTLIFLIHV 146 (244)
Q Consensus 109 ~~rkILVAVDgS--e----~S~~AL~~Al~lA~~~ga~L~LLHV 146 (244)
+.|+|.++.|-. + +-.+|+.....++...|+++.+++-
T Consensus 67 ~gr~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w 110 (130)
T PF12965_consen 67 PGREVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITW 110 (130)
T ss_pred CCceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 569999999987 2 3456666666666677888877663
No 191
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.03 E-value=1.4e+02 Score=22.57 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCEEEEeEcCCHhHHHHHHHHHHHhcCCCCeEEEEEEecC
Q 026046 109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQ 149 (244)
Q Consensus 109 ~~rkILVAVDgSe~S~~AL~~Al~lA~~~ga~L~LLHVi~~ 149 (244)
..+.++|++..|-.+.+.++. ++.++..|++++.+.-.+.
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~-~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAA-LRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHH-HHHHHHcCCeEEEEECCCC
Confidence 567899999999988888775 5677778888887776543
No 192
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=20.99 E-value=3.3e+02 Score=24.05 Aligned_cols=56 Identities=5% Similarity=0.095 Sum_probs=32.6
Q ss_pred HHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCCCCChHHHHhh
Q 026046 185 LQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRLHQKL 240 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~r~GlrRf~~~ 240 (244)
+..+.+.+.++|+.+-..-...++-.+..++...++++|-||+-+.......+..+
T Consensus 20 i~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~ 75 (279)
T PF00532_consen 20 IRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRRL 75 (279)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHHH
T ss_pred HHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHHH
Confidence 44555566677887743333333333356677788999988887664334444433
No 193
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=20.87 E-value=3e+02 Score=19.07 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=33.3
Q ss_pred HhhcCCCcEEEEEEEcCC-HHHHHHHHhhhCCCcEEEECCC-CCChHHHHhhhhc
Q 026046 191 TCSQSKVMVDTVLIESDL-VAKAILDLIPVLNIRKLVVGTT-KSSLRLHQKLARS 243 (244)
Q Consensus 191 ~~~~~gV~ve~vvveGd~-vaeaIle~A~e~~aDLIVmGS~-r~GlrRf~~~~~~ 243 (244)
.+.+.+++++.+-+..++ ..+++.+......+=.|+++.. -+|+..+.++.++
T Consensus 18 ~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 18 LLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred HHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 344567888766665443 2244444444455667888877 7899888877654
No 194
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=20.64 E-value=2.9e+02 Score=27.21 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHhhcCCCcEEEEEEEcCCHHHHHHHHhhhCCCcEEEECCC
Q 026046 178 TGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT 230 (244)
Q Consensus 178 ~e~a~~lLe~~~~~~~~~gV~ve~vvveGd~vaeaIle~A~e~~aDLIVmGS~ 230 (244)
.+.+..+|+++.+.+...|.++- .....+...+-|-+.+.+++.+.||.+..
T Consensus 60 lenLd~~l~~~~~~v~~~Gg~vy-~A~~aedA~~ii~~iv~~k~~k~vVKsKS 111 (459)
T COG1139 60 LENLDEYLEQLEENVTRNGGHVY-FAKDAEDAREIIGEIVGEKNGKKVVKSKS 111 (459)
T ss_pred HHhHHHHHHHHHHHHHHcCCEEE-EeCCHHHHHHHHHHHHhhccCcEEEEecc
Confidence 34455566666677777787763 22234443344458888999999999977
No 195
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=20.56 E-value=3.9e+02 Score=21.14 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHhHhhcCCCcEEEEEEE-c-------CCHHHHHHHHhhhCCCcEEEEC
Q 026046 187 KFLDTCSQSKVMVDTVLIE-S-------DLVAKAILDLIPVLNIRKLVVG 228 (244)
Q Consensus 187 ~~~~~~~~~gV~ve~vvve-G-------d~vaeaIle~A~e~~aDLIVmG 228 (244)
.+.+.|..+|+.+..+..+ | -|--..+++.++..++|.||+=
T Consensus 26 ~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp~l~~ll~~~~~g~vd~vvv~ 75 (140)
T cd03770 26 ILEEYAKENGLENIRHYIDDGFSGTTFDRPGFNRMIEDIEAGKIDIVIVK 75 (140)
T ss_pred HHHHHHHHCCCEEEEEEEcCCCcCCcCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3344455667665444332 2 2444677888888888988884
No 196
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.50 E-value=1.4e+02 Score=23.57 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=30.1
Q ss_pred HHHHHHhHhhcCCCcEEEEEEEcC----------------CHHHHHHHHhhhCCCcEEEECCC-C-CCh-HHHHhhh
Q 026046 184 LLQKFLDTCSQSKVMVDTVLIESD----------------LVAKAILDLIPVLNIRKLVVGTT-K-SSL-RLHQKLA 241 (244)
Q Consensus 184 lLe~~~~~~~~~gV~ve~vvveGd----------------~vaeaIle~A~e~~aDLIVmGS~-r-~Gl-rRf~~~~ 241 (244)
+++.+.+.++..+++++.+-+... +-.+.|.+.. ..+|.||+++. . .++ ..||...
T Consensus 19 l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l--~~aD~iI~~sP~y~~~~s~~lK~~l 93 (152)
T PF03358_consen 19 LAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKL--KEADGIIFASPVYNGSVSGQLKNFL 93 (152)
T ss_dssp HHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHH--HHSSEEEEEEEEBTTBE-HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhce--ecCCeEEEeecEEcCcCChhhhHHH
Confidence 344444455555666665433321 1123344444 47899999998 4 444 4455444
No 197
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=20.33 E-value=1.9e+02 Score=27.03 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=23.9
Q ss_pred HhHhhcCCCcEEEE-EEEcCCHH---HHHHHHhhhCCCcEEE-ECC
Q 026046 189 LDTCSQSKVMVDTV-LIESDLVA---KAILDLIPVLNIRKLV-VGT 229 (244)
Q Consensus 189 ~~~~~~~gV~ve~v-vveGd~va---eaIle~A~e~~aDLIV-mGS 229 (244)
.+.++..++++... -++.+|.- +.+++.+++.++|.|| +|.
T Consensus 47 ~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 47 IELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred HHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444456665421 12333332 4566788899999999 774
No 198
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=20.16 E-value=3e+02 Score=25.74 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=34.1
Q ss_pred HHHHHhHhhcCCCcEEEEEE-----------EcCCHHHHHHHHhhhCCCcEEEECCCC
Q 026046 185 LQKFLDTCSQSKVMVDTVLI-----------ESDLVAKAILDLIPVLNIRKLVVGTTK 231 (244)
Q Consensus 185 Le~~~~~~~~~gV~ve~vvv-----------eGd~vaeaIle~A~e~~aDLIVmGS~r 231 (244)
|+++..+|...|+++-..+. .|.-..++|.+.++..++|+||.-...
T Consensus 19 ~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l 76 (351)
T TIGR03156 19 LEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHEL 76 (351)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCC
Confidence 56666777777776654333 244456999999999999999998653
Done!