BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026047
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
Sphaeroides
pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
Sphaeroides
Length = 137
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 40 ILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL---S 96
I+E SF LL + ++T + TVFAPTD AFA L GT+ L
Sbjct: 5 IVETATGAGSFTTLLTAAEAAGLVDTLKGDGP--FTVFAPTDAAFAALPEGTVEDLLKPE 62
Query: 97 DQQKV-QLVQFHILPTSMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVN 155
+++K+ +++ +H++P + +S + G L VT G VN
Sbjct: 63 NKEKLTEILTYHVVPGEVMSSDLTEGMTAETVEGGA-------LTVTLEGGPK-----VN 110
Query: 156 EATVANTVFSGSNLAVYQVDQVLLP 180
+++ SN ++ +D VL+P
Sbjct: 111 GVSISQPDVDASNGVIHVIDGVLMP 135
>pdb|1NYO|A Chain A, Solution Structure Of The Antigenic Tb Protein Mpt70MPB70
Length = 163
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 62 QINTQLN-----NSNQGLTVFAPTDNAFANLKSGTINSLSDQQKV--QLVQFHILPTSMS 114
Q+N Q+N NS Q TVFAPT+ AF+ L + TI+ L + ++ +H++ S
Sbjct: 50 QLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTS 108
Query: 115 TSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQV 174
+ L+ + + VT GN + V A V S +N VY +
Sbjct: 109 PANVVGTRQTLQGAS---------VTVTGQGNSLK----VGNADVVCGGVSTANATVYMI 155
Query: 175 DQVLLP 180
D VL+P
Sbjct: 156 DSVLMP 161
>pdb|1PK0|A Chain A, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|B Chain B, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|C Chain C, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
Length = 507
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 132 SNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVY--QVDQVLLPL----DLFG 185
SN+ + ++ N+V T + TV F+ N+ V V+ VL PL DLF
Sbjct: 146 SNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLF- 204
Query: 186 SQAPAPAPSTPEKDVPVAATPKGSSTDASVDTSRALS 222
A AP+ + +K +P K +T S++ + ++
Sbjct: 205 --ALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVT 239
>pdb|1K8T|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef)
pdb|1K90|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K93|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1LVC|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1S26|A Chain A, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|B Chain B, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|C Chain C, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
Length = 510
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 132 SNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVY--QVDQVLLPL----DLFG 185
SN+ + ++ N+V T + TV F+ N+ V V+ VL PL DLF
Sbjct: 147 SNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLF- 205
Query: 186 SQAPAPAPSTPEKDVPVAATPKGSSTDASVDTSRALS 222
A AP+ + +K +P K +T S++ + ++
Sbjct: 206 --ALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVT 240
>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|E Chain E, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|F Chain F, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 208
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 44 GGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFA 78
GG+ T+ IR+L+ D+++ ++NN GL VFA
Sbjct: 65 GGESTTMIRILKEMDMDEKLVERINN---GLPVFA 96
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 29.6 bits (65), Expect = 1.7, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 132 SNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVY--QVDQVLLPL----DLFG 185
SN+ + ++ N+V T + TV F+ N+ V V+ VL PL DLF
Sbjct: 414 SNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLF- 472
Query: 186 SQAPAPAPSTPEKDVPVAATPKGSSTDASVDTSRALS 222
A AP+ + +K +P K +T S++ + ++
Sbjct: 473 --ALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVT 507
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 132 SNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVY--QVDQVLLPL----DLFG 185
SN+ + ++ N+V T + TV F+ N+ V V+ VL PL DLF
Sbjct: 384 SNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLF- 442
Query: 186 SQAPAPAPSTPEKDVPVAATPKGSSTDASVDTSRALS 222
A AP+ + +K +P K +T S++ + ++
Sbjct: 443 --ALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVT 477
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.127 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,074,987
Number of Sequences: 62578
Number of extensions: 233572
Number of successful extensions: 474
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 10
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)