Query 026047
Match_columns 244
No_of_seqs 284 out of 1273
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 6E-27 1.3E-31 197.0 10.2 136 33-184 46-185 (187)
2 PF02469 Fasciclin: Fasciclin 99.9 4E-24 8.6E-29 168.9 7.3 125 45-180 1-128 (128)
3 smart00554 FAS1 Four repeated 99.8 2.9E-21 6.2E-26 146.7 5.8 96 75-181 1-99 (99)
4 KOG1437 Fasciclin and related 99.3 1.8E-12 3.9E-17 127.9 4.7 135 32-181 371-508 (682)
5 KOG1437 Fasciclin and related 99.2 9.9E-11 2.1E-15 115.7 9.1 131 35-183 508-644 (682)
6 PF13956 Ibs_toxin: Toxin Ibs, 61.2 4.3 9.4E-05 21.7 0.8 15 1-15 1-15 (19)
7 PRK09810 entericidin A; Provis 55.5 9.1 0.0002 24.8 1.7 22 1-22 1-22 (41)
8 PF02402 Lysis_col: Lysis prot 53.6 9.1 0.0002 25.2 1.5 21 1-21 1-21 (46)
9 PLN02995 Probable pectinestera 38.5 21 0.00045 35.5 2.1 21 1-21 4-24 (539)
10 PRK15348 type III secretion sy 37.1 32 0.00068 30.9 2.8 36 47-86 32-67 (249)
11 PF10913 DUF2706: Protein of u 34.9 34 0.00075 23.4 2.1 23 1-23 1-24 (60)
12 PRK14864 putative biofilm stre 31.5 42 0.00091 26.1 2.4 15 10-24 10-24 (104)
13 TIGR00247 conserved hypothetic 21.5 1.5E+02 0.0032 27.5 4.5 29 31-59 47-78 (342)
14 PF03207 OspD: Borrelia outer 21.2 59 0.0013 27.6 1.6 24 1-24 1-25 (254)
15 PRK10081 entericidin B membran 20.0 71 0.0015 21.4 1.5 8 1-8 1-8 (48)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=6e-27 Score=197.00 Aligned_cols=136 Identities=25% Similarity=0.447 Sum_probs=119.0
Q ss_pred CccCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCCC----HHHHHhhcccce
Q 026047 33 GPPNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSLS----DQQKVQLVQFHI 108 (244)
Q Consensus 33 ~~~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L~----~~~l~~lL~yHI 108 (244)
...+|.+...++++|++|..+++.++|.++|++ .++||||||||+||.+++.++++.|. .+.+.++|.|||
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~-----~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHV 120 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNE-----TGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHV 120 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcC-----CCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEE
Confidence 456788888889999999999999999999997 89999999999999999999998882 357899999999
Q ss_pred eccccChhccccCCCceeccCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECccccCCCCC
Q 026047 109 LPTSMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLLPLDLF 184 (244)
Q Consensus 109 v~~~~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLlP~~l~ 184 (244)
++|+++.+++... +.++|+.|. .++|...++.++|+ +++|+..|+.++||+||+||+||+|+...
T Consensus 121 v~Gk~~~~~l~~~-~~v~t~~G~------~~~i~~~~~~~~Vn----~a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 121 VEGKITAADLKSS-GSVKTVQGA------DLKIKVTGGGVYVN----DATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred EcCcccHHHhhcc-ccceeecCc------eEEEEEcCCcEEEe----eeEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 9999999999973 578898862 45666655669997 79999999999999999999999998753
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.90 E-value=4e-24 Score=168.91 Aligned_cols=125 Identities=32% Similarity=0.523 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCC--CHHHHHhhcccceeccccChhccccCC
Q 026047 45 GQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL--SDQQKVQLVQFHILPTSMSTSQFQTAS 122 (244)
Q Consensus 45 ~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L--~~~~l~~lL~yHIv~~~~~~s~L~~~s 122 (244)
|+||+|.++|+++|+.+.|++ +.+.||||||+|+||++++.+..+.+ ..+++.++|+|||+++.++.+++....
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~----~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~ 76 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND----SDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGK 76 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC----SSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHH
T ss_pred CCHHHHHHHHHHcCCHHHHhc----CCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcccc
Confidence 689999999999999999942 26899999999999999865554444 467899999999999999999998752
Q ss_pred Cceec-cCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECccccC
Q 026047 123 NPLRT-QAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLLP 180 (244)
Q Consensus 123 ~~l~T-lag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLlP 180 (244)
..++| +.| +.+.++...+++.++|++ .++|++.++.+.||+||+||+||+|
T Consensus 77 ~~~~t~~~g----~~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 77 QTLETLLNG----QPLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEEBSSTT----CEEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred ccceeccCC----CEEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 36888 444 334444442378899973 4999999999999999999999998
No 3
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.84 E-value=2.9e-21 Score=146.74 Aligned_cols=96 Identities=39% Similarity=0.595 Sum_probs=80.5
Q ss_pred EEEecCcHHHHhCccccccCCCHH-HHHhhcccceeccccChhccccCCCceeccCCCCCCCeeeEEEEecC--cEEEEe
Q 026047 75 TVFAPTDNAFANLKSGTINSLSDQ-QKVQLVQFHILPTSMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSG--NQVNLT 151 (244)
Q Consensus 75 TVFAPtD~AF~~l~~~~l~~L~~~-~l~~lL~yHIv~~~~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g--~~v~v~ 151 (244)
|||||+|+||+++..+.++.+..+ .++++|+|||++++++.++|... ..++|+.| . .+.++..+ +.++++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~~-~~~~Tl~g----~--~l~v~~~~~~~~i~in 73 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLNG-GTLPTLAG----S--KLRVTRSGDSGTVTVN 73 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhccC-CccccCCC----C--EEEEEEeCCCCeEEEc
Confidence 899999999999987655666433 88999999999999999999873 57889875 3 46666654 788886
Q ss_pred cCccceEEeeeeccCCCeEEEEECccccCC
Q 026047 152 TGVNEATVANTVFSGSNLAVYQVDQVLLPL 181 (244)
Q Consensus 152 ~g~~~a~V~~~di~~~NGvIH~ID~VLlP~ 181 (244)
+++|++.|+.++||+||+||+||+|+
T Consensus 74 ----~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 74 ----GARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred ----ceEEEECCEecCCeEEEEECceeCCC
Confidence 58999999999999999999999985
No 4
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.29 E-value=1.8e-12 Score=127.88 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=102.4
Q ss_pred CCccCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCCCHHHHHhhcccceecc
Q 026047 32 SGPPNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSLSDQQKVQLVQFHILPT 111 (244)
Q Consensus 32 ~~~~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L~~~~l~~lL~yHIv~~ 111 (244)
....+++++..++. -+++.+++.+-++.+.|.. ++.+|+|+|+|++|+.+.+. +.+...+++|+||||+.
T Consensus 371 ~~~~~l~~La~e~~-~st~~rlv~elgll~~L~~-----n~e~t~~lp~n~~fd~~~~~----~~r~l~~qIL~~HII~~ 440 (682)
T KOG1437|consen 371 DSLKNLMSLAREDE-ISTSMRLVAELGLLTALAP-----NDEATLLLPTNNLFDDLTPL----ESRRLAEQILYNHIIPE 440 (682)
T ss_pred chHHHHHHHHhccc-ccHHHHHHHhccceEEEcC-----CCceEEeeehhhhccCCChh----hhHHHHHHHHHHhCcch
Confidence 34678899888875 4999999999999887765 45599999999999996552 12333789999999999
Q ss_pred ccChhccccCCCceeccCCCCCCCeeeEEEEecC---cEEEEecCccceEEeeeeccCCCeEEEEECccccCC
Q 026047 112 SMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSG---NQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLLPL 181 (244)
Q Consensus 112 ~~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g---~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLlP~ 181 (244)
+.+.+++..+.+.++|+.+ .++..-+.+.. +...+.-|.. +.|...|+..+||+||.||+|+.|.
T Consensus 441 ~~~~~~~y~~~~~v~t~g~----~~l~~fv~r~~~s~~~t~i~~~~~-~~Ii~aDi~~~nGvvH~id~vl~p~ 508 (682)
T KOG1437|consen 441 YLTSSSMYNGQTTVRTLGK----NKLLYFVYRHSVSANVTDILIGNE-ACIIEADISVKNGVVHIIDRVLDPV 508 (682)
T ss_pred hhhhhhhhcccceeeccCC----eEEEEEEecccccccceeeeccce-eeEEecccceecCceEEeeEEcCcc
Confidence 9999999887667888765 23333333322 2222222333 8899999999999999999999993
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.16 E-value=9.9e-11 Score=115.69 Aligned_cols=131 Identities=20% Similarity=0.335 Sum_probs=95.2
Q ss_pred cCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCCC-HHHHHhhcccceecccc
Q 026047 35 PNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSLS-DQQKVQLVQFHILPTSM 113 (244)
Q Consensus 35 ~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L~-~~~l~~lL~yHIv~~~~ 113 (244)
.++++.|++++++|.|.++++..++.++++. .+.||+|||||+||++...+... +. ...+..+++||++++.+
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~~-----~~~~t~fvPt~ka~~~~~~~~~~-~~~~~~l~~~l~yH~v~~~~ 581 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPEELTP-----EGNYTLFVPTNKAWQKSTKDEKS-LFHKKALQDFLKYHLVPGQS 581 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChhhhcc-----CCceEEEeecccccccCCcchhh-cchHHHHHHHHHhcccccee
Confidence 8999999999999999999999999999965 79999999999999997664322 43 46789999999999876
Q ss_pred ChhccccCCCceeccCCCCCCCeeeEEEEecCcEEEEe----cCcc-ceEEeeeeccCCCeEEEEECccccCCCC
Q 026047 114 STSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLT----TGVN-EATVANTVFSGSNLAVYQVDQVLLPLDL 183 (244)
Q Consensus 114 ~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g~~v~v~----~g~~-~a~V~~~di~~~NGvIH~ID~VLlP~~l 183 (244)
. +...+.+..+ . + +.++ ..++.+.+. .|.. ..++...++...||++|+||.||.|+++
T Consensus 582 ~---ls~~~~~~v~--~----~-~k~s--~~~~~~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l 644 (682)
T KOG1437|consen 582 R---LSLGSSPYVM--I----Q-VKLS--LRGDHLFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDL 644 (682)
T ss_pred e---eeccccccee--e----e-eeEE--EecccEEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcc
Confidence 5 2222222211 1 1 1222 223333222 2322 3456678899999999999999999865
No 6
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=61.22 E-value=4.3 Score=21.68 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=8.9
Q ss_pred CCCchhHHHHHHHHH
Q 026047 1 MTKPFCFMFFLLLVS 15 (244)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (244)
|+|+..+|+.++++.
T Consensus 1 MMk~vIIlvvLLliS 15 (19)
T PF13956_consen 1 MMKLVIILVVLLLIS 15 (19)
T ss_pred CceehHHHHHHHhcc
Confidence 777766655555543
No 7
>PRK09810 entericidin A; Provisional
Probab=55.47 E-value=9.1 Score=24.81 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=12.1
Q ss_pred CCCchhHHHHHHHHHHHhhccc
Q 026047 1 MTKPFCFMFFLLLVSLLHCIKT 22 (244)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (244)
|+|++.++++++++.+-.|.+.
T Consensus 1 mMkk~~~l~~~~~~~L~aCNTv 22 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNTA 22 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhhc
Confidence 6666555444444455566654
No 8
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=53.56 E-value=9.1 Score=25.19 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=10.9
Q ss_pred CCCchhHHHHHHHHHHHhhcc
Q 026047 1 MTKPFCFMFFLLLVSLLHCIK 21 (244)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (244)
|||.+...++++.+++-.|..
T Consensus 1 MkKi~~~~i~~~~~~L~aCQa 21 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQA 21 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhh
Confidence 775544444455545555543
No 9
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=38.52 E-value=21 Score=35.50 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=14.6
Q ss_pred CCCchhHHHHHHHHHHHhhcc
Q 026047 1 MTKPFCFMFFLLLVSLLHCIK 21 (244)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (244)
|+++++||++.+||+|+.|..
T Consensus 4 ~~~~~~~~~~~~ll~~~~~~~ 24 (539)
T PLN02995 4 MMQKISFLSLHLLLLLLLCVH 24 (539)
T ss_pred HhhhhhHHHHHHHHHHHHHhh
Confidence 778899987766555666653
No 10
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=37.13 E-value=32 Score=30.86 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=23.4
Q ss_pred hHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHh
Q 026047 47 FTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFAN 86 (244)
Q Consensus 47 fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~ 86 (244)
-......|+..|+...... ..++.||.+|.+++-+.
T Consensus 32 A~~I~a~L~~~gI~y~~~~----~~~G~tI~Vp~~~~~~A 67 (249)
T PRK15348 32 ANQMLALLMQHHIDAEKKQ----EEDGVTLRVEQSQFINA 67 (249)
T ss_pred HHHHHHHHHHcCCCceEee----CCCCeEEEecHHHHHHH
Confidence 3455566666666544321 15789999999997764
No 11
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=34.86 E-value=34 Score=23.36 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=15.2
Q ss_pred CCCchhHHHHHHHH-HHHhhcccc
Q 026047 1 MTKPFCFMFFLLLV-SLLHCIKTS 23 (244)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~ 23 (244)
|-|.++|++++.++ -+|+|+..+
T Consensus 1 mlk~lkf~lv~imlaqllsctpsa 24 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCTPSA 24 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCC
Confidence 77788886655444 677787654
No 12
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=31.46 E-value=42 Score=26.07 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=6.2
Q ss_pred HHHHHHHHhhccccc
Q 026047 10 FLLLVSLLHCIKTSA 24 (244)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (244)
++++.++|+.|...+
T Consensus 10 ~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 10 SLLLTLLLSACSALQ 24 (104)
T ss_pred HHHHHHHHhhhhhcc
Confidence 333334444444433
No 13
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=21.48 E-value=1.5e+02 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=17.4
Q ss_pred CCCccCHHHHHHhCC---ChHHHHHHHHHCCC
Q 026047 31 LSGPPNITAILEKGG---QFTSFIRLLENTQQ 59 (244)
Q Consensus 31 p~~~~ni~~iL~~~~---~fS~F~~lL~~t~l 59 (244)
..+...|.+.|++.+ .=..|..+++..+.
T Consensus 47 G~s~~~Ia~~L~~~GvI~s~~~F~~~ak~~~~ 78 (342)
T TIGR00247 47 GTGVSKIAKELKKQKLIKSEKLLQYLLKIKGS 78 (342)
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHhcCC
Confidence 345677888888765 22345555554443
No 14
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=21.16 E-value=59 Score=27.64 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=16.4
Q ss_pred CCCchhHHHHH-HHHHHHhhccccc
Q 026047 1 MTKPFCFMFFL-LLVSLLHCIKTSA 24 (244)
Q Consensus 1 m~~~~~~~~~~-~~~~~~~~~~~~~ 24 (244)
|||.+.+|+.+ +|++..+|.-+.+
T Consensus 1 mkklikill~slflllsisc~hdkq 25 (254)
T PF03207_consen 1 MKKLIKILLLSLFLLLSISCVHDKQ 25 (254)
T ss_pred ChhHHHHHHHHHHHHHhhhhccchh
Confidence 89998886553 4456677876654
No 15
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=20.00 E-value=71 Score=21.39 Aligned_cols=8 Identities=25% Similarity=0.027 Sum_probs=4.0
Q ss_pred CCCchhHH
Q 026047 1 MTKPFCFM 8 (244)
Q Consensus 1 m~~~~~~~ 8 (244)
|+|+...+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 55554443
Done!