Query 026047
Match_columns 244
No_of_seqs 284 out of 1273
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:24:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w7d_A Fasciclin-like protein; 100.0 3.1E-31 1.1E-35 213.4 5.1 132 34-182 2-137 (137)
2 2vxp_A Transforming growth fac 100.0 7.7E-30 2.6E-34 204.0 11.0 129 35-179 2-132 (132)
3 1nyo_A Immunogenic protein MPT 100.0 1.6E-29 5.5E-34 209.5 7.1 131 33-182 26-163 (163)
4 1o70_A Fasciclin I, FAS I, FCN 99.9 1.4E-25 4.8E-30 203.2 8.5 143 34-185 158-314 (324)
5 1o70_A Fasciclin I, FAS I, FCN 99.9 9.9E-25 3.4E-29 197.6 10.0 139 33-182 4-158 (324)
6 1z65_A PRPLP, prion-like prote 23.1 64 0.0022 18.5 2.4 14 1-14 1-14 (30)
7 2xk0_A Polycomb protein PCL; t 14.5 59 0.002 22.4 1.1 9 186-194 5-13 (69)
8 3bpd_A Uncharacterized protein 12.7 45 0.0015 24.7 0.1 17 163-179 68-84 (100)
9 3ygs_P Procaspase 9; apoptosis 8.9 2.1E+02 0.0073 20.2 2.7 24 36-59 58-83 (97)
10 2jpw_A Troponin I, cardiac mus 8.2 1.5E+02 0.0052 17.0 1.2 9 186-194 11-19 (32)
No 1
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.96 E-value=3.1e-31 Score=213.35 Aligned_cols=132 Identities=27% Similarity=0.468 Sum_probs=117.2
Q ss_pred ccCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCC----CHHHHHhhccccee
Q 026047 34 PPNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL----SDQQKVQLVQFHIL 109 (244)
Q Consensus 34 ~~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L----~~~~l~~lL~yHIv 109 (244)
++||+++|+++++||+|.++|+++|+.+.|++ .++||||||+|+||++++.+.++.| +++.++++|+|||+
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv 76 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKG-----DGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVV 76 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTS-----SSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEE
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcC-----CCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEe
Confidence 57899999999999999999999999999986 6899999999999999988777777 34678999999999
Q ss_pred ccccChhccccCCCceeccCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECccccCCC
Q 026047 110 PTSMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLLPLD 182 (244)
Q Consensus 110 ~~~~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLlP~~ 182 (244)
+++++.++|... ..++|+.| + .|+|+..+| ++|+ +++|+..|+.++||+||+||+||+|+.
T Consensus 77 ~~~~~~~~l~~~-~~~~tl~G----~--~l~v~~~~g-v~vn----~a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 77 PGEVMSSDLTEG-MTAETVEG----G--ALTVTLEGG-PKVN----GVSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp ESCCCTTTSCSS-EEEECTTS----C--EEEEECTTS-CEET----TEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred CcEEcHHHhcCC-CeeeccCC----c--eEEEEecCC-EEEe----CcEEEECCeecCCeEEEEECeeeCCCC
Confidence 999999999874 46888876 2 578888777 8886 589999999999999999999999973
No 2
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.96 E-value=7.7e-30 Score=204.01 Aligned_cols=129 Identities=21% Similarity=0.345 Sum_probs=113.9
Q ss_pred cCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCC--CHHHHHhhcccceeccc
Q 026047 35 PNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL--SDQQKVQLVQFHILPTS 112 (244)
Q Consensus 35 ~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L--~~~~l~~lL~yHIv~~~ 112 (244)
+||+++|+++++||+|.++++++|+.+.|++ .++||||||+|+||++++.+.++.| ++++++++|+|||+++.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~-----~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~ 76 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNR-----EGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEI 76 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHS-----SCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSC
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcC-----CCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCce
Confidence 6899999999999999999999999999986 7899999999999999988776665 57889999999999999
Q ss_pred cChhccccCCCceeccCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECcccc
Q 026047 113 MSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLL 179 (244)
Q Consensus 113 ~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLl 179 (244)
++.+++... ..++|+.| + .++|+..++.++|+ +++|+..|+.++||+||+||+||+
T Consensus 77 ~~~~~l~~~-~~~~tl~G----~--~l~v~~~~~~v~vn----~a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 77 LVSGGIGAL-VRLKSLQG----D--KLEVSLKNNVVSVN----KEPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp CCSTTCSSC-EEEEBTTS----S--EEEEEEETTEEEES----SCBEEEEEEEETTEEEEEESSCC-
T ss_pred eehhhccCC-ceEecCCC----C--EEEEEEeCCEEEEe----ccEEEEcceecCCEEEEEECcEeC
Confidence 988888753 46889876 2 57788888889996 589999999999999999999985
No 3
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.96 E-value=1.6e-29 Score=209.47 Aligned_cols=131 Identities=27% Similarity=0.433 Sum_probs=116.1
Q ss_pred CccCHHHHHHhCCChHHHHHHHH-----HCCChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCC--CHHHHHhhcc
Q 026047 33 GPPNITAILEKGGQFTSFIRLLE-----NTQQDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL--SDQQKVQLVQ 105 (244)
Q Consensus 33 ~~~ni~~iL~~~~~fS~F~~lL~-----~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L--~~~~l~~lL~ 105 (244)
...+|+++|+++++||+|.++|+ ++|+.+.|++ .+ ||||||+|+||++++.++++.| +++.++++|+
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~-----~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~ 99 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNS-----GQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILT 99 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTS-----SS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHH
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCC-----CC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHH
Confidence 56899999999999999999999 9999999986 56 9999999999999988777766 3478999999
Q ss_pred cceeccccChhccccCCCceeccCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECccccCCC
Q 026047 106 FHILPTSMSTSQFQTASNPLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLLPLD 182 (244)
Q Consensus 106 yHIv~~~~~~s~L~~~s~~l~Tlag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLlP~~ 182 (244)
|||+++.++.++|. +.++|+.| + .|+|+..++.++|+ +++|+..|+.++||+||+||+||+|+.
T Consensus 100 yHvv~g~~~~~~l~---g~~~Tl~G----~--~l~v~~~~~~v~vn----~a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 100 YHVVAGQTSPANVV---GTRQTLQG----A--SVTVTGQGNSLKVG----NADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp HTEEESCCCTTTSC---EEEECTTS----S--EEEEEECSSCEEET----TEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred hceECCEEcHHHhC---CccccCCC----C--EEEEEEECCEEEEe----ccEEEECceEcCCEEEEEECcEeCCCC
Confidence 99999999999997 37889875 2 57888888889986 589999999999999999999999973
No 4
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.92 E-value=1.4e-25 Score=203.20 Aligned_cols=143 Identities=14% Similarity=0.163 Sum_probs=118.3
Q ss_pred ccCHHHHHHhCCChHHHHHHHHHCCChHHHhhhccCCCCCeEEEecCcHHHHhCc----cccccCCCH---HHHHhhccc
Q 026047 34 PPNITAILEKGGQFTSFIRLLENTQQDDQINTQLNNSNQGLTVFAPTDNAFANLK----SGTINSLSD---QQKVQLVQF 106 (244)
Q Consensus 34 ~~ni~~iL~~~~~fS~F~~lL~~t~l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~----~~~l~~L~~---~~l~~lL~y 106 (244)
..++.++|+++++|++|.++++.+|+.+.|++ +.++||||||+|+||++++ .+..+.|.+ ++++++|+|
T Consensus 158 ~~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~----~~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~~~~~~l~~iL~y 233 (324)
T 1o70_A 158 YTTVLGKLESDPMMSDTYKMGKFSHFNDQLNN----TQRRFTYFVPRDKGWQKTELDYPSAHKKLFMADFSYHSKSILER 233 (324)
T ss_dssp CSCHHHHHHHCGGGHHHHHHTTTTTTTGGGGC----SSSEEEEEEECHHHHHHHHHHCHHHHHHHTSGGGHHHHHHHHHT
T ss_pred hhhHHHHhhcCchHHHHHHHHHhhCHHHHhCC----CCCCeEEEEeChHHHHhhhhhchhHHHHHhccCcHHHHHHHHHh
Confidence 46899999999999999999999999888863 3689999999999999984 334455543 489999999
Q ss_pred ceecc--ccChhccccCCC-----ceeccCCCCCCCeeeEEEEecCcEEEEecCccceEEeeeeccCCCeEEEEECcccc
Q 026047 107 HILPT--SMSTSQFQTASN-----PLRTQAGNSNDGEFPLNVTTSGNQVNLTTGVNEATVANTVFSGSNLAVYQVDQVLL 179 (244)
Q Consensus 107 HIv~~--~~~~s~L~~~s~-----~l~Tlag~~~~g~~~l~Vt~~g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~VLl 179 (244)
||+++ .|+.++|...++ .++|+. + ++.++++..|+.++|+.+.++++|+..|+.+.||+||+||+||+
T Consensus 234 Hvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~----~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~NGvIHvID~VL~ 308 (324)
T 1o70_A 234 HLAISDKEYTMKDLVKFSQESGSVILPTFR-D----SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTNGIIHVIDYPLL 308 (324)
T ss_dssp TEEEESSCCCHHHHHHHHHHSSSEEEECSS-S----EEEEEEEEETTEEEEEETTEEEEEEEEEEEETTEEEEEESSCSC
T ss_pred cEeCCcceEcHHHHhhhccCCCeeeeeccC-C----cEEEEEEecCCEEEEEecCceeEEEEcccccCCCeEEEeceeec
Confidence 99998 888899986422 378876 2 46676666788999986666899999999999999999999999
Q ss_pred CCCCCC
Q 026047 180 PLDLFG 185 (244)
Q Consensus 180 P~~l~~ 185 (244)
|++...
T Consensus 309 P~~~~~ 314 (324)
T 1o70_A 309 EEKDVV 314 (324)
T ss_dssp CTTTTC
T ss_pred CCcccc
Confidence 998755
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.91 E-value=9.9e-25 Score=197.59 Aligned_cols=139 Identities=21% Similarity=0.313 Sum_probs=107.3
Q ss_pred CccCHHHHHH------hCCChHHHHHHHHHCC--ChHHHhhhccCCCCCeEEEecCcHHHHhCccccccCC--CHHHHHh
Q 026047 33 GPPNITAILE------KGGQFTSFIRLLENTQ--QDDQINTQLNNSNQGLTVFAPTDNAFANLKSGTINSL--SDQQKVQ 102 (244)
Q Consensus 33 ~~~ni~~iL~------~~~~fS~F~~lL~~t~--l~~~L~~~ln~s~~~~TVFAPtD~AF~~l~~~~l~~L--~~~~l~~ 102 (244)
-..||+++|+ ++++||+|.++|+++| +.+.|++ .++||||||+|+||+++. ++.| +++.+++
T Consensus 4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~-----~~~~TvFAPtn~Af~~~~---~~~l~~~~~~l~~ 75 (324)
T 1o70_A 4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINS-----LTEVTILAPSNEAWNSSN---INNVLRDRNKMRQ 75 (324)
T ss_dssp ---------------CCHHHHHHHHHHHHHTCSHHHHHHHT-----CSSEEEEEECHHHHHHTC---THHHHTCHHHHHH
T ss_pred ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcC-----CCCeEEEEEChHhhhccc---HhhhhCCHHHHHH
Confidence 3578999998 6789999999999999 9999987 789999999999998763 3333 5788999
Q ss_pred hcccceeccccChhccccCCC----ceeccCCCCCCCeeeEEEEec--CcEEEEecCccceEEeeeeccCCCeEEEEECc
Q 026047 103 LVQFHILPTSMSTSQFQTASN----PLRTQAGNSNDGEFPLNVTTS--GNQVNLTTGVNEATVANTVFSGSNLAVYQVDQ 176 (244)
Q Consensus 103 lL~yHIv~~~~~~s~L~~~s~----~l~Tlag~~~~g~~~l~Vt~~--g~~v~v~~g~~~a~V~~~di~~~NGvIH~ID~ 176 (244)
+|+|||++++++.++|....+ .++|+.|. ..+.++++.. ++.+++++|..+++|+..|+.++||+||+||+
T Consensus 76 iL~yHvv~g~~~~~~l~~~~~~~~~~~~Tl~g~---~~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~ 152 (324)
T 1o70_A 76 ILNMHIIKDRLNVDKIRQKNANLIAQVPTVNNN---TFLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDH 152 (324)
T ss_dssp HHHHTEESSCCCHHHHHHHTSSSCCCEEBSSTT---CEEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESS
T ss_pred HHHhcEeCCeecHHHHhhccCCCceEEEcCCCC---ceEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEch
Confidence 999999999999999987532 68898873 2245676643 35688887766799999999999999999999
Q ss_pred cccCCC
Q 026047 177 VLLPLD 182 (244)
Q Consensus 177 VLlP~~ 182 (244)
||.|+.
T Consensus 153 VL~pp~ 158 (324)
T 1o70_A 153 VLGVPY 158 (324)
T ss_dssp CTTSCC
T ss_pred hhhhch
Confidence 999864
No 6
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=23.10 E-value=64 Score=18.51 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=9.2
Q ss_pred CCCchhHHHHHHHH
Q 026047 1 MTKPFCFMFFLLLV 14 (244)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (244)
|+|++.-+++.++.
T Consensus 1 MrkhLG~~wlai~c 14 (30)
T 1z65_A 1 MKNRLGTWWVAILC 14 (30)
T ss_dssp CCSSCSSHHHHHHH
T ss_pred CcchhhhhHHHHHH
Confidence 88998776554333
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=14.46 E-value=59 Score=22.41 Aligned_cols=9 Identities=33% Similarity=0.756 Sum_probs=4.6
Q ss_pred CCCCCCCCC
Q 026047 186 SQAPAPAPS 194 (244)
Q Consensus 186 ~papap~p~ 194 (244)
||+|||+|+
T Consensus 5 pp~~a~~pa 13 (69)
T 2xk0_A 5 PPVAAPSPA 13 (69)
T ss_dssp CSSSSSCCC
T ss_pred CCCCCCCcc
Confidence 455555544
No 8
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=12.70 E-value=45 Score=24.67 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.2
Q ss_pred eccCCCeEEEEECcccc
Q 026047 163 VFSGSNLAVYQVDQVLL 179 (244)
Q Consensus 163 di~~~NGvIH~ID~VLl 179 (244)
.++...|+||.||.|..
T Consensus 68 ~IE~~GgvIHSIDEVva 84 (100)
T 3bpd_A 68 VIEDMGGVIHSVDEVVA 84 (100)
T ss_dssp HHHTTTCEEEEEEEEEE
T ss_pred HHHHcCCeEEeeeeeee
Confidence 45677899999998743
No 9
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=8.94 E-value=2.1e+02 Score=20.17 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=18.9
Q ss_pred CHHHHHHhCC--ChHHHHHHHHHCCC
Q 026047 36 NITAILEKGG--QFTSFIRLLENTQQ 59 (244)
Q Consensus 36 ni~~iL~~~~--~fS~F~~lL~~t~l 59 (244)
.++++|...| -|..|+.+|+.++-
T Consensus 58 ~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 58 QLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 4788887765 49999999998763
No 10
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=8.24 E-value=1.5e+02 Score=17.04 Aligned_cols=9 Identities=56% Similarity=0.977 Sum_probs=4.7
Q ss_pred CCCCCCCCC
Q 026047 186 SQAPAPAPS 194 (244)
Q Consensus 186 ~papap~p~ 194 (244)
+|-|||+|-
T Consensus 11 ~~~PaP~p~ 19 (32)
T 2jpw_A 11 EPQPAPAPV 19 (32)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCccc
Confidence 455555553
Done!