Query 026049
Match_columns 244
No_of_seqs 225 out of 704
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0439 VAMP-associated protei 100.0 2.4E-28 5.1E-33 212.5 16.4 137 1-139 2-141 (218)
2 COG5066 SCS2 VAMP-associated p 100.0 4.9E-28 1.1E-32 208.2 12.5 119 8-128 3-122 (242)
3 PF00635 Motile_Sperm: MSP (Ma 99.9 7.8E-23 1.7E-27 158.6 12.0 91 8-99 2-93 (109)
4 PF14874 PapD-like: Flagellar- 98.5 1.6E-06 3.4E-11 66.4 11.5 70 6-75 2-74 (102)
5 PF00345 PapD_N: Pili and flag 96.8 0.017 3.7E-07 45.5 10.4 107 8-127 2-117 (122)
6 PRK09918 putative fimbrial cha 92.4 1.6 3.5E-05 38.6 10.4 106 7-128 25-135 (230)
7 PF14646 MYCBPAP: MYCBP-associ 92.4 0.9 2E-05 43.7 9.4 63 14-76 238-313 (426)
8 PRK09926 putative chaperone pr 91.4 2.4 5.1E-05 38.0 10.4 87 6-97 25-121 (246)
9 PF02183 HALZ: Homeobox associ 91.3 0.59 1.3E-05 31.3 4.8 39 176-214 4-42 (45)
10 PRK15249 fimbrial chaperone pr 91.0 2.6 5.6E-05 38.0 10.3 85 7-94 29-124 (253)
11 PF11614 FixG_C: IG-like fold 90.5 1.1 2.4E-05 35.1 6.6 51 26-76 34-86 (118)
12 PF06156 DUF972: Protein of un 90.3 0.32 7E-06 38.4 3.4 39 175-213 13-51 (107)
13 PRK11385 putativi pili assembl 90.2 12 0.00026 33.4 13.8 107 7-127 27-145 (236)
14 PRK15299 fimbrial chaperone pr 90.2 7.6 0.00016 34.3 12.4 110 7-129 23-140 (227)
15 PF07610 DUF1573: Protein of u 90.0 1.8 4E-05 28.5 6.4 43 29-72 2-45 (45)
16 PRK15211 fimbrial chaperone pr 89.3 9.2 0.0002 34.0 12.2 84 8-97 24-113 (229)
17 PRK15246 fimbrial assembly cha 88.7 5.3 0.00011 35.6 10.3 86 7-97 11-106 (233)
18 PRK15290 lfpB fimbrial chapero 87.2 17 0.00038 32.6 12.7 109 8-128 39-155 (243)
19 PRK15295 fimbrial assembly cha 87.2 7.3 0.00016 34.5 10.2 85 7-97 20-111 (226)
20 PRK13169 DNA replication intia 87.1 1 2.3E-05 35.8 4.2 37 177-213 15-51 (110)
21 smart00340 HALZ homeobox assoc 87.0 1.9 4.1E-05 28.7 4.7 31 185-215 6-36 (44)
22 PF02344 Myc-LZ: Myc leucine z 86.5 2.3 4.9E-05 26.5 4.6 26 187-212 4-29 (32)
23 PF04977 DivIC: Septum formati 85.9 1.8 3.9E-05 31.1 4.7 33 179-211 19-51 (80)
24 PRK15192 fimbrial chaperone Bc 85.1 9.2 0.0002 34.2 9.8 104 8-128 24-141 (234)
25 PF06005 DUF904: Protein of un 84.8 1.6 3.4E-05 32.2 4.0 37 175-211 9-52 (72)
26 PRK00888 ftsB cell division pr 84.5 2.2 4.7E-05 33.5 4.9 35 178-212 28-62 (105)
27 KOG4343 bZIP transcription fac 84.1 4.2 9.1E-05 40.6 7.6 49 183-231 308-369 (655)
28 PF05377 FlaC_arch: Flagella a 84.1 3.8 8.2E-05 28.7 5.3 35 179-213 2-36 (55)
29 PRK15208 long polar fimbrial c 83.7 14 0.0003 32.7 10.3 85 7-97 22-112 (228)
30 PRK15422 septal ring assembly 82.4 1.2 2.6E-05 33.4 2.5 35 174-208 29-63 (79)
31 PF10482 CtIP_N: Tumour-suppre 82.3 1.7 3.7E-05 34.9 3.4 30 178-207 90-119 (120)
32 PF06280 DUF1034: Fn3-like dom 81.9 4.3 9.3E-05 31.4 5.7 55 22-76 7-82 (112)
33 COG4467 Regulator of replicati 81.7 1.6 3.5E-05 34.7 3.1 41 176-216 14-54 (114)
34 PRK15188 fimbrial chaperone pr 81.3 22 0.00047 31.7 10.5 110 7-128 28-143 (228)
35 KOG3119 Basic region leucine z 79.9 3.5 7.6E-05 37.5 5.1 40 175-214 213-252 (269)
36 PF04744 Monooxygenase_B: Mono 79.3 9.3 0.0002 36.5 7.8 65 8-74 249-335 (381)
37 COG3121 FimC P pilus assembly 78.9 36 0.00077 30.3 11.2 110 8-129 29-145 (235)
38 COG3074 Uncharacterized protei 78.3 1.8 3.9E-05 31.9 2.2 34 174-207 29-62 (79)
39 TIGR03752 conj_TIGR03752 integ 77.9 4.9 0.00011 39.5 5.7 39 174-212 56-94 (472)
40 PRK15254 fimbrial chaperone pr 77.6 35 0.00076 30.5 10.8 86 7-97 17-110 (239)
41 PF10633 NPCBM_assoc: NPCBM-as 77.4 4.4 9.6E-05 29.3 4.2 56 22-77 4-63 (78)
42 PRK15195 fimbrial chaperone pr 77.3 30 0.00066 30.6 10.2 84 7-94 26-115 (229)
43 smart00809 Alpha_adaptinC2 Ada 76.8 17 0.00038 27.2 7.5 54 22-75 17-74 (104)
44 PRK14127 cell division protein 76.2 8.2 0.00018 30.7 5.6 40 179-218 32-71 (109)
45 PF06156 DUF972: Protein of un 75.1 5.9 0.00013 31.3 4.6 37 175-211 20-56 (107)
46 TIGR03079 CH4_NH3mon_ox_B meth 75.1 7.3 0.00016 37.2 5.9 54 22-75 281-355 (399)
47 PRK15422 septal ring assembly 74.3 5.3 0.00011 30.0 3.8 37 174-210 8-44 (79)
48 PRK13169 DNA replication intia 73.8 6.7 0.00015 31.2 4.6 35 176-210 21-55 (110)
49 smart00338 BRLZ basic region l 73.7 11 0.00025 26.4 5.4 33 180-212 29-61 (65)
50 PRK13922 rod shape-determining 73.5 6.7 0.00015 35.2 5.2 61 179-240 71-134 (276)
51 PF06005 DUF904: Protein of un 73.1 11 0.00025 27.6 5.4 37 175-211 23-59 (72)
52 PF07716 bZIP_2: Basic region 72.7 11 0.00024 25.7 4.9 29 183-211 24-52 (54)
53 smart00338 BRLZ basic region l 72.6 10 0.00022 26.6 4.9 32 183-214 25-56 (65)
54 TIGR02209 ftsL_broad cell divi 72.3 9.3 0.0002 27.9 4.9 34 178-211 25-58 (85)
55 PF14775 NYD-SP28_assoc: Sperm 72.0 9 0.00019 27.1 4.4 29 178-206 27-55 (60)
56 PRK15218 fimbrial chaperone pr 71.5 73 0.0016 28.2 11.5 108 8-128 20-138 (226)
57 PF01166 TSC22: TSC-22/dip/bun 70.8 13 0.00027 26.5 4.8 29 177-205 14-42 (59)
58 PRK10884 SH3 domain-containing 69.1 6.2 0.00013 34.6 3.8 37 175-211 123-159 (206)
59 COG3074 Uncharacterized protei 68.5 8.7 0.00019 28.3 3.8 33 176-208 10-42 (79)
60 PF00170 bZIP_1: bZIP transcri 68.4 18 0.00038 25.4 5.4 34 179-212 28-61 (64)
61 PF05506 DUF756: Domain of unk 67.8 20 0.00043 26.6 5.9 41 25-72 20-65 (89)
62 PRK15224 pili assembly chapero 67.2 94 0.002 27.8 11.2 81 9-97 31-118 (237)
63 PF00927 Transglut_C: Transglu 66.7 23 0.00049 27.0 6.1 56 20-75 12-77 (107)
64 PRK15233 putative fimbrial cha 65.4 93 0.002 28.1 10.6 77 13-97 47-130 (246)
65 PF04999 FtsL: Cell division p 65.3 15 0.00033 27.7 4.8 33 179-211 37-69 (97)
66 PF07334 IFP_35_N: Interferon- 63.7 14 0.0003 27.6 4.2 28 186-213 2-29 (76)
67 TIGR02449 conserved hypothetic 63.7 12 0.00027 27.0 3.8 37 175-211 5-41 (65)
68 KOG4797 Transcriptional regula 63.5 26 0.00056 28.0 5.8 30 184-213 67-96 (123)
69 PRK15274 putative periplasmic 62.9 1.2E+02 0.0026 27.5 11.5 83 10-97 30-120 (257)
70 PF00170 bZIP_1: bZIP transcri 62.5 22 0.00048 24.8 4.9 31 183-213 25-55 (64)
71 PF07716 bZIP_2: Basic region 61.0 23 0.0005 24.0 4.7 30 177-206 25-54 (54)
72 PF14197 Cep57_CLD_2: Centroso 60.5 25 0.00053 25.6 4.9 17 197-213 46-62 (69)
73 PRK00888 ftsB cell division pr 59.9 15 0.00032 28.8 4.0 30 176-205 33-62 (105)
74 TIGR00219 mreC rod shape-deter 59.8 20 0.00043 32.8 5.4 37 203-240 96-132 (283)
75 PF05103 DivIVA: DivIVA protei 59.8 16 0.00035 28.6 4.3 39 180-218 21-59 (131)
76 PRK15253 putative fimbrial ass 59.3 1.3E+02 0.0029 26.9 11.4 83 9-97 36-128 (242)
77 PF02183 HALZ: Homeobox associ 59.2 16 0.00035 24.4 3.5 33 175-207 10-42 (45)
78 KOG4005 Transcription factor X 58.5 44 0.00095 30.3 7.1 24 178-201 91-114 (292)
79 PF12808 Mto2_bdg: Micro-tubul 58.4 19 0.00041 24.9 3.8 22 190-211 28-49 (52)
80 PRK14127 cell division protein 57.3 18 0.0004 28.7 4.1 39 180-218 26-64 (109)
81 KOG4196 bZIP transcription fac 56.9 29 0.00062 28.6 5.2 30 182-211 79-108 (135)
82 PF01166 TSC22: TSC-22/dip/bun 56.6 17 0.00036 25.8 3.3 32 182-213 12-43 (59)
83 PF02753 PapD_C: Pili assembly 56.4 9.9 0.00022 26.6 2.3 44 29-72 1-45 (68)
84 PF02883 Alpha_adaptinC2: Adap 56.2 46 0.001 25.4 6.2 53 22-74 23-79 (115)
85 PF06305 DUF1049: Protein of u 54.9 18 0.00038 25.3 3.4 25 187-211 44-68 (68)
86 PF07407 Seadorna_VP6: Seadorn 53.1 18 0.00038 34.3 3.9 11 117-127 6-16 (420)
87 cd07429 Cby_like Chibby, a nuc 52.8 29 0.00063 27.6 4.5 30 185-214 73-102 (108)
88 KOG4196 bZIP transcription fac 52.8 31 0.00066 28.4 4.7 34 185-218 75-108 (135)
89 PF11611 DUF4352: Domain of un 52.7 66 0.0014 24.4 6.6 54 22-75 35-102 (123)
90 PF10224 DUF2205: Predicted co 52.6 20 0.00044 26.9 3.4 39 173-211 26-64 (80)
91 PF12709 Kinetocho_Slk19: Cent 50.8 38 0.00083 25.9 4.7 29 183-211 48-76 (87)
92 PF03980 Nnf1: Nnf1 ; InterPr 50.3 41 0.00088 26.0 5.0 32 181-212 77-108 (109)
93 PF15188 CCDC-167: Coiled-coil 50.3 17 0.00038 27.6 2.8 35 188-223 40-74 (85)
94 KOG0977 Nuclear envelope prote 50.1 23 0.0005 35.6 4.4 41 173-213 151-191 (546)
95 PRK09413 IS2 repressor TnpA; R 49.9 28 0.00062 27.4 4.2 32 186-217 73-104 (121)
96 PF07106 TBPIP: Tat binding pr 49.5 41 0.00088 28.0 5.3 18 177-194 86-103 (169)
97 PF04420 CHD5: CHD5-like prote 49.3 28 0.00061 29.1 4.2 16 196-211 71-86 (161)
98 PF08172 CASP_C: CASP C termin 48.9 31 0.00068 31.1 4.7 36 176-211 92-127 (248)
99 TIGR02745 ccoG_rdxA_fixG cytoc 48.4 96 0.0021 30.3 8.3 51 25-75 348-400 (434)
100 smart00340 HALZ homeobox assoc 47.4 40 0.00087 22.4 3.8 26 180-205 8-33 (44)
101 TIGR02449 conserved hypothetic 47.0 66 0.0014 23.2 5.3 31 180-210 24-54 (65)
102 PRK10265 chaperone-modulator p 46.7 48 0.001 25.5 4.9 30 180-209 67-96 (101)
103 TIGR02894 DNA_bind_RsfA transc 46.6 51 0.0011 28.0 5.4 32 181-212 101-132 (161)
104 PRK10803 tol-pal system protei 46.2 40 0.00086 30.4 5.0 32 180-211 57-88 (263)
105 PF14775 NYD-SP28_assoc: Sperm 45.1 69 0.0015 22.6 5.1 34 181-214 23-56 (60)
106 PRK15285 putative fimbrial cha 44.7 2.4E+02 0.0051 25.4 11.7 83 10-97 29-119 (250)
107 PF09738 DUF2051: Double stran 44.6 31 0.00067 32.1 4.1 38 172-209 86-123 (302)
108 PF10226 DUF2216: Uncharacteri 44.0 57 0.0012 28.5 5.3 34 180-213 44-77 (195)
109 PF15058 Speriolin_N: Sperioli 43.9 30 0.00065 30.3 3.6 31 177-207 5-35 (200)
110 PF12690 BsuPI: Intracellular 43.0 1.3E+02 0.0027 22.4 6.5 21 25-45 2-22 (82)
111 KOG1962 B-cell receptor-associ 42.5 22 0.00048 31.6 2.7 30 178-207 180-209 (216)
112 PF08781 DP: Transcription fac 42.3 34 0.00075 28.4 3.6 24 185-208 2-25 (142)
113 PF03173 CHB_HEX: Putative car 42.1 30 0.00064 29.3 3.3 34 41-74 69-104 (164)
114 PF11382 DUF3186: Protein of u 40.4 40 0.00087 31.2 4.2 30 182-211 37-66 (308)
115 PF00553 CBM_2: Cellulose bind 40.4 71 0.0015 24.3 5.0 52 24-75 14-85 (101)
116 smart00637 CBD_II CBD_II domai 40.4 1.5E+02 0.0032 21.8 6.7 47 26-72 9-75 (92)
117 KOG4005 Transcription factor X 40.1 47 0.001 30.2 4.3 31 183-213 89-119 (292)
118 COG4026 Uncharacterized protei 40.0 42 0.00091 30.3 4.0 37 174-210 132-168 (290)
119 COG4467 Regulator of replicati 39.8 56 0.0012 26.1 4.3 33 177-209 22-54 (114)
120 PF13815 Dzip-like_N: Iguana/D 38.8 84 0.0018 24.8 5.3 34 179-212 82-115 (118)
121 PF13473 Cupredoxin_1: Cupredo 38.8 1.7E+02 0.0036 22.0 7.0 53 9-73 31-83 (104)
122 PRK13922 rod shape-determining 38.7 28 0.0006 31.2 2.8 36 174-209 73-111 (276)
123 KOG0980 Actin-binding protein 38.2 97 0.0021 33.1 6.8 23 106-132 262-284 (980)
124 TIGR00219 mreC rod shape-deter 38.1 30 0.00064 31.7 2.9 31 179-209 75-109 (283)
125 PF04201 TPD52: Tumour protein 38.1 84 0.0018 26.7 5.4 35 179-213 31-65 (162)
126 PF08912 Rho_Binding: Rho Bind 37.9 98 0.0021 22.7 5.0 26 186-211 5-30 (69)
127 TIGR03752 conj_TIGR03752 integ 37.8 56 0.0012 32.3 4.8 25 181-205 70-94 (472)
128 PF06216 RTBV_P46: Rice tungro 37.5 47 0.001 30.5 4.0 35 184-218 78-112 (389)
129 COG2919 Septum formation initi 37.2 78 0.0017 25.0 4.9 33 179-211 52-84 (117)
130 PRK10884 SH3 domain-containing 36.8 43 0.00094 29.4 3.6 34 179-212 134-167 (206)
131 PF07558 Shugoshin_N: Shugoshi 36.6 46 0.00099 22.2 2.9 29 180-208 17-45 (46)
132 PF04102 SlyX: SlyX; InterPro 35.8 53 0.0011 23.6 3.4 32 183-214 17-48 (69)
133 PRK14143 heat shock protein Gr 35.4 1.8E+02 0.0038 26.2 7.3 38 176-213 66-103 (238)
134 TIGR02656 cyanin_plasto plasto 35.2 1.2E+02 0.0025 22.9 5.4 61 6-72 10-76 (99)
135 PF13600 DUF4140: N-terminal d 34.5 1E+02 0.0022 23.3 5.0 31 179-209 72-102 (104)
136 PRK05771 V-type ATP synthase s 34.5 50 0.0011 33.5 4.1 36 177-212 93-128 (646)
137 COG2433 Uncharacterized conser 34.4 51 0.0011 33.7 4.0 38 181-218 426-463 (652)
138 KOG4343 bZIP transcription fac 34.4 58 0.0013 32.8 4.4 34 182-215 300-333 (655)
139 PF04111 APG6: Autophagy prote 34.2 92 0.002 28.9 5.6 33 179-211 59-91 (314)
140 PF14645 Chibby: Chibby family 33.9 80 0.0017 25.2 4.4 28 185-212 72-99 (116)
141 PF04977 DivIC: Septum formati 33.8 98 0.0021 21.8 4.6 37 175-211 22-58 (80)
142 PF14796 AP3B1_C: Clathrin-ada 33.6 2.3E+02 0.0049 23.6 7.2 50 23-72 85-138 (145)
143 PF02403 Seryl_tRNA_N: Seryl-t 33.6 1.4E+02 0.003 22.7 5.7 33 178-210 68-100 (108)
144 PF08606 Prp19: Prp19/Pso4-lik 33.6 47 0.001 24.4 2.8 23 181-203 47-69 (70)
145 PRK10722 hypothetical protein; 33.5 96 0.0021 28.1 5.3 22 190-211 175-196 (247)
146 PF08172 CASP_C: CASP C termin 33.5 74 0.0016 28.7 4.6 36 173-208 96-131 (248)
147 PF11461 RILP: Rab interacting 33.3 75 0.0016 22.6 3.7 27 186-212 5-31 (60)
148 PRK14163 heat shock protein Gr 32.5 2.9E+02 0.0063 24.5 8.1 35 179-213 42-76 (214)
149 PF04880 NUDE_C: NUDE protein, 32.4 20 0.00044 30.5 0.8 21 191-211 24-44 (166)
150 PF07412 Geminin: Geminin; In 32.3 86 0.0019 27.6 4.7 26 185-210 133-158 (200)
151 PF05753 TRAP_beta: Translocon 32.1 2.4E+02 0.0053 24.1 7.4 25 22-47 37-61 (181)
152 PF14197 Cep57_CLD_2: Centroso 32.0 1.2E+02 0.0025 22.0 4.6 22 191-212 47-68 (69)
153 PF04728 LPP: Lipoprotein leuc 31.8 1.7E+02 0.0036 20.6 5.2 30 180-209 13-42 (56)
154 PHA00006 D external scaffoldin 31.6 20 0.00043 29.0 0.6 30 214-243 64-95 (151)
155 PRK10265 chaperone-modulator p 31.5 40 0.00088 25.9 2.3 24 195-218 75-98 (101)
156 PF13591 MerR_2: MerR HTH fami 31.5 66 0.0014 23.8 3.4 26 180-205 59-84 (84)
157 PTZ00454 26S protease regulato 31.3 84 0.0018 30.1 4.9 34 178-211 30-63 (398)
158 cd04766 HTH_HspR Helix-Turn-He 31.3 1E+02 0.0022 22.8 4.4 23 185-207 66-88 (91)
159 PRK15308 putative fimbrial pro 31.2 3.9E+02 0.0084 23.9 10.5 85 6-98 16-118 (234)
160 KOG3119 Basic region leucine z 30.5 45 0.00097 30.3 2.8 39 183-221 214-252 (269)
161 PF04111 APG6: Autophagy prote 30.4 1.1E+02 0.0025 28.3 5.5 6 189-194 55-60 (314)
162 PF12325 TMF_TATA_bd: TATA ele 30.3 1.1E+02 0.0024 24.6 4.7 20 183-202 36-55 (120)
163 PF08961 DUF1875: Domain of un 30.2 17 0.00037 32.5 0.0 37 174-210 126-162 (243)
164 PRK00295 hypothetical protein; 30.1 91 0.002 22.4 3.8 29 184-212 19-47 (68)
165 PF15035 Rootletin: Ciliary ro 29.8 1.2E+02 0.0026 26.0 5.2 36 176-211 73-108 (182)
166 PF07798 DUF1640: Protein of u 29.8 94 0.002 26.2 4.5 33 180-212 61-94 (177)
167 PF05529 Bap31: B-cell recepto 29.7 70 0.0015 27.1 3.7 32 186-217 156-187 (192)
168 PHA03155 hypothetical protein; 29.7 80 0.0017 25.4 3.7 21 188-208 12-32 (115)
169 PF07407 Seadorna_VP6: Seadorn 29.4 42 0.00092 31.8 2.4 25 187-211 35-59 (420)
170 PF01486 K-box: K-box region; 29.1 1E+02 0.0023 23.3 4.3 27 181-207 72-98 (100)
171 PRK04406 hypothetical protein; 29.1 94 0.002 22.9 3.8 36 178-213 19-54 (75)
172 PF10473 CENP-F_leu_zip: Leuci 29.1 1.2E+02 0.0026 25.1 4.8 26 185-210 53-78 (140)
173 PF08606 Prp19: Prp19/Pso4-lik 28.9 1.4E+02 0.003 21.9 4.6 28 185-212 9-36 (70)
174 PF12711 Kinesin-relat_1: Kine 28.8 1.6E+02 0.0034 22.5 5.0 35 180-214 27-67 (86)
175 PF10883 DUF2681: Protein of u 28.7 89 0.0019 23.9 3.7 27 181-207 27-53 (87)
176 PF14802 TMEM192: TMEM192 fami 28.7 1E+02 0.0022 27.7 4.6 30 181-210 206-235 (236)
177 PF03234 CDC37_N: Cdc37 N term 28.4 1.4E+02 0.0031 25.6 5.3 37 182-218 129-175 (177)
178 PF04880 NUDE_C: NUDE protein, 28.4 53 0.0012 28.0 2.7 23 185-207 25-47 (166)
179 PF05377 FlaC_arch: Flagella a 28.3 1.2E+02 0.0026 21.3 3.9 36 174-209 4-39 (55)
180 KOG1962 B-cell receptor-associ 28.3 96 0.0021 27.6 4.4 24 187-210 175-198 (216)
181 KOG4571 Activating transcripti 28.2 64 0.0014 30.0 3.3 35 182-216 253-287 (294)
182 PRK09039 hypothetical protein; 28.2 73 0.0016 29.9 3.8 37 174-210 127-163 (343)
183 PF09738 DUF2051: Double stran 28.1 82 0.0018 29.3 4.1 27 185-211 220-246 (302)
184 PRK15249 fimbrial chaperone pr 28.0 1.3E+02 0.0028 27.0 5.3 42 28-70 177-219 (253)
185 PRK00736 hypothetical protein; 27.7 1.1E+02 0.0023 22.1 3.8 31 182-212 17-47 (68)
186 PF07705 CARDB: CARDB; InterP 27.6 2.2E+02 0.0047 20.3 5.7 54 22-75 18-72 (101)
187 PRK02119 hypothetical protein; 27.6 93 0.002 22.7 3.5 29 184-212 23-51 (73)
188 PRK03947 prefoldin subunit alp 27.4 1.1E+02 0.0024 24.4 4.4 37 176-212 100-136 (140)
189 PRK02793 phi X174 lysis protei 27.4 96 0.0021 22.5 3.6 31 183-213 21-51 (72)
190 PRK14147 heat shock protein Gr 27.4 1.8E+02 0.0039 24.7 5.8 33 181-213 22-54 (172)
191 PRK14157 heat shock protein Gr 27.3 3E+02 0.0064 24.7 7.3 34 180-213 80-113 (227)
192 KOG0971 Microtubule-associated 27.3 55 0.0012 35.1 3.0 38 176-213 338-390 (1243)
193 PF05308 Mito_fiss_reg: Mitoch 27.2 87 0.0019 28.4 4.0 25 179-203 117-141 (253)
194 PF10146 zf-C4H2: Zinc finger- 27.0 87 0.0019 28.0 3.9 46 178-223 61-113 (230)
195 PRK14872 rod shape-determining 26.9 1.2E+02 0.0026 28.8 5.0 17 226-242 105-121 (337)
196 PF14645 Chibby: Chibby family 26.8 76 0.0017 25.3 3.2 22 182-203 76-97 (116)
197 COG3599 DivIVA Cell division i 26.7 1.3E+02 0.0028 26.6 4.9 38 181-218 27-64 (212)
198 PRK14155 heat shock protein Gr 26.7 1.3E+02 0.0029 26.4 4.9 34 180-213 16-49 (208)
199 PF07412 Geminin: Geminin; In 26.7 83 0.0018 27.7 3.6 35 179-213 120-154 (200)
200 COG1422 Predicted membrane pro 26.6 1E+02 0.0022 27.1 4.2 56 176-231 71-136 (201)
201 PRK14162 heat shock protein Gr 26.5 1.8E+02 0.0039 25.4 5.7 36 178-213 40-75 (194)
202 PRK04325 hypothetical protein; 26.5 1.1E+02 0.0024 22.3 3.8 38 176-213 15-52 (74)
203 PF05529 Bap31: B-cell recepto 26.4 1.2E+02 0.0026 25.7 4.5 33 179-211 156-188 (192)
204 cd00632 Prefoldin_beta Prefold 26.3 1.1E+02 0.0023 23.5 3.9 34 177-210 70-103 (105)
205 KOG3156 Uncharacterized membra 26.3 1.2E+02 0.0026 27.0 4.6 34 179-212 103-137 (220)
206 PLN02678 seryl-tRNA synthetase 26.2 1.5E+02 0.0034 29.0 5.8 35 177-211 71-105 (448)
207 PF10498 IFT57: Intra-flagella 26.1 56 0.0012 31.1 2.7 37 173-209 283-319 (359)
208 PF12958 DUF3847: Protein of u 26.0 2.2E+02 0.0048 21.6 5.4 33 178-210 2-34 (86)
209 TIGR01242 26Sp45 26S proteasom 25.9 80 0.0017 29.4 3.7 34 178-211 7-40 (364)
210 PF09311 Rab5-bind: Rabaptin-l 25.8 34 0.00073 29.1 1.0 34 181-214 12-45 (181)
211 PF10846 DUF2722: Protein of u 25.7 1.1E+02 0.0025 29.7 4.7 48 179-226 57-108 (416)
212 TIGR03689 pup_AAA proteasome A 25.6 64 0.0014 32.2 3.1 39 178-216 9-47 (512)
213 PF06030 DUF916: Bacterial pro 25.6 1.6E+02 0.0034 23.4 4.9 29 17-45 21-49 (121)
214 PF04728 LPP: Lipoprotein leuc 25.5 2.4E+02 0.0053 19.8 5.1 30 179-208 5-34 (56)
215 COG1792 MreC Cell shape-determ 25.2 1.5E+02 0.0033 27.1 5.2 50 193-242 85-134 (284)
216 PF12329 TMF_DNA_bd: TATA elem 25.1 2.3E+02 0.005 20.6 5.3 36 180-215 36-71 (74)
217 PF11382 DUF3186: Protein of u 25.0 1.4E+02 0.003 27.6 5.0 29 185-213 33-61 (308)
218 PRK14140 heat shock protein Gr 25.0 1.8E+02 0.0038 25.3 5.4 36 178-213 38-73 (191)
219 KOG2577 Transcription factor E 25.0 97 0.0021 29.6 4.0 37 175-211 142-178 (354)
220 PF11544 Spc42p: Spindle pole 24.8 1.7E+02 0.0036 21.9 4.4 35 178-212 20-54 (76)
221 KOG4797 Transcriptional regula 24.8 99 0.0022 24.8 3.4 27 179-205 69-95 (123)
222 PF12325 TMF_TATA_bd: TATA ele 24.7 2E+02 0.0044 23.1 5.3 32 180-211 47-81 (120)
223 TIGR02209 ftsL_broad cell divi 24.7 1.9E+02 0.0041 20.8 4.9 27 179-205 33-59 (85)
224 PF01763 Herpes_UL6: Herpesvir 24.5 96 0.0021 31.4 4.1 38 176-213 369-406 (557)
225 PRK09413 IS2 repressor TnpA; R 24.5 1.9E+02 0.004 22.7 5.1 32 180-211 74-105 (121)
226 COG3121 FimC P pilus assembly 24.3 1.4E+02 0.003 26.5 4.8 43 27-71 165-209 (235)
227 PF05103 DivIVA: DivIVA protei 24.2 39 0.00084 26.4 1.1 36 178-213 26-61 (131)
228 PRK14139 heat shock protein Gr 24.1 2E+02 0.0043 24.9 5.5 35 179-213 34-68 (185)
229 KOG4010 Coiled-coil protein TP 24.0 2E+02 0.0044 25.2 5.4 34 179-212 46-79 (208)
230 PRK14158 heat shock protein Gr 24.0 1.8E+02 0.0038 25.4 5.2 35 179-213 42-76 (194)
231 PRK14151 heat shock protein Gr 23.8 1.9E+02 0.0042 24.7 5.3 33 181-213 24-56 (176)
232 KOG3650 Predicted coiled-coil 23.7 83 0.0018 24.8 2.7 37 174-210 67-103 (120)
233 PF05812 Herpes_BLRF2: Herpesv 23.6 1.4E+02 0.003 24.1 4.1 22 187-208 6-27 (118)
234 PF10234 Cluap1: Clusterin-ass 23.5 1.5E+02 0.0032 27.3 4.8 44 178-221 177-223 (267)
235 PF12709 Kinetocho_Slk19: Cent 23.4 2.1E+02 0.0045 21.9 4.8 30 185-214 43-72 (87)
236 PF01105 EMP24_GP25L: emp24/gp 23.4 27 0.00058 28.2 0.0 56 176-231 118-173 (183)
237 PF11180 DUF2968: Protein of u 23.4 2.7E+02 0.0059 24.3 6.1 39 180-218 150-189 (192)
238 PF13600 DUF4140: N-terminal d 23.2 1.9E+02 0.004 21.8 4.7 30 184-213 70-99 (104)
239 PRK13729 conjugal transfer pil 23.1 85 0.0018 31.1 3.3 12 202-213 108-119 (475)
240 PF13815 Dzip-like_N: Iguana/D 23.1 98 0.0021 24.4 3.2 31 182-212 78-108 (118)
241 KOG4657 Uncharacterized conser 23.1 1.5E+02 0.0033 26.7 4.6 31 182-212 91-121 (246)
242 smart00605 CW CW domain. 23.0 1E+02 0.0022 23.0 3.1 23 27-49 57-80 (94)
243 PF00631 G-gamma: GGL domain; 22.9 62 0.0013 22.9 1.8 18 192-209 3-20 (68)
244 TIGR02268 Myxococcus xanthus p 22.9 92 0.002 29.0 3.3 27 188-214 135-161 (295)
245 PRK14154 heat shock protein Gr 22.9 2E+02 0.0044 25.3 5.4 35 179-213 54-88 (208)
246 KOG3863 bZIP transcription fac 22.8 1.1E+02 0.0024 31.2 4.1 37 179-215 513-549 (604)
247 PF06632 XRCC4: DNA double-str 22.8 1.3E+02 0.0027 28.6 4.3 30 183-212 136-165 (342)
248 PF11365 DUF3166: Protein of u 22.8 1.1E+02 0.0024 23.8 3.3 42 170-211 1-42 (96)
249 KOG0972 Huntingtin interacting 22.8 54 0.0012 30.7 1.8 37 173-209 290-326 (384)
250 PF10224 DUF2205: Predicted co 22.7 2.4E+02 0.0052 21.1 5.0 36 179-214 25-60 (80)
251 KOG0995 Centromere-associated 22.7 1.3E+02 0.0029 30.5 4.6 38 177-214 287-324 (581)
252 PF13205 Big_5: Bacterial Ig-l 22.5 3.1E+02 0.0068 20.0 7.1 56 14-72 26-84 (107)
253 PRK11239 hypothetical protein; 22.4 1.5E+02 0.0034 26.3 4.5 28 187-214 186-213 (215)
254 TIGR01242 26Sp45 26S proteasom 22.1 1.6E+02 0.0034 27.4 4.9 38 181-218 3-40 (364)
255 PF04201 TPD52: Tumour protein 22.0 1.2E+02 0.0026 25.9 3.6 33 174-206 33-65 (162)
256 COG1792 MreC Cell shape-determ 22.0 1.5E+02 0.0033 27.1 4.6 27 184-210 83-109 (284)
257 PRK13902 alaS alanyl-tRNA synt 22.0 1.6E+02 0.0035 31.5 5.3 36 176-211 753-788 (900)
258 PF05308 Mito_fiss_reg: Mitoch 21.9 84 0.0018 28.5 2.9 18 196-213 120-137 (253)
259 PF09640 DUF2027: Domain of un 21.9 1.5E+02 0.0031 25.3 4.1 67 26-99 19-85 (162)
260 PF10458 Val_tRNA-synt_C: Valy 21.8 2.2E+02 0.0047 20.0 4.5 22 191-212 4-25 (66)
261 PHA03162 hypothetical protein; 21.8 1.4E+02 0.0031 24.6 3.8 20 179-198 15-34 (135)
262 PRK00846 hypothetical protein; 21.7 1.6E+02 0.0034 22.0 3.8 35 179-213 22-56 (77)
263 cd00890 Prefoldin Prefoldin is 21.7 1.4E+02 0.003 23.0 3.8 31 179-209 96-126 (129)
264 KOG0483 Transcription factor H 21.5 1.3E+02 0.0029 26.3 3.9 35 177-211 112-146 (198)
265 PF08277 PAN_3: PAN-like domai 21.5 1.2E+02 0.0025 21.0 3.0 19 25-43 53-71 (71)
266 PF04999 FtsL: Cell division p 21.5 2.3E+02 0.0049 21.1 4.8 29 185-213 36-64 (97)
267 KOG2264 Exostosin EXT1L [Signa 21.5 86 0.0019 32.1 3.0 38 174-211 97-134 (907)
268 PRK02119 hypothetical protein; 21.4 2.7E+02 0.0058 20.3 5.0 35 177-211 23-57 (73)
269 PF08232 Striatin: Striatin fa 21.4 2.2E+02 0.0048 23.1 5.0 28 179-206 27-54 (134)
270 PF07028 DUF1319: Protein of u 21.2 2.7E+02 0.0059 22.7 5.4 31 191-221 60-90 (126)
271 KOG4191 Histone acetyltransfer 21.1 1.9E+02 0.0041 28.7 5.2 34 177-210 401-434 (516)
272 KOG0804 Cytoplasmic Zn-finger 21.1 1.7E+02 0.0037 29.0 4.9 34 178-211 383-416 (493)
273 PF14054 DUF4249: Domain of un 20.9 4E+02 0.0086 23.5 7.1 49 25-74 61-110 (298)
274 TIGR02338 gimC_beta prefoldin, 20.6 1.6E+02 0.0034 22.8 3.9 35 176-210 73-107 (110)
275 PF04340 DUF484: Protein of un 20.6 1.8E+02 0.0039 25.2 4.7 30 181-210 51-83 (225)
276 KOG2829 E2F-like protein [Tran 20.6 87 0.0019 29.3 2.7 27 182-208 130-156 (326)
277 PF04102 SlyX: SlyX; InterPro 20.5 2.1E+02 0.0045 20.4 4.2 35 178-212 19-53 (69)
278 PF06548 Kinesin-related: Kine 20.4 2.1E+02 0.0045 28.4 5.3 21 194-214 451-471 (488)
279 KOG3865 Arrestin [Signal trans 20.4 1.4E+02 0.0031 28.4 4.0 71 1-75 189-277 (402)
280 PRK14872 rod shape-determining 20.3 94 0.002 29.4 2.9 21 187-207 60-80 (337)
No 1
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.4e-28 Score=212.50 Aligned_cols=137 Identities=47% Similarity=0.741 Sum_probs=122.2
Q ss_pred CCCCCcceEEeC-CeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 1 MMSTGELLNIEP-QELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 1 mm~~~~lL~I~P-~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
|++.+.+|.|+| .+|.|++++++++.+.|+|+|+++.++|||||||+|++||||||.|+|.||++++|.|.+|+....|
T Consensus 2 ~~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P 81 (218)
T KOG0439|consen 2 MLETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSP 81 (218)
T ss_pred CccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCc
Confidence 667789999999 5999999999999999999999999999999999999999999999999999999999999987789
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccC--CCcceEEEeEEEEeCCCCCCCCCCCC
Q 026049 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA--GHHVEECKLRVLYVAPPRPPSPVHEG 139 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~--~~~i~e~KLrv~f~~p~~~~s~~~~~ 139 (244)
.|++|+|||+||++.++.+ +..++ .++|.... +..+.+.+++|.|..|+.+++....+
T Consensus 82 ~d~~~r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 141 (218)
T KOG0439|consen 82 PDFKSRHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVAKL 141 (218)
T ss_pred hhhcccceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccccc
Confidence 9999999999999999987 33344 47777665 78899999999999988877665444
No 2
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]
Probab=99.95 E-value=4.9e-28 Score=208.17 Aligned_cols=119 Identities=35% Similarity=0.602 Sum_probs=108.7
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC-CCCCCCc
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKD 86 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p-~d~~~kD 86 (244)
+.|+|. +.|..|+.+..++.+.+.|++..+|+||||||+|+.||||||.|+|.|++++.|.|++|++++.| +|.+|+|
T Consensus 3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd 81 (242)
T COG5066 3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD 81 (242)
T ss_pred eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence 456664 45666999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred eEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 87 KFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 87 KFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
|||||+...+.+.+..|+. ++|....+.-|++.||+|+|.-
T Consensus 82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse 122 (242)
T COG5066 82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSE 122 (242)
T ss_pred eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeec
Confidence 9999999999887777885 9999888888999999999983
No 3
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=99.89 E-value=7.8e-23 Score=158.57 Aligned_cols=91 Identities=40% Similarity=0.699 Sum_probs=77.1
Q ss_pred eEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCCc
Q 026049 8 LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKD 86 (244)
Q Consensus 8 L~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kD 86 (244)
|.|+|. .+.|..++++...+.|+|+|+++++||||||||+|.+|+|+|+.|+|.||+++.|.|++++....+.. ..+|
T Consensus 2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I~~~~~~~~~~~-~~~d 80 (109)
T PF00635_consen 2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITITFQPFDFEPSN-KKKD 80 (109)
T ss_dssp CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEEEE-SSSTTTTS-TSSE
T ss_pred eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEEEEEecccCCCC-CCCC
Confidence 689997 89999999999999999999999999999999999999999999999999999999999998655443 2399
Q ss_pred eEEEEEEEcCCCC
Q 026049 87 KFLLQGVVASPGA 99 (244)
Q Consensus 87 KFlVqs~~v~~~~ 99 (244)
||+|+++.++++.
T Consensus 81 kf~I~~~~~~~~~ 93 (109)
T PF00635_consen 81 KFLIQSIVVPDNA 93 (109)
T ss_dssp EEEEEEEEE-TT-
T ss_pred EEEEEEEEcCCCc
Confidence 9999999998765
No 4
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=98.54 E-value=1.6e-06 Score=66.45 Aligned_cols=70 Identities=23% Similarity=0.434 Sum_probs=61.4
Q ss_pred cceEEeCCeeeeecc-CCCeeEEEEEEEcCCCCeEEEEeeecC--CCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 6 ELLNIEPQELQFPFE-LRKQISCSLQLSNKTDNYVAFKVKTTN--PKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 6 ~lL~I~P~eL~F~~~-~~~~~~~~L~L~N~s~~~VAFKVKTT~--P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
..|.++|.+|.|-.- .+......++|+|.+..+..|+|+.-. ...|.|.|..|+|.||++.++.|++.+.
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~ 74 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPT 74 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeC
Confidence 468999999999874 567778999999999999999997643 4689999999999999999999999954
No 5
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=96.84 E-value=0.017 Score=45.53 Aligned_cols=107 Identities=19% Similarity=0.263 Sum_probs=71.4
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC---C------CcEEEeCCCeeeCCCCeEEEEEEeccCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN---P------KKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~---P------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 78 (244)
|.|+|..+.|... .....++|+|.++.++.+.+.... . ..+.|-|+.-.|+||++..|.| +... ..
T Consensus 2 i~i~~trii~~~~---~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~-~~ 76 (122)
T PF00345_consen 2 IQISPTRIIFNES---QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGS-KL 76 (122)
T ss_dssp EEESSSEEEEETT---SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECS-GS
T ss_pred EEEccEEEEEeCC---CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecC-CC
Confidence 6788998888863 347899999999999999987764 1 2689999999999999999999 5533 33
Q ss_pred CCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEe
Q 026049 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (244)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~ 127 (244)
|.+....-++.+..++..... .+ .+..-.....+.+++.|.
T Consensus 77 ~~~~E~~yrl~~~~iP~~~~~--~~------~~~~v~i~~~~~i~v~~r 117 (122)
T PF00345_consen 77 PIDRESLYRLSFREIPPSEAE--NE------SKNGVQIALRYSIPVFYR 117 (122)
T ss_dssp -SSS-EEEEEEEEEEESCCTT--SS------SSSEEEEEEEEEEEEEEE
T ss_pred CCCceEEEEEEEEEEeccccc--cc------ccceEEEEEEEEEEEEEC
Confidence 444333444455555544310 00 011112345677787776
No 6
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=92.43 E-value=1.6 Score=38.63 Aligned_cols=106 Identities=16% Similarity=0.086 Sum_probs=68.9
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCC-----CcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP-----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 81 (244)
-|.+.|..+.|... .....++|+|.++.++.-....... .-|-|-|+.-.|+||+...|.|.... ..|.|
T Consensus 25 ~v~l~~tRvi~~~~---~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRii~~~--~lp~d 99 (230)
T PRK09918 25 GMVPETSVVIVEES---DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRFILKS--GSPLN 99 (230)
T ss_pred eEEEccEEEEEECC---CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEEEECC--CCCCC
Confidence 46777888888864 4568999999999876666544221 35999999999999999999998764 24554
Q ss_pred CCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 82 MQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 82 ~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
.. -=|.+-...+|+.... +..=+.....++++-|.+
T Consensus 100 rE--s~f~l~v~~IP~~~~~---------~~~l~ia~r~~iklfyRP 135 (230)
T PRK09918 100 TE--HLLRVSFEGVPPKPGG---------KNKVVMPIRQDLPVLIQP 135 (230)
T ss_pred ee--EEEEEEEEEcCCCCCC---------CCEEEEEEEeEEEEEEeC
Confidence 22 2244444445532110 000122445678887773
No 7
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=92.37 E-value=0.9 Score=43.70 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=52.4
Q ss_pred eeeeeccCCCeeEEEEE-EEcCCCCeEEEEeeecC------------CCcEEEeCCCeeeCCCCeEEEEEEeccCC
Q 026049 14 ELQFPFELRKQISCSLQ-LSNKTDNYVAFKVKTTN------------PKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 14 eL~F~~~~~~~~~~~L~-L~N~s~~~VAFKVKTT~------------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (244)
.|.|.-..+......|. |.|.+..-|-|..+--. ...|......|+|.||++..+.|++++..
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~s~~ 313 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFKSRK 313 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEeCCC
Confidence 68888877766666666 99999999999976533 35689999999999999999999999864
No 8
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=91.44 E-value=2.4 Score=37.99 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=61.6
Q ss_pred cceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCC----------cEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPK----------KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 6 ~lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~----------~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
--|.+.|..+.|+.. .....++|.|.++.++.-......-+ -|.|-|+.--|+||+...|.|.....
T Consensus 25 A~i~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 25 ADIVISGTRIIYKSD---QKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred eeEEeCceEEEEeCC---CceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeCCC
Confidence 347788888888863 35689999999998877666553221 39999999999999999999998753
Q ss_pred CCCCCCCCCCceEEEEEEEcCC
Q 026049 76 KEAPPDMQCKDKFLLQGVVASP 97 (244)
Q Consensus 76 ~e~p~d~~~kDKFlVqs~~v~~ 97 (244)
..+|.|...- |-+....+|+
T Consensus 102 ~~lP~DrESl--f~lnv~eIP~ 121 (246)
T PRK09926 102 TALPKDRESV--FWFNVLEVPP 121 (246)
T ss_pred CCCCCCceEE--EEEEeeecCC
Confidence 2366653333 4444444443
No 9
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.30 E-value=0.59 Score=31.33 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=32.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+..|+-+.+....|..+-++|.+||+.|+.|+..|+...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888889999999999999999999999988654
No 10
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=91.00 E-value=2.6 Score=37.98 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=59.1
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C-----CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P-----KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~------P-----~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
-|.|.|..+.|+.. .....++|.|.++.++.-...+.. | .-|-|-|+.--|+||+...|.|.....
T Consensus 29 ~l~l~~TRviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~ 105 (253)
T PRK15249 29 SVTILGSRIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYNNT 105 (253)
T ss_pred EEEeCceEEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEcCC
Confidence 47788888998764 346899999999887665554321 1 139999999999999999999998753
Q ss_pred CCCCCCCCCCceEEEEEEE
Q 026049 76 KEAPPDMQCKDKFLLQGVV 94 (244)
Q Consensus 76 ~e~p~d~~~kDKFlVqs~~ 94 (244)
...|.|...--.|.|+.++
T Consensus 106 ~~lP~DRESlf~lnv~eIP 124 (253)
T PRK15249 106 KKLPQDRESVFWFNVLQVP 124 (253)
T ss_pred CCCCCCceEEEEEEeeecC
Confidence 2456653333333344443
No 11
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.51 E-value=1.1 Score=35.09 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=36.2
Q ss_pred EEEEEEEcCCCCeEEEEeeecCCCcEEE-eCCCee-eCCCCeEEEEEEeccCC
Q 026049 26 SCSLQLSNKTDNYVAFKVKTTNPKKYCV-RPNTGV-VLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P~~Y~V-rP~~Gi-I~P~~s~~V~Itlq~~~ 76 (244)
...++|.|.++++..|.|+...+..+.+ .|...+ |.||++..+.|.+....
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-G
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECH
Confidence 4699999999999999999988889988 775554 89999999988887653
No 12
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.31 E-value=0.32 Score=38.44 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=26.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
++.+..++.+.+..|......+.+||..|+-|..+||..
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777777777777777777777777754
No 13
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=90.25 E-value=12 Score=33.39 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=67.8
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeec------------CCCcEEEeCCCeeeCCCCeEEEEEEecc
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT------------NPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT------------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~ 74 (244)
-+.+++..+.|+.. .....++|.|.++++..=..... ....|.|-|+.--|+||+...+.|....
T Consensus 27 ~v~l~~TRvIy~~~---~~~~sv~l~N~~~~p~LvQswv~~~~~~~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 27 GVVVGGTRFIFPAD---RESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred eEEeCceEEEEcCC---CceEEEEEEeCCCCcEEEEEEcccCccccCcccccccCCEEEcCCeEEECCCCceEEEEEECC
Confidence 46677778888863 35689999999998643333211 1124999999999999999999999875
Q ss_pred CCCCCCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEe
Q 026049 75 QKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (244)
Q Consensus 75 ~~e~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~ 127 (244)
...+|.|.. .=|-+-...+|+..+.. . .=......+||+-|.
T Consensus 104 ~~~LP~DRE--Slf~lnv~~IPp~~~~~----n-----~L~iair~riKLFyR 145 (236)
T PRK11385 104 SDILPVDRE--TLFELSIASVPSGKVEN----Q-----SVKVAMRSVFKLFWR 145 (236)
T ss_pred CCCCCCCce--EEEEEEEEecCCCcCCC----c-----eEEEEEEeeEEEEEc
Confidence 334676633 33444444445421100 0 012345677888776
No 14
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=90.20 E-value=7.6 Score=34.30 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=69.5
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC--------CCcEEEeCCCeeeCCCCeEEEEEEeccCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN--------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~--------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 78 (244)
-|.++|..+.|... .-...++|.|.++.++.-...+.. ..-|-|-|+.--|+||+...|.|..... ..
T Consensus 23 ~i~l~~TRvi~~~~---~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~l 98 (227)
T PRK15299 23 GINIGTTRVIFHGD---AKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGG-NL 98 (227)
T ss_pred eEEECceEEEEeCC---CcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEECCC-CC
Confidence 47788888888875 346899999998877655543321 1249999999999999999999987653 35
Q ss_pred CCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeCC
Q 026049 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (244)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p 129 (244)
|.|.. .=|-+....+|+.... +-. . .=......++++.|.++
T Consensus 99 P~DrE--slf~lnv~eIP~~~~~-~~~-n-----~l~iavr~riKLfyRP~ 140 (227)
T PRK15299 99 PEDRE--SLYWLDIKSIPSSNPD-NKH-N-----TLMLAVKAEFKLIYRPK 140 (227)
T ss_pred CCcce--EEEEEEeEecCCCCcc-ccc-c-----eEEEEEeeeeeEEEccc
Confidence 66533 2344444444442110 000 0 00223456788888743
No 15
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=90.02 E-value=1.8 Score=28.49 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred EEEEcCCCCeE-EEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 026049 29 LQLSNKTDNYV-AFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 29 L~L~N~s~~~V-AFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 72 (244)
.+++|.++.++ ..+|+| +=+-..+......|.||++..|.|+.
T Consensus 2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEEEC
Confidence 57899999776 667776 46888888899999999999999873
No 16
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=89.31 E-value=9.2 Score=34.02 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=57.6
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC------CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 81 (244)
+.+++..+.|+.. .....++|.|.++.++.-...... ..-|.|-|+.-.|+||+...|.|..... ..|.|
T Consensus 24 v~l~~TRvIy~~~---~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~~~-~LP~D 99 (229)
T PRK15211 24 FVLNGTRFIYDEG---RKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKTDS-ALPKD 99 (229)
T ss_pred EEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 6677778888863 346899999999886443332211 1249999999999999999999998753 46666
Q ss_pred CCCCceEEEEEEEcCC
Q 026049 82 MQCKDKFLLQGVVASP 97 (244)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (244)
.. -=|-+-...+|+
T Consensus 100 RE--Slf~lnv~~IP~ 113 (229)
T PRK15211 100 RE--SLFWLNVQEIPP 113 (229)
T ss_pred ce--EEEEEEEEEcCC
Confidence 33 334444444443
No 17
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=88.72 E-value=5.3 Score=35.62 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=59.2
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC------CC----cEEEeCCCeeeCCCCeEEEEEEeccCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------PK----KYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~------P~----~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (244)
-|.+.+..+.|+.. .....++|.|.++.++.=...... |. -|.|-|+.--|+|++...|.|......
T Consensus 11 ~v~l~~TRvI~~~~---~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~~ 87 (233)
T PRK15246 11 AVNIDRTRIIFASD---DVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLSSRQ 87 (233)
T ss_pred EEEECceEEEEcCC---CceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEECCCC
Confidence 36788888888863 356899999999886543332221 11 499999999999999999999987533
Q ss_pred CCCCCCCCCceEEEEEEEcCC
Q 026049 77 EAPPDMQCKDKFLLQGVVASP 97 (244)
Q Consensus 77 e~p~d~~~kDKFlVqs~~v~~ 97 (244)
.+|.|.. -=|-+....+|+
T Consensus 88 ~LP~DRE--Slf~lnv~~IP~ 106 (233)
T PRK15246 88 QLATDRE--SLFWLNIYQIPP 106 (233)
T ss_pred CCCCCce--EEEEEEEEEcCC
Confidence 4666522 234444444554
No 18
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=87.25 E-value=17 Score=32.56 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=69.2
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCC-CeEEEEeeecCC-------CcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTTNP-------KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~-~~VAFKVKTT~P-------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
|.+++..+.|+.. .....++|+|.++ .+..-....... .-|-|-|+.--|+||+...|.|...+....|
T Consensus 39 v~l~~TRvIy~~~---~~~~sl~v~N~~~~~p~LvQsWvd~~~~~~~~~~pFivtPPlfrl~p~~~q~lRIi~~~~~~LP 115 (243)
T PRK15290 39 VVIGGTRVVYLSN---NPDKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEKVLRIIHTKGVSLP 115 (243)
T ss_pred EEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcccCCEEEcCCeEEECCCCceEEEEEEcCCCCCC
Confidence 6777778888863 3467999999986 456555544311 1399999999999999999999987533467
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
.|.. -=|-+....+|+.....+ +..=......++++-|.+
T Consensus 116 ~DRE--Slf~lnv~eIPp~~~~~~-------~n~L~iair~rIKlFyRP 155 (243)
T PRK15290 116 DDRE--SVFWLNIKNIPPSASNKA-------TNSLEIAVKTRIKLFWRP 155 (243)
T ss_pred CCee--EEEEEEEEEcCCCCcccc-------cceEEEEEEEeeeEEEec
Confidence 6633 334444444554211000 000123456788888874
No 19
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=87.22 E-value=7.3 Score=34.49 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=57.2
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC-------CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
-+.+++..+.|+.. .....++|.|.++.++.=...... ..-|.|-|+.--|+||+...|.|..... .+|
T Consensus 20 ~i~l~~TRvI~~~~---~~~~si~i~N~~~~p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~~~-~LP 95 (226)
T PRK15295 20 SIVVGGTRLVFDGN---NDESSINVENKDSKANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGA-PLP 95 (226)
T ss_pred cEEeCceEEEEeCC---CceeEEEEEeCCCCcEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEECCC-CCC
Confidence 36777888888874 346899999998876442222211 1259999999999999999999988653 356
Q ss_pred CCCCCCceEEEEEEEcCC
Q 026049 80 PDMQCKDKFLLQGVVASP 97 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~ 97 (244)
.|... =|-+-...+|+
T Consensus 96 ~DrEs--lf~lnv~~IP~ 111 (226)
T PRK15295 96 ADRES--MYWLNIKGIPS 111 (226)
T ss_pred CCceE--EEEEEEEEcCC
Confidence 55322 24444444444
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.07 E-value=1 Score=35.81 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=20.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+...+.+.+..|..+...+.+||..|+-|..+||+.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666666666666544
No 21
>smart00340 HALZ homeobox associated leucin zipper.
Probab=87.03 E-value=1.9 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
.|.-|..--..|.+||.+||.|+..||..-.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLralk~ 36 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRALKL 36 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777777888899999999999997654
No 22
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=86.54 E-value=2.3 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+|..|++.|++..++|++.|++||.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999999999999999999985
No 23
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=85.95 E-value=1.8 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..+.+.+..|+.+...+.++|.+|++++..|+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457778899999999999999999999999994
No 24
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=85.08 E-value=9.2 Score=34.16 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=66.7
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeec----------C----CCcEEEeCCCeeeCCCCeEEEEEEec
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT----------N----PKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT----------~----P~~Y~VrP~~GiI~P~~s~~V~Itlq 73 (244)
+.++...+.|+.. .....++|.|.++.+ |=|++. . ..-|.|-|+.--|+|++...+.|...
T Consensus 24 i~l~~TRvIy~~~---~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl~p~~~~~lRI~~~ 98 (234)
T PRK15192 24 VVIGGTRFIYHAG---APALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENSMRVVYT 98 (234)
T ss_pred EEeCceEEEEcCC---CceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 5667777888763 346899999999876 555541 1 11399999999999999999999987
Q ss_pred cCCCCCCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 74 SQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 74 ~~~e~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
.. .+|.|.. -=|-+....+|+... . .+ .=......++|+-|.+
T Consensus 99 ~~-~LP~DRE--Slf~lnv~~IPp~~~--~--~n-----~l~iair~riKlFYRP 141 (234)
T PRK15192 99 GA-PLPADRE--SLFTLSIAAIPSGKP--E--AN-----RVQMAFRSALKLLYRP 141 (234)
T ss_pred CC-CCCCcce--EEEEEEEEecCCCCC--C--Cc-----EEEEEEEeeeeEEEcc
Confidence 53 4676632 334444444554211 0 00 0122345777877763
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.84 E-value=1.6 Score=32.16 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQI-------NNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~e-------n~~Lqqel~~l~ 211 (244)
++.++..|...|..|+.|...|.++ |..|++|...|+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666665 444444444444
No 26
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.49 E-value=2.2 Score=33.47 Aligned_cols=35 Identities=9% Similarity=-0.001 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+.++.+.+..+++|...+.++|+.|+.|+..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46788888899999999999999999999999874
No 27
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=84.08 E-value=4.2 Score=40.60 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhcCC-------CCCchhHHhhhhhe
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTY------LCHSSF-------KRPFSPEVCMMSLW 231 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~------~~~~~~-------~~~~~~~v~~~~~~ 231 (244)
.+-+.+|..|-+.|+.||..||++|+.|- +.-.++ |..-+.+|+|++++
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk~Rkvvaimv~maFi~ 369 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKKKRKVVAIMVVMAFII 369 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccccccchhhhhHHHHHHHHH
Confidence 34555555555555555555555555543 112344 55556777777766
No 28
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=84.06 E-value=3.8 Score=28.74 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+|+...+.++.-..+.++.||+.|+.+++.+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777888888888888887776543
No 29
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=83.73 E-value=14 Score=32.67 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=56.2
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCC-e-EEEEeeecCC----CcEEEeCCCeeeCCCCeEEEEEEeccCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN-Y-VAFKVKTTNP----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~-VAFKVKTT~P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 80 (244)
-|.+.|..+.|... .....++|.|.+++ + +.+..-.... .-|-|-|+.--|+||+...|.|..... ..|.
T Consensus 22 gv~l~~TRvI~~~~---~~~~si~i~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRIi~~~~-~lP~ 97 (228)
T PRK15208 22 GVALSSTRVIYDGS---KKEASLTVNNKSKTEEFLIQSWIDDANGNKKTPFIITPPLFKLDPTKNNVLRIVNITN-TLPQ 97 (228)
T ss_pred cEEeCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEECCCCCccCCEEECCCeEEECCCCccEEEEEECCC-CCCC
Confidence 47788888888874 34689999999863 3 3333221111 139999999999999999999987643 3566
Q ss_pred CCCCCceEEEEEEEcCC
Q 026049 81 DMQCKDKFLLQGVVASP 97 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~ 97 (244)
|... =|.+-.-.+|+
T Consensus 98 DrES--lf~lnv~eIP~ 112 (228)
T PRK15208 98 DRES--VYWINVKAIPA 112 (228)
T ss_pred CeeE--EEEEEEEEcCC
Confidence 5332 24444444443
No 30
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.39 E-value=1.2 Score=33.38 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=17.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+++++...+.+.+..+...|..|.++|++||+|..
T Consensus 29 ELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 29 ELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444445556666666666544
No 31
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=82.26 E-value=1.7 Score=34.88 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
....-.+.|..|+.|++.|.+||.+|++||
T Consensus 90 s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 90 SHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 334456689999999999999999999997
No 32
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=81.93 E-value=4.3 Score=31.45 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeec-----C---CCcEEE--e-----------CCCeeeCCCCeEEEEEEeccCC
Q 026049 22 RKQISCSLQLSNKTDNYVAFKVKTT-----N---PKKYCV--R-----------PNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VAFKVKTT-----~---P~~Y~V--r-----------P~~GiI~P~~s~~V~Itlq~~~ 76 (244)
++..+..++|+|.+++.+.|++.-. . .+.|.. . |..=.|.||++.+|.|++.+..
T Consensus 7 ~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 7 GNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp -SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--G
T ss_pred CCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEehh
Confidence 3446789999999999999997654 1 122321 1 1222578999999999988743
No 33
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=81.74 E-value=1.6 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=32.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSS 216 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~ 216 (244)
+.+.-++.+.+..|.+...++++||..||-|.++||+.++-
T Consensus 14 e~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 14 EEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 44555677788888888888888899999999888876544
No 34
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=81.29 E-value=22 Score=31.68 Aligned_cols=110 Identities=10% Similarity=0.177 Sum_probs=66.7
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCC-e-EEEEe-eec---CCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN-Y-VAFKV-KTT---NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~-VAFKV-KTT---~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 80 (244)
-+.+++..+.|+.. .-...++|+|.+++ + +.... ... ...-|-|-|+.--|+||+...+.|..... ..|.
T Consensus 28 gi~l~~TRvIy~~~---~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI~~~~~-~lP~ 103 (228)
T PRK15188 28 GIALGATRVIYPQG---SKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGP-SLPT 103 (228)
T ss_pred eEEECcEEEEEcCC---CceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 36777888888873 34689999999864 3 33221 111 11249999999999999999999998753 4666
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
|.. -=|-+....+|+.... +. .+..=......++|+-|.+
T Consensus 104 DRE--Slf~lnv~~IP~~~~~-~~-----~~n~l~ia~r~~IKLFyRP 143 (228)
T PRK15188 104 DRE--SVFYLNSKAIPSVDKN-KL-----TGNSLQIATQSVIKLFIRP 143 (228)
T ss_pred Cce--EEEEEEEEecCCCCcc-cc-----ccceEEEEEeeeEEEEECC
Confidence 633 3344444444442110 00 0000022456788888873
No 35
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=79.86 E-value=3.5 Score=37.52 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=34.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+.+.+|....+..|++|.+.|+.++.+|++||..||+..
T Consensus 213 ~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 213 RKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888999999999999999999999999999764
No 36
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=79.28 E-value=9.3 Score=36.53 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=42.0
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcE----------------------EEeCCCeeeCCCCe
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPRST 65 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y----------------------~VrP~~GiI~P~~s 65 (244)
+.++-..-.|.-| ++...-.++++|+++++|-..==+|+.-+| .|.|+.. |.||++
T Consensus 249 V~~~v~~A~Y~vp-gR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~p-I~PGET 326 (381)
T PF04744_consen 249 VKVKVTDATYRVP-GRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSP-IAPGET 326 (381)
T ss_dssp EEEEEEEEEEESS-SSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S--B-TT-E
T ss_pred eEEEEeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCC-cCCCce
Confidence 4444445566655 788899999999999999877444433332 4566655 899999
Q ss_pred EEEEEEecc
Q 026049 66 CDVIVTMQS 74 (244)
Q Consensus 66 ~~V~Itlq~ 74 (244)
.++.|+.|.
T Consensus 327 rtl~V~a~d 335 (381)
T PF04744_consen 327 RTLTVEAQD 335 (381)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEeeh
Confidence 999999974
No 37
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.91 E-value=36 Score=30.26 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=73.9
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeec-------CCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 80 (244)
+.|.+..+.|+.. .-...++|.|.++.++.-.+..- ....|-|-|+.-.|+||+...|.|...+. ..|.
T Consensus 29 v~i~~TRiI~~~~---~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi~~~~~-~lP~ 104 (235)
T COG3121 29 VVLGGTRIIYPAG---DKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRILYTGN-KLPA 104 (235)
T ss_pred EEecceEEEEeCC---CceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEEEecCC-CCCC
Confidence 5667777888875 34689999998889998886554 23459999999999999999999999986 4677
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeCC
Q 026049 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p 129 (244)
| ...-|-+.--.+|+... +.... .. -.....+++++-|.++
T Consensus 105 d--rEslf~lnv~eIPp~~~--~~~~~--n~--lq~a~r~riKlf~RP~ 145 (235)
T COG3121 105 D--RESLFRLNVDEIPPKSK--DDKGP--NV--LQLALRSRIKLFYRPA 145 (235)
T ss_pred C--ceeEEEEEeeecCCCCc--ccCCc--ce--EEEEeeeeeeEEECcc
Confidence 6 33455555555554321 00000 00 0224567778777744
No 38
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.32 E-value=1.8 Score=31.87 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=17.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+++++...+.+..+.+...+.+|.++|++|++|-
T Consensus 29 ELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 29 ELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555566665553
No 39
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.91 E-value=4.9 Score=39.53 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
...+...-++..++.++.|...+.+||++|++|.++||+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888999999999999999999998875
No 40
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=77.64 E-value=35 Score=30.55 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=56.4
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEEeeec--C--C-CcEEEeCCCeeeCCCCeEEEEEEecc--CCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N--P-KKYCVRPNTGVVLPRSTCDVIVTMQS--QKEA 78 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFKVKTT--~--P-~~Y~VrP~~GiI~P~~s~~V~Itlq~--~~e~ 78 (244)
-+.+++..+.|+.. .....++|.|.+++ ++.=..... . + .-|.|-|+.--|+||+...|.|.... ...+
T Consensus 17 ~v~l~~TRvIy~~~---~~~~sv~v~N~~~~~p~LvQsWv~d~~~~~~~pFivtPPlfrl~p~~~~~lRI~~~~~~~~~l 93 (239)
T PRK15254 17 AVNVDRTRIIMDAP---QKTVAITLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKL 93 (239)
T ss_pred eEEECceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEEecCCCCCcCCEEEcCCeEEECCCCceEEEEEEcccCCCCC
Confidence 36677778888863 35689999999763 543332221 1 1 24999999999999999999998763 2345
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 026049 79 PPDMQCKDKFLLQGVVASP 97 (244)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~ 97 (244)
|.|.. .=|-+....+|+
T Consensus 94 P~DRE--Slf~lnv~~IP~ 110 (239)
T PRK15254 94 PQDRE--TLFWFNVRGVPP 110 (239)
T ss_pred CCCce--EEEEEEEEEcCC
Confidence 66533 334444444443
No 41
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=77.45 E-value=4.4 Score=29.29 Aligned_cols=56 Identities=13% Similarity=0.282 Sum_probs=33.0
Q ss_pred CCeeEEEEEEEcCCCCeE-EEEeeecCCCcEE--EeCCC-eeeCCCCeEEEEEEeccCCC
Q 026049 22 RKQISCSLQLSNKTDNYV-AFKVKTTNPKKYC--VRPNT-GVVLPRSTCDVIVTMQSQKE 77 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~--VrP~~-GiI~P~~s~~V~Itlq~~~e 77 (244)
+....-.++++|.++.++ ..++.-..|..+. +.|.. +-|.||++..+.+++.+...
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 345677899999987553 3455445688887 55544 36999999999999987644
No 42
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=77.29 E-value=30 Score=30.64 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=54.9
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCC--eEEEEeeecC----CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDN--YVAFKVKTTN----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~--~VAFKVKTT~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 80 (244)
-+.+++..+.|.... ....++|.|.+++ +++..--.+. ...|.|-|+.--|+||+...|.|..... ..|.
T Consensus 26 gi~i~~TRvIy~~~~---~~~si~l~N~~~~~~~LvQsWv~~~~~~~~~pfivtPPlfrl~p~~~q~lRIi~~~~-~LP~ 101 (229)
T PRK15195 26 GIALGATRVIYPADA---KQTSLAIRNSHTNERYLVNSWIENSSGVKEKSFIVTPPLFVSEPKSENTLRIIYAGP-PLAA 101 (229)
T ss_pred eEEECCeEEEEeCCC---ceEEEEEEeCCCCccEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 367788888888642 3489999999864 3433211111 1259999999999999999999998753 3565
Q ss_pred CCCCCceEEEEEEE
Q 026049 81 DMQCKDKFLLQGVV 94 (244)
Q Consensus 81 d~~~kDKFlVqs~~ 94 (244)
|...--.|.|..++
T Consensus 102 DrESlf~Lnv~eIP 115 (229)
T PRK15195 102 DRESLFWMNVKAIP 115 (229)
T ss_pred CeeEEEEEEeeecC
Confidence 53333333344443
No 43
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=76.81 E-value=17 Score=27.22 Aligned_cols=54 Identities=17% Similarity=0.359 Sum_probs=40.4
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEeeecCCCcEEEe--CCCe-eeCCCCeEEEEEEeccC
Q 026049 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKKYCVR--PNTG-VVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VA-FKVKTT~P~~Y~Vr--P~~G-iI~P~~s~~V~Itlq~~ 75 (244)
.....-.+...|.+..++. |.+.-..|+-+.++ |..| .|.||+.+.-.+.+...
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l~~~s~~~l~p~~~i~q~~~i~~~ 74 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQLQPPSSPTLPPGGQITQVLKVENP 74 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEEcCCCCCccCCCCCEEEEEEEECC
Confidence 3466788999999998874 88888888877655 5544 78999887777766553
No 44
>PRK14127 cell division protein GpsB; Provisional
Probab=76.19 E-value=8.2 Score=30.68 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
+++.......|.+|...|.++|..|+++|..++.+...++
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4566667777888888888888888888888877655443
No 45
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.13 E-value=5.9 Score=31.28 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+-+...++...+..|.||-..|+-||..||+.|..+.
T Consensus 20 l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 20 LLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455778999999999999999999999999998774
No 46
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=75.09 E-value=7.3 Score=37.22 Aligned_cols=54 Identities=15% Similarity=0.280 Sum_probs=39.1
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeecC------C-CcEEEeCCCee--------------eCCCCeEEEEEEeccC
Q 026049 22 RKQISCSLQLSNKTDNYVAFKVKTTN------P-KKYCVRPNTGV--------------VLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VAFKVKTT~------P-~~Y~VrP~~Gi--------------I~P~~s~~V~Itlq~~ 75 (244)
++..+-++++||.++.+|-.+==+|+ | ..|...|++.- |.||++.+|.|..|.-
T Consensus 281 GR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~aqdA 355 (399)
T TIGR03079 281 GRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKMEAKDA 355 (399)
T ss_pred CcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEEEehh
Confidence 67788899999999999987744443 3 33333333322 7899999999998854
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=74.32 E-value=5.3 Score=30.01 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.++.|...|+..|.-|.-|...+.++|..|.+|...+
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899999989988888888887765543
No 48
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.81 E-value=6.7 Score=31.21 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=31.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
-..+.++.+.+..|.||-..|+-||+.||+.|..+
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999999986
No 49
>smart00338 BRLZ basic region leucin zipper.
Probab=73.68 E-value=11 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.++...+..|+.|...|..++..|++|+..|+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554
No 50
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=73.52 E-value=6.7 Score=35.22 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhcCCCCCchhHHhhhhheeeccccccc
Q 026049 179 STEARALISKLTEEKNSVIQINN---KLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTD 240 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~---~Lqqel~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 240 (244)
+.++.++..+|++|...+..++. .|++|..+||+++. ++.....-...+-++.+.|..+.+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~-~~~~~~~~~i~A~Vi~~~~~~~~~ 134 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLN-LKESLDYQFITARVISRSPDPWSQ 134 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccCCCceEEEEEEEeCCCCcee
Confidence 45666666677777666666655 56777778776532 211111123444555555554443
No 51
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.11 E-value=11 Score=27.58 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++....++...-..|.++...|.++|++||++-....
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777788889999999999999877554
No 52
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=72.68 E-value=11 Score=25.65 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
...+..|..+...|.++|..|++++..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566667777777777777777777665
No 53
>smart00338 BRLZ basic region leucin zipper.
Probab=72.59 E-value=10 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+++..|+.+...|..+|..|+.++..|+...
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888888888888887654
No 54
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.34 E-value=9.3 Score=27.93 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.+......+.+++.+.+.+.++|.+|+.|...|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456777888899999999999999999988875
No 55
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=72.05 E-value=9 Score=27.12 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
+|.+....-.+|..|..+|.+||..||.-
T Consensus 27 rY~~vL~~R~~l~~e~~~L~~qN~eLr~l 55 (60)
T PF14775_consen 27 RYNKVLLDRAALIQEKESLEQQNEELRSL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555543
No 56
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=71.50 E-value=73 Score=28.22 Aligned_cols=108 Identities=14% Similarity=0.215 Sum_probs=65.1
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCC----------CcEEEeCCCeeeCCCCeEEEEEEeccCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP----------KKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P----------~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e 77 (244)
+.++-..+.|+.. ....+++|.|.++.+..=....... ..|-|-|+.-.|+|++...+.|..... .
T Consensus 20 i~l~~TRvIy~~~---~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~ 95 (226)
T PRK15218 20 IYIYGTRIIYPAQ---KKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLAN-N 95 (226)
T ss_pred EEeCceEEEEcCC---CcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-C
Confidence 3444446777753 3457899999998763322222111 149999999999999999999998653 4
Q ss_pred CCCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccC-CCcceEEEeEEEEeC
Q 026049 78 APPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEA-GHHVEECKLRVLYVA 128 (244)
Q Consensus 78 ~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~-~~~i~e~KLrv~f~~ 128 (244)
+|.|. --=|-+-...+|+..+. . ++.. =......++|+-|.+
T Consensus 96 LP~DR--ESlfwlnv~~IPp~~~~---~----~~~n~L~iairtrIKLfYRP 138 (226)
T PRK15218 96 LPGDR--ESLFYLNVLDIPPNSDE---N----KDKNIIKFALQNRIKLIYRP 138 (226)
T ss_pred CCcce--eEEEEEEEEEcCCCCCC---c----CcCcEEEEEeeeEEEEEEcc
Confidence 67662 23455555555542110 0 0000 022456788888873
No 57
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=70.77 E-value=13 Score=26.45 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
+..+-+...|..|.+..+.|..||..||+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555544444444444443
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.09 E-value=6.2 Score=34.64 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=23.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+++++.+..+.++.|.+|...|.+|+..+|+|++.|+
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777776666666554
No 59
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.48 E-value=8.7 Score=28.32 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+.|...+...|.-|.-|...|.+.|+.|++|..
T Consensus 10 E~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 445566666666666666666666665555544
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.42 E-value=18 Score=25.35 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..++...+..|+.|...|..++..|++++..|+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666666666666553
No 61
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=67.85 E-value=20 Score=26.61 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=31.4
Q ss_pred eEEEEEEEcCCCCeEEEEeee-----cCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 026049 25 ISCSLQLSNKTDNYVAFKVKT-----TNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKT-----T~P~~Y~VrP~~GiI~P~~s~~V~Itl 72 (244)
..-.|+|.|.+...+.|.|.. ..|..|. |.||++..+.+-+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~~~~-------v~ag~~~~~~w~l 65 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGGGGPWTYT-------VAAGQTVSLTWPL 65 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCCCCCEEEE-------ECCCCEEEEEEee
Confidence 367899999999999999987 3345555 4558888877766
No 62
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=67.20 E-value=94 Score=27.81 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=54.3
Q ss_pred EEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeee----cC---CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (244)
Q Consensus 9 ~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 81 (244)
.++-..+.|+.. ....+++|.|.++.+ |-|++ .. ..-|.|-|+.--|+|++...|.|..... .+|.|
T Consensus 31 ~l~~TRvIy~~~---~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRlep~~~~~lRI~~~~~-~LP~D 104 (237)
T PRK15224 31 KLGATRVIYHAG---TAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD 104 (237)
T ss_pred EeCceEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCCc
Confidence 333345777752 346789999998876 55554 11 1249999999999999999999998743 56766
Q ss_pred CCCCceEEEEEEEcCC
Q 026049 82 MQCKDKFLLQGVVASP 97 (244)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (244)
.. -=|-+....+|+
T Consensus 105 RE--SlFwlnv~~IPp 118 (237)
T PRK15224 105 RE--TLQWVCIKAVPP 118 (237)
T ss_pred ee--EEEEEEEEEcCC
Confidence 32 334444444554
No 63
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=66.70 E-value=23 Score=26.98 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=39.5
Q ss_pred cCCCeeEEEEEEEcCCCCe--------EEEEeeecCCC--cEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 20 ELRKQISCSLQLSNKTDNY--------VAFKVKTTNPK--KYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 20 ~~~~~~~~~L~L~N~s~~~--------VAFKVKTT~P~--~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
..++.....++++|+++.+ .|+-|-=|--. ....+-..+-|.||++..+.+.+.+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPS 77 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HH
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEce
Confidence 3577889999999999977 55555443222 24677888999999999999999775
No 64
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=65.41 E-value=93 Score=28.07 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=51.2
Q ss_pred CeeeeeccCCCeeEEEEEEEcCCCCeEEEEeee----cC---CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCC
Q 026049 13 QELQFPFELRKQISCSLQLSNKTDNYVAFKVKT----TN---PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCK 85 (244)
Q Consensus 13 ~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKT----T~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~k 85 (244)
..+.|+.. ....+++|.|.++.+ |-|++ .. ..-|-|-|+.--|+|++...|.|..... ..|.|...
T Consensus 47 TRvIy~~~---~~~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~pFiVtPPLfRLep~~~~~lRIi~~~~-~LP~DRES- 119 (246)
T PRK15233 47 TRVIYKED---APSTSFWIMNEKEYP--ILVQTQVYNDDKSSKAPFIVTPPILKVESNARTRLKVIPTSN-LFNKNEES- 119 (246)
T ss_pred eEEEEeCC---CcEEEEEEEcCCCCc--EEEEEEEecCCCCccCCEEECCCeEEECCCCceEEEEEECCC-CCCcCceE-
Confidence 35565543 246899999987776 44443 11 1249999999999999999999998753 46665322
Q ss_pred ceEEEEEEEcCC
Q 026049 86 DKFLLQGVVASP 97 (244)
Q Consensus 86 DKFlVqs~~v~~ 97 (244)
=|-+....+|+
T Consensus 120 -lfwlnv~~IPp 130 (246)
T PRK15233 120 -LYWLCVKGVPP 130 (246)
T ss_pred -EEEEEEEEcCC
Confidence 24444444554
No 65
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=65.26 E-value=15 Score=27.69 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..+...+.+++.|...+..||.+|+-|...|.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667789999999999999999999988875
No 66
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=63.70 E-value=14 Score=27.57 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
|..|++|...|.++.++|..||..+++-
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888888888888877754
No 67
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.66 E-value=12 Score=27.02 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=26.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..+.+.+...+..|..|-..|+++...++.|-.+|+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ 41 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLL 41 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777766665
No 68
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=63.52 E-value=26 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.++.-|++.+..|.+.|..|++|...||..
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566777777777788888887777743
No 69
>PRK15274 putative periplasmic fimbrial chaperone protein SteC; Provisional
Probab=62.87 E-value=1.2e+02 Score=27.50 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=52.8
Q ss_pred EeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEEeeec--C----CCcEEEeCCCeeeCCCCeEEEEEEecc-CCCCCCC
Q 026049 10 IEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N----PKKYCVRPNTGVVLPRSTCDVIVTMQS-QKEAPPD 81 (244)
Q Consensus 10 I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFKVKTT--~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~-~~e~p~d 81 (244)
++-..+.|+.. ....+++|.|.++. ++.=..... . ..-|.|-|+.--|+|++...|.|...+ ...+|.|
T Consensus 30 l~~TRvIy~e~---~~~~sv~v~N~~~~~p~LVQsWvdd~~~~~~~~pFivtPPLfRlep~~~q~lRI~~~~~~~~LP~D 106 (257)
T PRK15274 30 PDRTRVIFNGN---ENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQD 106 (257)
T ss_pred eCceEEEEeCC---CceEEEEEEeCCCCCcEEEEEEccCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCc
Confidence 33346777753 34689999999865 433222111 1 124999999999999999999999875 2346665
Q ss_pred CCCCceEEEEEEEcCC
Q 026049 82 MQCKDKFLLQGVVASP 97 (244)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (244)
.. -=|-+....+|+
T Consensus 107 RE--SlFwlNv~eIPp 120 (257)
T PRK15274 107 RE--SLFYFNVREIPP 120 (257)
T ss_pred ee--EEEEEEEEEcCC
Confidence 22 334444444554
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=62.47 E-value=22 Score=24.85 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++..|+.+...|..+|..|+.++..|+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888888888877654
No 71
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=61.04 E-value=23 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
....++...+..|..|...|.+++..|++|
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345678889999999999999999999876
No 72
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=60.55 E-value=25 Score=25.59 Aligned_cols=17 Identities=29% Similarity=0.124 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 026049 197 IQINNKLQQELVRTYLC 213 (244)
Q Consensus 197 ~~en~~Lqqel~~l~~~ 213 (244)
..++.+|+.|++.|++.
T Consensus 46 ~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 46 YEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455566666665543
No 73
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=59.92 E-value=15 Score=28.77 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=19.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
+.+..++.+.+.+|..+...|.+|...||.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 444556666666666666666666666665
No 74
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=59.80 E-value=20 Score=32.83 Aligned_cols=37 Identities=19% Similarity=0.041 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhhcCCCCCchhHHhhhhheeeccccccc
Q 026049 203 LQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTD 240 (244)
Q Consensus 203 Lqqel~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 240 (244)
|++|..+||+.+ +++.........+-++.+.|..+.+
T Consensus 96 l~~EN~rLr~LL-~~~~~~~~~~i~A~Vi~r~~~~~~~ 132 (283)
T TIGR00219 96 LKQENVRLRELL-NSPLSSDEYKISAEVIYLNYDNYST 132 (283)
T ss_pred HHHHHHHHHHHh-cCcccccCCceEEEEEEeCCCcccc
Confidence 667777777643 3321111112445566666655543
No 75
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=59.80 E-value=16 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
.+.-.++..|..+...+.++|..|++++..|...+..|+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 477778888889999999999999999888887766654
No 76
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=59.34 E-value=1.3e+02 Score=26.88 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=54.0
Q ss_pred EEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C----CcEEEeCCCeeeCCCCeEEEEEEeccCCCC
Q 026049 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQKEA 78 (244)
Q Consensus 9 ~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~ 78 (244)
.++-..+.|+.. ....+++|.|.++.+..=...... | .-|-|-|+.-.|+|++...|.|...+. .+
T Consensus 36 ~l~~TRvIy~~~---~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~~-~L 111 (242)
T PRK15253 36 VIYGTRVIYPAE---KKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPN-SL 111 (242)
T ss_pred EeCceEEEEeCC---CceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECCC-CC
Confidence 334346777753 346789999999876433322211 1 249999999999999999999987653 46
Q ss_pred CCCCCCCceEEEEEEEcCC
Q 026049 79 PPDMQCKDKFLLQGVVASP 97 (244)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~ 97 (244)
|.|. --=|-+-...+|+
T Consensus 112 P~DR--ESlfwlnv~~IPp 128 (242)
T PRK15253 112 PDNK--ESLFYLNVLDIPP 128 (242)
T ss_pred Ccce--eEEEEEEEEEcCC
Confidence 7652 2334455555554
No 77
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.22 E-value=16 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=19.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
++..|+.+.+.-.+|..|...|+.|...|+..|
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566666666666666666666655543
No 78
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.51 E-value=44 Score=30.34 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINN 201 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~ 201 (244)
.+.|+...|..|+||-..|.-||+
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444433
No 79
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.39 E-value=19 Score=24.92 Aligned_cols=22 Identities=23% Similarity=0.158 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026049 190 TEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 190 ~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++...+..||..|+.+|.+++
T Consensus 28 ~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 28 RKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556667777888887765
No 80
>PRK14127 cell division protein GpsB; Provisional
Probab=57.28 E-value=18 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
.|.-+.+..+.++...+.+||..|++|+.+|+..+..++
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666665544433
No 81
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=56.86 E-value=29 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+...=..|..|...|.+||..++.|++.++
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444555444
No 82
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.63 E-value=17 Score=25.84 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+..+.-|++.+..|..+|.+|+.|...||..
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35577889999999999999999999999965
No 83
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=56.40 E-value=9.9 Score=26.65 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=27.2
Q ss_pred EEEEcCCCCeEEEE-eeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 026049 29 LQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 29 L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 72 (244)
|++.|+|..+|.|- ++....++=..-...+.|.|+++..+.+.-
T Consensus 1 L~v~NpTPy~vtl~~~~~~~~~~~~~~~~~~mi~P~s~~~~~~~~ 45 (68)
T PF02753_consen 1 LTVKNPTPYYVTLSSLKLNGGGKKKKIDNSGMIAPFSSKSFPLPA 45 (68)
T ss_dssp EEEEE-SSS-EEEEEEEETHHHCCEECCCETEE-TTEEEEEETST
T ss_pred CEEECCCCcEEEEEeeeecccccccccCCceEECCCCceEEeccC
Confidence 68999999999886 444433332233444499999998876653
No 84
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=56.21 E-value=46 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=34.9
Q ss_pred CCeeEEEEEEEcCCCCeEE-EEeeecCCCcE--EEeCC-CeeeCCCCeEEEEEEecc
Q 026049 22 RKQISCSLQLSNKTDNYVA-FKVKTTNPKKY--CVRPN-TGVVLPRSTCDVIVTMQS 74 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VA-FKVKTT~P~~Y--~VrP~-~GiI~P~~s~~V~Itlq~ 74 (244)
.....-.++..|.+..++- |.+.-..|+.| .+.|. ...|.|+..++-.+.+..
T Consensus 23 ~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~l~~~s~~~i~p~~~i~Q~~~v~~ 79 (115)
T PF02883_consen 23 PNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQLQPPSSSTIPPGQQITQVIKVEN 79 (115)
T ss_dssp TTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEEEEESS-SSB-TTTEEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCcceEEEEEEeccccEEEEeCCCCCeeCCCCeEEEEEEEEE
Confidence 5667789999999998775 77766666655 55566 458999888776555544
No 85
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.91 E-value=18 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
-++..+..++.++.+++++|++.||
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566677777777888888877765
No 86
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.10 E-value=18 Score=34.29 Aligned_cols=11 Identities=0% Similarity=0.102 Sum_probs=5.6
Q ss_pred ceEEEeEEEEe
Q 026049 117 VEECKLRVLYV 127 (244)
Q Consensus 117 i~e~KLrv~f~ 127 (244)
|+.+.++|.+.
T Consensus 6 ~~~~~~~~~~~ 16 (420)
T PF07407_consen 6 IQMKNMKCTLK 16 (420)
T ss_pred eecccceeEEE
Confidence 34445556554
No 87
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=52.85 E-value=29 Score=27.57 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
...+|++....|.+||.-||-+++.|.+-.
T Consensus 73 e~~rlkkk~~~LeEENNlLklKievLLDML 102 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEVLLDML 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888988888888887643
No 88
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=52.83 E-value=31 Score=28.40 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
.=..|+.++..|.+|..+|++|+.++++-.--|+
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777775543333
No 89
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=52.66 E-value=66 Score=24.44 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCeeEEEEEEEcCCCCeEE-----EEeeecCCCcEEEeC---------CCeeeCCCCeEEEEEEeccC
Q 026049 22 RKQISCSLQLSNKTDNYVA-----FKVKTTNPKKYCVRP---------NTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VA-----FKVKTT~P~~Y~VrP---------~~GiI~P~~s~~V~Itlq~~ 75 (244)
++-+.-.++++|.++.++. |++.+..-..|.... ..+-|.||++++-.|...-.
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp 102 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVP 102 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEES
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEEC
Confidence 4456779999999998776 778877667776443 35789999999998888643
No 90
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.61 E-value=20 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=26.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++++.+..+.+.|....+|-..|.+||+-||+=...|-
T Consensus 26 ~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 26 LELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777777777665553
No 91
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.81 E-value=38 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
...|..|..+.+.+.+||.+|+.+|+.-|
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777776655
No 92
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=50.25 E-value=41 Score=25.95 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
-....+..|.+..+.+..+|.+|.+++..+|+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567788999999999999999999988875
No 93
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.25 E-value=17 Score=27.63 Aligned_cols=35 Identities=17% Similarity=0.038 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSP 223 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~~~ 223 (244)
.|++|.+.+........+||..||+ .-+-+++.|.
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~Lrk-ENrK~~~ls~ 74 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRK-ENRKSMLLSV 74 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH-hhhhhHHHHH
Confidence 4557788888888888888888876 3333444443
No 94
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.08 E-value=23 Score=35.58 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+.++.++.-+...+..|++|...|.+||.+|+.+|.++|++
T Consensus 151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455666667788889999999999999999999998864
No 95
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.94 E-value=28 Score=27.41 Aligned_cols=32 Identities=6% Similarity=-0.131 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYLCHSSF 217 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~ 217 (244)
+..+.+|...|.+++.+|+.|.+-|++...=|
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567777788888888888888887765333
No 96
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.48 E-value=41 Score=28.00 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=7.6
Q ss_pred cchHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKN 194 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~ 194 (244)
+.+.++...++.|+.|.+
T Consensus 86 ~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 97
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=49.32 E-value=28 Score=29.12 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 026049 196 VIQINNKLQQELVRTY 211 (244)
Q Consensus 196 ~~~en~~Lqqel~~l~ 211 (244)
++++..+|.+||+.+.
T Consensus 71 l~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLN 86 (161)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 98
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.92 E-value=31 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+.+..|+.+.+.++..+...|++|..+||.....|+
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLY 127 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRADNVKLY 127 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555554
No 99
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=48.41 E-value=96 Score=30.28 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=37.9
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEEEe-C-CCeeeCCCCeEEEEEEeccC
Q 026049 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-P-NTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~Vr-P-~~GiI~P~~s~~V~Itlq~~ 75 (244)
..-.++|.|.+.++..|.++........+. + +.=.|+||+..++.|++...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEec
Confidence 457999999999988888877654443333 2 23478999999988887654
No 100
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.42 E-value=40 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
.=+..-+..|++|-..|.+|.+.||-
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999888773
No 101
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=47.05 E-value=66 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
..+.+....+..|+..+++.|..-++.++.|
T Consensus 24 ~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 24 RLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666777777777766666665554
No 102
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=46.69 E-value=48 Score=25.53 Aligned_cols=30 Identities=30% Similarity=0.223 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
.++.+.+-.|-+++..|++|+..|++.|.+
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888988888888888888886544
No 103
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.62 E-value=51 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+...-.+|.+|...|.++|+.|+.|+..|..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666777777777777776654
No 104
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=46.19 E-value=40 Score=30.43 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++...|..|+.|...|+.+++.++.+|+.++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46677778888888888888887777777765
No 105
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=45.06 E-value=69 Score=22.56 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.....=.++-.+|.++.+|+..|+++...||...
T Consensus 23 ~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr~lL 56 (60)
T PF14775_consen 23 NFLKRYNKVLLDRAALIQEKESLEQQNEELRSLL 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666789999999999999999998764
No 106
>PRK15285 putative fimbrial chaperone protein StfD; Provisional
Probab=44.70 E-value=2.4e+02 Score=25.43 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=51.6
Q ss_pred EeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEE--eeecCCC----cEEEeCCCeeeCCCCeEEEEEEecc-CCCCCCC
Q 026049 10 IEPQELQFPFELRKQISCSLQLSNKTDN-YVAFK--VKTTNPK----KYCVRPNTGVVLPRSTCDVIVTMQS-QKEAPPD 81 (244)
Q Consensus 10 I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFK--VKTT~P~----~Y~VrP~~GiI~P~~s~~V~Itlq~-~~e~p~d 81 (244)
++-..+.|+.. .....++|.|.++. ++.=. |.....+ -|-|-|+.-.|+||+...|.|...+ ...+|.|
T Consensus 29 l~~TRVIy~~~---~~~~sv~i~N~~~~~p~LvQsWvd~~~~~~~~~pFiVtPPlfRl~p~~~~~lRI~~~~~~~~LP~D 105 (250)
T PRK15285 29 PDRTRLVFRGE---DKSISVDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASLPQD 105 (250)
T ss_pred eCccEEEEcCC---CceEEEEEEeCCCCCcEEEEEEeeCCCCCcccCCEEEcCCeEEECCCCceEEEEEECCCCCCCCCC
Confidence 33346777753 34689999999865 43222 2211211 3999999999999999999999775 2345665
Q ss_pred CCCCceEEEEEEEcCC
Q 026049 82 MQCKDKFLLQGVVASP 97 (244)
Q Consensus 82 ~~~kDKFlVqs~~v~~ 97 (244)
.. -=|-+-...+|+
T Consensus 106 RE--Slfwlnv~~IPp 119 (250)
T PRK15285 106 RE--TLFYYNVREIPP 119 (250)
T ss_pred ce--EEEEEEEEEcCC
Confidence 22 234444444444
No 107
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=44.61 E-value=31 Score=32.11 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=23.6
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 172 ~~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
+.+.++||.+++-.-..|-.|+..+.-|...|+.+|+-
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee 123 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEE 123 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Confidence 44566677777666666666666666666655555443
No 108
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=44.02 E-value=57 Score=28.50 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+....+.....|+..|++.|++||.+...||..
T Consensus 44 ~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdL 77 (195)
T PF10226_consen 44 KEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDL 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666778888899999999998888853
No 109
>PF15058 Speriolin_N: Speriolin N terminus
Probab=43.89 E-value=30 Score=30.27 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
.+|.-+..+|++|..|-..|.++.+-||+..
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3465667777777777666666666665543
No 110
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=43.00 E-value=1.3e+02 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=14.2
Q ss_pred eEEEEEEEcCCCCeEEEEeee
Q 026049 25 ISCSLQLSNKTDNYVAFKVKT 45 (244)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKT 45 (244)
+.-.|+|+|+++++|-+..-|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 456788888888888887754
No 111
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.51 E-value=22 Score=31.56 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+...+..+...+..|-+.|.+++++||.++
T Consensus 180 ~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555444
No 112
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.33 E-value=34 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 185 LISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
.|.+|++|+..+++..++=+++|.
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~Lq 25 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQ 25 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666555554444443
No 113
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=42.11 E-value=30 Score=29.32 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.3
Q ss_pred EEeeecCCCcEEEeCCCee--eCCCCeEEEEEEecc
Q 026049 41 FKVKTTNPKKYCVRPNTGV--VLPRSTCDVIVTMQS 74 (244)
Q Consensus 41 FKVKTT~P~~Y~VrP~~Gi--I~P~~s~~V~Itlq~ 74 (244)
|+|.-=+-..|++.|.-|+ |.||++..|.+.-..
T Consensus 69 f~i~hinGDl~kl~Pt~~F~gl~~Ges~~I~~~~~~ 104 (164)
T PF03173_consen 69 FKITHINGDLHKLTPTAGFKGLAPGESLEIPFVGEY 104 (164)
T ss_dssp EEEEE-STTEEEEEE-TT---B-TTEEEEEEEEEES
T ss_pred eEEEEEcCeEEEEeECCCCCccCCCCEEEEEEEccc
Confidence 6676667778999999998 899999999998654
No 114
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=40.38 E-value=40 Score=31.18 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+......|++|++.+++|++.++.++....
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555443
No 115
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=40.36 E-value=71 Score=24.26 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=34.3
Q ss_pred eeEEEEEEEcCCCCeE-EEEeeecCC-----------------CcEEEeCCC--eeeCCCCeEEEEEEeccC
Q 026049 24 QISCSLQLSNKTDNYV-AFKVKTTNP-----------------KKYCVRPNT--GVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 24 ~~~~~L~L~N~s~~~V-AFKVKTT~P-----------------~~Y~VrP~~--GiI~P~~s~~V~Itlq~~ 75 (244)
.....++|+|.++.++ .++|.=+-| ..|.|+|.. |.|.||+++.+-+.....
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~~~Wna~~s~~g~~~~v~~~~wn~~i~~G~s~~~Gf~~~~~ 85 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTITSSWNATVSQSGNTVTVTNPSWNGTIAPGGSVTFGFQASGS 85 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEEEEESCEEEEETTEEEEEESSTCSEEEESEEEEEEEEEEES
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEeeeeccEEEecCCEEEEEcCCcCcccCCCCeEEEEEEEeCC
Confidence 3456788888887765 244332222 468888754 799999998877666543
No 116
>smart00637 CBD_II CBD_II domain.
Probab=40.36 E-value=1.5e+02 Score=21.83 Aligned_cols=47 Identities=9% Similarity=0.203 Sum_probs=29.9
Q ss_pred EEEEEEEcCCCCeE-----EEEeee-------------cCCCcEEEeCCC--eeeCCCCeEEEEEEe
Q 026049 26 SCSLQLSNKTDNYV-----AFKVKT-------------TNPKKYCVRPNT--GVVLPRSTCDVIVTM 72 (244)
Q Consensus 26 ~~~L~L~N~s~~~V-----AFKVKT-------------T~P~~Y~VrP~~--GiI~P~~s~~V~Itl 72 (244)
...++|+|.++.++ .|.+.- .....|.++|.. +.|.||+++.+-+..
T Consensus 9 ~~~v~vtN~~~~~~~~W~v~~~~~~~~~i~~~Wn~~~~~~g~~~~~~~~~wn~~i~~G~s~~~gf~~ 75 (92)
T smart00637 9 TANVTVTNTGSSAINGWTVTFDLPGGQTVTNSWNATVSQSGGHVTATNASWNGTIAPGGSVSFGFQG 75 (92)
T ss_pred EEEEEEEeCCCCcccCeEEEEEcCCCcEEeeeEEEEEEecCCEEEEecCccccccCCCCEEEEEEEe
Confidence 46788888766443 333311 023368888644 799999988876665
No 117
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=40.15 E-value=47 Score=30.17 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+-.++++.|...|.+||++||-|-++||.+
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777754
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.97 E-value=42 Score=30.27 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+++..+.++...+..+.+|+..|+++|..|+-|++.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~ 168 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV 168 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666667777776666665555444
No 119
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=39.84 E-value=56 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
.....+.+.+..|.+|-..|+=||.+||+.|..
T Consensus 22 ~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 22 AELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 345678889999999999999999999999876
No 120
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.82 E-value=84 Score=24.77 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
...+.+.+..+.++...+.+.++++.+++..||+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666554
No 121
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.78 E-value=1.7e+02 Score=21.98 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=32.2
Q ss_pred EEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEec
Q 026049 9 NIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQ 73 (244)
Q Consensus 9 ~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq 73 (244)
.++|+++..+. + ....++++|.++..-.|-+..- .+ ...|.||++..+.++-.
T Consensus 31 ~f~P~~i~v~~--G--~~v~l~~~N~~~~~h~~~i~~~-----~~---~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 31 GFSPSTITVKA--G--QPVTLTFTNNDSRPHEFVIPDL-----GI---SKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEES-EEEEET--T--CEEEEEEEE-SSS-EEEEEGGG-----TE---EEEE-TT-EEEEEEEE-
T ss_pred eEecCEEEEcC--C--CeEEEEEEECCCCcEEEEECCC-----ce---EEEECCCCEEEEEEcCC
Confidence 56777766554 2 2346899999888888877651 11 15789999999998543
No 122
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=38.66 E-value=28 Score=31.23 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=23.2
Q ss_pred CCCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 026049 174 EPQDKSTEARALISKLTEEKN---SVIQINNKLQQELVR 209 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~---~~~~en~~Lqqel~~ 209 (244)
++++...++.+++..|+.+.. .+.+||++||+.|..
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444555666666666666666 667777777775543
No 123
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=38.19 E-value=97 Score=33.06 Aligned_cols=23 Identities=26% Similarity=0.681 Sum_probs=16.0
Q ss_pred hhhhcccCCCcceEEEeEEEEeCCCCC
Q 026049 106 PEMFNKEAGHHVEECKLRVLYVAPPRP 132 (244)
Q Consensus 106 ~~~f~k~~~~~i~e~KLrv~f~~p~~~ 132 (244)
+++|.. +.+.+++=+|+|+ |++|
T Consensus 262 Pnf~~~---sdl~~~~~pvv~i-~~Ep 284 (980)
T KOG0980|consen 262 PNFLRQ---SDLESYITPVVYI-PSEP 284 (980)
T ss_pred cccccc---cchhhcCCCceec-CCCC
Confidence 467664 3478888899999 4443
No 124
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.13 E-value=30 Score=31.66 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKN----SVIQINNKLQQELVR 209 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~----~~~~en~~Lqqel~~ 209 (244)
-.++++++.+|.++.. .+.+||++||+.|..
T Consensus 75 N~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 75 NYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555444433332 388899999986554
No 125
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=38.09 E-value=84 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
-.|+..++.++++|+..|+|-...-.....-||+.
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45788888899999888888766555555555544
No 126
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=37.93 E-value=98 Score=22.69 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..|..|+..+.++..+.++|+..++
T Consensus 5 v~~l~~EkeeL~~klk~~qeel~~~k 30 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544444
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.75 E-value=56 Score=32.32 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
+++..+.+|..|-+.+++||++||+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444
No 128
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=37.54 E-value=47 Score=30.50 Aligned_cols=35 Identities=9% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
..+.+|.++.+.|..+|..+|+++...|..+.|.|
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36788888888999999999999998888888887
No 129
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.20 E-value=78 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..+...+..+..|...|.+++..|.+|...|+
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~ 84 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLK 84 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666666666666666666665
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.77 E-value=43 Score=29.35 Aligned_cols=34 Identities=9% Similarity=-0.078 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..++.+.-.+|.+|...+..++..|+.+++.+++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555553
No 131
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=36.58 E-value=46 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+-+...|..|+.+...|+.||..||.+..
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34556778888888888888888887653
No 132
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.83 E-value=53 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
...|..|.+..-.--++..+|+.++..|+..+
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555443
No 133
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.40 E-value=1.8e+02 Score=26.21 Aligned_cols=38 Identities=5% Similarity=0.026 Sum_probs=28.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.....++.+.+..|++|...+..+..+++.+.+.+|+.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR 103 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKR 103 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888888888888888888888888755
No 134
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=35.22 E-value=1.2e+02 Score=22.87 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=34.4
Q ss_pred cceEEeCCeeeeeccCCCeeEEEEEEEcCCC--CeEEEEeeecCCCcEEEeC----CCeeeCCCCeEEEEEEe
Q 026049 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTD--NYVAFKVKTTNPKKYCVRP----NTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 6 ~lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~--~~VAFKVKTT~P~~Y~VrP----~~GiI~P~~s~~V~Itl 72 (244)
.-+..+|++|.+..- ..++++|.+. +.+.|.=.......-...+ +.+.+.||++.++.++-
T Consensus 10 g~~~F~P~~i~v~~G------~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 10 GALVFEPAKISIAAG------DTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred CceeEeCCEEEECCC------CEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 446888988887653 2367788743 5555532211111100111 34578899998886663
No 135
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.53 E-value=1e+02 Score=23.31 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
..++.+.+..|+.++..+..+...++.++..
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555554443
No 136
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.50 E-value=50 Score=33.50 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
...+++.+.+.+|.++++++.++.++|+++++.|+.
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~ 128 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIERLEP 128 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677788888888999999998888888888774
No 137
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=51 Score=33.66 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
+....+.+|++|.+.|..++..|+.+++.|+....+|+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777777777777777777777777776655543
No 138
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=34.38 E-value=58 Score=32.84 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
-.++...|+.-.++|.+||++||.|...||+++.
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3457888999999999999999999999999864
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.18 E-value=92 Score=28.92 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
-.++.+.+.+|+.|+..+.+|...|+.|...|.
T Consensus 59 e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 59 EEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665554
No 140
>PF14645 Chibby: Chibby family
Probab=33.85 E-value=80 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
....|.++..+|.+||..||-+.+.|-+
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888887777776654
No 141
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.83 E-value=98 Score=21.79 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.+....++...+.++++|...|.++.+.|+...+.+.
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3455667788888888888888888888844444443
No 142
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=33.58 E-value=2.3e+02 Score=23.60 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=34.0
Q ss_pred CeeEEEEEEEcCCCCeE-EEEeeecC-CCcEE--EeCCCeeeCCCCeEEEEEEe
Q 026049 23 KQISCSLQLSNKTDNYV-AFKVKTTN-PKKYC--VRPNTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 23 ~~~~~~L~L~N~s~~~V-AFKVKTT~-P~~Y~--VrP~~GiI~P~~s~~V~Itl 72 (244)
+-+.-.|+++|.++..+ --+|.... +..-+ --|..+.|.||+++++.+-.
T Consensus 85 ~mvsIql~ftN~s~~~i~~I~i~~k~l~~g~~i~~F~~I~~L~pg~s~t~~lgI 138 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDEPIKNIHIGEKKLPAGMRIHEFPEIESLEPGASVTVSLGI 138 (145)
T ss_pred CcEEEEEEEEecCCCeecceEECCCCCCCCcEeeccCcccccCCCCeEEEEEEE
Confidence 34556899999999766 23444333 22334 44889999999998877654
No 143
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.58 E-value=1.4e+02 Score=22.71 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
...++.+.+..+.++...+..+...+.+++..+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666555543
No 144
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=33.56 E-value=47 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKL 203 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~L 203 (244)
-+...|.+|.+||+.++++..+|
T Consensus 47 AA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 47 AACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhc
Confidence 44556677777777776666554
No 145
>PRK10722 hypothetical protein; Provisional
Probab=33.53 E-value=96 Score=28.13 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026049 190 TEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 190 ~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..+.+.++||+..||.+|+.+.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~ 196 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTT 196 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777666554
No 146
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.47 E-value=74 Score=28.72 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
.++++......+.+..|+.|.+.|+..|.+|-+..-
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566666666666666666666666665543
No 147
>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.
Probab=33.31 E-value=75 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+..+--|||.|..+.-.|++||..+|.
T Consensus 5 Lr~VL~ERNeLK~~v~~leEEL~~yk~ 31 (60)
T PF11461_consen 5 LREVLQERNELKARVFLLEEELAYYKS 31 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556899999999999999998874
No 148
>PRK14163 heat shock protein GrpE; Provisional
Probab=32.55 E-value=2.9e+02 Score=24.49 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++.+.+..|.++...+.....+++.|.+.+|+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR 76 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRR 76 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677888888888888888888888888755
No 149
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=32.41 E-value=20 Score=30.53 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026049 191 EEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 191 ~E~~~~~~en~~Lqqel~~l~ 211 (244)
.|+..|+.++|+||.|+--||
T Consensus 24 dEKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554444443
No 150
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=32.28 E-value=86 Score=27.56 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.|..+.+|...|.+||..|++-.+++
T Consensus 133 ~ie~~~eEi~~lk~en~~L~elae~~ 158 (200)
T PF07412_consen 133 EIEQKDEEIAKLKEENEELKELAEHV 158 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444433
No 151
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.09 E-value=2.4e+02 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCeeEEEEEEEcCCCCeEEEEeeecC
Q 026049 22 RKQISCSLQLSNKTDNYVAFKVKTTN 47 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~VAFKVKTT~ 47 (244)
++.....++|+|.++. -||.|+=+.
T Consensus 37 g~~v~V~~~iyN~G~~-~A~dV~l~D 61 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSS-AAYDVKLTD 61 (181)
T ss_pred CcEEEEEEEEEECCCC-eEEEEEEEC
Confidence 6778899999999776 799999887
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.98 E-value=1.2e+02 Score=22.05 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 026049 191 EEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 191 ~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.|...|..|+..|++||..+|.
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4445777777777777666553
No 153
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.80 E-value=1.7e+02 Score=20.61 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
+++...|..|..+.+.++.+.+..|+|-.|
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ak~EAaR 42 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQAAKEEAAR 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 154
>PHA00006 D external scaffolding protein
Probab=31.65 E-value=20 Score=29.05 Aligned_cols=30 Identities=10% Similarity=0.307 Sum_probs=25.8
Q ss_pred hcCCCCCchhHHhhhhhe--eeccccccceec
Q 026049 214 HSSFKRPFSPEVCMMSLW--FRNQLSYTDICI 243 (244)
Q Consensus 214 ~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~ 243 (244)
..||+...++.=|+.++| |.||..-.--|.
T Consensus 64 fvgyprfpapvefiaaviayyvhpvniqtacl 95 (151)
T PHA00006 64 FVGYPRFPAPVEFIAAVIAYYVHPVNIQTACL 95 (151)
T ss_pred cccCCCCCChHHHHHHHHHHhccccchhhhhh
Confidence 479999899999999999 999988777774
No 155
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=31.51 E-value=40 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 195 SVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 195 ~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
.|.+|..+||+|+..|+++...|-
T Consensus 75 ~LLd~i~~Lr~el~~L~~~l~~~~ 98 (101)
T PRK10265 75 TLLDEIAHLKQENRLLRQRLSRFV 98 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999998776664
No 156
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=31.49 E-value=66 Score=23.80 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
.++.+.|..|-++...|++|++.||+
T Consensus 59 ~~gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 59 LEGIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 36777888887777777777776653
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=31.35 E-value=84 Score=30.15 Aligned_cols=34 Identities=12% Similarity=0.036 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
....+...+..|+++.+.+++|.++++.|+..|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666677777777777776665
No 158
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=31.32 E-value=1e+02 Score=22.84 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026049 185 LISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel 207 (244)
.+..|.++...+.+|+..||+.|
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 66 RILELEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555555555544
No 159
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=31.24 E-value=3.9e+02 Score=23.92 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=60.2
Q ss_pred cceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeee---cCC---------------CcEEEeCCCeeeCCCCeEE
Q 026049 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKT---TNP---------------KKYCVRPNTGVVLPRSTCD 67 (244)
Q Consensus 6 ~lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKT---T~P---------------~~Y~VrP~~GiI~P~~s~~ 67 (244)
--|.|.|-.+.+... .+....++|+|.++.+..++|.. ++| ..-.+-|..-.|.||++..
T Consensus 16 a~l~V~Pi~~~i~a~--~~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~ 93 (234)
T PRK15308 16 ANMLVYPMAAEIGAG--REEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRT 93 (234)
T ss_pred ceEEEEEeEEEecCC--CcceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEE
Confidence 447788877766542 24568999999999888777643 332 1367889999999999999
Q ss_pred EEEEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026049 68 VIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (244)
Q Consensus 68 V~Itlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (244)
|.+..... + + .-.-|.|...++++.
T Consensus 94 IRli~lg~---~-~--kE~~YRl~~~pvp~~ 118 (234)
T PRK15308 94 VRVISLQA---P-E--REEAWRVYFEPVAEL 118 (234)
T ss_pred EEEEEcCC---C-C--cEEEEEEEEEecCCc
Confidence 99886652 1 2 335577777777653
No 160
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.54 E-value=45 Score=30.33 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPF 221 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~ 221 (244)
.....+...-...|.+||+.|+.+++.|++...-++-+|
T Consensus 214 k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 214 KQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566889999999999999999988887666
No 161
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.45 E-value=1.1e+02 Score=28.30 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026049 189 LTEEKN 194 (244)
Q Consensus 189 L~~E~~ 194 (244)
|++|..
T Consensus 55 le~Ee~ 60 (314)
T PF04111_consen 55 LEQEEE 60 (314)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 162
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.27 E-value=1.1e+02 Score=24.59 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026049 183 RALISKLTEEKNSVIQINNK 202 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~ 202 (244)
...+..|+.+|+.+.+|.-+
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 163
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=30.19 E-value=17 Score=32.48 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+-..+..++...+..|..|-..|++||++|+.|-.+|
T Consensus 126 EQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 126 EQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777778888888888888888887777
No 164
>PRK00295 hypothetical protein; Provisional
Probab=30.12 E-value=91 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..|..|.+..-.--++...|+.++..|++
T Consensus 19 ~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 19 DTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555543
No 165
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=29.84 E-value=1.2e+02 Score=26.04 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=24.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+...+++.+.-.-|.+....+...|+.|+.+|..|.
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777777777777765
No 166
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.82 E-value=94 Score=26.17 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 026049 180 TEARALISKL-TEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 180 ~e~~~~i~~L-~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+++...+..+ ..+.+.++.++.+||.|++.|+.
T Consensus 61 ~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 61 AELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 23445666777777777776663
No 167
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.71 E-value=70 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYLCHSSF 217 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~ 217 (244)
..++.+|...+.+|..+.+.|++.||+|..|+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666777777765553
No 168
>PHA03155 hypothetical protein; Provisional
Probab=29.67 E-value=80 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026049 188 KLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~ 208 (244)
.|.+|...|.=||..|++.|.
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666666553
No 169
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.37 E-value=42 Score=31.83 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..|++|-.+|++||.+|+.|+++|.
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666653
No 170
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.14 E-value=1e+02 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
-+...|..|.+....+.++|..|++++
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666654
No 171
>PRK04406 hypothetical protein; Provisional
Probab=29.12 E-value=94 Score=22.86 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+..=....|..|.+..-.-.++...|+.+|.+|+++
T Consensus 19 ~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 19 QLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555566666666666544
No 172
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=29.07 E-value=1.2e+02 Score=25.15 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.|..|.++...+.++.+.|..+|..+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l 78 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTL 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 173
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=28.90 E-value=1.4e+02 Score=21.95 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.++.|..|=+++.-|+=.||+.|...|+
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rq 36 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQ 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555655555555555555555543
No 174
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.81 E-value=1.6e+02 Score=22.49 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhh
Q 026049 180 TEARALISKLTEE------KNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 180 ~e~~~~i~~L~~E------~~~~~~en~~Lqqel~~l~~~~ 214 (244)
..+...|.-|.+. .....-||..|++|+.+|+...
T Consensus 27 ~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555542 2344567888999998888653
No 175
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.74 E-value=89 Score=23.86 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
.+...+.+|.+|...+..|...-+.|.
T Consensus 27 ka~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555554444444333333
No 176
>PF14802 TMEM192: TMEM192 family
Probab=28.70 E-value=1e+02 Score=27.67 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.+.+.+++..+-+..|+++|.+|++++..|
T Consensus 206 ~~eellEkQadlI~yLk~hn~~L~~ril~l 235 (236)
T PF14802_consen 206 SLEELLEKQADLIRYLKEHNARLSRRILAL 235 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567788888999999999999998765
No 177
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=28.44 E-value=1.4e+02 Score=25.63 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hcCCC
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYLC----------HSSFK 218 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~----------~~~~~ 218 (244)
....+..|.+++..+.....+++.+|+.|++. ++||.
T Consensus 129 ~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekEe~kkitSedih~GFd 175 (177)
T PF03234_consen 129 GKAELEELQEHRAKLEKEQKELKKKLEELEKEEKKKITSEDIHTGFD 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCC
Confidence 66788899999999999999999999999743 67875
No 178
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.40 E-value=53 Score=27.99 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026049 185 LISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+-..|.+|-..|+.|...|||||
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777
No 179
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.28 E-value=1.2e+02 Score=21.27 Aligned_cols=36 Identities=11% Similarity=0.252 Sum_probs=27.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
+++.+...+...|..++.|...++.+.+++.+-...
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778899999999999998888875433
No 180
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.26 E-value=96 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+++.++..++..|-+.+++|-++|
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHH
Confidence 333333344444444444444433
No 181
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.19 E-value=64 Score=29.97 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYLCHSS 216 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~ 216 (244)
+...|..|+++-..|+.+...|-.|+..||+.+.+
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555443
No 182
>PRK09039 hypothetical protein; Validated
Probab=28.15 E-value=73 Score=29.93 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+.+..+.|+...|..|..|..+|++|...|+.+|...
T Consensus 127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777766666666665544
No 183
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=28.10 E-value=82 Score=29.33 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.+.+|.+|+..|..|.++|+++|+..+
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999998765
No 184
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=27.97 E-value=1.3e+02 Score=27.02 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=29.1
Q ss_pred EEEEEcCCCCeEEEE-eeecCCCcEEEeCCCeeeCCCCeEEEEE
Q 026049 28 SLQLSNKTDNYVAFK-VKTTNPKKYCVRPNTGVVLPRSTCDVIV 70 (244)
Q Consensus 28 ~L~L~N~s~~~VAFK-VKTT~P~~Y~VrP~~GiI~P~~s~~V~I 70 (244)
.|+++|+|..++.|. ++....+ -.+....|.|.|+++..+.+
T Consensus 177 ~l~v~Nptpyyitl~~l~~~~~~-~~~~~~~~mv~P~s~~~~~l 219 (253)
T PRK15249 177 GIVIVNPQPWFASLSNLNVKVNG-ASYNLDADMIAPFSSQTWWL 219 (253)
T ss_pred EEEEECCCceEEEeeeeeeccCC-eecCCCCceECCCCccEEEc
Confidence 599999999999876 3322222 12223458899999998875
No 185
>PRK00736 hypothetical protein; Provisional
Probab=27.72 E-value=1.1e+02 Score=22.07 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
....|..|.+..-.--++...|+.+|..|+.
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445544444444445555555555543
No 186
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=27.64 E-value=2.2e+02 Score=20.33 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=33.6
Q ss_pred CCeeEEEEEEEcCCCCe-EEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 22 RKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~-VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
++...-.++++|.+... =.|+|+-...+...-.-..+-|.||++..+.++..+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 56678899999997743 4566654333333333333778899999998888764
No 187
>PRK02119 hypothetical protein; Provisional
Probab=27.61 E-value=93 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..|..|.+..-.-.++...|+.+|.+|+.
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555543
No 188
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=27.44 E-value=1.1e+02 Score=24.43 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+.+...+...+.+|.++...+.++.+++++.+..+..
T Consensus 100 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 100 DKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666543
No 189
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.39 E-value=96 Score=22.55 Aligned_cols=31 Identities=16% Similarity=-0.038 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...|..|.+....-.++...|+.+|.+|+.+
T Consensus 21 e~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 21 EITIEELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555444444455555555555555443
No 190
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.38 E-value=1.8e+02 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
++.+.+.+|++|...+......++.+.+..|+.
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR 54 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKR 54 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777777777777654
No 191
>PRK14157 heat shock protein GrpE; Provisional
Probab=27.31 E-value=3e+02 Score=24.70 Aligned_cols=34 Identities=6% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.++...+..|++|...+..+..+++-|.+.+|+.
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR 113 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNR 113 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888888888888888855
No 192
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.29 E-value=55 Score=35.10 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhh
Q 026049 176 QDKSTEARALISKLTEEKN---------------SVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~---------------~~~~en~~Lqqel~~l~~~ 213 (244)
+++.+|+...+.-|.+|.. .+.+||.+||+-|.+||+.
T Consensus 338 kEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDl 390 (1243)
T KOG0971|consen 338 KERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDL 390 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555655554 6788888888888888865
No 193
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.18 E-value=87 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKL 203 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~L 203 (244)
..++.+.|+.|+.|...||.|..++
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999998875
No 194
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.97 E-value=87 Score=27.96 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhcCCCCCchh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNK-------LQQELVRTYLCHSSFKRPFSP 223 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~-------Lqqel~~l~~~~~~~~~~~~~ 223 (244)
....+...|..++.|++...+...+ |+.+.+.+|+-..|...|..+
T Consensus 61 DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l 113 (230)
T PF10146_consen 61 DINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSL 113 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 3344555555556665554444444 444444444444777766533
No 195
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=26.89 E-value=1.2e+02 Score=28.77 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=9.2
Q ss_pred hhhhheeecccccccee
Q 026049 226 CMMSLWFRNQLSYTDIC 242 (244)
Q Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (244)
..+-+|.+.|..+..-+
T Consensus 105 i~ArVI~r~ps~~~~~l 121 (337)
T PRK14872 105 IMGRVIFRDPAHWGSSC 121 (337)
T ss_pred EEEEEEEeCCCccceEE
Confidence 34556666665554443
No 196
>PF14645 Chibby: Chibby family
Probab=26.84 E-value=76 Score=25.31 Aligned_cols=22 Identities=27% Similarity=0.135 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026049 182 ARALISKLTEEKNSVIQINNKL 203 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~L 203 (244)
+......|+||-+.|+=+++-|
T Consensus 76 l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 197
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=26.69 E-value=1.3e+02 Score=26.56 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
|.-+.+--+..+...+.++|++|++++..|+..+.+|.
T Consensus 27 EVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 27 EVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666777777777777777777776665554
No 198
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.67 E-value=1.3e+02 Score=26.44 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.++.+.+.+|++|...+..+..+++.|.+.+|+.
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR 49 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRR 49 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777777777777754
No 199
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=26.67 E-value=83 Score=27.66 Aligned_cols=35 Identities=23% Similarity=-0.006 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+.++.+.-.+|-+++..+..|+..|++|+..|+-.
T Consensus 120 L~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 120 LEEALEENEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777777654
No 200
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.58 E-value=1e+02 Score=27.10 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=36.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhh-----hcCCCCCchhHHhhhhhe
Q 026049 176 QDKSTEARALISKLTEEKNSVIQI-----NNKLQQELVRTYLC-----HSSFKRPFSPEVCMMSLW 231 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~e-----n~~Lqqel~~l~~~-----~~~~~~~~~~~v~~~~~~ 231 (244)
.++..+.......+++|..+|.++ .++||++-....+- -.-|+|+....|.++-+|
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfkPM~~~~v~tI~~F 136 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFKPMLYISVLTIPFF 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 556677777778888888888775 34666654444432 256778876666665554
No 201
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.49 E-value=1.8e+02 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...++.+.+..|+++...+..+..+++.+.+.+|+.
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR 75 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNR 75 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777777777777754
No 202
>PRK04325 hypothetical protein; Provisional
Probab=26.46 E-value=1.1e+02 Score=22.31 Aligned_cols=38 Identities=21% Similarity=0.088 Sum_probs=20.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+.+..-....|..|.+..-.-.++...|+.+|..|+.+
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555556666666666443
No 203
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.39 E-value=1.2e+02 Score=25.70 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.....+++.+|++|......+.+.||.+.+.|-
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777677777776666553
No 204
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.34 E-value=1.1e+02 Score=23.50 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+....+...+.+|+++...+.++...++.+|..+
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666666666666666665544
No 205
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.28 E-value=1.2e+02 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=24.2
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKL-TEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L-~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+.++.++..+ .-|-..++.||++|+-||+++|.
T Consensus 103 f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks 137 (220)
T KOG3156|consen 103 FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKS 137 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 45667889999999999999983
No 206
>PLN02678 seryl-tRNA synthetase
Probab=26.17 E-value=1.5e+02 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+...++.+.+..|.+|...+.++...+++++..+-
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557777788888888888888888888877654
No 207
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.10 E-value=56 Score=31.08 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
++.+.+|.++...++.++.|.+.+.+++++.|++++.
T Consensus 283 s~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 283 SEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777777888888888888888777777765
No 208
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=26.02 E-value=2.2e+02 Score=21.64 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
++.++.+.+.+..+++.++..+.++|+..+-.|
T Consensus 2 ~Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 2 TLEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888877766
No 209
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=25.93 E-value=80 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..++.+.+..+..|.+.+.+|..++|+++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777777888877776
No 210
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=25.84 E-value=34 Score=29.14 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+...+..|+.++..+..+..+|++|...||+.+
T Consensus 12 ~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el 45 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRAQVRRLCQENDWLRGEL 45 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888888888888888888888888654
No 211
>PF10846 DUF2722: Protein of unknown function (DUF2722); InterPro: IPR021216 This eukaryotic family of proteins has no known function.
Probab=25.75 E-value=1.1e+02 Score=29.69 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhh-hcCCCCCchhHHh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQ---QELVRTYLC-HSSFKRPFSPEVC 226 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lq---qel~~l~~~-~~~~~~~~~~~v~ 226 (244)
..++.....+|+-|...-+||.-+|. .+|+.||-. .+|-++-..++||
T Consensus 57 se~al~eai~LK~EQEKTKQEyyRLE~~~~~lelLr~Al~~gIPp~lIP~LF 108 (416)
T PF10846_consen 57 SEEALIEAIKLKQEQEKTKQEYYRLEQRNKELELLRTALQAGIPPNLIPLLF 108 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcceee
Confidence 34677777889999999999976654 488899855 5999977766676
No 212
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=25.65 E-value=64 Score=32.20 Aligned_cols=39 Identities=21% Similarity=0.091 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSS 216 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~ 216 (244)
..+.+.+...+|.+-.+.+++|..+|++||++|..-..+
T Consensus 9 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~ 47 (512)
T TIGR03689 9 TNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPST 47 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345566777888888888888888899888888644333
No 213
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=25.56 E-value=1.6e+02 Score=23.44 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=23.2
Q ss_pred eeccCCCeeEEEEEEEcCCCCeEEEEeee
Q 026049 17 FPFELRKQISCSLQLSNKTDNYVAFKVKT 45 (244)
Q Consensus 17 F~~~~~~~~~~~L~L~N~s~~~VAFKVKT 45 (244)
+....+....-.++|+|.+++.+-|+|.-
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~~ 49 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVSA 49 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEEE
Confidence 33455677778999999999999999864
No 214
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.47 E-value=2.4e+02 Score=19.77 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
.+++...|+.|....++|.++...||.+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444444444444443
No 215
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=25.21 E-value=1.5e+02 Score=27.13 Aligned_cols=50 Identities=8% Similarity=-0.029 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHhhhhheeecccccccee
Q 026049 193 KNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLWFRNQLSYTDIC 242 (244)
Q Consensus 193 ~~~~~~en~~Lqqel~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 242 (244)
......+.+.|++|..+||....=-......-..+.=+|++.|..+.+-|
T Consensus 85 ~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~~~~~~~~~~i 134 (284)
T COG1792 85 LEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVISRSPDPWSQTI 134 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEEecCCchhcEE
Confidence 33444445555556556554421110110011233345566666555444
No 216
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.12 E-value=2.3e+02 Score=20.59 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
..+.+.+..++++...+......+..++..|+....
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555566666666666666666666666665543
No 217
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.02 E-value=1.4e+02 Score=27.62 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+..|+++.+.+++||++|++|++.+...
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~ 61 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQ 61 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554443
No 218
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.01 E-value=1.8e+02 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+.++.+.+.+|.+|...+.....+++.+.+.+|+.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677788888888888888888888887754
No 219
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=24.98 E-value=97 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..+++..+.+.+..|..+.+.|-+..+.+|+.|..|=
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lt 178 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLT 178 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667888889998888888888888888887764
No 220
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.83 E-value=1.7e+02 Score=21.88 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..+.+..++..|+...-...+.|.+|+.++..++.
T Consensus 20 EI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 20 EIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677888888888888888889888887765
No 221
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=24.76 E-value=99 Score=24.75 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
..-++..|..|.+..+.|.+||.-||.
T Consensus 69 Ve~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 69 VEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666553
No 222
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=24.72 E-value=2e+02 Score=23.06 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKN---SVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~---~~~~en~~Lqqel~~l~ 211 (244)
+++.+.|.+|+++.+ ...++...|+.++..|.
T Consensus 47 ~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 47 DELREEIVKLMEENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443 22334444555555554
No 223
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.69 E-value=1.9e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
...+.+.+.++++|.+.|..|...|..
T Consensus 33 ~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 33 LQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445555555666666666665555544
No 224
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=24.53 E-value=96 Score=31.38 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=32.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+....+....|+.|++++..+...++.+..||.+.+..
T Consensus 369 e~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 369 EGQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566788899999999999999999999999999865
No 225
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.53 E-value=1.9e+02 Score=22.66 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++.+.+.+|.+|...|..||.-|++.+.-.+
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667889999999999999999999887665
No 226
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.32 E-value=1.4e+02 Score=26.46 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCeEEEE--eeecCCCcEEEeCCCeeeCCCCeEEEEEE
Q 026049 27 CSLQLSNKTDNYVAFK--VKTTNPKKYCVRPNTGVVLPRSTCDVIVT 71 (244)
Q Consensus 27 ~~L~L~N~s~~~VAFK--VKTT~P~~Y~VrP~~GiI~P~~s~~V~It 71 (244)
..|+++|+|..+|.|- .-+. .++-.. -+.+.|.|+++..+.+.
T Consensus 165 ~~l~v~Nptpy~vtl~~~~l~~-~~~~~~-~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 165 NLLTVKNPTPYYVTLANLTLNV-GGRKLG-LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred CEEEEECCCCcEEEEEEEEEee-CceecC-CCcceECCCccceeecC
Confidence 6899999999999998 3333 333333 78899999998886554
No 227
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.21 E-value=39 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
=++.+...+..|..|...|.+++..|+.+|..++..
T Consensus 26 fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 26 FLDELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 356777888888899999999988888888877644
No 228
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.09 E-value=2e+02 Score=24.87 Aligned_cols=35 Identities=6% Similarity=-0.048 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...+.+.+..|++|...+..+..+++.|.+.+|+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR 68 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRR 68 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677788888888888888888888887754
No 229
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=24.01 E-value=2e+02 Score=25.21 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
-.|+++++.+++||+..|+|=...=+.-+.-|+|
T Consensus 46 keelr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 46 KEELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488888888888888888765544444444443
No 230
>PRK14158 heat shock protein GrpE; Provisional
Probab=24.01 E-value=1.8e+02 Score=25.38 Aligned_cols=35 Identities=9% Similarity=-0.055 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++.+.+.+|++|...+..+..+++.+.+.+|+.
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR 76 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKR 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777788888877754
No 231
>PRK14151 heat shock protein GrpE; Provisional
Probab=23.78 E-value=1.9e+02 Score=24.67 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
++.+.+..|++|...+..+..+++.|.+.+|+.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777777777777777777754
No 232
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=23.70 E-value=83 Score=24.82 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=21.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+++..++++.+.+....||--.|+-||+-|-|=.+.|
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 4455555666666666666666666666665555554
No 233
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.61 E-value=1.4e+02 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026049 187 SKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+.|.+|...|.=||..|++.+.
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~ 27 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLR 27 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556666666653
No 234
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.50 E-value=1.5e+02 Score=27.25 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hcCCCCCc
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC---HSSFKRPF 221 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~---~~~~~~~~ 221 (244)
......+.+..|..+...|-...++-++||++.++. +-..||.|
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAf 223 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAF 223 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 445556677788888888888888889999988765 35666666
No 235
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=23.43 E-value=2.1e+02 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
|-.+-.+..+.|..+|..|.+|.+.|+..+
T Consensus 43 Ye~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 43 YEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777788888888888888887654
No 236
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=23.39 E-value=27 Score=28.15 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHhhhhhe
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMMSLW 231 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~~~~v~~~~~~ 231 (244)
+..+..+...+..+..+...++......++.++..+..+..|..+-..+++++++|
T Consensus 118 ~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~vli~~~~~ 173 (183)
T PF01105_consen 118 EESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIVVLILVSVW 173 (183)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555566666666666666666665555555555
No 237
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.36 E-value=2.7e+02 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCC
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLCH-SSFK 218 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~-~~~~ 218 (244)
.++.+....|..|+..+..+..+||..+..|-+.. .+++
T Consensus 150 ~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~~~~ 189 (192)
T PF11180_consen 150 QQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANEPIP 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35566777888888888888888888888776654 4443
No 238
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.24 E-value=1.9e+02 Score=21.81 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..+.+|++++..+.++...++.++..++..
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777766666544
No 239
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.15 E-value=85 Score=31.13 Aligned_cols=12 Identities=25% Similarity=-0.014 Sum_probs=5.2
Q ss_pred HHHHHHHHhhhh
Q 026049 202 KLQQELVRTYLC 213 (244)
Q Consensus 202 ~Lqqel~~l~~~ 213 (244)
+|+.|+..|+.+
T Consensus 108 eLEaE~~~Lk~Q 119 (475)
T PRK13729 108 KLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 240
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.14 E-value=98 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+...+..|+++...+.+++++|++++..+..
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666655543
No 241
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.12 E-value=1.5e+02 Score=26.65 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+.+.|..+++|...++.-+|.|+.|+.++|.
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~ke 121 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSKE 121 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445555555666666666666666665553
No 242
>smart00605 CW CW domain.
Probab=23.02 E-value=1e+02 Score=22.96 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=14.4
Q ss_pred EEEEEEcC-CCCeEEEEeeecCCC
Q 026049 27 CSLQLSNK-TDNYVAFKVKTTNPK 49 (244)
Q Consensus 27 ~~L~L~N~-s~~~VAFKVKTT~P~ 49 (244)
..++-.+. ++..||||+.++.+.
T Consensus 57 ~~v~~~~~~~~~~VAfK~~~~~~~ 80 (94)
T smart00605 57 LTVKKLSSSSGKKVAFKVSTDQPS 80 (94)
T ss_pred EEEEEccCCCCcEEEEEEeCCCCC
Confidence 34444444 458899999866443
No 243
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=22.94 E-value=62 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.481 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026049 192 EKNSVIQINNKLQQELVR 209 (244)
Q Consensus 192 E~~~~~~en~~Lqqel~~ 209 (244)
++..+.+|++.||+||.+
T Consensus 3 ~~~~l~~ei~~L~~el~~ 20 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELER 20 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 355666667777777665
No 244
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=22.89 E-value=92 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+..|...++.+|+++++|+.+||+..
T Consensus 135 s~~~E~~~~r~~~~~~~~e~~~lr~~~ 161 (295)
T TIGR02268 135 SYQQEVVELRARNQLLEEENARLRRQQ 161 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 344556677888888888888888764
No 245
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.85 E-value=2e+02 Score=25.34 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++.+.+..|+++...+......++.+.+.+|+.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR 88 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR 88 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777777754
No 246
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=22.85 E-value=1.1e+02 Score=31.23 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
...++..|.+|+.|+..|.+|-..+..+|..++.++.
T Consensus 513 I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls 549 (604)
T KOG3863|consen 513 ILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLS 549 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999998888888888888876643
No 247
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.82 E-value=1.3e+02 Score=28.59 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
...+..|.++...|.++|++|+++...++.
T Consensus 136 l~~~~~l~~~~~~L~~enerL~~e~~~~~~ 165 (342)
T PF06632_consen 136 LDANSRLQAENEHLQKENERLESEANKLLK 165 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554443
No 248
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=22.81 E-value=1.1e+02 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=0.0
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 170 VEQYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 170 ~~~~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++..+++..+.=+...-.-|..-...+..+|+.|..||.++|
T Consensus 1 E~~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 1 EDSAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 249
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.77 E-value=54 Score=30.72 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=24.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
++++.+|..+..-+++-+++.+....+.++++||++.
T Consensus 290 se~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 290 SELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666666777777777777777775
No 250
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.73 E-value=2.4e+02 Score=21.13 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
..++...+..|........+||.+|++|...|..-+
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666677778888888888777554
No 251
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.70 E-value=1.3e+02 Score=30.46 Aligned_cols=38 Identities=18% Similarity=0.020 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+.......++.|.+|...-..|++.||++...||.++
T Consensus 287 ~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 287 SKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888888888888999999999998764
No 252
>PF13205 Big_5: Bacterial Ig-like domain
Probab=22.52 E-value=3.1e+02 Score=19.97 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=35.8
Q ss_pred eeeeeccCCC-eeEEEEEEEc--CCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEe
Q 026049 14 ELQFPFELRK-QISCSLQLSN--KTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTM 72 (244)
Q Consensus 14 eL~F~~~~~~-~~~~~L~L~N--~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itl 72 (244)
.|.|..+.+. .....+.+.+ ....+|.+. ....+.+.+.|..+ +.+|.++.|.|.-
T Consensus 26 ~i~Fs~~v~~~s~~~~~~~~~~~~~~~~v~~~--~~~~~~~~i~p~~~-L~~~t~Y~v~i~~ 84 (107)
T PF13205_consen 26 VITFSEPVDPASVSSAITITDSNGSGVPVSFS--SWDGNTLTITPSQP-LKPGTTYTVTIDS 84 (107)
T ss_pred EEEECCceecCccceEEEEEecCCCcEEEEEE--EccCCEEEEEECCc-CCCCCEEEEEECC
Confidence 4667666543 3344556643 444555555 34458899999954 8889999998854
No 253
>PRK11239 hypothetical protein; Provisional
Probab=22.40 E-value=1.5e+02 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.033 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
..|+++...|.+|...||+++..|+.+.
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777777777777776543
No 254
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.10 E-value=1.6e+02 Score=27.41 Aligned_cols=38 Identities=29% Similarity=0.295 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
++...+..|.++...+..|...+++|+..+|..+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567888888888888888889999998888765555
No 255
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.99 E-value=1.2e+02 Score=25.87 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=15.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
+++..+.+....|..|..-..+-.+.-..||+.
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444555555555544444444444444444
No 256
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.98 E-value=1.5e+02 Score=27.13 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+....+..|...+.+||++|++.|..-
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 355666788899999999999987653
No 257
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=21.96 E-value=1.6e+02 Score=31.54 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+.+..++...+.+|.+|...+.+++++|+++|..++
T Consensus 753 ~~~~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~ 788 (900)
T PRK13902 753 GVPPEQLPKTVERFFEEWKEQKKEIEKLRKELAELL 788 (900)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568888899999999999999999999988665
No 258
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=21.95 E-value=84 Score=28.49 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 026049 196 VIQINNKLQQELVRTYLC 213 (244)
Q Consensus 196 ~~~en~~Lqqel~~l~~~ 213 (244)
+.+....|+.||.+||.|
T Consensus 120 AlqKIsALEdELs~LRaQ 137 (253)
T PF05308_consen 120 ALQKISALEDELSRLRAQ 137 (253)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445566666666644
No 259
>PF09640 DUF2027: Domain of unknown function (DUF2027); InterPro: IPR018598 This protein domain is of unknown function. though putatively involved in DNA mismatch repair. It is associated with IPR002625 from INTERPRO. ; PDB: 2HUH_A.
Probab=21.86 E-value=1.5e+02 Score=25.32 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=45.3
Q ss_pred EEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCCC
Q 026049 26 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGA 99 (244)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v~~~~ 99 (244)
.-..-|.|-|+.++.|-.-+...+.|.+| +.|.|+|+..+-|.-.-... + ..-.+..||.+.-..+.
T Consensus 19 ~fE~YlVNDSNYy~~y~y~~~~g~~w~lr-s~G~iEPNtKl~ieef~~~e--L----N~~~~v~vQ~iAyK~~K 85 (162)
T PF09640_consen 19 RFECYLVNDSNYYLHYTYLTAEGNSWTLR-SAGEIEPNTKLFIEEFSKEE--L----NDLERVAVQLIAYKKDK 85 (162)
T ss_dssp -EEEEEEE-SSSEEEEEEEEEETTEEEEE-EEEEE-TTEEEEEEEE-GGG--G----GG-SSEEEEEEEE-SSS
T ss_pred ceEEEEEecCccEEEEEEEeccCCeEEEE-ecceECCCceeehhhcCHHH--h----hccceeEEEEEEEcCCC
Confidence 45677899999999999998888899988 68999999888876443221 1 13356667766665443
No 260
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.82 E-value=2.2e+02 Score=19.99 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 026049 191 EEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 191 ~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.|+..|..+..+++.++..+.+
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555443
No 261
>PHA03162 hypothetical protein; Provisional
Probab=21.81 E-value=1.4e+02 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQ 198 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~ 198 (244)
+.|+.+.+.+|+-|-.+|.+
T Consensus 15 mEeLaaeL~kLqmENK~LKk 34 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKK 34 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444433
No 262
>PRK00846 hypothetical protein; Provisional
Probab=21.75 E-value=1.6e+02 Score=21.99 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..-....|..|.+......++..+|+.++.+|+..
T Consensus 22 lAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 22 LSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666666666677776666544
No 263
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.74 E-value=1.4e+02 Score=23.04 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
...+...+.+|+++...+.++...|+.++..
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555444443
No 264
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=21.54 E-value=1.3e+02 Score=26.29 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=19.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..|+-+...+..|+.|...|..+++.|+.++..++
T Consensus 112 ~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 112 KDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 34445555555555555555555555555555444
No 265
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=21.53 E-value=1.2e+02 Score=21.01 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=12.3
Q ss_pred eEEEEEEEcCCCCeEEEEe
Q 026049 25 ISCSLQLSNKTDNYVAFKV 43 (244)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKV 43 (244)
+...-++...+++.||||+
T Consensus 53 i~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 53 ISTVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEEeecCCCeEEEEEC
Confidence 3344445555668999996
No 266
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=21.53 E-value=2.3e+02 Score=21.11 Aligned_cols=29 Identities=24% Similarity=0.093 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
....+..|.+.+.++..+|++|..+|+--
T Consensus 36 ~~~~~~~~l~~l~~~~~~l~~e~~~L~lE 64 (97)
T PF04999_consen 36 QSRQLFYELQQLEKEIDQLQEENERLRLE 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666543
No 267
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.50 E-value=86 Score=32.11 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=24.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+++.|-+|+.+.|+++..-...+.++..+-|+||.+|+
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45556566666666666666666666666666777666
No 268
>PRK02119 hypothetical protein; Provisional
Probab=21.39 E-value=2.7e+02 Score=20.25 Aligned_cols=35 Identities=6% Similarity=-0.093 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.-.+++...+.+...+.+.+.++.+.|.+.|..+.
T Consensus 23 ~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 23 NLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34567888888888888899888888888776654
No 269
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.37 E-value=2.2e+02 Score=23.07 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
-+|+.+.|..|+.|++.+..-+..|...
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rr 54 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRR 54 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588889999999999665555544433
No 270
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=21.21 E-value=2.7e+02 Score=22.74 Aligned_cols=31 Identities=16% Similarity=-0.074 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 026049 191 EEKNSVIQINNKLQQELVRTYLCHSSFKRPF 221 (244)
Q Consensus 191 ~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~ 221 (244)
.+...+.+++..|+.||..||+-..--|||-
T Consensus 60 ~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLt 90 (126)
T PF07028_consen 60 SELKELKQELDVLSKELQALRKEYLERRPLT 90 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3367777778888888888886654444443
No 271
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=21.15 E-value=1.9e+02 Score=28.69 Aligned_cols=34 Identities=32% Similarity=0.384 Sum_probs=29.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+..+|..+.+.+|+.|...+.+.|++-+..|.+|
T Consensus 401 dddDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~l 434 (516)
T KOG4191|consen 401 DDDDEVLAELRKLQAELKAVSAHNRKKKHDLLRL 434 (516)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 4578999999999999999999999888877766
No 272
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.07 E-value=1.7e+02 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..++...+.++++|++..+++|+.|++.+...+
T Consensus 383 k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~ 416 (493)
T KOG0804|consen 383 KLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR 416 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4455556778888888888888888888777655
No 273
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=20.91 E-value=4e+02 Score=23.49 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.2
Q ss_pred eEEEEEE-EcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEecc
Q 026049 25 ISCSLQL-SNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (244)
Q Consensus 25 ~~~~L~L-~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~ 74 (244)
..+.++| .|.......|--....++.|. .++.-.+.+|.+..+.|....
T Consensus 61 ~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~-~~~~~~~~~G~~Y~L~V~~~~ 110 (298)
T PF14054_consen 61 SGATVTIYEDGQGNEYLFEESSNNDGVYY-SSNSFRGRPGRTYRLEVETPG 110 (298)
T ss_pred CCcEEEEEeCCCcceEeecccCCCcceEE-ecccccccCCCEEEEEEEECC
Confidence 4589999 777777777766554447888 444448999999999999853
No 274
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.60 E-value=1.6e+02 Score=22.79 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=21.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+++...+...|.+|++....+.++...+|++|..+
T Consensus 73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666665443
No 275
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=20.57 E-value=1.8e+02 Score=25.19 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 026049 181 EARALISKLTEEKNSVI---QINNKLQQELVRT 210 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~---~en~~Lqqel~~l 210 (244)
.+++.+..|+.+.+.++ ++|.++.+.+..+
T Consensus 51 ~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 51 RLRERNRQLEEQLEELIENARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 2355555444433
No 276
>KOG2829 consensus E2F-like protein [Transcription]
Probab=20.55 E-value=87 Score=29.25 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
..+.|++|++|+..+++..++=++.|.
T Consensus 130 ss~dv~~le~Er~k~~erI~kK~a~lq 156 (326)
T KOG2829|consen 130 SSQDVSELEEERKKRMERIKKKAAQLQ 156 (326)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999988775444333333
No 277
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.45 E-value=2.1e+02 Score=20.44 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
-..++...+.+...+.+.|.++.+.|.+.|..+..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677788888888888888888888888877763
No 278
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=20.42 E-value=2.1e+02 Score=28.40 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 026049 194 NSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 194 ~~~~~en~~Lqqel~~l~~~~ 214 (244)
..+.|+|.+++++++.||+.+
T Consensus 451 ~~~eqe~ek~~kqiekLK~kh 471 (488)
T PF06548_consen 451 MDAEQENEKAKKQIEKLKRKH 471 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999764
No 279
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=20.36 E-value=1.4e+02 Score=28.38 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=42.3
Q ss_pred CCCCCcc-eEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCC----------CcE-----EEeCCCe-eeCC
Q 026049 1 MMSTGEL-LNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNP----------KKY-----CVRPNTG-VVLP 62 (244)
Q Consensus 1 mm~~~~l-L~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P----------~~Y-----~VrP~~G-iI~P 62 (244)
||+.+.| |.+.=+ |+.|-++ .++.+++++|+|++.| =|||...- ..| ...-.-| -|.|
T Consensus 189 lmS~~~lhLevsLDkEiYyHGE---~isvnV~V~NNsnKtV-KkIK~~V~Q~adi~Lfs~aqy~~~VA~~E~~eGc~v~P 264 (402)
T KOG3865|consen 189 LMSDGPLHLEVSLDKEIYYHGE---PISVNVHVTNNSNKTV-KKIKISVRQVADICLFSTAQYKKPVAMEETDEGCPVAP 264 (402)
T ss_pred ccCCCceEEEEEecchheecCC---ceeEEEEEecCCccee-eeeEEEeEeeceEEEEecccccceeeeeecccCCccCC
Confidence 5666443 444444 7887765 5889999999988755 35554311 111 1112222 4678
Q ss_pred CCeEEEEEEeccC
Q 026049 63 RSTCDVIVTMQSQ 75 (244)
Q Consensus 63 ~~s~~V~Itlq~~ 75 (244)
|++..=..++-|.
T Consensus 265 gstl~Kvf~l~Pl 277 (402)
T KOG3865|consen 265 GSTLSKVFTLTPL 277 (402)
T ss_pred CCeeeeeEEechh
Confidence 8887777777654
No 280
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=20.26 E-value=94 Score=29.45 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026049 187 SKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel 207 (244)
..|.+|-..|++||.+|++++
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554443333
Done!