Query 026049
Match_columns 244
No_of_seqs 225 out of 704
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026049.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026049hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wic_A Hypothetical protein ri 100.0 3.1E-38 1E-42 261.6 12.9 135 4-143 15-152 (152)
2 2cri_A Vesicle-associated memb 100.0 5.9E-36 2E-40 246.3 18.7 128 1-132 8-136 (147)
3 1z9l_A Vesicle-associated memb 100.0 3E-35 1E-39 236.4 16.8 123 1-127 4-127 (128)
4 1msp_A MSP, major sperm protei 100.0 1.4E-32 4.9E-37 220.9 17.3 120 4-127 5-125 (126)
5 1row_A SSP-19, MSP-domain prot 100.0 2.1E-28 7.2E-33 192.4 14.1 104 8-125 3-106 (109)
6 1m1s_A WR4; structural genomic 100.0 1.5E-27 5.2E-32 189.3 16.0 107 5-125 8-114 (116)
7 2ys4_A Hydrocephalus-inducing 98.3 2.9E-06 9.8E-11 66.3 8.4 63 12-76 29-92 (122)
8 2e6j_A Hydin protein; PAPD, st 98.0 2.6E-05 8.9E-10 59.3 8.1 72 4-75 6-81 (112)
9 3qbt_B Inositol polyphosphate 97.9 5.9E-05 2E-09 60.8 10.1 69 6-74 25-100 (140)
10 3qis_A Inositol polyphosphate 97.5 0.00058 2E-08 62.9 10.2 70 6-75 28-104 (366)
11 2qsv_A Uncharacterized protein 96.3 0.017 5.8E-07 49.1 8.8 68 8-76 3-71 (220)
12 2qsv_A Uncharacterized protein 95.3 0.08 2.7E-06 44.9 8.9 68 6-75 118-186 (220)
13 3q48_A Chaperone CUPB2; IG fol 92.0 2.6 8.9E-05 36.8 12.7 107 8-128 30-146 (257)
14 1nkp_B MAX protein, MYC proto- 89.2 0.82 2.8E-05 32.9 5.8 36 179-214 42-77 (83)
15 2co7_B SAFB chaperone, putativ 89.1 3.7 0.00013 34.9 10.8 84 7-94 13-101 (221)
16 1nlw_A MAD protein, MAX dimeri 89.0 0.81 2.8E-05 33.1 5.6 36 179-214 42-77 (80)
17 2xg5_A PAPD, chaperone protein 88.6 6.5 0.00022 33.3 11.9 107 8-128 2-117 (218)
18 1klf_A FIMC chaperone, chapero 87.3 6.6 0.00022 32.9 11.0 110 8-129 2-118 (205)
19 1yew_A Particulate methane mon 86.5 4.1 0.00014 37.6 9.8 67 7-75 249-337 (382)
20 4djm_A DRAB; chaperone, PILI; 86.3 5.2 0.00018 34.5 10.1 84 7-94 23-111 (239)
21 3m48_A General control protein 86.3 1 3.4E-05 27.4 3.8 28 188-215 4-31 (33)
22 2oxj_A Hybrid alpha/beta pepti 85.6 1.7 5.8E-05 26.5 4.6 29 187-215 4-32 (34)
23 3c3g_A Alpha/beta peptide with 85.4 1.6 5.6E-05 26.4 4.4 29 187-215 3-31 (33)
24 1hjb_A Ccaat/enhancer binding 85.2 1.1 3.8E-05 33.1 4.5 45 176-220 35-79 (87)
25 1t2k_D Cyclic-AMP-dependent tr 84.9 2.2 7.5E-05 29.0 5.7 36 179-214 24-59 (61)
26 4ay0_A Chaperone protein CAF1M 84.7 17 0.00058 30.7 13.6 108 7-128 13-127 (218)
27 1l4i_A SFAE protein; periplasm 84.4 11 0.00037 31.5 11.0 110 8-129 2-118 (206)
28 1uo4_A General control protein 84.3 2.1 7.2E-05 26.1 4.6 29 187-215 4-32 (34)
29 1dh3_A Transcription factor CR 84.2 1.8 6.3E-05 29.0 4.9 31 184-214 22-52 (55)
30 1am9_A Srebp-1A, protein (ster 83.1 2.3 7.7E-05 30.7 5.4 32 179-210 45-76 (82)
31 1ci6_A Transcription factor AT 82.9 2.1 7.2E-05 29.5 4.9 37 178-214 24-60 (63)
32 1jnm_A Proto-oncogene C-JUN; B 82.9 2.1 7E-05 29.3 4.8 35 179-213 24-58 (62)
33 1gu4_A CAAT/enhancer binding p 82.7 2.6 8.9E-05 30.4 5.5 38 177-214 36-73 (78)
34 3c3f_A Alpha/beta peptide with 82.7 2.5 8.6E-05 25.7 4.4 29 187-215 4-32 (34)
35 2bni_A General control protein 82.3 2.4 8.2E-05 25.9 4.3 29 187-215 4-32 (34)
36 2akf_A Coronin-1A; coiled coil 82.2 1.1 3.8E-05 26.5 2.7 28 186-213 1-28 (32)
37 2r39_A FIXG-related protein; s 81.8 6.9 0.00024 29.5 8.0 51 25-75 33-84 (118)
38 1nkp_A C-MYC, MYC proto-oncoge 81.5 3 0.0001 30.5 5.6 33 179-211 47-79 (88)
39 2wuj_A Septum site-determining 81.1 2.6 8.9E-05 28.4 4.7 35 179-213 22-56 (57)
40 2dgc_A Protein (GCN4); basic d 80.7 2.6 9.1E-05 29.0 4.7 31 184-214 30-60 (63)
41 1nkp_A C-MYC, MYC proto-oncoge 80.7 2.6 9E-05 30.8 5.0 34 179-212 54-87 (88)
42 3gfu_C Chaperone protein FAEE; 80.6 26 0.00088 29.8 13.4 105 8-128 2-113 (224)
43 2jee_A YIIU; FTSZ, septum, coi 80.6 1.7 5.9E-05 31.7 3.9 31 175-205 11-41 (81)
44 2jee_A YIIU; FTSZ, septum, coi 79.2 0.97 3.3E-05 33.1 2.1 39 173-211 30-68 (81)
45 2wt7_A Proto-oncogene protein 78.8 4.8 0.00016 27.5 5.6 35 179-213 25-59 (63)
46 1hlo_A Protein (transcription 78.0 2.6 8.9E-05 30.1 4.2 28 179-206 52-79 (80)
47 3rfr_A PMOB; membrane, oxidore 77.3 8.9 0.0003 35.7 8.5 66 7-75 283-369 (419)
48 1nkp_B MAX protein, MYC proto- 76.8 3.8 0.00013 29.3 4.8 32 180-211 50-81 (83)
49 1nlw_A MAD protein, MAX dimeri 76.6 3.9 0.00013 29.4 4.8 31 180-210 50-80 (80)
50 1gd2_E Transcription factor PA 76.4 1.2 4.1E-05 31.6 1.9 34 179-212 31-64 (70)
51 2wq1_A General control protein 76.2 5.9 0.0002 24.0 4.6 28 188-215 4-31 (33)
52 1gu4_A CAAT/enhancer binding p 75.5 3.3 0.00011 29.9 4.1 42 181-222 33-74 (78)
53 1a93_B MAX protein, coiled coi 75.0 6.4 0.00022 24.1 4.6 28 183-210 6-33 (34)
54 2hy6_A General control protein 74.7 5.7 0.0002 24.2 4.3 29 187-215 4-32 (34)
55 1jnm_A Proto-oncogene C-JUN; B 74.5 6.4 0.00022 26.7 5.2 38 183-220 21-58 (62)
56 1gd2_E Transcription factor PA 73.5 3.8 0.00013 29.0 3.9 38 174-211 33-70 (70)
57 2oqq_A Transcription factor HY 72.5 3 0.0001 26.7 2.8 32 176-207 9-40 (42)
58 2r2v_A GCN4 leucine zipper; co 72.3 7.7 0.00026 23.6 4.5 28 188-215 5-32 (34)
59 1a93_A Coiled coil, LZ, MYC pr 71.8 8.5 0.00029 23.5 4.6 27 185-211 8-34 (34)
60 2yy0_A C-MYC-binding protein; 71.7 8.7 0.0003 25.6 5.2 28 186-213 21-48 (53)
61 1kd8_A GABH AIV, GCN4 acid bas 70.8 7.3 0.00025 24.0 4.2 26 188-213 5-30 (36)
62 1kd8_B GABH BLL, GCN4 acid bas 69.3 6.6 0.00023 24.2 3.8 27 188-214 5-31 (36)
63 1go4_E MAD1 (mitotic arrest de 68.3 8.8 0.0003 29.0 5.2 33 178-210 13-45 (100)
64 3m9b_A Proteasome-associated A 68.3 2.4 8.3E-05 37.1 2.3 33 179-211 63-95 (251)
65 2wt7_A Proto-oncogene protein 68.3 9.9 0.00034 25.9 5.0 33 183-215 22-54 (63)
66 1t2k_D Cyclic-AMP-dependent tr 67.9 9.7 0.00033 25.6 4.9 31 184-214 22-52 (61)
67 2wg5_A General control protein 67.7 5.8 0.0002 30.1 4.1 26 187-212 10-35 (109)
68 2wt7_B Transcription factor MA 67.1 12 0.00041 27.7 5.6 35 180-214 51-85 (90)
69 1go4_E MAD1 (mitotic arrest de 66.2 8.7 0.0003 29.0 4.7 31 183-213 11-41 (100)
70 2dgc_A Protein (GCN4); basic d 66.1 7 0.00024 26.8 3.9 32 177-208 30-61 (63)
71 1hjb_A Ccaat/enhancer binding 65.7 3.4 0.00012 30.4 2.3 41 181-221 33-73 (87)
72 3zy7_A AP-1 complex subunit ga 65.7 14 0.0005 28.3 6.1 81 25-109 31-121 (122)
73 3m91_A Proteasome-associated A 65.7 5.6 0.00019 26.4 3.2 33 178-210 17-49 (51)
74 2oxj_A Hybrid alpha/beta pepti 65.2 17 0.00059 22.0 5.0 29 179-207 3-31 (34)
75 1fmh_A General control protein 64.5 13 0.00045 21.8 4.2 26 186-211 3-28 (33)
76 1uii_A Geminin; human, DNA rep 64.3 15 0.00053 26.7 5.6 35 179-213 41-75 (83)
77 3s9g_A Protein hexim1; cyclin 64.3 9.6 0.00033 28.8 4.6 27 185-211 66-92 (104)
78 2w6a_A ARF GTPase-activating p 62.1 10 0.00036 26.0 4.0 37 176-212 26-62 (63)
79 2wuj_A Septum site-determining 61.4 7.3 0.00025 26.2 3.2 30 178-207 28-57 (57)
80 1deb_A APC protein, adenomatou 59.5 26 0.00089 23.2 5.5 26 177-202 3-28 (54)
81 1dh3_A Transcription factor CR 59.4 8 0.00027 25.8 3.1 30 179-208 24-53 (55)
82 3hnw_A Uncharacterized protein 59.3 12 0.00042 29.6 4.7 20 178-197 76-95 (138)
83 1dip_A Delta-sleep-inducing pe 58.6 17 0.00057 26.0 4.7 30 176-205 14-43 (78)
84 1kd8_A GABH AIV, GCN4 acid bas 58.5 25 0.00085 21.6 4.9 30 179-208 3-32 (36)
85 3kin_B Kinesin heavy chain; mo 57.8 16 0.00056 27.9 5.1 34 179-212 84-117 (117)
86 4dzn_A Coiled-coil peptide CC- 57.8 24 0.00083 20.7 4.6 26 186-211 4-29 (33)
87 2l5g_B Putative uncharacterize 57.8 22 0.00077 22.6 4.8 33 180-212 5-37 (42)
88 1ci6_A Transcription factor AT 57.2 20 0.00067 24.4 4.9 31 183-213 22-52 (63)
89 1gyu_A Adapter-related protein 56.9 26 0.0009 27.5 6.3 67 25-95 49-121 (140)
90 1iu1_A Gamma1-adaptin; coated 56.6 32 0.0011 27.2 6.9 67 25-95 55-127 (146)
91 3w03_C DNA repair protein XRCC 56.5 17 0.00056 30.4 5.2 33 181-213 149-181 (184)
92 3mq7_A Bone marrow stromal ant 56.1 12 0.00041 29.1 4.0 30 184-213 71-100 (121)
93 2w6b_A RHO guanine nucleotide 55.7 22 0.00074 23.9 4.7 27 182-208 8-34 (56)
94 2zxx_A Geminin; coiled-coil, c 54.3 16 0.00054 26.4 4.1 32 181-212 38-69 (79)
95 2yy0_A C-MYC-binding protein; 53.5 22 0.00075 23.5 4.5 32 178-209 20-51 (53)
96 2zvf_A Alanyl-tRNA synthetase; 52.8 18 0.00061 28.6 4.8 37 175-211 23-59 (171)
97 2xdj_A Uncharacterized protein 52.5 29 0.00099 25.1 5.4 35 179-213 22-56 (83)
98 3idu_A Uncharacterized protein 50.5 42 0.0014 25.9 6.5 68 22-98 32-100 (127)
99 2wt7_B Transcription factor MA 49.6 27 0.00094 25.7 4.9 29 184-212 48-76 (90)
100 2xzz_A Protein-glutamine gamma 49.3 70 0.0024 23.6 7.3 52 21-76 18-75 (102)
101 1uii_A Geminin; human, DNA rep 49.3 33 0.0011 25.0 5.2 31 181-211 50-80 (83)
102 1kd8_B GABH BLL, GCN4 acid bas 48.5 45 0.0015 20.4 5.0 30 179-208 3-32 (36)
103 3vmx_A Voltage-gated hydrogen 45.9 33 0.0011 22.5 4.2 21 193-213 20-40 (48)
104 1yhn_B RILP, RAB interacting l 45.8 51 0.0017 22.7 5.4 42 187-228 6-47 (65)
105 1wlq_A Geminin; coiled-coil; 2 45.1 43 0.0015 24.3 5.2 31 181-211 35-65 (83)
106 3c3f_A Alpha/beta peptide with 44.6 50 0.0017 19.9 5.0 29 179-207 3-31 (34)
107 2aze_A Transcription factor DP 44.2 21 0.00071 29.0 3.8 25 184-208 5-29 (155)
108 2w83_C C-JUN-amino-terminal ki 43.7 54 0.0018 23.5 5.5 34 180-213 33-66 (77)
109 3nmd_A CGMP dependent protein 43.3 38 0.0013 24.0 4.6 30 183-212 39-68 (72)
110 3ra3_B P2F; coiled coil domain 42.7 22 0.00077 20.1 2.7 17 195-211 4-20 (28)
111 3a2a_A Voltage-gated hydrogen 42.5 66 0.0023 21.6 5.4 37 177-213 11-47 (58)
112 2wvr_A Geminin; DNA replicatio 42.3 43 0.0015 28.3 5.6 31 181-211 119-149 (209)
113 4emc_A Monopolin complex subun 42.3 25 0.00086 29.4 4.1 34 180-213 23-56 (190)
114 2huh_A Putative DNA mismatch r 41.9 57 0.002 26.1 6.1 65 26-98 29-94 (147)
115 2wq1_A General control protein 41.9 56 0.0019 19.6 5.0 28 180-207 3-30 (33)
116 4emc_A Monopolin complex subun 41.5 45 0.0015 27.8 5.6 24 179-202 36-59 (190)
117 3he5_A Synzip1; heterodimeric 41.2 52 0.0018 20.9 4.5 25 187-211 6-30 (49)
118 3m48_A General control protein 40.8 41 0.0014 20.3 3.8 28 180-207 3-30 (33)
119 2wvr_A Geminin; DNA replicatio 40.7 43 0.0015 28.3 5.4 36 179-214 110-145 (209)
120 3s4r_A Vimentin; alpha-helix, 39.4 61 0.0021 23.7 5.5 33 180-212 59-91 (93)
121 2aze_B Transcription factor E2 39.2 50 0.0017 24.8 5.1 36 176-211 5-40 (106)
122 4h22_A Leucine-rich repeat fli 38.8 65 0.0022 24.3 5.6 22 190-211 43-64 (103)
123 3c3g_A Alpha/beta peptide with 38.4 64 0.0022 19.4 5.0 29 179-207 2-30 (33)
124 3q0x_A Centriole protein; cent 37.3 31 0.0011 29.6 4.1 41 174-214 175-215 (228)
125 4etp_A Kinesin-like protein KA 37.3 46 0.0016 30.6 5.5 8 214-221 64-71 (403)
126 2l5g_A GPS2 protein, G protein 36.9 60 0.002 20.1 4.2 22 181-202 12-33 (38)
127 1s1c_X RHO-associated, coiled- 36.8 70 0.0024 22.5 5.2 28 183-210 5-32 (71)
128 3q8t_A Beclin-1; autophagy, AT 36.7 71 0.0024 23.4 5.5 34 179-212 20-53 (96)
129 3s9g_A Protein hexim1; cyclin 36.5 73 0.0025 23.9 5.4 22 181-202 34-55 (104)
130 2hy6_A General control protein 35.2 75 0.0026 19.2 4.8 29 179-207 3-31 (34)
131 3ol1_A Vimentin; structural ge 34.9 31 0.001 26.4 3.3 34 184-217 20-53 (119)
132 1wlq_A Geminin; coiled-coil; 2 34.9 65 0.0022 23.4 4.8 32 180-211 41-72 (83)
133 3twe_A Alpha4H; unknown functi 33.8 49 0.0017 18.5 3.1 17 197-213 7-23 (27)
134 2j5u_A MREC protein; bacterial 33.7 33 0.0011 29.5 3.7 14 200-213 45-58 (255)
135 3i00_A HIP-I, huntingtin-inter 33.5 41 0.0014 25.9 3.9 19 195-213 65-83 (120)
136 2v66_B Nuclear distribution pr 33.3 76 0.0026 24.2 5.3 31 180-210 31-61 (111)
137 3q4f_C DNA repair protein XRCC 33.2 47 0.0016 27.6 4.3 21 191-211 161-181 (186)
138 2ve7_C Kinetochore protein NUF 33.1 17 0.00058 31.4 1.7 36 178-213 142-177 (250)
139 1p4u_A ADP-ribosylation factor 32.5 81 0.0028 25.0 5.6 65 27-95 57-131 (153)
140 2e9g_A AP-1 complex subunit ga 32.4 25 0.00084 27.2 2.4 42 24-65 39-84 (131)
141 3trt_A Vimentin; cytoskeleton, 32.2 66 0.0023 22.1 4.5 26 186-211 51-76 (77)
142 1dip_A Delta-sleep-inducing pe 32.0 53 0.0018 23.4 3.9 31 183-213 14-44 (78)
143 2oqq_A Transcription factor HY 31.6 1E+02 0.0034 19.5 5.6 34 180-213 6-39 (42)
144 4ath_A MITF, microphthalmia-as 31.1 56 0.0019 23.7 4.0 27 179-205 34-60 (83)
145 3m9b_A Proteasome-associated A 30.7 38 0.0013 29.5 3.6 43 176-218 53-95 (251)
146 3vta_A Cucumisin; subtilisin-l 30.6 1.9E+02 0.0064 27.8 8.9 51 24-74 538-591 (621)
147 3e38_A Two-domain protein cont 30.4 1.4E+02 0.0047 26.7 7.4 65 27-98 270-334 (343)
148 1zxa_A CGMP-dependent protein 30.0 78 0.0027 22.0 4.4 30 184-213 25-54 (67)
149 1uix_A RHO-associated kinase; 29.7 1E+02 0.0034 21.7 5.0 9 182-190 16-24 (71)
150 3mq9_A Bone marrow stromal ant 29.6 39 0.0014 30.8 3.7 34 179-212 438-471 (471)
151 3mud_A DNA repair protein XRCC 29.4 80 0.0027 26.0 5.1 32 179-210 137-168 (175)
152 3hnw_A Uncharacterized protein 29.3 53 0.0018 25.8 4.0 7 201-207 113-119 (138)
153 2z5i_A TM, general control pro 29.2 1.2E+02 0.0041 19.8 5.2 32 179-210 14-45 (52)
154 3ra3_A P1C; coiled coil domain 29.2 53 0.0018 18.6 2.8 24 188-211 4-27 (28)
155 1bb1_B Designed, thermostable 29.0 94 0.0032 18.5 4.5 29 185-213 3-31 (36)
156 3hn9_A Lamin-B1; structural ge 28.3 94 0.0032 23.7 5.2 41 27-68 25-71 (123)
157 2r2v_A GCN4 leucine zipper; co 28.2 1E+02 0.0035 18.6 5.0 29 179-207 3-31 (34)
158 1wm3_A Ubiquitin-like protein 27.4 53 0.0018 22.2 3.2 21 28-48 3-23 (72)
159 1joc_A EEA1, early endosomal a 27.4 93 0.0032 23.7 5.0 29 181-209 8-36 (125)
160 2xdj_A Uncharacterized protein 26.8 86 0.0029 22.5 4.4 34 175-208 25-58 (83)
161 1wt6_A Myotonin-protein kinase 26.7 1.2E+02 0.0041 21.9 5.0 31 183-213 37-67 (81)
162 3viq_A SWI5-dependent recombin 26.6 77 0.0026 24.4 4.4 24 188-211 4-27 (122)
163 1rtm_1 Mannose-binding protein 26.5 62 0.0021 24.4 3.9 25 189-213 2-26 (149)
164 3w03_C DNA repair protein XRCC 26.5 67 0.0023 26.6 4.2 28 185-212 146-173 (184)
165 1hlo_A Protein (transcription 26.5 1.1E+02 0.0036 21.4 4.8 27 187-213 53-79 (80)
166 3m91_A Proteasome-associated A 26.5 1.4E+02 0.0047 19.5 5.3 37 178-214 10-46 (51)
167 2jn6_A Protein CGL2762, transp 26.4 6.5 0.00022 28.1 -1.8 25 189-213 64-88 (97)
168 2eqb_B RAB guanine nucleotide 26.4 1.5E+02 0.0052 22.0 5.8 13 198-210 47-59 (97)
169 3u06_A Protein claret segregat 26.2 95 0.0033 28.6 5.7 11 214-224 64-74 (412)
170 2ve7_A Kinetochore protein HEC 26.2 95 0.0033 27.4 5.5 19 192-210 186-204 (315)
171 2kes_A Synphilin-1; synphillin 26.2 1.3E+02 0.0045 19.2 4.9 30 182-211 9-38 (48)
172 3v2d_2 50S ribosomal protein L 26.1 1.3E+02 0.0046 20.8 5.2 20 194-213 19-38 (72)
173 3vmx_A Voltage-gated hydrogen 25.9 71 0.0024 20.8 3.4 33 175-207 9-41 (48)
174 4ani_A Protein GRPE; chaperone 25.5 1.1E+02 0.0039 25.7 5.6 35 179-213 61-95 (213)
175 3viq_B Mating-type switching p 24.9 73 0.0025 23.2 3.7 25 181-205 5-29 (85)
176 3swk_A Vimentin; cytoskeleton, 24.1 38 0.0013 24.4 2.0 32 180-211 3-34 (86)
177 1mof_A Moloney murine leukemia 24.0 1.7E+02 0.0057 19.6 6.0 38 179-216 4-41 (55)
178 2w6a_A ARF GTPase-activating p 23.7 73 0.0025 21.8 3.2 31 181-211 24-54 (63)
179 3v86_A De novo design helix; c 23.6 1.1E+02 0.0036 17.2 3.5 20 189-208 5-24 (27)
180 4b4t_J 26S protease regulatory 23.4 81 0.0028 29.1 4.6 34 179-212 34-67 (405)
181 3sja_C Golgi to ER traffic pro 23.1 1.5E+02 0.0051 20.5 4.8 18 195-212 36-53 (65)
182 2io0_B Small ubiquitin-related 22.8 73 0.0025 22.9 3.4 22 27-48 6-27 (91)
183 3htk_A Structural maintenance 22.7 1.5E+02 0.0053 19.1 4.8 22 184-205 33-54 (60)
184 1fzc_C Fibrin; blood coagulati 22.7 1E+02 0.0035 27.5 5.0 42 172-213 6-47 (319)
185 3q4f_C DNA repair protein XRCC 22.6 1.3E+02 0.0043 25.0 5.1 28 180-207 157-184 (186)
186 3tnu_B Keratin, type II cytosk 22.4 1.1E+02 0.0039 23.2 4.6 33 176-208 35-67 (129)
187 1ifr_A Lamin A/C; immunoglobul 22.3 1.2E+02 0.004 23.1 4.7 42 27-68 19-66 (121)
188 1l8d_A DNA double-strand break 22.1 1.5E+02 0.0051 21.5 5.1 34 178-211 11-44 (112)
189 3cl3_D NF-kappa-B essential mo 22.1 18 0.00062 28.4 -0.1 39 171-209 10-48 (130)
190 1l8d_A DNA double-strand break 22.0 1.8E+02 0.0061 21.0 5.6 28 184-211 71-98 (112)
191 2qdq_A Talin-1; dimerisation d 22.0 1.6E+02 0.0054 19.3 4.5 27 180-206 11-37 (50)
192 2zqm_A Prefoldin beta subunit 21.8 80 0.0027 23.1 3.6 33 178-210 78-110 (117)
193 3mtu_E Head morphogenesis prot 21.8 95 0.0033 22.2 3.7 35 176-210 36-70 (77)
194 3tnu_A Keratin, type I cytoske 21.7 1.4E+02 0.0047 22.8 5.0 32 176-207 37-68 (131)
195 1ic2_A Tropomyosin alpha chain 21.4 1.6E+02 0.0056 20.5 5.0 35 177-211 27-61 (81)
196 2v4h_A NF-kappa-B essential mo 21.2 66 0.0023 24.5 2.9 21 195-215 87-107 (110)
197 1y4m_A HERV-FRD_6P24.1 proviru 20.9 1.7E+02 0.0059 19.3 4.6 36 181-216 4-39 (53)
198 2wg5_A General control protein 20.8 93 0.0032 23.2 3.7 27 179-205 9-35 (109)
199 3iyn_Q Protein IX, PIX, hexon- 20.8 52 0.0018 25.8 2.3 24 190-213 104-127 (140)
200 3s4r_A Vimentin; alpha-helix, 20.6 84 0.0029 22.9 3.3 32 183-214 55-86 (93)
201 1zme_C Proline utilization tra 20.6 1.1E+02 0.0038 20.0 3.8 23 185-207 45-67 (70)
202 4ati_A MITF, microphthalmia-as 20.5 85 0.0029 23.8 3.5 21 179-199 69-89 (118)
203 3efg_A Protein SLYX homolog; x 20.2 90 0.0031 22.1 3.3 36 179-214 23-58 (78)
No 1
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=100.00 E-value=3.1e-38 Score=261.62 Aligned_cols=135 Identities=30% Similarity=0.492 Sum_probs=124.3
Q ss_pred CCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCC
Q 026049 4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM 82 (244)
Q Consensus 4 ~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 82 (244)
++++|.|+|. +|.|.+++++++++.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+ .
T Consensus 15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~ 90 (152)
T 1wic_A 15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V 90 (152)
T ss_dssp CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence 4689999998 9999999999999999999999999999999999999999999999999999999999999853 2
Q ss_pred CCCceEEEEEEEcC--CCCCcCCcchhhhcccCCCcceEEEeEEEEeCCCCCCCCCCCCCCCC
Q 026049 83 QCKDKFLLQGVVAS--PGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRPPSPVHEGSEEG 143 (244)
Q Consensus 83 ~~kDKFlVqs~~v~--~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p~~~~s~~~~~~~~~ 143 (244)
+|+|||+||++.++ ++.+.+|+. ++|++..+..++++||||+|+.+++|+|++.+|.++|
T Consensus 91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~~ 152 (152)
T 1wic_A 91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSSG 152 (152)
T ss_dssp CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSCC
T ss_pred CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCCC
Confidence 79999999999999 566666775 8999988889999999999999999999999998765
No 2
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=100.00 E-value=5.9e-36 Score=246.30 Aligned_cols=128 Identities=32% Similarity=0.612 Sum_probs=115.6
Q ss_pred CCCCCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 1 mm~~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
|...+.+|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.. +
T Consensus 8 m~~~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~-~ 86 (147)
T 2cri_A 8 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDY-D 86 (147)
T ss_dssp CCCCCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCC-C
T ss_pred cCCCCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcC-C
Confidence 4445689999997 9999999999999999999999999999999999999999999999999999999999999853 5
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeCCCCC
Q 026049 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAPPRP 132 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p~~~ 132 (244)
++++|+|||+||++.++++. .|+ .++|++..+..++++||||+|+.|++.
T Consensus 87 p~~~~kDKFlVqs~~~~~~~--~d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~ 136 (147)
T 2cri_A 87 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFEMPNEN 136 (147)
T ss_dssp TTCCSCCCEEEEEEECCTTC--CCH-HHHHHHSCTTTCEEEEEEEEEECSCCS
T ss_pred ccccCCCEEEEEEEEcCCCc--ccH-HHHhhcCCCCceEEEEEEEEEecCCCC
Confidence 56799999999999999865 355 589998888889999999999988764
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=100.00 E-value=3e-35 Score=236.40 Aligned_cols=123 Identities=33% Similarity=0.622 Sum_probs=112.2
Q ss_pred CCCCCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 1 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 1 mm~~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
|...+++|.|+|. +|.|.+++++.+++.|+|+|+++++||||||||+|++|+|||+.|+|.||++++|.|++|++.. +
T Consensus 4 m~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V~~~~~~~-~ 82 (128)
T 1z9l_A 4 MAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQPFDY-D 82 (128)
T ss_dssp CCSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEEEECCCCC-C
T ss_pred CCCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEEEECcCcC-C
Confidence 4556789999996 9999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEe
Q 026049 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~ 127 (244)
++++|+|||+||++.++++. .|+ .++|++..+..++++||||+|.
T Consensus 83 p~~~~~dkF~V~s~~~~~~~--~~~-~~~w~~~~~~~i~e~kLrv~f~ 127 (128)
T 1z9l_A 83 PNEKSKHKFMVQTIFAPPNI--SDM-EAVWKEAKPDELMDSKLRCVFE 127 (128)
T ss_dssp TTCCCCCEEEEEEEECCTTC--SCH-HHHHHSCCGGGCEEEEEEEEEE
T ss_pred cccccCCEEEEEEEECCCCc--chH-HHHhhcCCCCceEEEEEEEEEe
Confidence 55689999999999999865 366 5899998888999999999996
No 4
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=100.00 E-value=1.4e-32 Score=220.92 Aligned_cols=120 Identities=21% Similarity=0.342 Sum_probs=108.2
Q ss_pred CCcceEEeCC-eeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCC
Q 026049 4 TGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDM 82 (244)
Q Consensus 4 ~~~lL~I~P~-eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~ 82 (244)
....|.++|. +|.|.+|+++++++.|+|+|+|+++||||||||+|++|||||++|+|.||+++.|.|+||++.+.|++
T Consensus 5 ~~~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V~~q~~~~~~~~- 83 (126)
T 1msp_A 5 PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAVSCDTFNAATED- 83 (126)
T ss_dssp CCCCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEEEECCCCGGGSC-
T ss_pred CCCeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEEEecCCCCCCCc-
Confidence 3467999997 99999999999999999999999999999999999999999999999999999999999999766655
Q ss_pred CCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEe
Q 026049 83 QCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYV 127 (244)
Q Consensus 83 ~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~ 127 (244)
..+|||+|||+.++++.+ +|+..+||.++ ..+..++|+|.|.
T Consensus 84 ~~kDKf~Vq~~~~p~~~~-~~~~~~wf~~d--~~~~~k~L~V~Yn 125 (126)
T 1msp_A 84 LNNDRITIEWTNTPDGAA-KQFRREWFQGD--GMVRRKNLPIEYN 125 (126)
T ss_dssp CSSCEEEEEEEECCTTCC-SSCCTHHHHSS--SCCEEEEEEEEEE
T ss_pred cCCCEEEEEEEECCCCcc-hhhhHHhhcCC--CceEEEEEEEEec
Confidence 459999999999998864 68887888654 3589999999996
No 5
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.96 E-value=2.1e-28 Score=192.38 Aligned_cols=104 Identities=24% Similarity=0.352 Sum_probs=90.4
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCCce
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDK 87 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDK 87 (244)
|.|+|.+|.|+++. .++.|+|+|+++++||||||||+|++|||||++|+|+||++++|.|++|++ + .++||
T Consensus 3 L~i~P~~l~F~~~~---~~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I~~q~~---~---~~~dK 73 (109)
T 1row_A 3 LTADPPACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAG---A---PKEDK 73 (109)
T ss_dssp CEEESSSEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEEEECSC---C---CEEEE
T ss_pred EEEECCEeEEeCCC---CeEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CCCCE
Confidence 89999999999873 479999999999999999999999999999999999999999999999985 2 48999
Q ss_pred EEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEE
Q 026049 88 FLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (244)
Q Consensus 88 FlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~ 125 (244)
|+||++.++++. .|. .++|++... .++.+|++.
T Consensus 74 flvq~~~~~~~~--~d~-~~~fk~~~~--~g~~~i~l~ 106 (109)
T 1row_A 74 LVVHFASAPADA--TDA-QAAFVAVAP--AGTVTIPMS 106 (109)
T ss_dssp EEEEEEECCTTC--SCH-HHHHTTCCC--CEEEEEEEE
T ss_pred EEEEEEECCCCC--CCH-HHHhhcCCC--CceEEEEEE
Confidence 999999998764 354 589988654 456666654
No 6
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=99.95 E-value=1.5e-27 Score=189.34 Aligned_cols=107 Identities=22% Similarity=0.369 Sum_probs=93.6
Q ss_pred CcceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCC
Q 026049 5 GELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQC 84 (244)
Q Consensus 5 ~~lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~ 84 (244)
..++.++|.+|.|+++ +.++.|+|+|+|+++||||||||+|++|||||++|+|+||++++|.|++|++ + .+
T Consensus 8 ~~~~~~~p~~l~F~~~---gg~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I~~q~~---~---~k 78 (116)
T 1m1s_A 8 HSMINVDPPTGNYPAT---GGNSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDINRLPG---P---PK 78 (116)
T ss_dssp CCSEEEESSEEEECTT---CEEEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEEEECSC---C---SC
T ss_pred ceeeecCCCeEEEecC---CCEEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEEEeCCC---C---CC
Confidence 3689999999999986 3589999999999999999999999999999999999999999999999987 2 47
Q ss_pred CceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEE
Q 026049 85 KDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVL 125 (244)
Q Consensus 85 kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~ 125 (244)
+|||+||++.++++. .|. .++|++..+ .++.+|++.
T Consensus 79 ~DKflVq~~~~~~d~--~d~-~~~fk~~~~--~g~~~i~l~ 114 (116)
T 1m1s_A 79 EDKIVIQYAEVPAEE--TDP-MAPFKAGAQ--QGEIIVKLI 114 (116)
T ss_dssp EEEEEEEEEEECTTC--CCT-THHHHTTCC--CEEEEEEEE
T ss_pred CCEEEEEEEECCCCC--CCH-HHHHhcCCC--CceEEEEEE
Confidence 999999999998754 354 589988654 578888764
No 7
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=2.9e-06 Score=66.34 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCeeeeec-cCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCC
Q 026049 12 PQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 12 P~eL~F~~-~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (244)
|+.|.|.. +.+......+.|+|.++.++.|++++. .-|.|.|+.|.|.||+++.|.|+..|..
T Consensus 29 p~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V~F~P~~ 92 (122)
T 2ys4_A 29 PDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEVEFEPQS 92 (122)
T ss_dssp CSEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEEEECCSS
T ss_pred CCeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEEEEEcCC
Confidence 66788876 356677899999999999999999974 4799999999999999999999999874
No 8
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.97 E-value=2.6e-05 Score=59.26 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCcceEEeCCeeeeecc-CCCeeEEEEEEEcCCCCeEEEEeeecCC---CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 4 TGELLNIEPQELQFPFE-LRKQISCSLQLSNKTDNYVAFKVKTTNP---KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 4 ~~~lL~I~P~eL~F~~~-~~~~~~~~L~L~N~s~~~VAFKVKTT~P---~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
.+..+.+++..|.|-.- .+......++|+|+++.+..|++..... ..|.+.|+.|.|.||++..|.|++.+.
T Consensus 6 ~~P~i~~~~~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~ 81 (112)
T 2e6j_A 6 SGPKIHFNFELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSI 81 (112)
T ss_dssp CCCSEEESCSEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCC
T ss_pred CCCEEEECcccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECC
Confidence 34678899988888763 5667888999999999999999964221 469999999999999999999999985
No 9
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=97.95 E-value=5.9e-05 Score=60.75 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=59.6
Q ss_pred cceEEeCCeeeeec-cCCCeeEEEEEEEcCCCCeEEEEeeec------CCCcEEEeCCCeeeCCCCeEEEEEEecc
Q 026049 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTT------NPKKYCVRPNTGVVLPRSTCDVIVTMQS 74 (244)
Q Consensus 6 ~lL~I~P~eL~F~~-~~~~~~~~~L~L~N~s~~~VAFKVKTT------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~ 74 (244)
+-+.+++.+|.|-. .+....++.++|+|++.-+..|++.-. .+.-+.|.|..|.|.||+++.|.|++.-
T Consensus 25 P~i~v~~~~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v 100 (140)
T 3qbt_B 25 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYV 100 (140)
T ss_dssp CCEEESCCEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECB
T ss_pred CceEeeeeeEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEE
Confidence 56888999999986 467788999999999999999998752 3446889999999999999999999874
No 10
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=97.45 E-value=0.00058 Score=62.92 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=59.5
Q ss_pred cceEEeCCeeeeec-cCCCeeEEEEEEEcCCCCeEEEEeeecCC------CcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 6 ELLNIEPQELQFPF-ELRKQISCSLQLSNKTDNYVAFKVKTTNP------KKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 6 ~lL~I~P~eL~F~~-~~~~~~~~~L~L~N~s~~~VAFKVKTT~P------~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
+-+.|++.++.|-. .+....+..|+|+|++.-+..|++..... .-+.|.|..|.|.||+++.|.|++...
T Consensus 28 P~v~v~~~~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~ 104 (366)
T 3qis_A 28 PSLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVS 104 (366)
T ss_dssp CCEEESCSEEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBC
T ss_pred CeEEEecCeEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEEC
Confidence 56889999999975 57788999999999999999999975422 226799999999999999999998654
No 11
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=96.26 E-value=0.017 Score=49.10 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=58.5
Q ss_pred eEEeCCeeeeecc-CCCeeEEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCC
Q 026049 8 LNIEPQELQFPFE-LRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 8 L~I~P~eL~F~~~-~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (244)
|+++|+.+.|.-- -+......++++|.++.++-++.-.. |.....++..+.|.||++..|.|++.+..
T Consensus 3 i~~~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~vt~~~~~ 71 (220)
T 2qsv_A 3 LQVSNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNLSLAVPR 71 (220)
T ss_dssp EEESCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEEEECCCT
T ss_pred eEEecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEEEEcchh
Confidence 8899999999874 34556789999999999999987544 88888899999999999999999998753
No 12
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.26 E-value=0.08 Score=44.87 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=56.6
Q ss_pred cceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEE-EeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccC
Q 026049 6 ELLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAF-KVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 6 ~lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAF-KVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~ 75 (244)
..+.++ ..+.|-.-.+......++++|.++.++.. +|+|++ +...+.++.+.|.||++..|.|++.+.
T Consensus 118 ~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v~~~~~ 186 (220)
T 2qsv_A 118 GVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRIAVDPQ 186 (220)
T ss_dssp CCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEEEECHH
T ss_pred CEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEEEEecC
Confidence 456777 77777632266778899999999999987 888765 789999999999999999999999875
No 13
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=92.04 E-value=2.6 Score=36.77 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=68.7
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC------C----CcEEEeCCCeeeCCCCeEEEEEEeccCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN------P----KKYCVRPNTGVVLPRSTCDVIVTMQSQKE 77 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~------P----~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e 77 (244)
+.|.|..+.|+.. +-...|+|+|.++.++.-.+...+ | .-|.|-|+.-.|+||+...|.|..... .
T Consensus 30 v~i~~TRvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI~~~~~-~ 105 (257)
T 3q48_A 30 LIAQGTRVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-P 105 (257)
T ss_dssp -CCSCSEEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEEEECCC-C
T ss_pred EEEcceEEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEEEECCC-C
Confidence 6677788888864 235899999999988766654432 1 249999999999999999999987654 3
Q ss_pred CCCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 78 APPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 78 ~p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
+|.|... -|-+..-.+|+.... + ...=......+|++-|.+
T Consensus 106 LP~DrES--lf~lnv~eIPp~~~~-~-------~n~Lqiair~rIKLFyRP 146 (257)
T 3q48_A 106 LPTDRES--LFWLNILEVPPRDED-E-------NNALQFSFRSRFKLFFRP 146 (257)
T ss_dssp CCSSSCE--EEEEEEEEECCC-----------------CCEEEEEEEEEEC
T ss_pred CCCCcee--EEEEEeeecCCCCCC-C-------CceEEEEEEEEEEEEEec
Confidence 6766443 344444444432110 0 001123467889988884
No 14
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=89.23 E-value=0.82 Score=32.95 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+.++..||..|.++...+.++...|+++...|+..+
T Consensus 42 L~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999888888888888888888777654
No 15
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B
Probab=89.14 E-value=3.7 Score=34.90 Aligned_cols=84 Identities=11% Similarity=0.165 Sum_probs=60.5
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecC-----CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 81 (244)
-+.|.+..+.|+... -...|+|+|.++.++.-.+.... ..-|.|-|+.-.|+||+...|.|...+. .+|.|
T Consensus 13 ~v~i~~TRvIy~~~~---k~~sl~l~N~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~lP~D 88 (221)
T 2co7_B 13 SVKLGATRVIYHAGT---AGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTD 88 (221)
T ss_dssp ECEESCSEEEEETTS---SCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEEEECCC-CCCSS
T ss_pred EEEEcceEEEEcCCC---CEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEEeCCEEEECCCCceEEEEEECCC-CCCCC
Confidence 367888889998753 35799999999887765554321 1259999999999999999999988763 46766
Q ss_pred CCCCceEEEEEEE
Q 026049 82 MQCKDKFLLQGVV 94 (244)
Q Consensus 82 ~~~kDKFlVqs~~ 94 (244)
...--.|-|..++
T Consensus 89 rEslf~lnv~eIP 101 (221)
T 2co7_B 89 RETLQWVCIKAVP 101 (221)
T ss_dssp SCEEEEEEEEEEC
T ss_pred ceEEEEEEeecCC
Confidence 4433344444444
No 16
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.02 E-value=0.81 Score=33.12 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+..|..||..|+++...+.+++..|+.|...|+..+
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458888999999999999999999998888887654
No 17
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A
Probab=88.57 E-value=6.5 Score=33.26 Aligned_cols=107 Identities=15% Similarity=0.179 Sum_probs=70.6
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEEeeecC-------CCcEEEeCCCeeeCCCCeEEEEEEeccC-CCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTTN-------PKKYCVRPNTGVVLPRSTCDVIVTMQSQ-KEA 78 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFKVKTT~-------P~~Y~VrP~~GiI~P~~s~~V~Itlq~~-~e~ 78 (244)
+.+++..+.|+... -...|+|+|.++. ++.-.+.... ..-|.|-|+.--|+||+...|.|...+. ...
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~~~l 78 (218)
T 2xg5_A 2 VSLDRTRAVFDGSE---KSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKL 78 (218)
T ss_dssp EEESCSEEEEETTS---SEEEEEEEECCSSSCEEEEEEEECTTSCEECSSSEEEECSEEEECTTCEEEEEEEECGGGGGS
T ss_pred cEeCceEEEEeCCC---CEEEEEEEcCCCCCcEEEEEEEecCCCCccccCCEEEcCCeEEECCCCceEEEEEecCCCCCC
Confidence 56777888888753 4679999999987 7665554422 2349999999999999999999988762 246
Q ss_pred CCCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 79 PPDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 79 p~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
|.|...--.|-|+.++ +... + .+ .=......+|++-|.+
T Consensus 79 P~DrESlf~lnv~eIP--p~~~--~--~n-----~lqia~r~rIKlFyRP 117 (218)
T 2xg5_A 79 PQDRESLFYFNLREIP--PRSE--K--AN-----VLQIALQTKIKLFYRP 117 (218)
T ss_dssp CSSSCEEEEEEEEEEC--CCCC--C--TT-----EEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEeecCC--CCCC--C--Cc-----eEEEEehheeeEEEcC
Confidence 7764433444444444 3211 1 00 0022457889988873
No 18
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C
Probab=87.29 E-value=6.6 Score=32.91 Aligned_cols=110 Identities=8% Similarity=0.117 Sum_probs=70.1
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEEeeec-----CCCcEEEeCCCeeeCCCCeEEEEEEe-ccCCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT-----NPKKYCVRPNTGVVLPRSTCDVIVTM-QSQKEAPP 80 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Itl-q~~~e~p~ 80 (244)
+.+++..+.|+... -...|+|+|.++. ++.-.+... ...-|.|-|+.--|+||+...|.|.. .+. ..|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWi~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~~-~lP~ 77 (205)
T 1klf_A 2 VALGATRVIYPAGQ---KQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNN-QLPQ 77 (205)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCSSCCEEEEEEEEETTSCCCSSEEEESSEEEECSSEEEEEEEEECSCS-CSCS
T ss_pred eEecceEEEEeCCC---cEEEEEEEcCCCCCcEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCCC-CCCC
Confidence 56777888888753 4679999999987 765555432 12359999999999999999999988 653 4676
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeCC
Q 026049 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p 129 (244)
|...--.|-|..++..+... .+-+ .=......+|++-|.+.
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~~n-------~lqia~r~riKlFyRP~ 118 (205)
T 1klf_A 78 DRESLFWMNVKAIPSMDKSK-LTEN-------TLQLAIISRIKLYYRPA 118 (205)
T ss_dssp SSCEEEEEEEEEECCCCTTS-TTSC-------EEEEEEEEEEEEEEECT
T ss_pred CceEEEEEEeEecCCCCccc-cCCc-------eEEEEeeeeeeEEEccc
Confidence 64433344444444322110 0000 00123467888888743
No 19
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=86.46 E-value=4.1 Score=37.57 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=49.5
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcE----------------------EEeCCCeeeCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKY----------------------CVRPNTGVVLPRS 64 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y----------------------~VrP~~GiI~P~~ 64 (244)
.+.++-..-.|.-| ++...-.++++|.++.+|-..==+|+.-+| .|.|+.- |.||+
T Consensus 249 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~p-I~PGE 326 (382)
T 1yew_A 249 TVSVKVEDATYRVP-GRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSP-LAPGE 326 (382)
T ss_dssp SEEEEEEEEEEESS-CSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSC-BCTTC
T ss_pred ceEEEeeccEEecC-CcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCC-cCCCc
Confidence 34444445556655 788899999999999999888556655444 4555544 89999
Q ss_pred eEEEEEEeccC
Q 026049 65 TCDVIVTMQSQ 75 (244)
Q Consensus 65 s~~V~Itlq~~ 75 (244)
+.+|.|+.|.-
T Consensus 327 Tr~~~v~a~da 337 (382)
T 1yew_A 327 TRTVDVTASDA 337 (382)
T ss_dssp EEEEEEEEECH
T ss_pred eeEEEEEeehH
Confidence 99999999854
No 20
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli}
Probab=86.33 E-value=5.2 Score=34.47 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=58.8
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeec-----CCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-----NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPD 81 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT-----~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d 81 (244)
-|.|.+..+.|+..- -...|+|+|.++.++.-.+... ...-|.|-|+.--|+||+...|.|..... .+|.|
T Consensus 23 ~v~l~~TRvIy~~~~---k~~sl~l~N~~~~P~LvQsWv~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~D 98 (239)
T 4djm_A 23 SLHLGATRVVYNPAS---SGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGG-EFPPD 98 (239)
T ss_dssp CCEESCSEEEECTTS---SCEEEEEEECSSSCEEEEEEEECTTSSSBCSEEEESSEEEECTTEEEEEEEEECSC-CCCSS
T ss_pred eEEEcceEEEEeCCC---CEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEcCCeEEECCCCceEEEEEECCC-CCCCC
Confidence 367888889988752 3579999999888765444321 12349999999999999999999987654 36766
Q ss_pred CCCCceEEEEEEE
Q 026049 82 MQCKDKFLLQGVV 94 (244)
Q Consensus 82 ~~~kDKFlVqs~~ 94 (244)
...--.|-|..++
T Consensus 99 RESlf~lnv~eIP 111 (239)
T 4djm_A 99 RESLQWICVKGIP 111 (239)
T ss_dssp SCEEEEEEEEEEC
T ss_pred ceEEEEEEEEecC
Confidence 4433334444444
No 21
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=86.33 E-value=1 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
.|++.-..|+++|..|+.|..+||..+.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4566667788889999999999987654
No 22
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.55 E-value=1.7 Score=26.50 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++--..|.++|..|+.|..+||..+.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34555556677788888888888887654
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=85.43 E-value=1.6 Score=26.41 Aligned_cols=29 Identities=7% Similarity=0.070 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++-...+.++|..|+.|..+||..+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34555666778888899999999987654
No 24
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=85.23 E-value=1.1 Score=33.09 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRP 220 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~ 220 (244)
+.+..++...+..|+.|-..|+.+...|++|+..||..+.-.|..
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 345567788899999999999999999999999999876555543
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=84.92 E-value=2.2 Score=28.97 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
..++...+..|+.+...|..+...|++|+..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777778778888888887777653
No 26
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A
Probab=84.75 E-value=17 Score=30.71 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=65.8
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeec-------CCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCC
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTT-------NPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP 79 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT-------~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p 79 (244)
-+.|+-..+.|+.. .-...|+|+|.++.++.-..... ...-|.|-|+.--|+||+...|.|...+. .+|
T Consensus 13 gv~l~~TRvIy~~~---~k~~sl~l~N~~~~p~LvQswv~~~~~~~~~~~pFivtPPl~Rl~p~~~q~lRI~~~~~-~LP 88 (218)
T 4ay0_A 13 GVTIGESRIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRIAQAGG-VFP 88 (218)
T ss_dssp CEEESCCEEEEETT---CSCEEEEEECCSSSCEEEEEEEECTTSCCCSSCSEEEESSEEEECTTCEEEEEEEECSC-CCC
T ss_pred eEEECceEEEECCC---CcEEEEEEEcCCCCCEEEEEEEecCCCCccccCCEEECCCeEEeCCCCceEEEEEecCC-CCC
Confidence 36667778888764 23578999999988865554331 11249999999999999999999988764 467
Q ss_pred CCCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 80 PDMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 80 ~d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
.|... =|-+....+|+... +- ... =......+||+-|.+
T Consensus 89 ~DRES--lf~lnv~eIPp~~~--~~----~n~--lqia~r~rIKlFyRP 127 (218)
T 4ay0_A 89 RDKES--LKWLCVKGIPPKDE--DI----WVD--VQFAINNCIKLLVRP 127 (218)
T ss_dssp SSSCE--EEEEEEEEECC----------------------CEEEEEEEC
T ss_pred cCcEE--EEEEEEEecCCCCc--cc----cce--eEEEEEEEEEEEEcC
Confidence 66332 34444444444211 10 000 122345788888874
No 27
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1
Probab=84.44 E-value=11 Score=31.50 Aligned_cols=110 Identities=11% Similarity=0.157 Sum_probs=71.4
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCC-CeEEEEeeecC-----CCcEEEeCCCeeeCCCCeEEEEEE-eccCCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTD-NYVAFKVKTTN-----PKKYCVRPNTGVVLPRSTCDVIVT-MQSQKEAPP 80 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~-~~VAFKVKTT~-----P~~Y~VrP~~GiI~P~~s~~V~It-lq~~~e~p~ 80 (244)
+.+++..+.|+... -...|+|+|.++ .++.-.+.... ..-|.|-|+.--|+||+...|.|. ... ...|.
T Consensus 2 v~l~~TRvIy~~~~---k~~sl~l~N~~~~~p~LvQsWv~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~~~-~~lP~ 77 (206)
T 1l4i_A 2 VALGATRVIYPEGQ---KQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGKKENTLRIIDATN-GQMPE 77 (206)
T ss_dssp EEESCSEEEEETTC---SEEEEEEEECCTTCEEEEEEEEEETTSCBCSSEEEESSEEEEESSEEEEEEEEECCT-TCSCS
T ss_pred eEeCceEEEEeCCC---cEEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEEEecCC-CCCCC
Confidence 56777888888752 467999999986 77665554321 234999999999999999999998 654 34677
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeCC
Q 026049 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVAP 129 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~p 129 (244)
|...--.|-|..++..+... .+ ...=......+|++-|.+.
T Consensus 78 DrEslf~lnv~eIPp~~~~~-~~-------~n~lqia~r~riKlFyRP~ 118 (206)
T 1l4i_A 78 DRESLFWVNVKAIPAMDKAK-TG-------ENYLQFAIVSRIKLLYRPQ 118 (206)
T ss_dssp SSCEEEEEEEEEEECCC----------------CCCEEEEEEEEEEECT
T ss_pred CceEEEEEEeecCCCCcccc-cC-------CceEEEEhhheeeEEEecc
Confidence 64444555566665432110 00 0001234678899988843
No 28
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=84.27 E-value=2.1 Score=26.11 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++.-..+.++|..|+.|+.+||....
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 35666667788899999999999987654
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.19 E-value=1.8 Score=29.04 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+++..|+.+...|.++|..|++++..|+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888888888999999888887543
No 30
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=83.10 E-value=2.3 Score=30.70 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+.++..||..|.++...|.+++..|++++...
T Consensus 45 L~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 45 LRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45889999999999999999999999988764
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=82.94 E-value=2.1 Score=29.47 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
...++...+..|+.+...|..+...|+.|+..||..+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888888764
No 32
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=82.89 E-value=2.1 Score=29.26 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++...+..|+.+...|..+...|++|+..|+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666654
No 33
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=82.66 E-value=2.6 Score=30.44 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=28.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+..++...+..|+.|-..|..+...|++|+..||..+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888888888888888888888887654
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.66 E-value=2.5 Score=25.73 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++--..|.++|..|+.|..+||..+.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34555566778888888888888887654
No 35
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.30 E-value=2.4 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++-...+.++|..|+.|+.+||..+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 34555566778888999999999987654
No 36
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=82.15 E-value=1.1 Score=26.53 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
|++|+||...|..-.++||+.+++|-..
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888889999999988653
No 37
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=81.82 E-value=6.9 Score=29.54 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.3
Q ss_pred eEEEEEEEcCCCCeEEEEeeecCCCcEEEe-CCCeeeCCCCeEEEEEEeccC
Q 026049 25 ISCSLQLSNKTDNYVAFKVKTTNPKKYCVR-PNTGVVLPRSTCDVIVTMQSQ 75 (244)
Q Consensus 25 ~~~~L~L~N~s~~~VAFKVKTT~P~~Y~Vr-P~~GiI~P~~s~~V~Itlq~~ 75 (244)
-...|+|.|.+.++..|.++......+.+. |..=.|.||+...+.|.+...
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~g~~~i~v~~g~~~~~~v~v~~~ 84 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWYGKQTIQVEPGEVLNLPMSLGAD 84 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEESCCEEEECTTCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEeCCCcEEECCCCEEEEEEEEEEC
Confidence 357999999999999999988775446553 554577899988888877654
No 38
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=81.54 E-value=3 Score=30.53 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+.++..||..|.++...+.++...|+++-..|+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~ 79 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLK 79 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888877776655444444444444444
No 39
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=81.08 E-value=2.6 Score=28.42 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
-+|.-+.+..+.++...+.+||..|++++..|...
T Consensus 22 ~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 22 EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777788888999999999999999999888653
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=80.74 E-value=2.6 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+.+..|+.+...|..+|..|+.|+..|+..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777778888888888877654
No 41
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.65 E-value=2.6 Score=30.84 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..++......+..+++.+.++|+.|+++|..|+.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3477778889999999999999999999999874
No 42
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A
Probab=80.58 E-value=26 Score=29.83 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=65.4
Q ss_pred eEEeCCeeeeeccCCCeeEEEEEEEcCCCC-eEEEEeeec--C----CCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCC
Q 026049 8 LNIEPQELQFPFELRKQISCSLQLSNKTDN-YVAFKVKTT--N----PKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPP 80 (244)
Q Consensus 8 L~I~P~eL~F~~~~~~~~~~~L~L~N~s~~-~VAFKVKTT--~----P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~ 80 (244)
+.++...+.|+.. .-...|+|+|.++. ++.-.+... . ..-|.|-|+.--|+||+...|.|..... .+|.
T Consensus 2 ~~l~~TRvIy~~~---~k~~sl~l~N~~~~~p~LvQsWid~~~~~~~~~pfivtPPlfRlep~~~q~lRIi~~~~-~LP~ 77 (224)
T 3gfu_C 2 LAVDQTRYIFRGD---KDALTITVTNNDKERTFGGQAWVDNIVEKDTRPTFVVTPSFFKVKPNGQQTLRIIMASD-HLPK 77 (224)
T ss_dssp EECSCSEEEEETT---SSCEEEEEEECCSSCCEEEEEEEEESSCCSCSCSEEEESSEEEECTTCEEEEEEEECSC-CCCS
T ss_pred ccccceEEEEeCC---CceEEEEEEeCCCCccEEEEEEEecCCCCcccCCEEEcCCeEEECCCCceEEEEEECCC-CCCC
Confidence 4556667888864 23579999999875 443332211 1 2249999999999999999999987654 3676
Q ss_pred CCCCCceEEEEEEEcCCCCCcCCcchhhhcccCCCcceEEEeEEEEeC
Q 026049 81 DMQCKDKFLLQGVVASPGATAKDITPEMFNKEAGHHVEECKLRVLYVA 128 (244)
Q Consensus 81 d~~~kDKFlVqs~~v~~~~~~~di~~~~f~k~~~~~i~e~KLrv~f~~ 128 (244)
|...--.|-|..++ +... .+ .=......+|++-|.+
T Consensus 78 DRESlf~lnv~eIP--p~~~-~n---------~Lqiair~rIKLFyRP 113 (224)
T 3gfu_C 78 DKESVYWLNLQDIP--PALE-GS---------GIAVALRTKLKLFYRP 113 (224)
T ss_dssp SSCEEEEEEEEEEC--CCCS-SS---------BCCEEEEEEEEEEEEC
T ss_pred CceEEEEEEeecCC--CCCC-CC---------eEEEEEEEEeeEEEcc
Confidence 64433334444444 3211 00 0133466788888873
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=80.57 E-value=1.7 Score=31.71 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
++.|...++..|..|..|...|.++|..|.+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666666666666666655433
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.23 E-value=0.97 Score=33.05 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=27.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 173 YEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 173 ~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.+++.+...+.+....+...+..+.++|++|++|...-.
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777777778888898988876443
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.81 E-value=4.8 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++...+..|+.+...|..+...|++|+..|+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666667766666644
No 46
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.98 E-value=2.6 Score=30.08 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
+..+..||..|.++...|.+++..|++|
T Consensus 52 L~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 52 LDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999888888887777777765
No 47
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=77.32 E-value=8.9 Score=35.73 Aligned_cols=66 Identities=14% Similarity=0.269 Sum_probs=49.1
Q ss_pred ceEEeCCeeeeeccCCCeeEEEEEEEcCCCCeEEEEeeecCCCcEE--------------------E-eCCCeeeCCCCe
Q 026049 7 LLNIEPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYC--------------------V-RPNTGVVLPRST 65 (244)
Q Consensus 7 lL~I~P~eL~F~~~~~~~~~~~L~L~N~s~~~VAFKVKTT~P~~Y~--------------------V-rP~~GiI~P~~s 65 (244)
.+.++-..-.|.-| ++...-.++++|+++.+|-..==+|+.-+|. + .|+ =|.||++
T Consensus 283 ~V~~~v~~A~Y~vp-gR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~--pI~PGET 359 (419)
T 3rfr_A 283 QVTTELNGGVYKVP-GRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDD--VIAPGES 359 (419)
T ss_dssp CCEEEEEEEEEESS-SSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCC--CBCTTCE
T ss_pred ceEEEEeceEEecC-CcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCCCCC--CcCCCcc
Confidence 34555555666655 7888999999999999998886666555553 0 233 5999999
Q ss_pred EEEEEEeccC
Q 026049 66 CDVIVTMQSQ 75 (244)
Q Consensus 66 ~~V~Itlq~~ 75 (244)
.+|+|+.|.-
T Consensus 360 rt~~V~a~da 369 (419)
T 3rfr_A 360 KEIVVKIQDA 369 (419)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEeehH
Confidence 9999999853
No 48
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=76.85 E-value=3.8 Score=29.34 Aligned_cols=32 Identities=13% Similarity=0.039 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..+...+..|.+|++.|.++|..|+++|..|.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777889999999999999999999998764
No 49
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.60 E-value=3.9 Score=29.45 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
..+.....+|.+|+..|.+++..|+++|..|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4677788899999999999999999998765
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=76.40 E-value=1.2 Score=31.62 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..++...+..|+.+...+..+|..|++++..|..
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666553
No 51
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=76.16 E-value=5.9 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
.|++-...+..+|..|..|..+||..+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4445555666777777777777776654
No 52
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.52 E-value=3.3 Score=29.92 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCch
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFS 222 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~~ 222 (244)
........+..+-..|.+||..|+.++..|+.-+..++-+|.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788889999999999999999988877776663
No 53
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=75.05 E-value=6.4 Score=24.05 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.........+++.+.+||..|+++.-.|
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 3456777888999999999999987544
No 54
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=74.71 E-value=5.7 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
+.|++--..|..+|..|..|..+||..+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 34555556667778888888888877653
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=74.47 E-value=6.4 Score=26.71 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRP 220 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~ 220 (244)
.+.+..|+.+...|..+|..|+.++..|+......+-+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999877665543
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.45 E-value=3.8 Score=28.99 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+++.+..++......|..|...|++++..|+.||..||
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555566666666666777777777777777766554
No 57
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.45 E-value=3 Score=26.66 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=21.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+.+..++......|++-.+.|..||+.|||-|
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33444556666777777777777777777754
No 58
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.25 E-value=7.7 Score=23.62 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
.|+.-...+..++..|+.|+.+|+...+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444455667777778888888887654
No 59
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=71.75 E-value=8.5 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.-.+|..|+..++..+++|++.|++|+
T Consensus 8 dE~kLl~ekE~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 8 EEQKLISEEDLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 336788888999999999999988874
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.69 E-value=8.7 Score=25.55 Aligned_cols=28 Identities=14% Similarity=0.001 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+.+|..|...|++++..|++++.-|+..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555543
No 61
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=70.78 E-value=7.3 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.113 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.|+..-..+..+|..|+.|..+||..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44455555566666666666666654
No 62
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.28 E-value=6.6 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.|++--..|..+|..|+.|..+||...
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 444445556667777777777777553
No 63
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.34 E-value=8.8 Score=28.98 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.+..+...|..|+.|++.|++++..|.-+|++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888888888887777763
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=68.31 E-value=2.4 Score=37.12 Aligned_cols=33 Identities=27% Similarity=0.067 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
...+.+...+|.++.+.+++|..+||+|+++|+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445566678888888888888888888887
No 65
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.28 E-value=9.9 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~ 215 (244)
.+.+..|..+...|..+|..|+.++..|+....
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888999999999998888876543
No 66
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.86 E-value=9.7 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+++..|+.+...+..+|..|+.++..|+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777777777777666543
No 67
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=67.71 E-value=5.8 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..|+++++.+++|..+||+|+.+|+.
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999984
No 68
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=67.11 E-value=12 Score=27.69 Aligned_cols=35 Identities=11% Similarity=0.025 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.++......|..|+..|.+|+..+++|++.++...
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777777777553
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.19 E-value=8.7 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...+.+|+++.+.|..||.+|+++...|...
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999999999999999999998755
No 70
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=66.10 E-value=7 Score=26.85 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=27.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
....++...+..|+.|...|..+...|++++.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999875
No 71
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.70 E-value=3.4 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPF 221 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~ 221 (244)
...+....+..+-..|.+||..|+.++..|+..+..++-+|
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777888888888888888887766555444
No 72
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A
Probab=65.69 E-value=14 Score=28.27 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=48.5
Q ss_pred eEEEEEEEcCCCCeE-EEEeeecCCCcEEEe--CCCe-eeCC--CCeEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026049 25 ISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTG-VVLP--RSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (244)
Q Consensus 25 ~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~Vr--P~~G-iI~P--~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (244)
..-.++.+|.+..+| -|.+..-.|+-|.++ |.+| .|.| +..++=.+.+.... ....+=|+.|.+..-...
T Consensus 31 ~~i~~~~~N~s~~~it~f~fqaAVPKs~kL~L~p~Sg~~l~p~~~~~itQ~l~i~n~~----~~~lklR~klsY~~~g~~ 106 (122)
T 3zy7_A 31 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQ----KQQLRMRIKLTFNWNGYK 106 (122)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGSCCEEEEEEEECTT----CCCCCEEEEEEEEETTEE
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEecCCCCCccCCCCCCCEEEEEEEECCC----CCCEEEEEEEEEEECCEE
Confidence 556788889988666 788888888877665 7777 5888 55554333333221 123556666666543321
Q ss_pred ----CCcCCcchhhh
Q 026049 99 ----ATAKDITPEMF 109 (244)
Q Consensus 99 ----~~~~di~~~~f 109 (244)
.+..+++.+.|
T Consensus 107 ~~E~~~v~~fp~~~~ 121 (122)
T 3zy7_A 107 VQSEAEVNNFPPQSW 121 (122)
T ss_dssp EEEEEEECCCCGGGT
T ss_pred EEEEEEECCCChhhC
Confidence 12334555555
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=65.66 E-value=5.6 Score=26.42 Aligned_cols=33 Identities=27% Similarity=0.134 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
....+.+.=.+|.+-...+++|..+|++|++.|
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555667788888888888888888776
No 74
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.17 E-value=17 Score=22.04 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+..+...+..|-.+.+.|..|..+||.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788899999999999999999998754
No 75
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=64.53 E-value=13 Score=21.85 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+..|++|...+..+|-+|.||...|-
T Consensus 3 vaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45678888899999999999988774
No 76
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=64.34 E-value=15 Score=26.74 Aligned_cols=35 Identities=20% Similarity=-0.028 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+.++...-.+|-++...+..++..||+++..||..
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666666666666643
No 77
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=64.26 E-value=9.6 Score=28.76 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.|..|..|...|+.||+.|++|-..-|
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666666666666666655443
No 78
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=62.06 E-value=10 Score=25.96 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+.+...+.+.=..|.+|...+..+.++||.|...||+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 3455566666667777777777777777777777774
No 79
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.42 E-value=7.3 Score=26.16 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
=++++...+..|.+|...|.+++..|+++|
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356888899999999999999999998865
No 80
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=59.54 E-value=26 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNK 202 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~ 202 (244)
..|+.+...+..|..|-..|++|.+.
T Consensus 3 asYdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 3 ASYDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 35788888999888888888887554
No 81
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.37 E-value=8 Score=25.81 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
..++...+..|++|-..|.+++..|++++.
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568888999999999999999999998753
No 82
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.27 E-value=12 Score=29.56 Aligned_cols=20 Identities=10% Similarity=-0.036 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVI 197 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~ 197 (244)
.+.++.+.+..+.+|...+.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 83
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=58.63 E-value=17 Score=26.04 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=17.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
++..+.++..|..|.+..+.|..||.-||+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555555555554
No 84
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.46 E-value=25 Score=21.59 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
..++...+..|..++..|..|..+||..|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 456778889999999999999999998764
No 85
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=57.82 E-value=16 Score=27.86 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..++...+.+..++...|.++.+.|+.||.+.|.
T Consensus 84 ~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 84 AEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567777888888888999999999999998773
No 86
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=57.78 E-value=24 Score=20.67 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
|..|..|...+.+|...|+-|...|+
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 87
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=57.75 E-value=22 Score=22.59 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+|+.+.|.++..|+....++...||..+..|-.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488899999999999999999999988877654
No 88
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=57.21 E-value=20 Score=24.44 Aligned_cols=31 Identities=23% Similarity=0.080 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+.+..|..+...|.++|..|+.++..|+.-
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777776643
No 89
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2
Probab=56.92 E-value=26 Score=27.51 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=40.2
Q ss_pred eEEEEEEEcCCCCeE-EEEeeecCCCcEEEe--CCCee-eCCCCe--EEEEEEeccCCCCCCCCCCCceEEEEEEEc
Q 026049 25 ISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTGV-VLPRST--CDVIVTMQSQKEAPPDMQCKDKFLLQGVVA 95 (244)
Q Consensus 25 ~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~Vr--P~~Gi-I~P~~s--~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v 95 (244)
..-.++.+|.+..+| -|.+.--.|+-|.++ |.+|- |.|+.. ++=.+.+..... .+.+=|+.|.+..-
T Consensus 49 ~~i~~~f~N~s~~~it~f~fQaAVPKs~kLqL~ppSg~~L~p~~~~~ItQ~m~I~n~~~----~~l~LR~klsY~~~ 121 (140)
T 1gyu_A 49 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSVVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 121 (140)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTCEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 555778899887655 788888888877665 66664 777332 333333322111 13556666666553
No 90
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2
Probab=56.65 E-value=32 Score=27.15 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=40.1
Q ss_pred eEEEEEEEcCCCCeE-EEEeeecCCCcEEEe--CCCee-eCCCC--eEEEEEEeccCCCCCCCCCCCceEEEEEEEc
Q 026049 25 ISCSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTGV-VLPRS--TCDVIVTMQSQKEAPPDMQCKDKFLLQGVVA 95 (244)
Q Consensus 25 ~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~Vr--P~~Gi-I~P~~--s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v 95 (244)
..-.++.+|.+..+| -|.+.--.|+-|.++ |.+|- |.|+. .++=.+.+..... .+.+=|+.|.+..-
T Consensus 55 ~~i~~~f~N~s~~~it~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~ItQ~~~I~n~~~----~~lklR~klsY~~~ 127 (146)
T 1iu1_A 55 TVITIQASNSTELDMTDFVFQAAVPKTFQLQLLSPSSSIVPAFNTGTITQVIKVLNPQK----QQLRMRIKLTYNHK 127 (146)
T ss_dssp EEEEEEEEECSSSCBEEEEEEEECCTTSEEEECCCSCSCBCGGGCCCEEEEEEEECTTC----CCCCCEEEEEEEET
T ss_pred EEEEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 455678899877655 777777888877665 66664 77743 3333333322111 23566677766553
No 91
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=56.47 E-value=17 Score=30.36 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
=+...+..|.++...+.++|++|++|......+
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777776655443
No 92
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=56.10 E-value=12 Score=29.05 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..+.+|.+|+..|.|+.+..-.|+++||+.
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358888888888888888888888888854
No 93
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=55.68 E-value=22 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
++..+-.|..|.+.|.++|++|++-|+
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766554
No 94
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=54.27 E-value=16 Score=26.45 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
++-..|..+.+|.+.+.++|..|+.-+.+.+.
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~ 69 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEHVQY 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778888888888888777766653
No 95
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.49 E-value=22 Score=23.54 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
.++.+......|+.+...|.++++.|+.+|..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567778888888888888899888888763
No 96
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=52.78 E-value=18 Score=28.64 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++.+..++...|.+|.+|...+.+++++|++++....
T Consensus 23 Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 23 LRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp TTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444458889999999999999999999999887654
No 97
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=52.49 E-value=29 Score=25.10 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..++...|..|..|...|+-+++.+..++..+++.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34677788888888888888888888888887643
No 98
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=50.54 E-value=42 Score=25.87 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=48.0
Q ss_pred CCeeEEEEEEEcCCCCe-EEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026049 22 RKQISCSLQLSNKTDNY-VAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (244)
Q Consensus 22 ~~~~~~~L~L~N~s~~~-VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (244)
++.+.-.++++|.+... =+|+|+-...+...-.-..+ |.||++.+|.++..+.. ...+-|..++-+++
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~~v~-La~G~s~tv~f~~~~~~--------~G~~~v~AvVD~~n 100 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVS-LGPKEEKVLTFNWTPTQ--------EGMYRINATVDEEN 100 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEEEEE-ECTTCEEEEEEEECCSS--------CEEEEEEEEESTTC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeEEec-cCCCCeEEEEEEEEcCC--------CcEEEEEEEEcCCC
Confidence 67788899999998855 58888876666655443344 89999999999876431 24456666665544
No 99
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.56 E-value=27 Score=25.73 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
+.+..|+.|...+..|.++|++|+..+.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~ 76 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLAR 76 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666553
No 100
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=49.34 E-value=70 Score=23.62 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCCeeEEEEEEEcCCC---CeEEEEeeecC---CCcEEEeCCCeeeCCCCeEEEEEEeccCC
Q 026049 21 LRKQISCSLQLSNKTD---NYVAFKVKTTN---PKKYCVRPNTGVVLPRSTCDVIVTMQSQK 76 (244)
Q Consensus 21 ~~~~~~~~L~L~N~s~---~~VAFKVKTT~---P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~ 76 (244)
.++...+.++++|+=+ ..+.|.|--.. +..+. .|-|.||+++.+.+.+.|..
T Consensus 18 v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~~~~~----~~~v~pg~~~~~~~~~~P~~ 75 (102)
T 2xzz_A 18 VGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRPKILN----VGDIGGNETVTLRQSFVPVR 75 (102)
T ss_dssp SSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEEEEEE----ECCBCTTCEEEEEEEECCCS
T ss_pred cCCeEEEEEEEECCCCCcccCEEEEEECCCCCcceEEE----cCcCCCCCEEEEEEEEecCc
Confidence 3677899999999966 56688876532 23333 36699999999999998864
No 101
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.33 E-value=33 Score=24.99 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++-..|..|.+|.+.+.++|..|+.--.+++
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556777788888888888888776555543
No 102
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=48.54 E-value=45 Score=20.45 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
..++...+..|-.+...|..|..+||.-|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 457778889999999999999999987654
No 103
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=45.91 E-value=33 Score=22.46 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 026049 193 KNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 193 ~~~~~~en~~Lqqel~~l~~~ 213 (244)
...+.....++.||.++|++.
T Consensus 20 v~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 20 IQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHH
Confidence 334444455555666666654
No 104
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=45.75 E-value=51 Score=22.70 Aligned_cols=42 Identities=19% Similarity=0.014 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHhhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLCHSSFKRPFSPEVCMM 228 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~~~~~~~v~~~ 228 (244)
...-.|||.|..+.--||+||.-.|.-...=+.-.+++.+++
T Consensus 6 r~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~ll~a~ 47 (65)
T 1yhn_B 6 EQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLLLEAM 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHH
Confidence 445568999999999999999988876654555555555554
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=45.06 E-value=43 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.028 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++.+.-.+|-++...+..|...|++|+..|+
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444
No 106
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=44.60 E-value=50 Score=19.94 Aligned_cols=29 Identities=3% Similarity=-0.026 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+..+...+..|-.+...|..|..+||.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45777888999999999999999998654
No 107
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.20 E-value=21 Score=28.99 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+.|.+|++||..+++..++-+++|.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~Lq 29 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQ 29 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777766655554444444
No 108
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.69 E-value=54 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+++.+.+..|+.|+..++.|+..+++-..++...
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778888888888888888888877776644
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.25 E-value=38 Score=23.98 Aligned_cols=30 Identities=30% Similarity=0.238 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
...|..|+.+.+....+.+.||-||+.+|-
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 336777778888888888888888887754
No 110
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=42.71 E-value=22 Score=20.11 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026049 195 SVIQINNKLQQELVRTY 211 (244)
Q Consensus 195 ~~~~en~~Lqqel~~l~ 211 (244)
.+.|.|.+|+||+..|-
T Consensus 4 rlkqknarlkqeiaale 20 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 45667777777776653
No 111
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=42.47 E-value=66 Score=21.63 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+...+.+.=..|....+.|..++.+-.||.++|++.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665667777777888888888899988865
No 112
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.29 E-value=43 Score=28.29 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++-..|..|.+|++.+.++|..|+.-.++++
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666665544444
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.26 E-value=25 Score=29.40 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.++..+...|.++.+..-+|++.||++|..|+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~ 56 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQ 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555555556666666666666543
No 114
>2huh_A Putative DNA mismatch repair protein; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.54A {Bacteroides thetaiotaomicron} SCOP: b.7.5.1
Probab=41.91 E-value=57 Score=26.11 Aligned_cols=65 Identities=17% Similarity=0.231 Sum_probs=49.6
Q ss_pred EEEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEE-EEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026049 26 SCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVI-VTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (244)
Q Consensus 26 ~~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~-Itlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (244)
.-..-|.|.|+.++.|-.-+..-+.|.++ ..|.|+|+..+.|. +.+... ..--+|.||-+....+
T Consensus 29 ~fe~YlVNdSNy~l~f~y~~~~~~~w~l~-~~G~iePntk~~ieef~~~el-------n~~~~~~vQ~layK~~ 94 (147)
T 2huh_A 29 PFEAYLVNDSNYYLYYTYLSAEGKAWNNR-SHGLVEPNTKLLLEEFTKDVL-------NEMERVAVQLIAFKDG 94 (147)
T ss_dssp CEEEEEEECSSSEEEEEEEEEETTEEEEE-EEEEECTTEEEEEEEECGGGG-------GGCSSEEEEEEEECSS
T ss_pred ceEEEEEeCCCcEEEEEEEEeeCCeEEEE-EeeEECCCcEEEEEeeChhHh-------cCCceEEEEEEEEcCC
Confidence 45778999999999999988777777776 78999999988874 333322 2456788998887764
No 115
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=41.89 E-value=56 Score=19.65 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
.++...+..|..++..+..|..+||.-|
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4677788888889999988988888643
No 116
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=41.47 E-value=45 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNK 202 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~ 202 (244)
++...+.|+.|.++..+++++...
T Consensus 36 l~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 36 LDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333344555555555555444433
No 117
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.21 E-value=52 Score=20.85 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..|+.|..++..||+.|+....+-+
T Consensus 6 aqlenevaslenenetlkkknlhkk 30 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKK 30 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHH
Confidence 3445555555555555555444433
No 118
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.75 E-value=41 Score=20.26 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
..+...+..|-.|...|..|..+|+.-|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4677788899999999999999988643
No 119
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.75 E-value=43 Score=28.28 Aligned_cols=36 Identities=19% Similarity=-0.034 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
+.++...-.+|-++...+..|+..|++|+..||.+.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777788888888888887653
No 120
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=39.40 E-value=61 Score=23.66 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.++...|..++.|+..+.-|...|+.++..+|.
T Consensus 59 ~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 59 RELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555553
No 121
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=39.22 E-value=50 Score=24.81 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=29.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..+...+.+.+..|.++.+.|-+....+++.|..|.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667888899999988888888888888888876
No 122
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.84 E-value=65 Score=24.31 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026049 190 TEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 190 ~~E~~~~~~en~~Lqqel~~l~ 211 (244)
++....+.++++....+++++|
T Consensus 43 eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 43 EEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444
No 123
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.37 E-value=64 Score=19.37 Aligned_cols=29 Identities=3% Similarity=0.013 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+..+...+..|-.+...|..|..+||.-|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34677788999999999999999998654
No 124
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=37.35 E-value=31 Score=29.58 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 174 EPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 174 ~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.++++...+.+.+.+.++|+++++.+..+-|+.+..+|.++
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999999998888653
No 125
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.25 E-value=46 Score=30.60 Aligned_cols=8 Identities=0% Similarity=0.027 Sum_probs=5.0
Q ss_pred hcCCCCCc
Q 026049 214 HSSFKRPF 221 (244)
Q Consensus 214 ~~~~~~~~ 221 (244)
..|.||+.
T Consensus 64 ~vRvRP~~ 71 (403)
T 4etp_A 64 YLRIRPAL 71 (403)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 46677764
No 126
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.85 E-value=60 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNK 202 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~ 202 (244)
|....|++|.++...|.+|.-+
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555555554433
No 127
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=36.80 E-value=70 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
...|..|..|+..+.++.+.+++++..+
T Consensus 5 ~k~i~~l~~E~eel~~klk~~~ee~~~~ 32 (71)
T 1s1c_X 5 TKDIEILRRENEELTEKMKKAEEEYKLE 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 128
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.71 E-value=71 Score=23.45 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
=.++.+.+..|..|+..+..+...++.|+..|..
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~ 53 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQ 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888888888888888888888887753
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.51 E-value=73 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNK 202 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~ 202 (244)
|+++....|++..+.+.++|..
T Consensus 34 ELIqEYl~LE~~~s~le~e~~r 55 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNR 55 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 130
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=35.23 E-value=75 Score=19.20 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
...+...+..|-.+...|..|..+||.-|
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45677888999999999999999998754
No 131
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.87 E-value=31 Score=26.35 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLCHSSF 217 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~ 217 (244)
++|..|+.....+..+|.+|.-|+..++.....|
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf 53 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555666666666655555555444333
No 132
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.86 E-value=65 Score=23.37 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++-..|..+.+|+..+.++|..|+.--.+.+
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q 72 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888888888888888886555443
No 133
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.76 E-value=49 Score=18.55 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 026049 197 IQINNKLQQELVRTYLC 213 (244)
Q Consensus 197 ~~en~~Lqqel~~l~~~ 213 (244)
-+|.+.||+.|..||+.
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555543
No 134
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=33.74 E-value=33 Score=29.53 Aligned_cols=14 Identities=14% Similarity=-0.057 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhh
Q 026049 200 NNKLQQELVRTYLC 213 (244)
Q Consensus 200 n~~Lqqel~~l~~~ 213 (244)
++.|++|..+||+.
T Consensus 45 ~~~l~~En~rLr~l 58 (255)
T 2j5u_A 45 VADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666655
No 135
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.52 E-value=41 Score=25.92 Aligned_cols=19 Identities=16% Similarity=-0.083 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 026049 195 SVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 195 ~~~~en~~Lqqel~~l~~~ 213 (244)
.+..+|..|+.|+..|++.
T Consensus 65 ~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 65 QAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444578888888888754
No 136
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.29 E-value=76 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
.++...++.|.+|...+++.+..|+..+-.|
T Consensus 31 ~e~~~~~~~Lq~El~~lr~~~~~l~~~iReL 61 (111)
T 2v66_B 31 AQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678889999999988888877654433
No 137
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.21 E-value=47 Score=27.63 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026049 191 EEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 191 ~E~~~~~~en~~Lqqel~~l~ 211 (244)
.....+..+|.+||+|.++|.
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544
No 138
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=33.13 E-value=17 Score=31.45 Aligned_cols=36 Identities=8% Similarity=-0.098 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+.|..+....+.++..++.++|+.++++|+.|++.
T Consensus 142 ~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 142 TYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777644
No 139
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A
Probab=32.54 E-value=81 Score=25.02 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCeE-EEEeeecCCCcEEEe--CCCee-eCCCCe------EEEEEEeccCCCCCCCCCCCceEEEEEEEc
Q 026049 27 CSLQLSNKTDNYV-AFKVKTTNPKKYCVR--PNTGV-VLPRST------CDVIVTMQSQKEAPPDMQCKDKFLLQGVVA 95 (244)
Q Consensus 27 ~~L~L~N~s~~~V-AFKVKTT~P~~Y~Vr--P~~Gi-I~P~~s------~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v 95 (244)
-.++.+|.+..+| -|.+.--.|+-|.++ |.+|- |.|+.. ++=.+.+..... ...+=|+.|.+..-
T Consensus 57 i~~~~~N~s~~~is~f~fQaAVPK~~kLqL~ppSg~~L~p~~~~~~~~~ItQ~m~v~n~~~----~~l~LR~klsY~~~ 131 (153)
T 1p4u_A 57 VVVSMLNMAPLPVKSIVLQAAAPKSMKVKLQPPSGTELSPFSPIQPPAAITQVMLLANPLK----EKVRLRYKLTFALG 131 (153)
T ss_dssp EEEEEEECSSSCBEEEEEEEECBTTSEEEECCCSCSCBCCCBTTBCCCEEEEEEEEECTTC----CCCCEEEEEEEEET
T ss_pred EEEEEEeCCCCccccEEEEEEcCcccEEEeeCCCCCccCCCCcCCCCCCEEEEEEEeCCCC----CCEEEEEEEEEEEC
Confidence 3667789877655 677777788877665 66664 667543 333333322211 23556666666553
No 140
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.41 E-value=25 Score=27.24 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=29.0
Q ss_pred eeEEEEEEEcCCCCeE-EEEeeecCCCcEEE--eCCCe-eeCCCCe
Q 026049 24 QISCSLQLSNKTDNYV-AFKVKTTNPKKYCV--RPNTG-VVLPRST 65 (244)
Q Consensus 24 ~~~~~L~L~N~s~~~V-AFKVKTT~P~~Y~V--rP~~G-iI~P~~s 65 (244)
...-.++.+|.+..+| -|.+.--.|+-|.+ .|.+| .|.|+..
T Consensus 39 ~~~i~~~~~N~s~~~it~f~fQaAVPK~~kLqL~p~Sg~~l~p~~~ 84 (131)
T 2e9g_A 39 LLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGG 84 (131)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEECCTTSCCEECCCSCSEECTTTC
T ss_pred eEEEEEEEEECCCCccccEEEEEEcCcccEEEeeCCCCCCcCCCCC
Confidence 3556778899887655 67777777886654 57667 4778544
No 141
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.19 E-value=66 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 186 ISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 186 i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+.....|...++...+.|+-||+.||
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445666667777777777777765
No 142
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=32.03 E-value=53 Score=23.41 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...+.-|++.+..|.+.|.+|.+|...||..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999854
No 143
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.55 E-value=1e+02 Score=19.54 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.++.+....|+.-.+.|.+...-|+.|...||+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555555555555555555566666555543
No 144
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=31.11 E-value=56 Score=23.70 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
+..++.||..|..|...+.++..++++
T Consensus 34 L~ksvdYI~~Lq~e~~r~~e~e~r~k~ 60 (83)
T 4ath_A 34 LKASVDYIRKLQREQQRAKDLENRQKK 60 (83)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999998888877777665544
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.71 E-value=38 Score=29.48 Aligned_cols=43 Identities=12% Similarity=0.118 Sum_probs=32.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSSFK 218 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~~~ 218 (244)
..++.++...+..|++....|.++.+.+++|+..||..+..+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346677778888877777788888889999999988765554
No 146
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=30.62 E-value=1.9e+02 Score=27.76 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.7
Q ss_pred eeEEEEEEEcCCCCeEEEEeeecCCCc--EEEeCCCeee-CCCCeEEEEEEecc
Q 026049 24 QISCSLQLSNKTDNYVAFKVKTTNPKK--YCVRPNTGVV-LPRSTCDVIVTMQS 74 (244)
Q Consensus 24 ~~~~~L~L~N~s~~~VAFKVKTT~P~~--Y~VrP~~GiI-~P~~s~~V~Itlq~ 74 (244)
..+-.-+++|..+..-.|+++.+.|.. -.|.|..=.+ ..+++..++|++..
T Consensus 538 ~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~ 591 (621)
T 3vta_A 538 NQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 591 (621)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEe
Confidence 344556899999999999999999875 4567877655 46788888888754
No 147
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=30.35 E-value=1.4e+02 Score=26.69 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCeEEEEeeecCCCcEEEeCCCeeeCCCCeEEEEEEeccCCCCCCCCCCCceEEEEEEEcCCC
Q 026049 27 CSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG 98 (244)
Q Consensus 27 ~~L~L~N~s~~~VAFKVKTT~P~~Y~VrP~~GiI~P~~s~~V~Itlq~~~e~p~d~~~kDKFlVqs~~v~~~ 98 (244)
-.+.|+|.++- -|.++-+++..|.+.++.=-|+|+++.++.|.+-...+ ...=+|-|.-..+.++
T Consensus 270 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 334 (343)
T 3e38_A 270 VTLSITNVTDL--VLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIK-----GGDVNFEVTNFIVAPD 334 (343)
T ss_dssp EEEEEEECSSS--CEEEEECSCCTTEECCSEEEECTTEEEEEEEEECTTCC-----CCEEEEEEEEEEEETT
T ss_pred eEEEeecCCCc--ceeeeccccccccccCceEEecCCCeEEEEEecccccc-----ceEEEEEeeeeeecCC
Confidence 68899999885 56777789999999999999999999999998753321 2445676665554443
No 148
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.96 E-value=78 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..|..|+.+.+....+++.||.+|+.++..
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777888888888888888887754
No 149
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=29.67 E-value=1e+02 Score=21.70 Aligned_cols=9 Identities=0% Similarity=-0.012 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 026049 182 ARALISKLT 190 (244)
Q Consensus 182 ~~~~i~~L~ 190 (244)
+...+.++.
T Consensus 16 l~~klk~~~ 24 (71)
T 1uix_A 16 LNNKLKEAQ 24 (71)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 150
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=29.58 E-value=39 Score=30.83 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+.....|..|+.|...+.++.+.++.|..++|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 438 KAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334445666766776666666666667776663
No 151
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.42 E-value=80 Score=26.00 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
..++...+.+|+++.....+++..++++|++.
T Consensus 137 V~kLqkeiD~LEDeL~~eKek~k~i~~eLDqT 168 (175)
T 3mud_A 137 TAKNEKSIDDLEEKVAHAKEENLNMHQMLDQT 168 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677777777777777788888887754
No 152
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.33 E-value=53 Score=25.77 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026049 201 NKLQQEL 207 (244)
Q Consensus 201 ~~Lqqel 207 (244)
.+|++++
T Consensus 113 ~~l~~~~ 119 (138)
T 3hnw_A 113 KELKSEI 119 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 153
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=29.25 E-value=1.2e+02 Score=19.76 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
..++...|-.|+++...-..++..++++|+..
T Consensus 14 V~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 14 VARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45666677777777777777788888888764
No 154
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.24 E-value=53 Score=18.56 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.|+=|.+++.|....|+|.+..|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666666554
No 155
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=29.04 E-value=94 Score=18.46 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.|....+|.....+|.+.+++|...++-.
T Consensus 3 kiaaikeeqaaieeeiqaikeeiaaikyl 31 (36)
T 1bb1_B 3 KIAAIKEEQAAIEEEIQAIKEEIAAIKYL 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888899988877643
No 156
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=28.31 E-value=94 Score=23.73 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCeEE---EEeeecCCC---cEEEeCCCeeeCCCCeEEE
Q 026049 27 CSLQLSNKTDNYVA---FKVKTTNPK---KYCVRPNTGVVLPRSTCDV 68 (244)
Q Consensus 27 ~~L~L~N~s~~~VA---FKVKTT~P~---~Y~VrP~~GiI~P~~s~~V 68 (244)
..++|.|.+++.+. |+++-...+ .|.. |..=+|.||.+++|
T Consensus 25 ~fV~L~N~s~~~~~L~gW~l~r~v~~~~~~y~F-p~~~~L~pg~~vtV 71 (123)
T 3hn9_A 25 KFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKY-TSRYVLKAGQTVTI 71 (123)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTEEEEEEC-CTTCEECTTCEEEE
T ss_pred CEEEEEECCCCceecCCcEEEEEeCCCceEEEc-CCCcEECCCCEEEE
Confidence 47899999887764 778755443 3544 55558999998765
No 157
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=28.19 E-value=1e+02 Score=18.61 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+.++...+..|-.++..+..|..+||.-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45677788888888999989988888754
No 158
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=27.36 E-value=53 Score=22.21 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=16.8
Q ss_pred EEEEEcCCCCeEEEEeeecCC
Q 026049 28 SLQLSNKTDNYVAFKVKTTNP 48 (244)
Q Consensus 28 ~L~L~N~s~~~VAFKVKTT~P 48 (244)
.|++...+.+.+.|||+.|.|
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~ 23 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTP 23 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEECCCCh
Confidence 577777778889999988765
No 159
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.36 E-value=93 Score=23.71 Aligned_cols=29 Identities=17% Similarity=-0.041 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
.+.+.+.+.+.|...|..++..||+.|+.
T Consensus 8 ~~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 8 ALLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666655543
No 160
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.78 E-value=86 Score=22.54 Aligned_cols=34 Identities=12% Similarity=0.051 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+....+++...|..|+.....+..+..+|++...
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445556666666666665555555555555433
No 161
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.68 E-value=1.2e+02 Score=21.86 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
.+....+..+...+...|+.|..|+..|+..
T Consensus 37 r~~ni~~eskL~eae~rn~eL~~e~~~l~~~ 67 (81)
T 1wt6_A 37 RTDNQNFASQLREAEARNRDLEAHVRQLQER 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556666677777777766643
No 162
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=26.62 E-value=77 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 188 KLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 188 ~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+|..++..|..+.+.|+.+|..|+
T Consensus 4 ~L~~~~~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 4 QLLSRRLKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554
No 163
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.52 E-value=62 Score=24.37 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 189 LTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 189 L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
|.++.+.|.++.+.|+++|..|+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556666777777888888877754
No 164
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=26.51 E-value=67 Score=26.64 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 185 LISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
.+.-+.+....|..+|.+||+|.++|++
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666667777777777777777764
No 165
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.49 E-value=1.1e+02 Score=21.36 Aligned_cols=27 Identities=22% Similarity=0.053 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 187 SKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 187 ~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..-.+=+..|.++++.|+++++.|+++
T Consensus 53 ~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 53 DKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455788899999999999998864
No 166
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=26.45 E-value=1.4e+02 Score=19.54 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
++.++...+..|.+.-..|.+-.+.-|+||..|+..+
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667776666667777777777777777543
No 167
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.39 E-value=6.5 Score=28.12 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 189 LTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 189 L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
..+|...|.+||..|+.|++.|++.
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888777754
No 168
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.37 E-value=1.5e+02 Score=21.99 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 026049 198 QINNKLQQELVRT 210 (244)
Q Consensus 198 ~en~~Lqqel~~l 210 (244)
+++.++.+||+-|
T Consensus 47 ~~~~~ie~ElEeL 59 (97)
T 2eqb_B 47 EEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555544
No 169
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.24 E-value=95 Score=28.58 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=7.6
Q ss_pred hcCCCCCchhH
Q 026049 214 HSSFKRPFSPE 224 (244)
Q Consensus 214 ~~~~~~~~~~~ 224 (244)
..|.||+..-+
T Consensus 64 ~vRvRP~~~~E 74 (412)
T 3u06_A 64 FCRIRPPLESE 74 (412)
T ss_dssp EEEECCCCGGG
T ss_pred EEEcCCCCchh
Confidence 57788876554
No 170
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=26.24 E-value=95 Score=27.44 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026049 192 EKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 192 E~~~~~~en~~Lqqel~~l 210 (244)
|++++.++++.|++|+..|
T Consensus 186 eie~L~~~~~~L~eEi~~L 204 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARL 204 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 171
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=26.20 E-value=1.3e+02 Score=19.17 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 182 ARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 182 ~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
+.+.+.||++..+.-.-+--.||.+|.+|-
T Consensus 9 lasqvvkltkql~eqt~~rv~lq~qlq~ll 38 (48)
T 2kes_A 9 LASQVVKLTKQLKEQTVERVTLQNQLQQFL 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777666655555556666666654
No 172
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=26.12 E-value=1.3e+02 Score=20.81 Aligned_cols=20 Identities=10% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 026049 194 NSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 194 ~~~~~en~~Lqqel~~l~~~ 213 (244)
+.|.++...|++||..||-+
T Consensus 19 eEL~~~L~elk~ELf~LR~q 38 (72)
T 3v2d_2 19 VELEKLVREKKRELMELRFQ 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888744
No 173
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.89 E-value=71 Score=20.82 Aligned_cols=33 Identities=15% Similarity=0.041 Sum_probs=25.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 175 PQDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 175 ~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
++..++.+++.|..|++-=+...||+.+|+.-|
T Consensus 9 LKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 9 LKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 355567788888888888888888888887543
No 174
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.45 E-value=1.1e+02 Score=25.73 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
...+.+.+..|+++...+..+..+++.|.+.+|+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888888888865
No 175
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.94 E-value=73 Score=23.20 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
.+.+.|..|.+++..+.++...++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666555555543
No 176
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.08 E-value=38 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++...|..++.|+..+.-|...+|..++.+|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk 34 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLR 34 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555556665555555555555555544444
No 177
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=23.96 E-value=1.7e+02 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCHSS 216 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~ 216 (244)
..++...|+.|.+...++.+=.-+-|..|+.|--..+|
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraLD~L~a~~GG 41 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLKEGG 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56778889999999999999888999999998776666
No 178
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.74 E-value=73 Score=21.76 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
-..+.|..|.+=.+.+.+|...||.++..|.
T Consensus 24 aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 24 TSEAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 3444566666666666666666666655543
No 179
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=23.62 E-value=1.1e+02 Score=17.17 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026049 189 LTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 189 L~~E~~~~~~en~~Lqqel~ 208 (244)
|..|.-.+..|...|+.|..
T Consensus 5 lkdevgelkgevralkdevk 24 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHh
Confidence 33444444444444444443
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.39 E-value=81 Score=29.11 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYL 212 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~ 212 (244)
..+..+.+.+|+.+++.+.++...+++|+.+|+.
T Consensus 34 ~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 34 IRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344556778888888888888899999988873
No 181
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=23.10 E-value=1.5e+02 Score=20.47 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 026049 195 SVIQINNKLQQELVRTYL 212 (244)
Q Consensus 195 ~~~~en~~Lqqel~~l~~ 212 (244)
.|+++..+|..||+.+.+
T Consensus 36 KL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 36 KNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555443
No 182
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=22.84 E-value=73 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCeEEEEeeecCC
Q 026049 27 CSLQLSNKTDNYVAFKVKTTNP 48 (244)
Q Consensus 27 ~~L~L~N~s~~~VAFKVKTT~P 48 (244)
-.|++...+.+.|.|||+.|.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~ 27 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTP 27 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEECCCCh
Confidence 4678888778889999988876
No 183
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=22.71 E-value=1.5e+02 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026049 184 ALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqq 205 (244)
+.+..+.++.+..+.+..+++.
T Consensus 33 ~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 33 EKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334333333333
No 184
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=22.67 E-value=1e+02 Score=27.54 Aligned_cols=42 Identities=17% Similarity=-0.011 Sum_probs=29.3
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 172 QYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 172 ~~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
+..++.+...+.+.|..|++....+..+.++|++.+..|...
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667788888888888888888888888777654
No 185
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.57 E-value=1.3e+02 Score=25.02 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
.-....|..|+.+...|.+||++|++|-
T Consensus 157 ~~~L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 157 CYCLDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456688999999999999999999873
No 186
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.37 E-value=1.1e+02 Score=23.18 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELV 208 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~ 208 (244)
+....++...|..|+-|...+..++..|...|.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444566677777777777777666666655444
No 187
>1ifr_A Lamin A/C; immunoglobulin, immune system; 1.40A {Homo sapiens} SCOP: b.1.16.1 PDB: 1ivt_A 3gef_A
Probab=22.32 E-value=1.2e+02 Score=23.15 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCeE---EEEeeecC---CCcEEEeCCCeeeCCCCeEEE
Q 026049 27 CSLQLSNKTDNYV---AFKVKTTN---PKKYCVRPNTGVVLPRSTCDV 68 (244)
Q Consensus 27 ~~L~L~N~s~~~V---AFKVKTT~---P~~Y~VrP~~GiI~P~~s~~V 68 (244)
..++|.|.+++.+ .|+++-.. +..-+.-|..=+|.||.+++|
T Consensus 19 ~fV~l~N~s~~~~~L~gW~l~r~v~~~~~~~y~Fp~~~~L~pg~~vtI 66 (121)
T 1ifr_A 19 KFVRLRNKSNEDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTI 66 (121)
T ss_dssp SEEEEEECSSSCEECTTCEEEEEETTSCCEEEECCSSCEECTTCEEEE
T ss_pred CEEEEEeCCCCccccCCCEEEEEcCCCccEEEEeCCCcEECCCCEEEE
Confidence 4688999888766 36776552 222333566678899998653
No 188
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.08 E-value=1.5e+02 Score=21.49 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=21.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
...++...+.+|..++..+..+...+++.+..|.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666676666676666666666666654
No 189
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.06 E-value=18 Score=28.42 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=0.0
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 171 EQYEPQDKSTEARALISKLTEEKNSVIQINNKLQQELVR 209 (244)
Q Consensus 171 ~~~~~~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~ 209 (244)
++.+.+.++.++...-..|.+.-..+.+++..+..|++.
T Consensus 10 ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee 48 (130)
T 3cl3_D 10 ELQESQSRLEAATKECQALEGRARAASEQARQLESEREA 48 (130)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444444444444444444444444444444444443
No 190
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.04 E-value=1.8e+02 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 184 ALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 184 ~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
..+..++++...+..+...|+.++..|+
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~ 98 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRID 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 191
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=22.00 E-value=1.6e+02 Score=19.31 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 180 TEARALISKLTEEKNSVIQINNKLQQE 206 (244)
Q Consensus 180 ~e~~~~i~~L~~E~~~~~~en~~Lqqe 206 (244)
-++...|.+++.|...+++....+++.
T Consensus 11 i~Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 11 IAAQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777766666554
No 192
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.82 E-value=80 Score=23.05 Aligned_cols=33 Identities=9% Similarity=0.149 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 178 KSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 178 ~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+...+...|.+|++....+..+...|+.+|..+
T Consensus 78 ~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 78 KIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666655544
No 193
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.80 E-value=95 Score=22.19 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQELVRT 210 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l 210 (244)
+..|--....|-.|+++......++..++++|++.
T Consensus 36 ~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDqT 70 (77)
T 3mtu_E 36 RVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQT 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455566688889888888999999999998764
No 194
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.69 E-value=1.4e+02 Score=22.82 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=17.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 176 QDKSTEARALISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 176 ~~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel 207 (244)
+....++...|..|+-|...+..++..|...|
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455666666666666666666555555443
No 195
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=21.35 E-value=1.6e+02 Score=20.48 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026049 177 DKSTEARALISKLTEEKNSVIQINNKLQQELVRTY 211 (244)
Q Consensus 177 ~~~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~ 211 (244)
.++.++.....++.+|..++.+.++.|..+|+..-
T Consensus 27 ~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777778888888888888777654
No 196
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.15 E-value=66 Score=24.54 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 026049 195 SVIQINNKLQQELVRTYLCHS 215 (244)
Q Consensus 195 ~~~~en~~Lqqel~~l~~~~~ 215 (244)
.+.++...|+++|..|.++..
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 455556667777777766544
No 197
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.92 E-value=1.7e+02 Score=19.35 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 026049 181 EARALISKLTEEKNSVIQINNKLQQELVRTYLCHSS 216 (244)
Q Consensus 181 e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~~~ 216 (244)
++...|+.|.+...++.+=.-+-|..|+.|--..+|
T Consensus 4 ~l~~sl~~l~~ql~sla~vvlQNRraLDlL~a~~GG 39 (53)
T 1y4m_A 4 TMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGG 39 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456678899999999999888889999998876666
No 198
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=20.77 E-value=93 Score=23.17 Aligned_cols=27 Identities=7% Similarity=0.101 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQ 205 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqq 205 (244)
...+.+....|++|...+++|+++||+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777777777777777775
No 199
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=20.77 E-value=52 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 026049 190 TEEKNSVIQINNKLQQELVRTYLC 213 (244)
Q Consensus 190 ~~E~~~~~~en~~Lqqel~~l~~~ 213 (244)
-.+...+.||.+.|-++++.|+.+
T Consensus 104 laqLe~ls~qL~~ls~~v~~L~~q 127 (140)
T 3iyn_Q 104 LAQLDSLTRELNVVSQQLLDLRQQ 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555543
No 200
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.58 E-value=84 Score=22.89 Aligned_cols=32 Identities=6% Similarity=-0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 183 RALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 183 ~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.++|..|+.....+..++.+|.-|++.|....
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777766543
No 201
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=20.55 E-value=1.1e+02 Score=19.98 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026049 185 LISKLTEEKNSVIQINNKLQQEL 207 (244)
Q Consensus 185 ~i~~L~~E~~~~~~en~~Lqqel 207 (244)
++..|+++...|.+++..|+..|
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666665543
No 202
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=20.46 E-value=85 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026049 179 STEARALISKLTEEKNSVIQI 199 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~e 199 (244)
+.++..||..|.++...+.++
T Consensus 69 L~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 69 LKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788999888887777655
No 203
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.19 E-value=90 Score=22.07 Aligned_cols=36 Identities=6% Similarity=-0.060 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 026049 179 STEARALISKLTEEKNSVIQINNKLQQELVRTYLCH 214 (244)
Q Consensus 179 ~~e~~~~i~~L~~E~~~~~~en~~Lqqel~~l~~~~ 214 (244)
.+=....|..|.+..-.--++..+|+.++..|+...
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555555555555555666666666666543
Done!