BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026051
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 452 bits (1163), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/243 (90%), Positives = 230/243 (94%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 60
MD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAA
Sbjct: 113 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAA 172
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
EVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQV
Sbjct: 173 EVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQV 232
Query: 121 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGV 180
KP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV
Sbjct: 233 KPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV 292
Query: 181 IECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 240
IECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVS
Sbjct: 293 IECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVS 352
Query: 241 FVR 243
F+R
Sbjct: 353 FIR 355
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/243 (90%), Positives = 230/243 (94%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 60
MD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAA
Sbjct: 77 MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAA 136
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
EVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQV
Sbjct: 137 EVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQV 196
Query: 121 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGV 180
KP S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGV
Sbjct: 197 KPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV 256
Query: 181 IECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 240
IECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVS
Sbjct: 257 IECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVS 316
Query: 241 FVR 243
F+R
Sbjct: 317 FIR 319
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 174/242 (71%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A++ +ISNPVNST+PI AE
Sbjct: 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAE 129
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
VFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI+PL+SQ
Sbjct: 130 VFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCT 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + + + G GV+
Sbjct: 190 PKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
EC++V S T+ P+F++ + LG+ GIE+ +G ++ +E + +A EL SI+KG F
Sbjct: 250 ECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 309
Query: 242 VR 243
V+
Sbjct: 310 VK 311
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/242 (55%), Positives = 175/242 (72%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP+A++ +I+NPVNST+PI AE
Sbjct: 98 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAE 157
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
VFKK G Y+P ++ GVT LD+VRANTFVAE+ GLDP V+VPV+GGHAG TI+PL+SQ
Sbjct: 158 VFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCT 217
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + + + G GV+
Sbjct: 218 PKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVV 277
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
EC++V S TE +F++ + LG+ GIE+ +G ++ +E + A EL SI+KG F
Sbjct: 278 ECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDF 337
Query: 242 VR 243
V+
Sbjct: 338 VK 339
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 273 bits (697), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 139/243 (57%), Positives = 171/243 (70%), Gaps = 1/243 (0%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NPVN+TV IAAE
Sbjct: 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE 130
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
V KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GVTILPLLSQV
Sbjct: 131 VLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV- 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F + +R L+G+ GV+
Sbjct: 190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE L I G F
Sbjct: 250 ECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEF 309
Query: 242 VRK 244
V K
Sbjct: 310 VNK 312
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 273 bits (697), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 139/243 (57%), Positives = 171/243 (70%), Gaps = 1/243 (0%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NPVN+TV IAAE
Sbjct: 71 DVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE 130
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
V KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GVTILPLLSQV
Sbjct: 131 VLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV- 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F + +R L+G+ GV+
Sbjct: 190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE L I G F
Sbjct: 250 ECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEF 309
Query: 242 VRK 244
V K
Sbjct: 310 VNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 268 bits (686), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 170/243 (69%), Gaps = 1/243 (0%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NPVN+TV IAAE
Sbjct: 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE 130
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
V KK G YD +L GVT LD++ +NTFVAE+ G P EV+VPV+GGH+GVTILPLLSQV
Sbjct: 131 VLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV- 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F + +R L+G+ GV+
Sbjct: 190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE L I G F
Sbjct: 250 ECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEF 309
Query: 242 VRK 244
V K
Sbjct: 310 VNK 312
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 262 bits (669), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/242 (57%), Positives = 170/242 (70%), Gaps = 2/242 (0%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AGV RKPG R DLFN+NAGIVK+L E IA CP A + +I+NPVN+TVPIAAE
Sbjct: 74 DVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPIAAE 133
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
V KK G YD ++L GVT LDV+R+ TFVAE+ G DP EV VPV+GGH+GVTILPLLSQV+
Sbjct: 134 VLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLLSQVE 193
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
+ EI LT RIQN GTEVVEAK G GSATLS AA +F A ++ L+G+ VI
Sbjct: 194 -GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALVKALQGEE-VI 251
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
E AYV FFA V+LG+ G+EEI G L+++E+A L+ + L IQ GV F
Sbjct: 252 EYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETLNSDIQIGVDF 311
Query: 242 VR 243
V+
Sbjct: 312 VK 313
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ +A
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 62 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 119
+ + G PK R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 120 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 169
P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 170 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
C GL G G+ + F V+LGR G+E+IY + L++ + L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 225 EKAKK 229
+K+ K
Sbjct: 292 QKSAK 296
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 131/245 (53%), Gaps = 36/245 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ +A
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 62 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 119
+ + G PK R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKY 184
Query: 120 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 169
P L P E ID L +R +NGG E+VE GSA + A + + ++
Sbjct: 185 TTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDR 243
Query: 170 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
C GL G G+ + F V+LGR G+E+IY + L++ + L
Sbjct: 244 KRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLL 291
Query: 225 EKAKK 229
+K+ K
Sbjct: 292 QKSAK 296
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 20/235 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +++NPV++ +
Sbjct: 80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
VFK+ G + +R++G + +LD R TF+A+ L L +++ V+GGH G ++PL+
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 121 K----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 175
P +L P E ++ + +R + GG E+V G GSA + A + + +A L+ R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 176 G---DAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 227
+E Y S + + V LG GIE+I L L + E+ L+++
Sbjct: 254 RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD-EKEALDRS 303
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 33/242 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVPRKPG +RDDL IN + +T+ EGI CP A V I+NP++ I
Sbjct: 75 DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLD----IXVN 130
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
+K +++G +LD R TF+A+ L + ++V V GGH G T +PL
Sbjct: 131 XLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH-GDTXVPLTKXS 189
Query: 117 ------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
L Q+ L +D + R ++GG E+V A GSA + A A + A++
Sbjct: 190 NVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAPAAAGIQXAESF 248
Query: 171 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230
L+ + ++ C A+KV+ G G++E +G E G+ + E
Sbjct: 249 LKDKK---XILPC-------------AAKVKAGXYGLDEDLFVGVPTEISANGVRPIEVE 292
Query: 231 LA 232
++
Sbjct: 293 IS 294
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFS 186
Query: 117 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 174
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 175 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 233 GSI 235
++
Sbjct: 301 ATL 303
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 36/245 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV+I AG+PRKPGMTR+DL ++NAGIV+ + I + I+ ++SNP++ +A
Sbjct: 71 DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA-- 128
Query: 62 VFKKVGTYDPK-RLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ 119
++K G PK R++G+ +LD R +F+A LG+ ++V V+GGH G ++P++
Sbjct: 129 -WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGH-GDAMVPVVKY 184
Query: 120 VK----PSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA----- 169
P L E I L +R + GG E+V GSA S A + + ++
Sbjct: 185 TTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDR 243
Query: 170 -----CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
C L G G+ + F V+LG+ G+E IY + L++ + L
Sbjct: 244 KRVLTCAVSLDGQYGI-----------DGTFVGVPVKLGKNGVEHIYEI-KLDQSDLDLL 291
Query: 225 EKAKK 229
+K+ K
Sbjct: 292 QKSAK 296
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
V + +R++G +LD R TF+A G+ ++V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGH-GDEMVPLPRFS 186
Query: 117 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 174
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 175 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 233 GSI 235
++
Sbjct: 301 ATL 303
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 117 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 174
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 175 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 233 GSI 235
++
Sbjct: 301 ATL 303
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP+++ +AAE
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 132 ----VSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 117 -LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADACLRGL 174
+S + S + P + + +R + GG E+V KT GSA + A A A+ +A L+
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLKT--GSAYYAPAAATAQMVEAVLKDK 244
Query: 175 RGDAGVIECAYVAST--VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
+ V AY+ + ++ +F V LG G+E+I L PLNE E A L + K +
Sbjct: 245 KRVMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVR 300
Query: 233 GSIQ 236
++
Sbjct: 301 ATLD 304
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/250 (30%), Positives = 124/250 (49%), Gaps = 27/250 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I+NP+++ V
Sbjct: 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMV----Y 139
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
FK+ ++ G++ +LD R ++ LG+ P +V VVGGH G ++PL S V
Sbjct: 140 YFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSV 198
Query: 121 K----------PSCSLTPTEIDYLTDRIQNGGTEVVE-AKTGAGSATLSMAYAAAKFADA 169
+T ++I+ + + GG E+VE KTG+ + AA
Sbjct: 199 TIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELLKTGS-----AFYAPAASAVAM 253
Query: 170 CLRGLRGDAGVIECAYVAS---TVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226
L+ V+ C+ + V L F V +G+ GIE++ + L++ E++ K
Sbjct: 254 AQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIVN-LSDDEKSLFSK 311
Query: 227 AKKELAGSIQ 236
+ + + +Q
Sbjct: 312 SVESIQNLVQ 321
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 37/252 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+NP+++ V A +
Sbjct: 77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV-WALQ 135
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI-------- 113
F + + + GV LD R F++E + +V V V+GGH +
Sbjct: 136 KFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLARYSTV 193
Query: 114 --LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 171
+PL VK + + ++D + R ++GG E+V GSA + A +A + A++ L
Sbjct: 194 AGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYAPAASAIQMAESYL 251
Query: 172 RG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 221
+ L G GV + TV +G G+E I + L++ E+
Sbjct: 252 KDKKRVLPVAAQLSGQYGVKDMYVGVPTV-----------IGANGVERIIEI-DLDKDEK 299
Query: 222 AGLEKAKKELAG 233
A +K+ +AG
Sbjct: 300 AQFDKSVASVAG 311
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+ +
Sbjct: 69 DVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTY 124
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVT 112
F K DP+++ G T+LD R T +A+ G PR V V V+G H +G
Sbjct: 125 FFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAM 184
Query: 113 I--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYA 162
I +PL + + ++ ++ + E++E K GA +++A A
Sbjct: 185 IGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK-GATHYAIALAVA 235
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 27/237 (11%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V +++NP++ V
Sbjct: 78 DVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV 137
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
+ F + + G+ +LD R F+A+ L + PR++ V+G H G +LP
Sbjct: 138 ----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLP 192
Query: 116 L----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
L L + +T ++ + +R + G E+V G GSA + A +A
Sbjct: 193 LARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAIT 251
Query: 166 FADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYE 220
A A L+ + V+ C+ L F +G GIE++ L +E +
Sbjct: 252 MAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIELELTHEEQ 305
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 27/237 (11%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VII AG+ + PG +R+DL NA I++ + +G+ K CP A V +++NP++ V
Sbjct: 78 DVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVIVVTNPLDCMV 137
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
+ F + + G+ +LD R F+A+ L + PR++ V+G H G +LP
Sbjct: 138 ----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGTH-GDHMLP 192
Query: 116 L----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
L L + +T ++ + +R + G E+V G GSA + A +A
Sbjct: 193 LARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSAYYAPALSAIT 251
Query: 166 FADACLRGLRGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYE 220
A A L+ + V+ C+ L F +G GIE++ L +E +
Sbjct: 252 MAQAF---LKDEKRVLPCSVYCQGEYGLHDMFIGLPAVIGGGGIEQVIELELTHEEQ 305
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 25/252 (9%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++ +A E
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ R++G+ +LD R +F+AE L + R+V ++GGH G T++PL
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 121 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG------L 174
P ID RI+ E+VE GAG + + +A +A L
Sbjct: 186 TVGGIPVPQLIDDA--RIE----EIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMTEAIL 239
Query: 175 RGDAGVIECAYVASTVTELP--FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
+ + ++ CA L F V+LG G+EE+ + L+ E+A L K A
Sbjct: 240 KDNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQL----KTSA 294
Query: 233 GSIQKGVSFVRK 244
G + + +++
Sbjct: 295 GHVHSNLDDLQR 306
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 31/240 (12%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +NPV++ +
Sbjct: 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYV--- 125
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI-LPLLSQ 119
++KK G + +R++G + +LD R ++++ LG+ + V+ V+G H +P LS
Sbjct: 126 MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVPRLSS 184
Query: 120 VKP---SCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRG 176
V ++ EI+ + N G ++ E + S Y A + ++
Sbjct: 185 VGGVPLEHLMSKEEIEEVVSETVNAGAKITELR------GYSSNYGPAAGLVLTVEAIKR 238
Query: 177 DAGVI---------ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 227
D+ I E Y V E+P +G++GIE I L PL E E+ ++A
Sbjct: 239 DSKRIYPYSLYLQGEYGY-NDIVAEVPAV-----IGKSGIERIIEL-PLTEDEKRKFDEA 291
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I K CP A + +++NPV+ V
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV 133
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 134 ----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 189
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V S ++ A A +
Sbjct: 190 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 245
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ L+ L+ + ++E Y S + F + V LG G+E++ L LN E+A
Sbjct: 246 MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKA 300
Query: 223 GLEKAKKE 230
++A E
Sbjct: 301 KFDEAIAE 308
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I K CP A + +++NPV+ V
Sbjct: 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV 132
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 133 ----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 188
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V S ++ A A +
Sbjct: 189 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 244
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ L+ L+ + ++E Y S + F + V LG G+E++ L LN E+A
Sbjct: 245 MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKA 299
Query: 223 GLEKAKKE 230
++A E
Sbjct: 300 KFDEAIAE 307
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I K CP A + +++NPV+ V
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV 133
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 134 ----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 189
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V S ++ A A +
Sbjct: 190 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 245
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ L+ L+ + ++E Y S + F + V LG G+E++ L LN E+A
Sbjct: 246 MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKA 300
Query: 223 GLEKAKKE 230
++A E
Sbjct: 301 KFDEAIAE 308
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 117/248 (47%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I K CP A + +++NPV+ V
Sbjct: 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV 132
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 133 ----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 188
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V S ++ A A +
Sbjct: 189 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 244
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ L+ L+ + ++E Y S + F + V LG G+E++ L LN E+A
Sbjct: 245 MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKA 299
Query: 223 GLEKAKKE 230
++A E
Sbjct: 300 KFDEAIAE 307
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++ +
Sbjct: 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVS 129
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++P S V
Sbjct: 130 HFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSV 188
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++ +
Sbjct: 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVS 129
Query: 62 VFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++P S V
Sbjct: 130 HFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSV 188
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 120 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 170 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 220 ERAGLEKAKKEL 231
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I CP A + +++NPV+
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVTNPVD--- 130
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
+ ++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 131 -VMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 189
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + + +T E+D + DR N E+V S ++ A A +
Sbjct: 190 KRYITVGGIPLQEFIN-NKKITDQELDAIFDRTINTALEIVNLH---ASPYVAPAAAIIE 245
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ +R LR + ++E Y + F + + +G G+E++ L LN E+
Sbjct: 246 MAESYIRDLRKVLICSTLLEGQYGHKDI----FAGTPLVIGGNGVEQVIEL-QLNADEKK 300
Query: 223 GLEKAKKE 230
++A E
Sbjct: 301 KFDEAVAE 308
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K+ + R++G T LD R +A+++ +D R V ++G H G T P+ S
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 120 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
VK + ++ + + ++N E+++ K G+ +A A A+ + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 170 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 250 ILNDENAVLPLSVYMDGQYGLNDI-----------YIGTPAVINRNGIQNILEI-PLTDH 297
Query: 220 ERAGLEKAKKEL 231
E ++K+ +L
Sbjct: 298 EEESMQKSASQL 309
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 32/248 (12%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG R DL +N I+ + I K CP A + +++NPV+ V
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMV 133
Query: 57 PIAAEVFKKVGTYDPKRLLGVT-MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 134 ----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 189
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V S ++ A A +
Sbjct: 190 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 245
Query: 166 FADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
A++ L+ L+ + ++E Y S + F + V LG G+E++ L LN E+A
Sbjct: 246 MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKA 300
Query: 223 GLEKAKKE 230
++A E
Sbjct: 301 KFDEAIAE 308
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P++PG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 77 DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K+ + R++G T LD R +AE++ +D R V ++G H G T P+ S
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 120 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 170 CLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
L + G G+ + + + + R GI+ I + PL ++
Sbjct: 249 ILNDENAVLPLSVYMDGQYGINDL-----------YIGTPAVINRNGIQNILEI-PLTDH 296
Query: 220 ERAGLEKAKKEL 231
E ++K+ +L
Sbjct: 297 EEESMQKSASQL 308
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 120/249 (48%), Gaps = 34/249 (13%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I CP A + +++NPV+ V
Sbjct: 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVTNPVDVMV 132
Query: 57 PIAAEVFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 114
+ +F+ G PK +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 133 QL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGNKMVL 187
Query: 115 ----------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 164
PL + + +T E++ + DR N E+V S ++ A A
Sbjct: 188 LKRYITVGGIPLQEFIN-NKKITDEEVEGIFDRTVNTALEIVNL---LASPYVAPAAAII 243
Query: 165 KFADACLRGLRGD---AGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 221
+ A++ L+ ++ + ++E Y S + F + + +G G+E++ L LN E+
Sbjct: 244 EMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTGVEQVIEL-QLNAEEK 298
Query: 222 AGLEKAKKE 230
++A E
Sbjct: 299 TKFDEAVAE 307
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 26/245 (10%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG RDDL +N I+ + I K CP A + +++NPV+
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD--- 130
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL- 114
+ ++ + +++G+ +LD R ++++ L + PR+V+ +VG H +L
Sbjct: 131 -VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLL 189
Query: 115 ---------PLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
PL + ++ E++ + DR N E+V A + A+
Sbjct: 190 KRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHAAPYVAPAAAIIEMAE 248
Query: 166 FADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 225
L+ + + ++E Y S + F + V LG G+E++ L LN E+A +
Sbjct: 249 SYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFD 303
Query: 226 KAKKE 230
+A E
Sbjct: 304 EAIAE 308
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII +GVPRK GM+R DL NA IV + IA+ C I +I+NPV+ + A
Sbjct: 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD-VMTYKAL 133
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
V K ++ ++ G+ T LD +R +A+ G+ EV ++G H G +++PLLS
Sbjct: 134 VDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSAT 189
Query: 120 ------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 152
++ ID + + ++ G +++ K G+
Sbjct: 190 SIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 111/250 (44%), Gaps = 33/250 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ AG RKPG TR DL N I K + + I K ++ ++SNPV+ I
Sbjct: 76 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ +K +++G T+LD +R ++E LG+D + V ++G H G + LPL S
Sbjct: 132 MIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCT 190
Query: 121 K------------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 168
P C+ T + + + ++ G +++ K G+ +A + +
Sbjct: 191 HIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GATYYGIAVSINTIVE 247
Query: 169 ACLRG---LRGDAGVIECAY-VASTVTELPFFASKVRLGRAGIEEI--YSLGPLNEYE-R 221
L+ +R VI Y + LP + G++E+ ++L P E R
Sbjct: 248 TLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVNS-----EGVQEVLQFNLTPEEEEALR 302
Query: 222 AGLEKAKKEL 231
E+ KK L
Sbjct: 303 FSAEQVKKVL 312
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 128
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 129 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 187
Query: 121 KPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ + + E + L +Q +V+E K G+ A A +A L D
Sbjct: 188 RVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH----D 240
Query: 178 AGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS 234
G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 241 TGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQ 299
Query: 235 IQK 237
K
Sbjct: 300 YDK 302
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 127
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 128 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 186
Query: 121 KPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ + + E + L +Q +V+E K G+ A A +A L D
Sbjct: 187 RVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH----D 239
Query: 178 AGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS 234
G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 240 TGEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQ 298
Query: 235 IQK 237
K
Sbjct: 299 YDK 301
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 127
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 128 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 186
Query: 121 KPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ + + E + L +Q +V+E K G+ A A +A L D
Sbjct: 187 RVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH----D 239
Query: 178 AGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS 234
G + A V E F VRLG G+EEI L++YE+ + A ++L+
Sbjct: 240 TGRVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQ 298
Query: 235 IQK 237
K
Sbjct: 299 YDK 301
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK + +++NP++ V
Sbjct: 78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMV 137
Query: 57 PIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 114
+ E + P ++ MLD R +VA+ L + PR+V V+G H G ++
Sbjct: 138 KVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMV 191
Query: 115 PLLSQV 120
PL+ +
Sbjct: 192 PLVRYI 197
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK + +++NP++ V
Sbjct: 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMV 139
Query: 57 PIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 114
+ E + P ++ MLD R +VA+ L + PR+V V+G H G ++
Sbjct: 140 KVMCE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMV 193
Query: 115 PLLSQV 120
PL+ +
Sbjct: 194 PLVRYI 199
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 121 ----KPSCSLTPT------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
+P +L +I+ + + ++ ++++AK G+ +A A+ +A
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 171 LRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYERAGL 224
R + S + E + V +G R GI + + PLN+ E++
Sbjct: 248 FRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKF 299
Query: 225 EKAKKEL 231
+ K L
Sbjct: 300 AHSAKTL 306
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 2 DIVIIPAGVPRKPG-----MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK + +++NP++ V
Sbjct: 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMV 139
Query: 57 PIAAEVFKKVGTYDPKRLLG--VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL 114
+ E + P ++ MLD R +VA+ L + PR+V V+G H G ++
Sbjct: 140 KVMXE-----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMV 193
Query: 115 PLLSQV 120
PL+ +
Sbjct: 194 PLVRYI 199
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 109/247 (44%), Gaps = 33/247 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 121 ----KPSCSLTPT------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
+P +L +I+ + + ++ ++++AK G+ +A A+ +A
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 171 LRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYERAGL 224
R + S + E + V +G R GI + + PLN+ E++
Sbjct: 248 FRNE-------DAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKF 299
Query: 225 EKAKKEL 231
+ K L
Sbjct: 300 AHSAKTL 306
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 73 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 128
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 129 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 187
Query: 121 KPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ + E + L +Q +V+E K G+ A A +A L D
Sbjct: 188 SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH----D 240
Query: 178 AGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS 234
G + A V E F V LG G+EEI L++YE+ + A ++L+
Sbjct: 241 TGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQ 299
Query: 235 IQK 237
K
Sbjct: 300 YDK 302
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 106/243 (43%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 127
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 128 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 186
Query: 121 KPSCS---LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ + E + L +Q +V+E K G+ A A +A L D
Sbjct: 187 SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILH----D 239
Query: 178 AGVIECAYV---ASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGS 234
G + A V E F V LG G+EEI L++YE+ + A ++L+
Sbjct: 240 TGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQ 298
Query: 235 IQK 237
K
Sbjct: 299 YDK 301
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 4 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 63
V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ + +V
Sbjct: 71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVA 126
Query: 64 KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-------- 114
++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 127 YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVG 186
Query: 115 --PLLSQVKP-SCSLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSMA 160
PLL + +L+P + + + ++ ++E K GAG A L A
Sbjct: 187 GVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRA 241
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 4 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 63
V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ + +V
Sbjct: 71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VXTQVA 126
Query: 64 KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-------- 114
++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 127 YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVG 186
Query: 115 --PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSMA 160
PLL + +L+P + + + ++ ++E K GAG A L A
Sbjct: 187 GVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRA 241
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTY 130
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K +R++G T LD R ++E G P+ V ++G H G T LP+ S
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-GDTELPVWSHA 189
Query: 120 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
V+ + + E+D + D ++N ++E K G+ +A + A+ A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITKA 246
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYER 221
L ST + + A V +G R GI I L LNE E+
Sbjct: 247 ILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELN-LNEKEK 296
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG G TR DL N I+K + G+ + P + +++NPV+ I V
Sbjct: 90 LVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG++P V+G H G + +P+ S V
Sbjct: 146 VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVN 204
Query: 122 PSC----SLTP--------TEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ SL P + ++ GG EV++ K G + ++ + A +
Sbjct: 205 VAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTSWAIGLSVTDLARS 261
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
L+ L+ V + E F + LG +GI + + E E GL K
Sbjct: 262 ILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEE--GLLKKSA 319
Query: 230 ELAGSIQKGVSF 241
+ ++QK +
Sbjct: 320 DTLWNMQKNLEL 331
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 4 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 63
V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ + +V
Sbjct: 71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVA 126
Query: 64 KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-------- 114
++ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 127 YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVG 186
Query: 115 --PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSMA 160
PLL + +L+P + + + ++ ++E K GAG A L A
Sbjct: 187 GVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRA 241
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 90 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G T LD R + E L L P +VG H G + +P+ S V
Sbjct: 146 AWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVN 204
Query: 122 PS----CSLTP---TEID-----YLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ L P TE D + + +G EV++ K G + ++ + A ++
Sbjct: 205 VAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVES 261
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ + V V + F + LG +G+ ++ + L E L+K+ +
Sbjct: 262 IIKNMHKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQKSAE 320
Query: 230 ELAGSIQKGVSF 241
L G +QK ++
Sbjct: 321 TLWG-VQKELTL 331
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 108/251 (43%), Gaps = 21/251 (8%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+V++ AG ++ G +R +L N I K + I K P I+ ++SNPV+ I V
Sbjct: 91 VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVD----ILTYV 146
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 113
K+ R++G T LD R + E LG+ P V+G H +GV +
Sbjct: 147 AWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNV 206
Query: 114 LPLLSQ-VKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
+ Q + P + D+ + + + EV++ K G + ++ +AA +
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 171 LRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230
L+ LR V V E F + LG +G+ ++ + L E L K+ +
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 231 LAGSIQKGVSF 241
L G +QK ++
Sbjct: 323 LWG-VQKDLTL 332
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ P V+G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGMN 204
Query: 122 PS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAGSATLSMAYAAAKFADACLR 172
+ SL D TD+ + EV E G + ++ + A A++ ++
Sbjct: 205 VAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMK 264
Query: 173 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
LR V + + F + LG+ GI ++ + L E A L+K+ L
Sbjct: 265 NLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV-TLTSEEEARLKKSADTLW 323
Query: 233 GSIQKGVSF 241
G IQK + F
Sbjct: 324 G-IQKELQF 331
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 17/249 (6%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ P V+G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGMN 204
Query: 122 PS-CSLTPTEIDYLTDRIQNGGTEV--------VEAKTGAGSATLSMAYAAAKFADACLR 172
+ SL D TD+ + EV E G + ++ + A A++ ++
Sbjct: 205 VAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMK 264
Query: 173 GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232
LR V + + F + LG+ GI ++ + L E A L+K+ L
Sbjct: 265 NLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV-TLTSEEEARLKKSADTLW 323
Query: 233 GSIQKGVSF 241
G IQK + F
Sbjct: 324 G-IQKELQF 331
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I V
Sbjct: 91 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYV 146
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 147 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVN 205
Query: 122 PSC----SLTP---TEIDY-----LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ SL P T+ D + ++ + EV++ K G + ++ + A A++
Sbjct: 206 VAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAES 262
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 263 IMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD 321
Query: 230 ELAGSIQKGVSF 241
L G IQK + F
Sbjct: 322 TLWG-IQKELQF 332
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVN 204
Query: 122 PSC----SLTP---TEIDY-----LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ SL P T+ D + ++ + EV++ K G + ++ + A A++
Sbjct: 205 VAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAES 261
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 262 IMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD 320
Query: 230 ELAGSIQKGVSF 241
L G IQK + F
Sbjct: 321 TLWG-IQKELQF 331
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 34/238 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTY 130
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K +R++G T LD R ++E G P+ V ++G H G T LP+ S
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHA 189
Query: 120 ----------VKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
V+ + + E+D + D ++N ++E K G+ +A + A+ A
Sbjct: 190 NVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITKA 246
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLG------RAGIEEIYSLGPLNEYER 221
L ST + + A V +G R GI I L LNE E+
Sbjct: 247 ILHNEN-------SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITELN-LNEKEK 296
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 4 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF 63
V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ + +V
Sbjct: 71 VVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVA 126
Query: 64 KKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTIL-------- 114
+ P R++G T+LD R +AE L + P+ V V+G H +L
Sbjct: 127 YALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVG 186
Query: 115 --PLLSQVKPSC-SLTPTEIDYLTDRIQNGGTEVVEAK------TGAGSATLSMA 160
PLL + +L+P + + + ++ ++E K GAG A L A
Sbjct: 187 GVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRA 241
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG +R +L I+K + + K P AI LI+NPV+ IA
Sbjct: 77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V +K+ ++ G T LD R +A+ G++ + V + G H G + +PL
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 121 K----PSCSLTP 128
P TP
Sbjct: 192 TIGGVPMSDWTP 203
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P+KPG +R DL N N I+ ++ + + I + +NPV+ I
Sbjct: 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTY 129
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH----------AG 110
K + +R++G T LD R + + +DPR VD ++G H A
Sbjct: 130 ATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTAT 189
Query: 111 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAK----TGAGSATLSMAYAAAKF 166
+ P + V ++ ++ L D ++N +++ K G G+A + ++ A +
Sbjct: 190 IGTRP-VRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRD 248
Query: 167 ADACL 171
+A L
Sbjct: 249 ENAVL 253
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+V+I AG ++ G +R +L N I K + I K P + ++SNPV+ I V
Sbjct: 91 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD----ILTYV 146
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ P ++G H G + +P+ S V
Sbjct: 147 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEH-GDSSVPVWSGVN 205
Query: 122 PS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ SL + TD + + EV++ K G + ++ + A A++
Sbjct: 206 VAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---GYTSWAIGLSVADLAES 262
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 263 IMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV-TLTPEEEAHLKKSAD 321
Query: 230 ELAGSIQKGVSF 241
L G IQK + F
Sbjct: 322 TLWG-IQKELQF 332
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 24/252 (9%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 120 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 170 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILH--NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 229 KELAGSIQKGVS 240
L + + +
Sbjct: 305 ATLKSVLARAFT 316
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 24/243 (9%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQ- 119
K +R++G T+LD R + E + P+ V ++G H G T LP+ SQ
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQA 190
Query: 120 ---VKPSCSLTPT-------EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
V P L + +++ + +++ +++E K G+ +A A+ A
Sbjct: 191 YIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRA 247
Query: 170 CLRGLRGDAGVIECAYVASTVTELP-FFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228
L +A + AY+ E + + R GI E+ + LN+ E+ +
Sbjct: 248 ILH--NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSA 304
Query: 229 KEL 231
L
Sbjct: 305 ATL 307
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA- 60
+I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++ I
Sbjct: 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWK 130
Query: 61 -------EVFKKVGTYDPKRL 74
EVF D +RL
Sbjct: 131 ESGKPRNEVFGMGNQLDSQRL 151
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 110/252 (43%), Gaps = 23/252 (9%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VII AG ++ G +R +L N I K + + K P + ++SNPV+ I V
Sbjct: 90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVD----ILTYV 145
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
K+ + R++G LD R + E LG+ ++G H G + +P+ S +
Sbjct: 146 AWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEH-GDSSVPVWSGMN 204
Query: 122 PS-CSLTPTEIDYLTD-----------RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ SL + TD ++ + EV++ K G T ++ + A A++
Sbjct: 205 VAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLK---GYTTWAIGLSVADLAES 261
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ LR + + E F + LG+ GI ++ + L E A L+K+
Sbjct: 262 IMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKV-TLTSEEEAHLKKSAD 320
Query: 230 ELAGSIQKGVSF 241
L G IQK + F
Sbjct: 321 TLWG-IQKELQF 331
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 31/246 (12%)
Query: 4 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAE 61
++ G PRK GMTR+DL NA I L + I CP K ++ +I NP + I
Sbjct: 80 IVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVI-IIFNPAD----ITGL 134
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGH----------AG 110
V P ++ + LD R + +A+ G+ V + GGH A
Sbjct: 135 VTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMAVFASTAK 194
Query: 111 VTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
V PL + LT + L R+ GG +++ + S+ S +Y + + A
Sbjct: 195 VNGTPLTDLIGTD-KLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSPSYVSIEMIRAA 251
Query: 171 LRG--LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIE--EIYSLGPLNEYERAGLEK 226
+ G R AG YV E A + + + G++ +I LG NE ERA L++
Sbjct: 252 MGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDINQLG--NEAERAALKE 305
Query: 227 AKKELA 232
+ LA
Sbjct: 306 SYSHLA 311
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+VI+ AG +KPG +R DL NA I + L I + P A++ + SNPV+ +A ++
Sbjct: 70 VVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQL 129
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLS 118
+ ++G T+LD R +A+ G+D V+G H +L S
Sbjct: 130 APG------QPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSS 180
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAAE 61
I I+ PRK GM R DL +NA I K E IA V ++ NP N+ I +
Sbjct: 103 IAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLK 162
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
+ G +P+ + +T LD RA + +A G+ +V ++ G+ T +P
Sbjct: 163 SAQ--GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSSTQVP 214
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 113
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYV 146
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 113
K+ R++G LD R +AE LG+ P ++G H ++
Sbjct: 147 TWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSV 198
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNSTVP 57
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 81 LDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANTNCL 138
Query: 58 IAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 116
A++ + PK +T LD RA +A LG+ +V ++ G+ T P
Sbjct: 139 TASKSAPSI----PKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPD 194
Query: 117 LSQVK 121
++ K
Sbjct: 195 VNHAK 199
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIA--KCCPKAI-VNLISNPVNSTVP 57
+D+ I+ +PR+ GM R DL N I K C+G A K K++ V ++ NP N+
Sbjct: 80 LDVAILVGSMPRRDGMERKDLLKANVKIFK--CQGAALDKYAKKSVKVIVVGNPANTNCL 137
Query: 58 IAAEVFKKVGTYDPKRLLG-VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 116
A++ + PK +T LD RA +A LG+ +V ++ G+ T P
Sbjct: 138 TASKSAPSI----PKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPD 193
Query: 117 LSQVK 121
++ K
Sbjct: 194 VNHAK 198
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
IV++ AGV ++ G +R +L N + K + I K P I+ ++SNPV+ I V
Sbjct: 92 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD----ILTYV 147
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTI 113
K+ R++G LD R + E LG+ P ++G H ++
Sbjct: 148 AWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSV 199
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+V+I AG ++ G +R +L N I K + I K P I+ ++SNPV+ +A
Sbjct: 92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVAW-- 149
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 113
K+ R++G LD R + E LG+ V+G H +G+ +
Sbjct: 150 --KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNV 207
Query: 114 LPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 171
+ ++ P + D+ L + + EV++ K G + ++ + A A+ +
Sbjct: 208 ASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTSWAIGLSVADLAETIM 262
Query: 172 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 231
+ L V + + F + L GI I + L E L+K+ L
Sbjct: 263 KNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTL 321
Query: 232 AGSIQKGVSF 241
IQK + F
Sbjct: 322 -WDIQKDLKF 330
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 101/250 (40%), Gaps = 22/250 (8%)
Query: 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEV 62
+V+I AG ++ G +R +L N I K + I K P I+ ++SNPV+ +A
Sbjct: 91 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVDVLTYVAW-- 148
Query: 63 FKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVTI 113
K+ R++G LD R + E LG+ V+G H +G+ +
Sbjct: 149 --KLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNV 206
Query: 114 LPLLSQVKPSCSLTPTEIDY--LTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACL 171
+ ++ P + D+ L + + EV++ K G + ++ + A A+ +
Sbjct: 207 ASI--KLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---GYTSWAIGLSVADLAETIM 261
Query: 172 RGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 231
+ L V + + F + L GI I + L E L+K+ L
Sbjct: 262 KNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTL 320
Query: 232 AGSIQKGVSF 241
IQK + F
Sbjct: 321 -WDIQKDLKF 329
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 11 PRKPGMTRDDLFNINAGIVKTLCEGI-AKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY 69
PR PGM R DL +IN I + + A P V ++ NP N+ I K
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 70 DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
PK +T LD RA +A G+ +V + G+ T +P
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVP 231
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 26 AGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVR 84
+ +V+++ + + ++ +ISNPV+ + +F+ V + +++G T+LD R
Sbjct: 99 SSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTAR 154
Query: 85 ANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK----PSCSLTPT-EIDY--LTDR 137
V E LDPR V +G H G + S V+ P +L +ID + +
Sbjct: 155 MQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEE 213
Query: 138 IQNGGTEVVEAK--TGAGSATLSMAYAAAKFADA 169
+ GG V+ K T G AT ++ A A ADA
Sbjct: 214 ARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADA 247
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 13/172 (7%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIA 59
+D ++ PR PGM R L +IN I + + K + V ++ NP N+ I
Sbjct: 109 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALI- 167
Query: 60 AEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLS 118
K K +T LD RA +A G+ +V +V + G H+ + L+
Sbjct: 168 --CLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLN 225
Query: 119 Q------VKPSCSLTPTEIDYLTDRIQNGGTEVVE--AKTGAGSATLSMAYA 162
VK T + T +Q G +++ ++ A S +S+A A
Sbjct: 226 AKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADA 277
>pdb|3U95|A Chain A, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|B Chain B, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|C Chain C, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|D Chain D, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|E Chain E, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
pdb|3U95|F Chain F, Crystal Structure Of A Putative Alpha-Glucosidase From
Thermotoga Neapolitana
Length = 477
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 32 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 91
+ E + K PKA + +NPV E+ + V +R G ++ V E
Sbjct: 142 IAEKMKKMAPKAYLMQTANPV-------FEITQAV-----RRWTGANIIGFCHGVAGVYE 189
Query: 92 V---LGLDPREVDVPVVGGHAGVTI 113
V LGLDP EVD V G + G+ +
Sbjct: 190 VFERLGLDPEEVDWQVAGVNHGIWL 214
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat
Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat
Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat
Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat
Domain
Length = 259
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 39 CCPKAIVNLISNPVNSTVPIAAEVFKKVGT 68
C PKA++NL SN N T+P+ ++ ++ G
Sbjct: 47 CLPKALLNL-SNGRNDTIPVLLDIAERTGN 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,944,469
Number of Sequences: 62578
Number of extensions: 282374
Number of successful extensions: 958
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 96
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)