Query 026051
Match_columns 244
No_of_seqs 122 out of 1164
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01772 MDH_euk_gproteo mala 100.0 1.3E-65 2.8E-70 452.9 25.6 243 1-243 68-311 (312)
2 cd01337 MDH_glyoxysomal_mitoch 100.0 7.4E-65 1.6E-69 447.4 25.0 242 1-242 69-310 (310)
3 COG0039 Mdh Malate/lactate deh 100.0 1.9E-64 4.2E-69 440.9 25.1 232 1-243 70-312 (313)
4 PRK05086 malate dehydrogenase; 100.0 7.1E-61 1.5E-65 424.1 26.2 243 1-244 70-312 (312)
5 cd05290 LDH_3 A subgroup of L- 100.0 2.1E-60 4.5E-65 419.7 23.1 223 1-235 69-306 (307)
6 PLN00106 malate dehydrogenase 100.0 9.2E-60 2E-64 417.2 26.9 236 1-236 87-322 (323)
7 PLN00135 malate dehydrogenase 100.0 7.8E-60 1.7E-64 415.3 25.8 234 1-243 59-309 (309)
8 PTZ00325 malate dehydrogenase; 100.0 1.7E-59 3.6E-64 415.2 26.1 236 1-244 77-319 (321)
9 KOG1495 Lactate dehydrogenase 100.0 9.9E-60 2.1E-64 395.4 21.1 223 1-235 89-327 (332)
10 TIGR01771 L-LDH-NAD L-lactate 100.0 2.1E-59 4.6E-64 412.2 21.9 221 1-233 65-299 (299)
11 TIGR01759 MalateDH-SF1 malate 100.0 8.7E-59 1.9E-63 411.5 23.6 228 1-238 80-323 (323)
12 TIGR01763 MalateDH_bact malate 100.0 3.2E-58 6.9E-63 406.1 23.5 227 1-237 70-304 (305)
13 cd05291 HicDH_like L-2-hydroxy 100.0 4.4E-58 9.5E-63 406.0 23.7 224 1-236 69-305 (306)
14 PLN02602 lactate dehydrogenase 100.0 6.2E-58 1.4E-62 409.5 24.5 226 1-238 106-348 (350)
15 cd05293 LDH_1 A subgroup of L- 100.0 6.1E-58 1.3E-62 405.0 23.3 224 1-236 72-311 (312)
16 cd00704 MDH Malate dehydrogena 100.0 2E-57 4.3E-62 403.3 24.7 227 1-239 77-323 (323)
17 PRK05442 malate dehydrogenase; 100.0 2E-57 4.4E-62 403.2 24.4 231 1-242 81-326 (326)
18 TIGR01756 LDH_protist lactate 100.0 2.2E-57 4.9E-62 400.6 24.1 231 1-242 61-312 (313)
19 TIGR01757 Malate-DH_plant mala 100.0 5.1E-57 1.1E-61 406.4 24.7 232 1-242 121-368 (387)
20 PRK00066 ldh L-lactate dehydro 100.0 7.6E-57 1.7E-61 398.8 24.1 226 1-238 74-313 (315)
21 KOG1494 NAD-dependent malate d 100.0 4.6E-56 1E-60 374.9 26.8 243 1-243 97-340 (345)
22 cd00300 LDH_like L-lactate deh 100.0 8.7E-57 1.9E-61 396.5 23.0 223 1-235 67-299 (300)
23 PLN00112 malate dehydrogenase 100.0 2E-56 4.3E-61 408.0 24.5 232 1-242 177-424 (444)
24 PTZ00117 malate dehydrogenase; 100.0 1.3E-55 2.8E-60 391.8 26.3 231 1-241 74-317 (319)
25 PTZ00082 L-lactate dehydrogena 100.0 1.5E-55 3.2E-60 391.3 25.3 227 1-237 75-319 (321)
26 cd05292 LDH_2 A subgroup of L- 100.0 2E-55 4.4E-60 389.1 23.4 225 1-237 68-307 (308)
27 TIGR01758 MDH_euk_cyt malate d 100.0 7.6E-55 1.6E-59 386.9 25.5 230 1-239 76-323 (324)
28 cd01338 MDH_choloroplast_like 100.0 8.7E-55 1.9E-59 386.2 24.8 228 1-238 79-320 (322)
29 cd01336 MDH_cytoplasmic_cytoso 100.0 8.2E-54 1.8E-58 380.8 23.6 229 1-239 79-325 (325)
30 cd01339 LDH-like_MDH L-lactate 100.0 1.3E-53 2.9E-58 376.4 24.0 225 1-235 67-299 (300)
31 cd05294 LDH-like_MDH_nadp A la 100.0 1.8E-53 4E-58 376.6 23.3 224 1-236 73-307 (309)
32 cd05295 MDH_like Malate dehydr 100.0 3.5E-52 7.5E-57 380.0 23.8 226 1-239 200-451 (452)
33 PRK06223 malate dehydrogenase; 100.0 7.5E-52 1.6E-56 366.3 24.6 227 1-237 71-305 (307)
34 cd00650 LDH_MDH_like NAD-depen 100.0 3.6E-45 7.8E-50 317.1 23.4 189 1-235 71-262 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.5E-41 3.3E-46 281.6 16.3 233 2-243 82-331 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.1E-38 2.4E-43 260.5 14.0 159 78-242 1-174 (174)
37 cd05296 GH4_P_beta_glucosidase 99.9 4.1E-23 8.9E-28 189.3 18.0 221 1-238 76-380 (419)
38 PRK15076 alpha-galactosidase; 99.9 2.3E-22 5.1E-27 185.1 17.7 223 1-239 76-386 (431)
39 cd05197 GH4_glycoside_hydrolas 99.9 9.1E-22 2E-26 180.7 18.8 197 21-238 115-391 (425)
40 PF00056 Ldh_1_N: lactate/mala 99.9 3.9E-22 8.5E-27 157.5 7.3 72 1-76 70-141 (141)
41 cd05297 GH4_alpha_glucosidase_ 99.8 4.6E-19 9.9E-24 163.3 20.5 224 1-238 75-388 (423)
42 cd05298 GH4_GlvA_pagL_like Gly 99.8 1.8E-18 4E-23 159.3 19.1 202 21-239 115-395 (437)
43 COG1486 CelF Alpha-galactosida 99.7 3.1E-15 6.7E-20 136.0 17.6 204 23-239 120-398 (442)
44 PF02056 Glyco_hydro_4: Family 98.8 1.8E-08 3.9E-13 82.5 7.5 68 21-95 116-183 (183)
45 PF11975 Glyco_hydro_4C: Famil 97.0 0.0069 1.5E-07 51.5 10.2 78 153-239 134-215 (232)
46 cd01836 FeeA_FeeB_like SGNH_hy 75.8 10 0.00022 30.4 6.3 48 1-51 68-115 (191)
47 cd01838 Isoamyl_acetate_hydrol 75.1 9.7 0.00021 30.3 6.1 48 1-51 64-116 (199)
48 PF08885 GSCFA: GSCFA family; 68.3 18 0.00038 31.3 6.3 32 22-53 147-178 (251)
49 cd01833 XynB_like SGNH_hydrola 67.4 21 0.00045 27.5 6.2 46 1-50 41-87 (157)
50 cd01827 sialate_O-acetylestera 66.0 23 0.00049 28.1 6.3 47 1-50 68-116 (188)
51 cd01844 SGNH_hydrolase_like_6 65.7 14 0.0003 29.3 5.0 46 1-52 58-103 (177)
52 cd01828 sialate_O-acetylestera 65.7 23 0.00049 27.7 6.2 48 1-51 49-96 (169)
53 TIGR01181 dTDP_gluc_dehyt dTDP 65.6 46 0.001 28.4 8.6 102 1-108 74-184 (317)
54 cd01831 Endoglucanase_E_like E 65.4 27 0.00059 27.4 6.6 49 1-53 56-107 (169)
55 cd01820 PAF_acetylesterase_lik 65.0 20 0.00044 29.4 6.0 47 1-50 90-136 (214)
56 cd04502 SGNH_hydrolase_like_7 61.1 26 0.00056 27.5 5.7 46 1-50 51-97 (171)
57 cd01841 NnaC_like NnaC (CMP-Ne 60.3 30 0.00064 27.1 6.0 49 2-53 53-102 (174)
58 cd01825 SGNH_hydrolase_peri1 S 59.5 30 0.00065 27.3 5.9 48 1-51 57-105 (189)
59 TIGR01915 npdG NADPH-dependent 58.8 88 0.0019 25.9 8.8 23 31-53 83-105 (219)
60 PF11239 DUF3040: Protein of u 57.9 11 0.00025 26.4 2.8 20 215-234 2-21 (82)
61 COG0426 FpaA Uncharacterized f 57.4 45 0.00098 30.7 7.1 80 21-109 256-340 (388)
62 TIGR03310 matur_ygfJ molybdenu 53.3 17 0.00037 28.9 3.5 50 2-52 1-51 (188)
63 PF04026 SpoVG: SpoVG; InterP 51.9 27 0.00058 24.9 3.8 41 185-228 36-76 (84)
64 cd01832 SGNH_hydrolase_like_1 51.4 46 0.00099 26.2 5.7 46 1-51 68-114 (185)
65 cd01823 SEST_like SEST_like. A 49.1 45 0.00097 28.1 5.6 27 25-51 129-155 (259)
66 cd02067 B12-binding B12 bindin 47.5 76 0.0016 23.4 6.0 30 24-53 62-92 (119)
67 cd01839 SGNH_arylesterase_like 47.5 48 0.001 26.9 5.4 48 1-51 80-134 (208)
68 cd04506 SGNH_hydrolase_YpmR_li 46.3 42 0.0009 27.1 4.8 49 1-49 69-128 (204)
69 PRK09458 pspB phage shock prot 46.0 44 0.00095 23.3 4.0 29 215-243 35-66 (75)
70 PF04432 FrhB_FdhB_C: Coenzyme 45.4 76 0.0016 25.0 6.0 64 42-107 4-72 (161)
71 PF05582 Peptidase_U57: YabG p 45.0 42 0.00092 29.5 4.7 48 2-49 156-207 (287)
72 TIGR00640 acid_CoA_mut_C methy 43.6 1.1E+02 0.0024 23.5 6.5 54 21-81 62-117 (132)
73 PF02698 DUF218: DUF218 domain 42.9 68 0.0015 24.7 5.4 55 40-95 36-98 (155)
74 PRK02628 nadE NAD synthetase; 42.4 81 0.0018 31.3 6.9 73 27-101 347-428 (679)
75 PRK05808 3-hydroxybutyryl-CoA 41.8 70 0.0015 27.6 5.8 40 126-172 159-198 (282)
76 PRK11889 flhF flagellar biosyn 41.7 1.2E+02 0.0027 28.3 7.4 67 2-82 322-389 (436)
77 TIGR02622 CDP_4_6_dhtase CDP-g 41.4 2.3E+02 0.0049 25.0 9.2 49 2-50 77-127 (349)
78 PTZ00323 NAD+ synthase; Provis 40.9 1.1E+02 0.0024 27.1 6.8 85 12-101 20-112 (294)
79 TIGR03289 frhB coenzyme F420 h 40.1 1.4E+02 0.003 26.0 7.3 61 41-105 91-161 (275)
80 cd00229 SGNH_hydrolase SGNH_hy 39.3 89 0.0019 23.3 5.5 50 1-51 66-115 (187)
81 TIGR02855 spore_yabG sporulati 39.1 78 0.0017 27.8 5.4 48 2-49 155-206 (283)
82 PF00919 UPF0004: Uncharacteri 38.2 92 0.002 22.6 5.0 6 5-10 4-9 (98)
83 PLN02353 probable UDP-glucose 37.9 86 0.0019 29.7 6.0 55 1-56 79-135 (473)
84 cd02071 MM_CoA_mut_B12_BD meth 37.3 1.5E+02 0.0033 22.0 6.4 48 23-77 61-109 (122)
85 cd07368 PhnC_Bs_like PhnC is a 37.1 1.2E+02 0.0025 26.5 6.4 34 18-52 24-57 (277)
86 COG0041 PurE Phosphoribosylcar 36.4 2E+02 0.0042 23.1 6.8 67 74-162 8-75 (162)
87 cd01834 SGNH_hydrolase_like_2 36.1 71 0.0015 25.0 4.6 48 1-51 62-113 (191)
88 PF14424 Toxin-deaminase: The 35.3 1E+02 0.0022 23.8 5.1 47 23-69 75-125 (133)
89 PF02310 B12-binding: B12 bind 35.1 85 0.0018 22.9 4.6 71 30-108 41-113 (121)
90 COG0796 MurI Glutamate racemas 35.0 3.1E+02 0.0067 24.0 9.0 124 17-159 48-190 (269)
91 PRK15098 beta-D-glucoside gluc 34.4 52 0.0011 33.1 4.2 49 1-53 502-556 (765)
92 PRK12726 flagellar biosynthesi 34.4 2E+02 0.0043 26.7 7.6 68 1-82 286-354 (407)
93 PF09370 TIM-br_sig_trns: TIM- 34.3 2.4E+02 0.0053 24.6 7.7 90 1-93 171-265 (268)
94 KOG0093 GTPase Rab3, small G p 34.2 65 0.0014 25.8 3.8 51 25-96 108-159 (193)
95 PRK13259 regulatory protein Sp 33.8 57 0.0012 23.8 3.2 36 192-228 41-76 (94)
96 cd07359 PCA_45_Doxase_B_like S 33.3 1.5E+02 0.0032 25.5 6.4 37 13-49 17-53 (271)
97 cd01822 Lysophospholipase_L1_l 32.8 1.3E+02 0.0029 23.2 5.6 43 1-49 65-108 (177)
98 PRK09325 coenzyme F420-reducin 32.7 1.6E+02 0.0034 25.7 6.5 63 39-105 91-163 (282)
99 PRK08293 3-hydroxybutyryl-CoA 32.6 1.1E+02 0.0025 26.4 5.6 39 128-172 163-201 (287)
100 PF02310 B12-binding: B12 bind 31.0 2.1E+02 0.0045 20.7 6.7 70 30-108 18-89 (121)
101 TIGR01777 yfcH conserved hypot 30.9 95 0.0021 26.2 4.8 42 1-42 58-103 (292)
102 cd04501 SGNH_hydrolase_like_4 30.8 1.8E+02 0.0039 22.7 6.1 49 1-53 60-108 (183)
103 COG1035 FrhB Coenzyme F420-red 30.7 4.1E+02 0.0088 24.0 9.5 86 16-106 111-212 (332)
104 TIGR03202 pucB xanthine dehydr 30.7 64 0.0014 25.8 3.5 49 3-52 3-51 (190)
105 cd07950 Gallate_Doxase_N The N 30.5 1.2E+02 0.0025 26.6 5.3 33 20-53 28-60 (277)
106 cd02069 methionine_synthase_B1 30.3 1.1E+02 0.0025 25.5 5.0 33 21-53 148-180 (213)
107 PF13778 DUF4174: Domain of un 29.4 1.5E+02 0.0032 22.3 5.0 24 87-110 67-90 (118)
108 PF02540 NAD_synthase: NAD syn 29.4 91 0.002 26.6 4.4 63 31-97 8-76 (242)
109 PRK13364 protocatechuate 4,5-d 29.2 60 0.0013 28.5 3.2 28 25-53 33-60 (278)
110 cd07367 CarBb CarBb is the B s 29.1 1.6E+02 0.0036 25.4 6.0 37 13-49 15-51 (268)
111 cd00553 NAD_synthase NAD+ synt 28.9 2E+02 0.0044 24.3 6.4 68 28-99 10-83 (248)
112 PRK06035 3-hydroxyacyl-CoA deh 28.9 1.5E+02 0.0033 25.6 5.8 21 128-148 164-184 (291)
113 cd00953 KDG_aldolase KDG (2-ke 28.8 2.4E+02 0.0052 24.4 7.0 122 79-226 16-147 (279)
114 TIGR01552 phd_fam prevent-host 28.8 49 0.0011 20.6 2.0 27 199-228 23-49 (52)
115 cd01821 Rhamnogalacturan_acety 28.4 3E+02 0.0066 21.8 8.6 84 1-102 66-154 (198)
116 cd00762 NAD_bind_malic_enz NAD 28.4 1.1E+02 0.0024 26.5 4.6 44 30-78 122-167 (254)
117 PF13394 Fer4_14: 4Fe-4S singl 27.6 26 0.00057 25.7 0.7 52 26-77 31-85 (119)
118 COG2088 SpoVG Uncharacterized 27.5 1.1E+02 0.0023 22.1 3.6 38 192-230 41-78 (95)
119 PF12804 NTP_transf_3: MobA-li 27.1 25 0.00054 27.1 0.5 48 3-50 1-48 (160)
120 PRK13366 protocatechuate 4,5-d 26.9 1.4E+02 0.0031 26.2 5.2 35 17-52 25-59 (284)
121 TIGR01454 AHBA_synth_RP 3-amin 26.4 3.3E+02 0.0071 21.8 7.1 72 31-108 79-157 (205)
122 PRK10084 dTDP-glucose 4,6 dehy 25.0 4.5E+02 0.0097 22.9 8.2 104 1-108 74-201 (352)
123 PRK14337 (dimethylallyl)adenos 24.9 1.6E+02 0.0035 27.5 5.5 44 1-52 40-84 (446)
124 PF01073 3Beta_HSD: 3-beta hyd 24.9 2.6E+02 0.0056 24.2 6.5 43 1-43 67-110 (280)
125 cd07372 2A5CPDO_B The beta sub 24.8 1.6E+02 0.0034 26.0 5.1 32 17-48 27-58 (294)
126 COG1211 IspD 4-diphosphocytidy 24.7 3.8E+02 0.0082 22.8 7.2 120 3-142 7-129 (230)
127 KOG0652 26S proteasome regulat 24.7 1.4E+02 0.0031 26.4 4.6 66 28-97 294-362 (424)
128 PF14164 YqzH: YqzH-like prote 24.3 96 0.0021 20.9 2.8 20 214-233 24-43 (64)
129 cd04131 Rnd Rnd subfamily. Th 24.3 1.3E+02 0.0029 23.8 4.3 24 30-53 93-116 (178)
130 cd07369 PydA_Rs_like PydA is a 24.1 1.5E+02 0.0032 26.7 4.9 35 17-52 23-57 (329)
131 PRK11121 nrdG anaerobic ribonu 24.1 1.3E+02 0.0029 23.5 4.2 74 29-108 52-131 (154)
132 COG1004 Ugd Predicted UDP-gluc 24.0 1.7E+02 0.0037 27.2 5.2 50 1-56 77-128 (414)
133 PRK00768 nadE NAD synthetase; 23.8 2.7E+02 0.0059 24.3 6.3 81 13-96 13-102 (268)
134 cd08060 MPN_UPF0172 Mov34/MPN/ 23.8 1.1E+02 0.0023 25.1 3.6 26 26-51 88-113 (182)
135 TIGR03848 MSMEG_4193 probable 23.4 2.6E+02 0.0057 22.6 6.0 53 14-71 115-168 (204)
136 PRK14333 (dimethylallyl)adenos 23.2 1.5E+02 0.0031 27.8 4.8 75 1-91 44-120 (448)
137 PRK01261 aroD 3-dehydroquinate 23.1 4.6E+02 0.01 22.2 7.6 65 27-95 132-198 (229)
138 PF14566 PTPlike_phytase: Inos 23.0 2.1E+02 0.0045 22.3 5.0 39 128-168 108-149 (149)
139 PF13353 Fer4_12: 4Fe-4S singl 23.0 1.5E+02 0.0033 22.0 4.2 27 26-52 38-64 (139)
140 PF09695 YtfJ_HI0045: Bacteria 23.0 1.6E+02 0.0036 23.6 4.4 104 110-226 23-155 (160)
141 smart00775 LNS2 LNS2 domain. T 22.8 1.8E+02 0.0038 22.9 4.6 41 30-77 104-148 (157)
142 COG0329 DapA Dihydrodipicolina 22.8 3.2E+02 0.0069 24.0 6.7 123 79-226 21-156 (299)
143 COG0763 LpxB Lipid A disacchar 22.7 1.6E+02 0.0035 27.1 4.8 37 17-53 197-233 (381)
144 COG0621 MiaB 2-methylthioadeni 21.9 1.3E+02 0.0028 28.3 4.1 73 1-92 41-114 (437)
145 PRK14329 (dimethylallyl)adenos 21.6 2.1E+02 0.0046 26.9 5.6 17 33-49 86-102 (467)
146 PF02719 Polysacc_synt_2: Poly 21.5 4.2E+02 0.0092 23.4 7.1 92 2-119 79-184 (293)
147 cd04182 GT_2_like_f GT_2_like_ 21.4 91 0.002 24.3 2.7 50 3-53 3-52 (186)
148 PTZ00397 macrophage migration 21.3 1.1E+02 0.0025 22.5 3.1 22 83-104 79-100 (116)
149 cd02068 radical_SAM_B12_BD B12 21.2 3.5E+02 0.0075 20.0 8.7 18 29-46 55-72 (127)
150 TIGR00959 ffh signal recogniti 21.1 3.1E+02 0.0067 25.6 6.5 32 74-108 241-277 (428)
151 cd07949 PCA_45_Doxase_B_like_1 21.0 77 0.0017 27.7 2.4 26 26-52 34-59 (276)
152 PRK06411 NADH dehydrogenase su 21.0 1.5E+02 0.0032 24.4 3.9 13 1-13 75-87 (183)
153 TIGR02197 heptose_epim ADP-L-g 20.9 3.3E+02 0.0071 23.2 6.4 47 1-49 67-113 (314)
154 TIGR01574 miaB-methiolase tRNA 20.9 2.1E+02 0.0045 26.6 5.4 45 1-53 38-83 (438)
155 PRK14331 (dimethylallyl)adenos 20.6 1E+02 0.0022 28.7 3.2 41 1-49 38-79 (437)
156 PRK11150 rfaD ADP-L-glycero-D- 20.5 3.4E+02 0.0073 23.2 6.4 47 1-49 69-115 (308)
157 COG3958 Transketolase, C-termi 20.4 3.5E+02 0.0075 24.1 6.2 41 1-55 193-235 (312)
158 PF08899 DUF1844: Domain of un 20.2 1.3E+02 0.0029 20.8 2.9 18 215-232 54-71 (74)
No 1
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=1.3e-65 Score=452.89 Aligned_cols=243 Identities=59% Similarity=0.947 Sum_probs=228.4
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
||+||+|||.|++|||+|+|++..|++|++++++.|++++|++++|++|||+|.||++||+++++.+|||++||||+|.|
T Consensus 68 aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~L 147 (312)
T TIGR01772 68 ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTL 147 (312)
T ss_pred CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999779
Q ss_pred hHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHHH
Q 026051 81 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a 160 (244)
||+||+++||++++++|++|+++||||||+++++|+||++++...++++++++|.++++++|++|+++|.|||+|+||+|
T Consensus 148 DsaR~r~~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia 227 (312)
T TIGR01772 148 DIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMA 227 (312)
T ss_pred hHHHHHHHHHHHhCCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHH
Confidence 99999999999999999999999999997569999999998654466666899999999999999998667899999999
Q ss_pred HHHHHHHHHHHhccCCCCCeeeeeEecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 026051 161 YAAAKFADACLRGLRGDAGVIECAYVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 239 (244)
+++++++++|++++.|++.++|+++++++|+ +++|||+||+||++|+++++++++|+++|+++|++|++.|++.+++|+
T Consensus 228 ~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~ 307 (312)
T TIGR01772 228 FAGARFVLSLVRGLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGE 307 (312)
T ss_pred HHHHHHHHHHHHhhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987767889999888888884 789999999999999999998856999999999999999999999999
Q ss_pred hhhh
Q 026051 240 SFVR 243 (244)
Q Consensus 240 ~~~~ 243 (244)
+|+.
T Consensus 308 ~~~~ 311 (312)
T TIGR01772 308 EFVA 311 (312)
T ss_pred HHhc
Confidence 9975
No 2
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.4e-65 Score=447.42 Aligned_cols=242 Identities=69% Similarity=1.088 Sum_probs=224.7
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
|||||||||.||+|||+|+||+..|++|++++++.+++++|++++|++|||+|.||+++||++++.++||++||||+|.|
T Consensus 69 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~L 148 (310)
T cd01337 69 ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTL 148 (310)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeech
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHHH
Q 026051 81 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a 160 (244)
||+||++++|+++++++++|+++|||||+|++++|+||++.+...++++++++|.++++++|++|+++|+|||+|+||+|
T Consensus 149 Ds~R~~~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a 228 (310)
T cd01337 149 DVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMA 228 (310)
T ss_pred HHHHHHHHHHHHhCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHH
Confidence 99999999999999999999999999995589999999998754455556889999999999999998667899999999
Q ss_pred HHHHHHHHHHHhccCCCCCeeeeeEecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 026051 161 YAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 240 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~ 240 (244)
.++++++++|+++.++++.+++|+++.++..+++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|+.
T Consensus 229 ~a~~~iv~aIl~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~ 308 (310)
T cd01337 229 YAGARFANSLLRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVD 308 (310)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999876667788999877654346899999999999999999998349999999999999999999999998
Q ss_pred hh
Q 026051 241 FV 242 (244)
Q Consensus 241 ~~ 242 (244)
|+
T Consensus 309 ~~ 310 (310)
T cd01337 309 FV 310 (310)
T ss_pred cC
Confidence 75
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.9e-64 Score=440.87 Aligned_cols=232 Identities=41% Similarity=0.627 Sum_probs=218.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||||||.||||||+|+||+..|++|++++++++++++|+++++|+|||+| +|||++|+.+|+|++||||+ |.
T Consensus 70 aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~ 145 (313)
T COG0039 70 ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTV 145 (313)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----C---CChhHHHHHHHHHhcCcceeeeccCC
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----S---LTPTEIDYLTDRIQNGGTEVVEAKTG 151 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~---~~~~~~~~l~~~v~~~~~~ii~~k~~ 151 (244)
|||+||+++||+++++++++|++||+|+| |+++||+||++++++ . .++++++++.+++|++|++|+++| |
T Consensus 146 LDsaR~~~~lae~~~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G 223 (313)
T COG0039 146 LDSARFRTFLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-G 223 (313)
T ss_pred HHHHHHHHHHHHHhCCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-C
Confidence 99999999999999999999999999999 599999999999875 1 233567899999999999999988 4
Q ss_pred CCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCC-CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 026051 152 AGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229 (244)
Q Consensus 152 ~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~ 229 (244)
.| ++||+|.++++|+++|+++ +++++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus 224 ~~-t~~~~A~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~ 298 (313)
T COG0039 224 AG-TYYGPAAALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAE 298 (313)
T ss_pred cc-chhhHHHHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHH
Confidence 45 9999999999999999996 78899998 789999 58899999999999999999999 899999999999999
Q ss_pred HHHHHHHHhhhhhh
Q 026051 230 ELAGSIQKGVSFVR 243 (244)
Q Consensus 230 ~l~~~~~~~~~~~~ 243 (244)
.||+.++.+.++++
T Consensus 299 ~lk~~i~~~~~~~~ 312 (313)
T COG0039 299 ELKKNIELVKELVL 312 (313)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988764
No 4
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=7.1e-61 Score=424.05 Aligned_cols=243 Identities=58% Similarity=0.904 Sum_probs=224.9
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
||+||+|+|.+++||++|.+++..|+++++++++.|++++|+++++++|||+|.|++++++.+++++|+|++||||+|.|
T Consensus 70 ~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~L 149 (312)
T PRK05086 70 ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTL 149 (312)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecH
Confidence 69999999999999999999999999999999999999999999999999999777777777779999999999999889
Q ss_pred hHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHHH
Q 026051 81 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a 160 (244)
||+||++++|++|+++|++|+++|||||||+++||+||++ ....+++++++++.++++++|++|+++|.|+|+|+||+|
T Consensus 150 ds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a 228 (312)
T PRK05086 150 DVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMG 228 (312)
T ss_pred HHHHHHHHHHHHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHH
Confidence 9999999999999999999999999999767999999999 332466667999999999999999998767799999999
Q ss_pred HHHHHHHHHHHhccCCCCCeeeeeEecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 026051 161 YAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVS 240 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~~ 240 (244)
.++++++++|++++.|++.++|+++++++-.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.+++|++
T Consensus 229 ~a~~~~v~ai~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~ 308 (312)
T PRK05086 229 QAAARFGLSLVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEE 308 (312)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887778889998877765236799999999999999999998689999999999999999999999999
Q ss_pred hhhC
Q 026051 241 FVRK 244 (244)
Q Consensus 241 ~~~~ 244 (244)
|++|
T Consensus 309 ~~~~ 312 (312)
T PRK05086 309 FVNK 312 (312)
T ss_pred hhcC
Confidence 9986
No 5
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-60 Score=419.68 Aligned_cols=223 Identities=29% Similarity=0.460 Sum_probs=207.2
Q ss_pred CcEEEEcCCCCCCCCCC--HHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-
Q 026051 1 MDIVIIPAGVPRKPGMT--RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV- 77 (244)
Q Consensus 1 aDiviitag~~~~~g~~--r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~- 77 (244)
|||||||||.||||||+ |+|++..|++|++++++++++++|++++|++|||+| +|||++++.+|||++||||+
T Consensus 69 aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~g 144 (307)
T cd05290 69 ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTG 144 (307)
T ss_pred CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheeccc
Confidence 79999999999999999 799999999999999999999999999999999999 99999999999999999999
Q ss_pred chhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCC-----C-----ChhHHHHHHHHHhcCcceeee
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCS-----L-----TPTEIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~-----~-----~~~~~~~l~~~v~~~~~~ii~ 147 (244)
|.|||+||+++||++++++|++|++|||||| |++++|+||++++++. + ++.++++|.++++++|++|++
T Consensus 145 t~LDs~R~~~~la~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 223 (307)
T cd05290 145 TMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN 223 (307)
T ss_pred chHHHHHHHHHHHHHhCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999 5899999999987641 1 122477999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 026051 148 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 225 (244)
Q Consensus 148 ~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 225 (244)
. ||+|+|++|.++++++++|+++ ++.++|++ +.+|+|+ +++|||+||+||++|+++++++ +|+++|+++|+
T Consensus 224 ~---KG~t~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~ 296 (307)
T cd05290 224 R---KGWTNAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLH 296 (307)
T ss_pred c---cCeehHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHH
Confidence 5 4899999999999999999985 78899988 6688884 6899999999999999999998 99999999999
Q ss_pred HHHHHHHHHH
Q 026051 226 KAKKELAGSI 235 (244)
Q Consensus 226 ~s~~~l~~~~ 235 (244)
+|++.|++.+
T Consensus 297 ~s~~~i~~~~ 306 (307)
T cd05290 297 KSAKAIRETI 306 (307)
T ss_pred HHHHHHHHHh
Confidence 9999999865
No 6
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=9.2e-60 Score=417.19 Aligned_cols=236 Identities=78% Similarity=1.200 Sum_probs=220.3
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
||+||+|||.|++||++|+|++..|++|++++++.+++++|+++++++|||+|.++++++|++++.+++||+||+|++.|
T Consensus 87 aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 87 ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHHH
Q 026051 81 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a 160 (244)
|++||++++|+++++++.+|+++|+|||||++|||+||++.+...++++++++|.++++++|++|+++|.|||+|+||+|
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a 246 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMA 246 (323)
T ss_pred hHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHH
Confidence 99999999999999999999999999998789999999997653465667899999999999999997546799999999
Q ss_pred HHHHHHHHHHHhccCCCCCeeeeeEecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 026051 161 YAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ 236 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~ 236 (244)
.++++|+++|+++++|++.++||++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus 247 ~a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 247 YAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998777889999998777664349999999999999999999767999999999999999998875
No 7
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=7.8e-60 Score=415.34 Aligned_cols=234 Identities=23% Similarity=0.338 Sum_probs=215.2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-c
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t 78 (244)
|||||||||.|++|||+|+|++..|++|++++++.|+++ +|+|++|++|||+| +||+++++.+|+|++|+||+ |
T Consensus 59 aDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvD----v~t~~~~~~sg~~~~~vig~gt 134 (309)
T PLN00135 59 VNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPAN----TNALILKEFAPSIPEKNITCLT 134 (309)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHH----HHHHHHHHHcCCCCccEEEeee
Confidence 799999999999999999999999999999999999996 89999999999999 99999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHhCCCCCcc-eeeEeccCCCceeeeccccCCC----CC-----CCChhH--HHHHHHHHhcCcceee
Q 026051 79 MLDVVRANTFVAEVLGLDPREV-DVPVVGGHAGVTILPLLSQVKP----SC-----SLTPTE--IDYLTDRIQNGGTEVV 146 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v-~~~viG~h~g~~~vp~~s~~~~----~~-----~~~~~~--~~~l~~~v~~~~~~ii 146 (244)
.|||+|||++||+++++++++| +++|||||| ++++|+||++++ ++ .+.+++ .++|.++++++|++|+
T Consensus 135 ~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG-~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii 213 (309)
T PLN00135 135 RLDHNRALGQISERLGVPVSDVKNVIIWGNHS-STQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAII 213 (309)
T ss_pred hHHHHHHHHHHHHHhCcChhhceeeEEEEcCC-CceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 599999995 799999999988 43 123333 5789999999999999
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 026051 147 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 223 (244)
Q Consensus 147 ~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~ 223 (244)
+++ ||+|+||+|.++++++++|+++. +++.++|++ +++|+|+ +++|||+||++|++|+++++++ +|+++|+++
T Consensus 214 ~~~--kg~t~~~ia~a~~~iv~ai~~~~-~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~ 289 (309)
T PLN00135 214 KAR--KLSSALSAASSACDHIRDWVLGT-PEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKK 289 (309)
T ss_pred Hcc--CccHHHHHHHHHHHHHHHHHhCC-cCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHH
Confidence 963 47999999999999999999842 257899998 6788884 7899999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 026051 224 LEKAKKELAGSIQKGVSFVR 243 (244)
Q Consensus 224 l~~s~~~l~~~~~~~~~~~~ 243 (244)
|++|++.|+++.+.+++.++
T Consensus 290 l~~S~~~lk~~~~~~~~~~~ 309 (309)
T PLN00135 290 MDATAKELKEEKELAYSCLS 309 (309)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998875
No 8
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-59 Score=415.23 Aligned_cols=236 Identities=57% Similarity=0.927 Sum_probs=221.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHH----HHhCCCCCCCeEE
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVF----KKVGTYDPKRLLG 76 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~----~~~~~~~~~~viG 76 (244)
||+||+|||.|++||++|.+++..|+++++++++.|++++|+++++++|||+| ++++++ ++.+++||+||+|
T Consensus 77 aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd----v~~~~~~~~~~~~sg~p~~~viG 152 (321)
T PTZ00325 77 ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN----STVPIAAETLKKAGVYDPRKLFG 152 (321)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHhhhhhccCCChhheee
Confidence 79999999999999999999999999999999999999999999999999999 666666 5999999999999
Q ss_pred echhhHHHHHHHHHHHhCCCCCcceeeEeccCCCc-eeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCch
Q 026051 77 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGV-TILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSA 155 (244)
Q Consensus 77 ~t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~-~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~ 155 (244)
++.|||+||+++||++++++|++|++||||||| + ++||+||++.. .+++++++++.++++++|++|++.|+|||+|
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~~~VlGeHG-d~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t 229 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVNVPVVGGHS-GVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSA 229 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheEEEEEeecC-CcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCc
Confidence 977999999999999999999999999999995 7 89999999832 4566678999999999999999987677999
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCeeeeeEecCCCC-CccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHHHHHHHHHH
Q 026051 156 TLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVT-ELPFFASKVRLGRAGIEEIYS-LGPLNEYERAGLEKAKKELAG 233 (244)
Q Consensus 156 ~~s~a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~s~~~l~~ 233 (244)
+||+|+++++|+++|++++.|++.++||++++++|+ +++|||+||++|++|++++++ + +|+++|+++|++|++.|++
T Consensus 230 ~~g~a~a~~~i~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~ 308 (321)
T PTZ00325 230 TLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKK 308 (321)
T ss_pred hHHHHHHHHHHHHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999987777888999998899885 789999999999999999999 6 8999999999999999999
Q ss_pred HHHHhhhhhhC
Q 026051 234 SIQKGVSFVRK 244 (244)
Q Consensus 234 ~~~~~~~~~~~ 244 (244)
.++++++|++|
T Consensus 309 ~~~~~~~~~~~ 319 (321)
T PTZ00325 309 NIEKGLEFARK 319 (321)
T ss_pred HHHHHHHHHhc
Confidence 99999999986
No 9
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=9.9e-60 Score=395.37 Aligned_cols=223 Identities=26% Similarity=0.397 Sum_probs=209.9
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
+++||||||..+++|++|++++++|..|||.+.+++.+|.|+++++++|||+| +|||+.||.||||++||||+ |+
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nRViGsGcn 164 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNRVIGSGCN 164 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccceeccCcC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999 99
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC------------CCChhHHHHHHHHHhcCcceeee
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~------------~~~~~~~~~l~~~v~~~~~~ii~ 147 (244)
|||+|||++++++|+++|++++++|+||| |++.||+||.+.+.+ ..+++.|+++.++|.+.+|+|++
T Consensus 165 LDsaRFryLi~~~Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevik 243 (332)
T KOG1495|consen 165 LDSARFRYLIGNRLGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIK 243 (332)
T ss_pred ccHHHHHHHHHHHhCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 589999999997754 35567799999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 026051 148 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224 (244)
Q Consensus 148 ~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l 224 (244)
+| |+|+|++|+++++++++|+.+ .++++|++ .+.|.|+ +++|||+||++|++|+..+++. +|+++|.++|
T Consensus 244 lK---GyTswaIglsva~l~~ail~n---~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL 316 (332)
T KOG1495|consen 244 LK---GYTSWAIGLSVADLAQAILRN---LRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKL 316 (332)
T ss_pred hc---CchHHHHHHHHHHHHHHHHhC---cCceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHH
Confidence 76 899999999999999999996 78899998 6777773 6899999999999999999999 8999999999
Q ss_pred HHHHHHHHHHH
Q 026051 225 EKAKKELAGSI 235 (244)
Q Consensus 225 ~~s~~~l~~~~ 235 (244)
++|++.|.+..
T Consensus 317 ~kSa~tl~~~q 327 (332)
T KOG1495|consen 317 KKSAKTLLEAQ 327 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999998643
No 10
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=2.1e-59 Score=412.25 Aligned_cols=221 Identities=29% Similarity=0.504 Sum_probs=206.2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||||||.||+|||+|+|+++.|++|++++++.+++++|++++|++|||+| ++|+++++.+|||++||||+ |.
T Consensus 65 aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 65 ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CCC------hhHHHHHHHHHhcCcceeeec
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLT------PTEIDYLTDRIQNGGTEVVEA 148 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~~------~~~~~~l~~~v~~~~~~ii~~ 148 (244)
|||+||++++|++++++|++|+++||||| |++++|+||++++++ .++ +.+++++.++++++|++|++.
T Consensus 141 LDs~R~~~~la~~l~v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~ 219 (299)
T TIGR01771 141 LDTARLRYLLAEKLGVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR 219 (299)
T ss_pred HHHHHHHHHHHHHhCcCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999 589999999998764 121 224679999999999999995
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 026051 149 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226 (244)
Q Consensus 149 k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 226 (244)
||+|+|++|+++++++++|+++ ++.++||| +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++
T Consensus 220 ---kG~t~~~~a~a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~ 292 (299)
T TIGR01771 220 ---KGATYYGIGMAVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQK 292 (299)
T ss_pred ---CCeeeHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHH
Confidence 4899999999999999999985 78899998 7788885 6799999999999999999998 999999999999
Q ss_pred HHHHHHH
Q 026051 227 AKKELAG 233 (244)
Q Consensus 227 s~~~l~~ 233 (244)
|++.||+
T Consensus 293 s~~~ik~ 299 (299)
T TIGR01771 293 SAETLKK 299 (299)
T ss_pred HHHHHhC
Confidence 9999974
No 11
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=8.7e-59 Score=411.49 Aligned_cols=228 Identities=26% Similarity=0.372 Sum_probs=208.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVT 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~ilt~~~~~~~-~~~~~~viG~t 78 (244)
|||||||||.|+||||+|+|++..|++|+++++++|++++| ++++|++|||+| +|||++++.+ |||++||||+|
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~t 155 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN----TNALIASKNAPDIPPKNFSAMT 155 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEee
Confidence 79999999999999999999999999999999999999998 999999999999 9999999999 99999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCC-----CCChhH--HHHHHHHHhcCcceeeeccC
Q 026051 79 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAKT 150 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~--~~~l~~~v~~~~~~ii~~k~ 150 (244)
.|||+|||++||++|+++|++|+ .+|||||| ++++|+||++++.+ .++++. +++|.++++++|++|++.|
T Consensus 156 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (323)
T TIGR01759 156 RLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR- 233 (323)
T ss_pred HHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc-
Confidence 99999999999999999999996 56999995 89999999998864 233333 5799999999999999954
Q ss_pred CCCchhH-HHHHHHHHHHHHHHhccCCCCCeeeee-EecC-CCC--CccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHH
Q 026051 151 GAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TVT--ELPFFASKVRLGRAGIEEIYS-LGPLNEYERAGL 224 (244)
Q Consensus 151 ~~g~~~~-s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~-~~~--~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l 224 (244)
|+++| ++|+++++++++|+++.+ ++.++||| +++| +|+ +++|||+||+||++|++++++ + +|+++|+++|
T Consensus 234 --G~t~~~~~a~a~~~iv~ail~~~~-~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l 309 (323)
T TIGR01759 234 --GASSAASAANAAIDHVRDWVTGTP-EGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKL 309 (323)
T ss_pred --CCcchHHHHHHHHHHHHHHHcCCC-CCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHH
Confidence 78889 477999999999999631 16799998 7888 884 689999999999999999999 7 9999999999
Q ss_pred HHHHHHHHHHHHHh
Q 026051 225 EKAKKELAGSIQKG 238 (244)
Q Consensus 225 ~~s~~~l~~~~~~~ 238 (244)
++|++.|+++++++
T Consensus 310 ~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 310 DATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
No 12
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3.2e-58 Score=406.11 Aligned_cols=227 Identities=33% Similarity=0.558 Sum_probs=213.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||||+|.|++||++|+|++..|++++++++++|.+++|++++|++|||+| +||+++++.+|+|++||||+ |.
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~ 145 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGV 145 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccc
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 69
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CCChhHHHHHHHHHhcCcceeeeccCCCCc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 154 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~ 154 (244)
|||+||+++||++|++++++|+++||||| |++++|+||++++.+ .+++++++++.++++++|++|++++ |||+
T Consensus 146 lds~R~~~~la~~l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~ 223 (305)
T TIGR01763 146 LDSARFRTFIAMELGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGS 223 (305)
T ss_pred hHHHHHHHHHHHHhCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 99999999999999999999999999999 589999999998765 2444558899999999999999986 6799
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 026051 155 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232 (244)
Q Consensus 155 ~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~ 232 (244)
|+||+|+++++|+++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 224 t~~~~a~~~~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~ 299 (305)
T TIGR01763 224 AYYAPAASVVEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVD 299 (305)
T ss_pred hHHHHHHHHHHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999985 78899998 6788885 7899999999999999999998 999999999999999999
Q ss_pred HHHHH
Q 026051 233 GSIQK 237 (244)
Q Consensus 233 ~~~~~ 237 (244)
+.++.
T Consensus 300 ~~~~~ 304 (305)
T TIGR01763 300 ENCKM 304 (305)
T ss_pred HHHhc
Confidence 88753
No 13
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=4.4e-58 Score=405.97 Aligned_cols=224 Identities=30% Similarity=0.486 Sum_probs=209.3
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||+|+|.|++|||+|+|++.+|++|++++++.+++++|++++|++|||+| ++|+++++++|||++||||+ |.
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC----------CCChhHHHHHHHHHhcCcceeeecc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK 149 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~----------~~~~~~~~~l~~~v~~~~~~ii~~k 149 (244)
||++||+++||+++++++++|+++|||+| |++++|+||++++++ .+.+++++++.++++++|++|++.
T Consensus 145 LDs~R~~~~la~~l~v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~- 222 (306)
T cd05291 145 LDTARLRRALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING- 222 (306)
T ss_pred HHHHHHHHHHHHHHCCCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc-
Confidence 99999999999999999999999999999 589999999998754 123455789999999999999995
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 026051 150 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 227 (244)
Q Consensus 150 ~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s 227 (244)
||+++|++|.++++++++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++|
T Consensus 223 --kg~t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s 296 (306)
T cd05291 223 --KGATYYGIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKS 296 (306)
T ss_pred --cCccHHHHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHH
Confidence 4899999999999999999985 78899998 6788884 6899999999999999999998 9999999999999
Q ss_pred HHHHHHHHH
Q 026051 228 KKELAGSIQ 236 (244)
Q Consensus 228 ~~~l~~~~~ 236 (244)
+++|++.++
T Consensus 297 ~~~l~~~~~ 305 (306)
T cd05291 297 ADIIKENIK 305 (306)
T ss_pred HHHHHHHhh
Confidence 999998775
No 14
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=6.2e-58 Score=409.50 Aligned_cols=226 Identities=23% Similarity=0.387 Sum_probs=210.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||||||.|++|||+|+|++.+|++|++++++.|+++||++++|++|||+| ++|+++++.+|||++||||+ |.
T Consensus 106 aDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd----v~t~~~~k~sg~p~~rviG~gt~ 181 (350)
T PLN02602 106 SDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLSGFPANRVIGSGTN 181 (350)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHHhCCCHHHEEeecch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 79
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC------------CCChhHHHHHHHHHhcCcceeee
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~------------~~~~~~~~~l~~~v~~~~~~ii~ 147 (244)
||++|++++||+++++++++|+++||||| |++++|+||++++++ .+++++++++.++++++|++|++
T Consensus 182 LDs~R~r~~lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~ 260 (350)
T PLN02602 182 LDSSRFRFLIADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK 260 (350)
T ss_pred HHHHHHHHHHHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 589999999998753 13334578999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC---CccEEEEeEEEcCCceEEEccCCCCCHHHHHH
Q 026051 148 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT---ELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 223 (244)
Q Consensus 148 ~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~---~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~ 223 (244)
. ||+|+||+|+++++++++|+++ ++.++|++ +++|+|+ +++|||+||+||++|+++++++ +|+++|+++
T Consensus 261 ~---KG~t~~gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~ 333 (350)
T PLN02602 261 L---KGYTSWAIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAER 333 (350)
T ss_pred c---CCccHHHHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHH
Confidence 5 4899999999999999999996 78999998 5688884 6789999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 026051 224 LEKAKKELAGSIQKG 238 (244)
Q Consensus 224 l~~s~~~l~~~~~~~ 238 (244)
|++|++.|++.++..
T Consensus 334 l~~sa~~l~~~~~~~ 348 (350)
T PLN02602 334 LRKSAKTLWEVQSQL 348 (350)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999888764
No 15
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.1e-58 Score=404.98 Aligned_cols=224 Identities=28% Similarity=0.406 Sum_probs=208.4
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||||||.|++|||+|+|++.+|++|++++++.|++++|++++|++|||+| ++||++++++|+|++||||+ |.
T Consensus 72 adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~ 147 (312)
T cd05293 72 SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCN 147 (312)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 99
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----C-------CChhHHHHHHHHHhcCcceeee
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----S-------LTPTEIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~-------~~~~~~~~l~~~v~~~~~~ii~ 147 (244)
||++|+++++|+++++++++|+++||||| |++++|+||++++++ . .+++++++|.++++++|++|++
T Consensus 148 Ld~~R~~~~la~~l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 226 (312)
T cd05293 148 LDSARFRYLIAERLGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK 226 (312)
T ss_pred HHHHHHHHHHHHHhCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 589999999998864 1 1234578999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 026051 148 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224 (244)
Q Consensus 148 ~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l 224 (244)
. ||+|+||+|+++++++++|+++ ++.++|++ ++++.|+ ++++||+||+||++|+++++++ +|+++|+++|
T Consensus 227 ~---kg~t~~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l 299 (312)
T cd05293 227 L---KGYTSWAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKL 299 (312)
T ss_pred h---cCCchHHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHH
Confidence 5 4899999999999999999985 77899998 5677773 6899999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHH
Q 026051 225 EKAKKELAGSIQ 236 (244)
Q Consensus 225 ~~s~~~l~~~~~ 236 (244)
++|++.|++.++
T Consensus 300 ~~s~~~i~~~~~ 311 (312)
T cd05293 300 QKSADTLWEVQK 311 (312)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 16
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2e-57 Score=403.29 Aligned_cols=227 Identities=28% Similarity=0.382 Sum_probs=207.8
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCC-CCCCCeEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGT-YDPKRLLGVT 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~~-~~~~~viG~t 78 (244)
||+||+|||.|++|||+|+|++..|++|+++++++|++++ |++++|++|||+| +||+++++.+| +|++||||+|
T Consensus 77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~vig~t 152 (323)
T cd00704 77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN----TNALIALKNAPNLPPKNFTALT 152 (323)
T ss_pred CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEee
Confidence 7999999999999999999999999999999999999996 9999999999999 99999999999 5999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCCC---------CChh-HHHHHHHHHhcCcceeee
Q 026051 79 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSCS---------LTPT-EIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~~---------~~~~-~~~~l~~~v~~~~~~ii~ 147 (244)
.|||+|||++||++|+++|++|+ ++|||||| ++++|+||++++.+. ++++ ..++|.+++++++++|++
T Consensus 153 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~ 231 (323)
T cd00704 153 RLDHNRAKAQVARKLGVRVSDVKNVIIWGNHS-NTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK 231 (323)
T ss_pred HHHHHHHHHHHHHHhCcCHHHceeeeEEeccc-CceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh
Confidence 99999999999999999999996 68999995 799999999987641 3222 257899999999999999
Q ss_pred ccCCCCchhHH-HHHHHHHHHHHHHhccCCCC--Ceeeee-EecCCC-C--CccEEEEeEEEcCCceEEEccCCCCCHHH
Q 026051 148 AKTGAGSATLS-MAYAAAKFADACLRGLRGDA--GVIECA-YVASTV-T--ELPFFASKVRLGRAGIEEIYSLGPLNEYE 220 (244)
Q Consensus 148 ~k~~~g~~~~s-~a~a~~~~i~ai~~~~~~~~--~~~~~~-~~~~~~-~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E 220 (244)
.| |+++|+ +|+++++++++|+++ ++ .++||| +++|+| + +++|||+||+||++||++++++ +|+++|
T Consensus 232 ~k---g~t~~~~~a~a~~~iv~ail~~---~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E 304 (323)
T cd00704 232 KR---GASSAASAAKAIADHVKDWLFG---TPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWL 304 (323)
T ss_pred cc---CcchhHHHHHHHHHHHHHHHhC---CCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHH
Confidence 65 788886 699999999999996 55 799998 778888 4 6899999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026051 221 RAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 221 ~~~l~~s~~~l~~~~~~~~ 239 (244)
+++|++|++.|+++.+.++
T Consensus 305 ~~~l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 305 REKLKATEEELIEEKEIAL 323 (323)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 9999999999999988764
No 17
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=2e-57 Score=403.22 Aligned_cols=231 Identities=21% Similarity=0.292 Sum_probs=209.7
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVT 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~-~~~~~~viG~t 78 (244)
|||||||||.|++|||+|+|++..|++|+++++++|++|+ |++++|++|||+| +|||++++.+ |||++||||+|
T Consensus 81 aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~t 156 (326)
T PRK05442 81 ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN----TNALIAMKNAPDLPAENFTAMT 156 (326)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHHHEEeee
Confidence 7999999999999999999999999999999999999988 7999999999999 9999999999 99999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCcceee-EeccCCCceeeeccccCCCCC-----CCChhH--HHHHHHHHhcCcceeeeccC
Q 026051 79 MLDVVRANTFVAEVLGLDPREVDVP-VVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAKT 150 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~~~-viG~h~g~~~vp~~s~~~~~~-----~~~~~~--~~~l~~~v~~~~~~ii~~k~ 150 (244)
.|||+|||++||++|+++|++|+++ |||||| ++++|+||++++++ .+++.+ +++|.++++++|++|++.
T Consensus 157 ~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-- 233 (326)
T PRK05442 157 RLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA-- 233 (326)
T ss_pred HHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC--
Confidence 9999999999999999999999986 589995 89999999998875 234433 568999999999999995
Q ss_pred CCCchhHHHHHH-HHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEcc-CCCCCHHHHHHHH
Q 026051 151 GAGSATLSMAYA-AAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYS-LGPLNEYERAGLE 225 (244)
Q Consensus 151 ~~g~~~~s~a~a-~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~ 225 (244)
||+++|++|.+ +++++++|+++.+ ++.++|+| +++|+|+ +++|||+||++| +|+++++. + +|+++|+++|+
T Consensus 234 -kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~ 309 (326)
T PRK05442 234 -RGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKID 309 (326)
T ss_pred -cCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHH
Confidence 47899999999 5999999998521 57799998 5688884 789999999999 99999966 6 99999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q 026051 226 KAKKELAGSIQKGVSFV 242 (244)
Q Consensus 226 ~s~~~l~~~~~~~~~~~ 242 (244)
+|+++|+++.+.+..++
T Consensus 310 ~s~~~l~~~~~~~~~~~ 326 (326)
T PRK05442 310 ATLAELEEERDAVKHLL 326 (326)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999998877553
No 18
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2.2e-57 Score=400.65 Aligned_cols=231 Identities=22% Similarity=0.259 Sum_probs=207.7
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCC-cEEEEecCCCCCcHHHHHHHH-HHhCCCCCCCeEEe-
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAAEVF-KKVGTYDPKRLLGV- 77 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~-~~iiv~tNPvd~~~~ilt~~~-~~~~~~~~~~viG~- 77 (244)
|||||||||.||+|||+|+|++..|++|+++++++|++++|+ +++|++|||+| +||+++ ++.+|||++ +||+
T Consensus 61 aDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvD----v~t~v~~~~~sg~p~~-vig~g 135 (313)
T TIGR01756 61 IDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVN----TNCLVAMLHAPKLSAE-NFSSL 135 (313)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHH-HEEec
Confidence 799999999999999999999999999999999999999955 88999999999 899999 699999998 9999
Q ss_pred chhhHHHHHHHHHHHhCCCCCccee-eEeccCCCceeeeccccCCC--CCC-------CChh-HHHHHHHHHhcCcceee
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKP--SCS-------LTPT-EIDYLTDRIQNGGTEVV 146 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~~-~viG~h~g~~~vp~~s~~~~--~~~-------~~~~-~~~~l~~~v~~~~~~ii 146 (244)
|.|||+|||++||++++++|++|+. +||||| |++++|+||++++ ++. ++++ .++++.++++++|++|+
T Consensus 136 t~LDsaR~r~~la~~l~v~~~~V~~~~V~GeH-G~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii 214 (313)
T TIGR01756 136 CMLDHNRAVSRIASKLKVPVDHIYHVVVWGNH-AESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKIL 214 (313)
T ss_pred ccHHHHHHHHHHHHHhCcChhheeeeEEEECC-CCceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999975 599999 5899999999988 541 2231 35789999999999999
Q ss_pred eccCCCCchhHHHH-HHHHHHHHHHHhccCCCCCeeeeeE-ec-C-CCC--CccEEEEeEEEcCCceEEEcc-CCCCCHH
Q 026051 147 EAKTGAGSATLSMA-YAAAKFADACLRGLRGDAGVIECAY-VA-S-TVT--ELPFFASKVRLGRAGIEEIYS-LGPLNEY 219 (244)
Q Consensus 147 ~~k~~~g~~~~s~a-~a~~~~i~ai~~~~~~~~~~~~~~~-~~-~-~~~--~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~ 219 (244)
+. ||+|+|+++ .++++++++|+++.+ ++.++|||. ++ + +|+ +++|||+||++|++|++++++ + +|+++
T Consensus 215 ~~---kg~t~~~~~a~ai~~iv~ail~~~~-~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~ 289 (313)
T TIGR01756 215 EM---RGFTSAASPVKASLQHMKAWLFGTR-PGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPW 289 (313)
T ss_pred hC---cCCcchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHH
Confidence 95 479999988 699999999999532 568999984 65 3 785 589999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 026051 220 ERAGLEKAKKELAGSIQKGVSFV 242 (244)
Q Consensus 220 E~~~l~~s~~~l~~~~~~~~~~~ 242 (244)
|+++|++|+++|+++.+.+++.+
T Consensus 290 E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 290 LKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
No 19
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=5.1e-57 Score=406.40 Aligned_cols=232 Identities=22% Similarity=0.278 Sum_probs=210.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-c
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t 78 (244)
|||||||||.||+|||+|+|++..|++|++++++.|++++ |++++||+|||+| +||+++++.+|+|++||||+ |
T Consensus 121 aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD----v~t~v~~k~sg~~~~rviG~gT 196 (387)
T TIGR01757 121 ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN----TNALIAMKNAPNIPRKNFHALT 196 (387)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH----HHHHHHHHHcCCCcccEEEecc
Confidence 7999999999999999999999999999999999999987 9999999999999 99999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCC-----CCChhH--HHHHHHHHhcCcceeeeccC
Q 026051 79 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAKT 150 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~--~~~l~~~v~~~~~~ii~~k~ 150 (244)
.|||+|||++||++|++++++|+ ++|||||| ++++|+||++++.+ .+++.+ +++|.++++++|++|++.|
T Consensus 197 ~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~K- 274 (387)
T TIGR01757 197 RLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKW- 274 (387)
T ss_pred hhHHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhcc-
Confidence 99999999999999999999996 99999995 89999999998764 232323 5799999999999999954
Q ss_pred CCCchhH-HHHHHHHHHHHHHHhccCCCCCeeeee-EecCC-CC--CccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHH
Q 026051 151 GAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAST-VT--ELPFFASKVRLGRAGIEEIY-SLGPLNEYERAGL 224 (244)
Q Consensus 151 ~~g~~~~-s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~-~~--~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E~~~l 224 (244)
|+++| ++|.++++++++|+.+. +++.++|+| +++|+ |+ +++|||+||++|++|+++++ ++ +|+++|+++|
T Consensus 275 --G~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l 350 (387)
T TIGR01757 275 --GRSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERI 350 (387)
T ss_pred --CchhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHH
Confidence 56666 99999999999999432 367899998 56885 85 78999999999999999996 88 9999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 026051 225 EKAKKELAGSIQKGVSFV 242 (244)
Q Consensus 225 ~~s~~~l~~~~~~~~~~~ 242 (244)
++|+++|+++.+.+++.+
T Consensus 351 ~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 351 RKSEDELLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999888755
No 20
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=7.6e-57 Score=398.81 Aligned_cols=226 Identities=28% Similarity=0.466 Sum_probs=211.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||||||.|++|||+|+|++..|++|++++++.+++++|++++|++|||+| ++++++++.+|+|++||||+ |.
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d----~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHH----HHHHHHHHHhCCCHHHEeecCch
Confidence 79999999999999999999999999999999999999999999999999999 89999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----------CCChhHHHHHHHHHhcCcceeeec
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVVEA 148 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----------~~~~~~~~~l~~~v~~~~~~ii~~ 148 (244)
|||+||++++|++++++|++|+++||||| |++++|+||++++++ .+++++++++.++++++|+++++.
T Consensus 150 LDs~R~~~~la~~l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~ 228 (315)
T PRK00066 150 LDSARFRYMLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK 228 (315)
T ss_pred HHHHHHHHHHHHHhCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 589999999998764 134456889999999999999995
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 026051 149 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226 (244)
Q Consensus 149 k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 226 (244)
||+++||+|+++++++++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++
T Consensus 229 ---kg~t~~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~ 301 (315)
T PRK00066 229 ---KGATYYGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAH 301 (315)
T ss_pred ---CCeehHHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHH
Confidence 4799999999999999999985 77899998 6788884 7899999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHh
Q 026051 227 AKKELAGSIQKG 238 (244)
Q Consensus 227 s~~~l~~~~~~~ 238 (244)
|+++|++.++..
T Consensus 302 s~~~l~~~~~~~ 313 (315)
T PRK00066 302 SADVLKEIMDEA 313 (315)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 21
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.6e-56 Score=374.87 Aligned_cols=243 Identities=73% Similarity=1.138 Sum_probs=234.7
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
||+|||-||.||||||+|+|||..|+-|+++++..+.++||++++.++|||+|+++|++++++++..-|+|+|++|+|.|
T Consensus 97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL 176 (345)
T KOG1494|consen 97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 176 (345)
T ss_pred CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCC-CcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHH
Q 026051 81 DVVRANTFVAEVLGLDP-REVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSM 159 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~-~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~ 159 (244)
|..|+++++++.++++| ++++++|||+|.|.|++|++|+..+...+++++++.|+.+++.+|.|+++.|.|+||+.+|+
T Consensus 177 DvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSM 256 (345)
T KOG1494|consen 177 DVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSM 256 (345)
T ss_pred hhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhH
Confidence 99999999999999999 55999999999999999999999987788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCeeeeeEecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 026051 160 AYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 160 a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 239 (244)
|+|.++++.+++++++|+..+..|+|+.+...+-.||+.|+++|++|++++..+++|+++|+++|+.+..+||+.|++++
T Consensus 257 AyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv 336 (345)
T KOG1494|consen 257 AYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGV 336 (345)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999877654567999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 026051 240 SFVR 243 (244)
Q Consensus 240 ~~~~ 243 (244)
+|++
T Consensus 337 ~F~~ 340 (345)
T KOG1494|consen 337 TFVK 340 (345)
T ss_pred HHHh
Confidence 9976
No 22
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=8.7e-57 Score=396.49 Aligned_cols=223 Identities=31% Similarity=0.481 Sum_probs=208.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||+|||.|++|||+|++++.+|+++++++++.|+++||++++|++|||+| ++|+++++++|+|++||+|+ |.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~ 142 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTL 142 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCc
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CC--ChhHHHHHHHHHhcCcceeeeccCCC
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SL--TPTEIDYLTDRIQNGGTEVVEAKTGA 152 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~--~~~~~~~l~~~v~~~~~~ii~~k~~~ 152 (244)
|||+||++++|+++++++++|+++|+||| |++++|+||++++++ .+ ++.+++++.+++++++++|++. |
T Consensus 143 lDs~r~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---k 218 (300)
T cd00300 143 LDSARFRSLLAEKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---K 218 (300)
T ss_pred HHHHHHHHHHHHHhCCCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---c
Confidence 99999999999999999999999999999 589999999998764 12 2345789999999999999995 4
Q ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 026051 153 GSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230 (244)
Q Consensus 153 g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~ 230 (244)
|+++||+|+++++++++|+++ ++.++|++ +++++|+ +++|||+||++|++|+++++++ +|+++|+++|++|+++
T Consensus 219 g~t~~~~a~a~~~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~ 294 (300)
T cd00300 219 GATNYGIATAIADIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEA 294 (300)
T ss_pred CcchHHHHHHHHHHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHH
Confidence 899999999999999999995 78899998 5688884 6899999999999999999998 9999999999999999
Q ss_pred HHHHH
Q 026051 231 LAGSI 235 (244)
Q Consensus 231 l~~~~ 235 (244)
|++.+
T Consensus 295 l~~~~ 299 (300)
T cd00300 295 LKEVL 299 (300)
T ss_pred HHHHh
Confidence 99865
No 23
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2e-56 Score=408.00 Aligned_cols=232 Identities=22% Similarity=0.286 Sum_probs=210.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHh-hCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-c
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK-CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~-~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t 78 (244)
|||||||||.||+|||+|+|++..|++|++++++.|++ ++|++++||+|||+| +||+++++.+|+|++||||+ |
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD----v~t~v~~k~sg~~~~rViGtgT 252 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN----TNALICLKNAPNIPAKNFHALT 252 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH----HHHHHHHHHcCCCCcceEEeec
Confidence 79999999999999999999999999999999999999 589999999999999 99999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCC-----CCChhH--HHHHHHHHhcCcceeeeccC
Q 026051 79 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAKT 150 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~--~~~l~~~v~~~~~~ii~~k~ 150 (244)
.|||+||+++||+++++++++|+ ++|||||| +++||+||++++++ .+++.+ +++|.++++++|++|++.|
T Consensus 253 ~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k- 330 (444)
T PLN00112 253 RLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW- 330 (444)
T ss_pred cHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhcc-
Confidence 99999999999999999999995 69999995 89999999998865 233334 5789999999999999954
Q ss_pred CCCchhH-HHHHHHHHHHHHHHhccCCCCCeeeee-EecC-CCC--CccEEEEeEEEcCCceEEEc-cCCCCCHHHHHHH
Q 026051 151 GAGSATL-SMAYAAAKFADACLRGLRGDAGVIECA-YVAS-TVT--ELPFFASKVRLGRAGIEEIY-SLGPLNEYERAGL 224 (244)
Q Consensus 151 ~~g~~~~-s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~-~~~--~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E~~~l 224 (244)
|+++| ++|.++++++++|+++. +++.++|++ +++| +|+ +++|||+||++|++|+++++ ++ +|+++|+++|
T Consensus 331 --G~t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l 406 (444)
T PLN00112 331 --GRSSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERI 406 (444)
T ss_pred --CchhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHH
Confidence 66666 99999999999999432 378899998 6788 485 78999999999999999999 67 9999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 026051 225 EKAKKELAGSIQKGVSFV 242 (244)
Q Consensus 225 ~~s~~~l~~~~~~~~~~~ 242 (244)
++|+++|.++.+.+...+
T Consensus 407 ~~Sa~~L~~e~~~~~~~~ 424 (444)
T PLN00112 407 KKSEAELLAEKRCVAHLT 424 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988876654
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-55 Score=391.82 Aligned_cols=231 Identities=32% Similarity=0.529 Sum_probs=215.3
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||+|+|.+++|||+|.|++..|+++++++++.|+++||++++|++|||+| ++++++++.+++|++||+|+ |.
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~ 149 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGV 149 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 59
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC----------CCChhHHHHHHHHHhcCcceeeecc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTEVVEAK 149 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~----------~~~~~~~~~l~~~v~~~~~~ii~~k 149 (244)
||++||+++||++++++|++|+++|+||| |++++|+||++++++ .+++++++++.++++++|++|++++
T Consensus 150 lds~R~~~~la~~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~ 228 (319)
T PTZ00117 150 LDSSRFRCNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL 228 (319)
T ss_pred HHHHHHHHHHHHHhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999 589999999998754 1455668899999999999999975
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHH
Q 026051 150 TGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKA 227 (244)
Q Consensus 150 ~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s 227 (244)
|||+++||+|+++++++++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++|
T Consensus 229 -~kg~t~~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s 303 (319)
T PTZ00117 229 -KKGSAFFAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKS 303 (319)
T ss_pred -CCCChHHHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence 67999999999999999999995 78899998 6788885 5899999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 026051 228 KKELAGSIQKGVSF 241 (244)
Q Consensus 228 ~~~l~~~~~~~~~~ 241 (244)
++.|++.+++...+
T Consensus 304 ~~~l~~~~~~~~~~ 317 (319)
T PTZ00117 304 IESIQELTQKAKAL 317 (319)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
No 25
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-55 Score=391.34 Aligned_cols=227 Identities=33% Similarity=0.595 Sum_probs=213.0
Q ss_pred CcEEEEcCCCCCCCCC-----CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 026051 1 MDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL 75 (244)
Q Consensus 1 aDiviitag~~~~~g~-----~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~vi 75 (244)
||+||+|+|.|++||+ +|++++..|+++++++++.|++++|++++|++|||+| ++++.+++.+++|++||+
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rvi 150 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVC 150 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEE
Confidence 7999999999999999 9999999999999999999999999999999999999 999999999999999999
Q ss_pred Ee-chhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC----------CCChhHHHHHHHHHhcCcce
Q 026051 76 GV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC----------SLTPTEIDYLTDRIQNGGTE 144 (244)
Q Consensus 76 G~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~----------~~~~~~~~~l~~~v~~~~~~ 144 (244)
|+ |.||++|+++.||+++++++++|+++|+||| |++++|+||++++.+ .++++++++|.++++++|++
T Consensus 151 Glgt~lds~R~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 229 (321)
T PTZ00082 151 GMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKE 229 (321)
T ss_pred EecCcccHHHHHHHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHH
Confidence 99 6999999999999999999999999999999 589999999998754 14555688999999999999
Q ss_pred eeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 026051 145 VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222 (244)
Q Consensus 145 ii~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 222 (244)
|+++| |||+|+||+|.++++++++|+++ ++.++||| +++++|+ +++|||+||+||++|+++++++ +|+++|++
T Consensus 230 i~~~~-gkg~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~ 304 (321)
T PTZ00082 230 IVDLL-GTGSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQK 304 (321)
T ss_pred HHhhc-CCCccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHH
Confidence 99986 67999999999999999999985 88999998 6788885 6899999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHH
Q 026051 223 GLEKAKKELAGSIQK 237 (244)
Q Consensus 223 ~l~~s~~~l~~~~~~ 237 (244)
+|++|++.|++.++.
T Consensus 305 ~l~~sa~~i~~~~~~ 319 (321)
T PTZ00082 305 KFDESIKEVKRLEAL 319 (321)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2e-55 Score=389.11 Aligned_cols=225 Identities=29% Similarity=0.482 Sum_probs=210.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||+|+|.|+++|++|.+++..|+++++++++.+++++|+|+++++|||+| ++++++++.+|||++||||+ |.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~ 143 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTV 143 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 89
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC------------CCChhHHHHHHHHHhcCcceeee
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC------------SLTPTEIDYLTDRIQNGGTEVVE 147 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~------------~~~~~~~~~l~~~v~~~~~~ii~ 147 (244)
|||+||+++||+++++++++|+++||||| |++++|+||++++++ .++++++++|.++++++|++|++
T Consensus 144 LDs~R~~~~la~~~~v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~ 222 (308)
T cd05292 144 LDTARFRYLLGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE 222 (308)
T ss_pred hhHHHHHHHHHHHhCCCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 589999999998754 13335588999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 026051 148 AKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 225 (244)
Q Consensus 148 ~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 225 (244)
.| |+|+||+|+++++++++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +||++|+++|+
T Consensus 223 ~k---g~t~~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~ 295 (308)
T cd05292 223 RK---GATYYAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALR 295 (308)
T ss_pred cC---CccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHH
Confidence 64 799999999999999999985 78899998 6788885 6899999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHH
Q 026051 226 KAKKELAGSIQK 237 (244)
Q Consensus 226 ~s~~~l~~~~~~ 237 (244)
+|++.|++.++.
T Consensus 296 ~s~~~i~~~~~~ 307 (308)
T cd05292 296 ASAEVLKEAIES 307 (308)
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 27
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=7.6e-55 Score=386.88 Aligned_cols=230 Identities=24% Similarity=0.299 Sum_probs=206.9
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-c
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t 78 (244)
||+||+|||.|+++|++|++++..|++|++++++.|++++ |++++|++|||+| +||+++++.+|++|++|||+ |
T Consensus 76 aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~~~sg~~~~~vig~gt 151 (324)
T TIGR01758 76 VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN----TNALVLSNYAPSIPPKNFSALT 151 (324)
T ss_pred CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCcceEEEee
Confidence 7999999999999999999999999999999999999996 9999999999999 99999999998888889999 8
Q ss_pred hhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCC-CC--------CChhH--HHHHHHHHhcCcceee
Q 026051 79 MLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS-CS--------LTPTE--IDYLTDRIQNGGTEVV 146 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~-~~--------~~~~~--~~~l~~~v~~~~~~ii 146 (244)
.|||+|||++||++++++|++|+ ++|||||| ++++|+||++++. +. +++++ ++++.+++++++++|+
T Consensus 152 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii 230 (324)
T TIGR01758 152 RLDHNRALAQVAERAGVPVSDVKNVIIWGNHS-STQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAII 230 (324)
T ss_pred ehHHHHHHHHHHHHhCCChhhceEeEEEECCC-CCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHH
Confidence 99999999999999999999997 69999995 7999999999887 41 22222 5789999999999999
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCC-CC--CccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 026051 147 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVAST-VT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222 (244)
Q Consensus 147 ~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~-~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 222 (244)
+.| +|++.||+|.++++++++|+++. +++.++||| +++|+ |+ +++|||+||++|++|++.+.++ +|+++|++
T Consensus 231 ~~k--~~~t~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~ 306 (324)
T TIGR01758 231 RAR--KLSSALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRK 306 (324)
T ss_pred hcc--CCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHH
Confidence 975 26899999999999999999432 378899998 66888 84 6899999999997777777778 89999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026051 223 GLEKAKKELAGSIQKGV 239 (244)
Q Consensus 223 ~l~~s~~~l~~~~~~~~ 239 (244)
+|++|++.|+++++.++
T Consensus 307 ~l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 307 KLALTAKELEEERDEAL 323 (324)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998764
No 28
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.7e-55 Score=386.22 Aligned_cols=228 Identities=22% Similarity=0.301 Sum_probs=207.5
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGVT 78 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~-~~~~~~viG~t 78 (244)
|||||||||.|++|||+|+|++..|++|++++++.|++++ |++++|++|||+| +||+++++.+ +||++||+|+|
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~ViG~t 154 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN----TNALIAMKNAPDIPPDNFTAMT 154 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH----HHHHHHHHHcCCCChHheEEeh
Confidence 7999999999999999999999999999999999999999 5999999999999 9999999999 59999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCccee-eEeccCCCceeeeccccCCCCC-----CCChhH--HHHHHHHHhcCcceeeeccC
Q 026051 79 MLDVVRANTFVAEVLGLDPREVDV-PVVGGHAGVTILPLLSQVKPSC-----SLTPTE--IDYLTDRIQNGGTEVVEAKT 150 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~~-~viG~h~g~~~vp~~s~~~~~~-----~~~~~~--~~~l~~~v~~~~~~ii~~k~ 150 (244)
.||++||++.+|+++++++++|++ +|||+|| ++++|+||++.+.+ .+++.+ +++|.+++++++++|++.
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~-- 231 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA-- 231 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC--
Confidence 999999999999999999999997 5699994 89999999998764 244443 579999999999999995
Q ss_pred CCCchhHHHH-HHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 026051 151 GAGSATLSMA-YAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226 (244)
Q Consensus 151 ~~g~~~~s~a-~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 226 (244)
||+++|++| +++++++++|+++.+ ++.++|++ +++|+|+ +++|||+||++|++|+++++++ +|+++|+++|++
T Consensus 232 -kG~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~ 308 (322)
T cd01338 232 -RGASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDA 308 (322)
T ss_pred -cCCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHH
Confidence 478999999 599999999999632 14799998 5688884 7899999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHh
Q 026051 227 AKKELAGSIQKG 238 (244)
Q Consensus 227 s~~~l~~~~~~~ 238 (244)
|++.|+++.++.
T Consensus 309 s~~~l~~~~~~~ 320 (322)
T cd01338 309 TLAELLEEREAV 320 (322)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 29
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.2e-54 Score=380.77 Aligned_cols=229 Identities=23% Similarity=0.333 Sum_probs=206.5
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHh-CCCCCCCeEEe-
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKV-GTYDPKRLLGV- 77 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~-~~~~~~~viG~- 77 (244)
||+||+|||.++++|++|.+++..|++|++++++.|++++ |++++|++|||+| +||+++++. +++|+++ ||+
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~~~~~~~~~-ig~g 153 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN----TNALILLKYAPSIPKEN-FTAL 153 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH----HHHHHHHHHcCCCCHHH-EEee
Confidence 7999999999999999999999999999999999999997 7999999999999 999999999 5787777 888
Q ss_pred chhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCC----C-----CCChhH--HHHHHHHHhcCccee
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPS----C-----SLTPTE--IDYLTDRIQNGGTEV 145 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~----~-----~~~~~~--~~~l~~~v~~~~~~i 145 (244)
|.||++||+++||++|++++++|+ .+|||||| ++++|+||++++. + .+++++ +++|.+++++++++|
T Consensus 154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG-~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I 232 (325)
T cd01336 154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV 232 (325)
T ss_pred ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCC-CCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence 899999999999999999999998 55999995 7999999999886 4 122322 579999999999999
Q ss_pred eeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 026051 146 VEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222 (244)
Q Consensus 146 i~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 222 (244)
+++| +|+|+||+|.++++++++|+++. +++.++|++ +++|+|+ +++|||+||+||++|+++++++ +|+++|++
T Consensus 233 i~~~--~g~t~~~~a~~~~~i~~ail~~~-~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~ 308 (325)
T cd01336 233 IKAR--KLSSAMSAAKAICDHVHDWWFGT-PEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSRE 308 (325)
T ss_pred HHcc--ccchHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHH
Confidence 9964 47999999999999999999852 136799998 5788884 7899999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026051 223 GLEKAKKELAGSIQKGV 239 (244)
Q Consensus 223 ~l~~s~~~l~~~~~~~~ 239 (244)
+|++|++.|+++++.++
T Consensus 309 ~l~~s~~~l~~e~~~~~ 325 (325)
T cd01336 309 KIDATAKELVEEKETAL 325 (325)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999998764
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.3e-53 Score=376.42 Aligned_cols=225 Identities=37% Similarity=0.610 Sum_probs=211.2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||+|+|.|+++|++|.+++..|++++++++++|.+++|++++|++|||+| ++++++++++|+|++||+|+ |.
T Consensus 67 ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~ 142 (300)
T cd01339 67 SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGV 142 (300)
T ss_pred CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 59
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CCChhHHHHHHHHHhcCcceeeeccCCCCc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 154 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~ 154 (244)
||++||+++||++|++++++|+++|+|+| |++++|+||++++.+ .+++++++++.+++++++++|++.| |||+
T Consensus 143 lds~r~~~~la~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~ 220 (300)
T cd01339 143 LDSARFRYFIAEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGS 220 (300)
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCc
Confidence 99999999999999999999999999999 589999999998864 2445568899999999999999987 6799
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 026051 155 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232 (244)
Q Consensus 155 ~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~ 232 (244)
++|++|+++++|+++|+++ ++.++|++ +++++|+ +++|||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus 221 t~~~~a~~~~~i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~ 296 (300)
T cd01339 221 AYYAPAAAIAEMVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVK 296 (300)
T ss_pred hhHHHHHHHHHHHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999985 78999998 6788884 6899999999999999999998 999999999999999999
Q ss_pred HHH
Q 026051 233 GSI 235 (244)
Q Consensus 233 ~~~ 235 (244)
+.+
T Consensus 297 ~~~ 299 (300)
T cd01339 297 ELI 299 (300)
T ss_pred HHh
Confidence 865
No 31
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.8e-53 Score=376.55 Aligned_cols=224 Identities=28% Similarity=0.474 Sum_probs=207.4
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
|||||+|+|.|++||++|.+++..|+++++++++.|++++|++++||++||+| ++|+++++.+|+|++||||+ |.
T Consensus 73 aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd----~~t~~~~~~~g~~~~~viG~gt~ 148 (309)
T cd05294 73 SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD----VMTYKALKESGFDKNRVFGLGTH 148 (309)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCCHHHEeeccch
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 79
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CC--ChhHHHHHHHHHhcCcceeeeccCCC
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SL--TPTEIDYLTDRIQNGGTEVVEAKTGA 152 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~--~~~~~~~l~~~v~~~~~~ii~~k~~~ 152 (244)
||++||+++||++|++++++|+++|+||| |++++|+||++++.+ .+ .+.+++++.++++++|++|++.|
T Consensus 149 LDs~R~~~~la~~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k--- 224 (309)
T cd05294 149 LDSLRFKVAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK--- 224 (309)
T ss_pred HHHHHHHHHHHHHHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999 589999999998864 12 24457889999999999999965
Q ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCC-C-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHH
Q 026051 153 GSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTV-T-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229 (244)
Q Consensus 153 g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~-~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~ 229 (244)
|+++||+|.++++++++|+++ ++.++|++ +.+++| + +++++|+||+||++|+++++++ +|+++|+++|++|++
T Consensus 225 g~t~~~~a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~ 300 (309)
T cd05294 225 GGSEYGPASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAE 300 (309)
T ss_pred CCchhhHHHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHH
Confidence 678899999999999999985 78899998 467776 3 4789999999999999999998 899999999999999
Q ss_pred HHHHHHH
Q 026051 230 ELAGSIQ 236 (244)
Q Consensus 230 ~l~~~~~ 236 (244)
.|++.++
T Consensus 301 ~i~~~~~ 307 (309)
T cd05294 301 IVKKYTR 307 (309)
T ss_pred HHHHHHh
Confidence 9998765
No 32
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.5e-52 Score=380.05 Aligned_cols=226 Identities=15% Similarity=0.133 Sum_probs=202.2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCC--CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCCeEEe
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP--KAIVNLISNPVNSTVPIAAEVFKKVG-TYDPKRLLGV 77 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p--~~~iiv~tNPvd~~~~ilt~~~~~~~-~~~~~~viG~ 77 (244)
|||||+|||.||+|||+|.|+++.|++|++++++.|++++| ++++|++|||+| ++|+++++.+ |||++||+|+
T Consensus 200 aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~apgiP~~rVig~ 275 (452)
T cd05295 200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAPSIPRKNIIAV 275 (452)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEe
Confidence 79999999999999999999999999999999999999999 899999999999 8888888898 9999999999
Q ss_pred chhhHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCC-----------------CCChhH--HHHHHHH
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC-----------------SLTPTE--IDYLTDR 137 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~-----------------~~~~~~--~~~l~~~ 137 (244)
+.|||+||+++||+++|+++++|+ ++|||||| +++||+||++++++ .+.+++ .+++.++
T Consensus 276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~ 354 (452)
T cd05295 276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT 354 (452)
T ss_pred cchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence 778899999999999999999995 79999995 89999999998853 122333 3578888
Q ss_pred HhcCcceeeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCC
Q 026051 138 IQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLG 214 (244)
Q Consensus 138 v~~~~~~ii~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~ 214 (244)
++++++ + +||+|+||+|.|+++++++|+++.+ ++.++|++ +++|+|+ ++++||+||++|++|++.+.++
T Consensus 355 v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L- 426 (452)
T cd05295 355 LKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL- 426 (452)
T ss_pred HHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-
Confidence 998888 3 4589999999999999999999631 25799998 6788884 7899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhh
Q 026051 215 PLNEYERAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 215 ~L~~~E~~~l~~s~~~l~~~~~~~~ 239 (244)
+|+++|+++|++|+++|.++.+.++
T Consensus 427 ~L~e~E~~kL~~S~~eL~~E~~~~~ 451 (452)
T cd05295 427 ELSEILREVLKRITSDLIQEKLVAL 451 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999887653
No 33
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=7.5e-52 Score=366.28 Aligned_cols=227 Identities=36% Similarity=0.610 Sum_probs=210.9
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
||+||+++|.|+++|++|.|++.+|+++++++++.|++++|++++|++|||+| ++|+++++++|+|++||||+ |.
T Consensus 71 aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~ 146 (307)
T PRK06223 71 SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGV 146 (307)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCC
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999 69
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----CCChhHHHHHHHHHhcCcceeeeccCCCCc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----SLTPTEIDYLTDRIQNGGTEVVEAKTGAGS 154 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~ 154 (244)
|||+||+++||++++++|++|+++|+|+| |++++|+||++++.+ .++++.+++|.++++++++++++.+ +||+
T Consensus 147 lds~r~~~~la~~l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~ 224 (307)
T PRK06223 147 LDSARFRTFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGS 224 (307)
T ss_pred cHHHHHHHHHHHHhCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCC
Confidence 99999999999999999999999999999 589999999998754 2455557899999999999999974 4689
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 026051 155 ATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232 (244)
Q Consensus 155 ~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~ 232 (244)
+.|++|.++++++++++.+ ++.++|++ +.+|+|+ ++++||+||+||++|+++++++ +|+++|+++|++|+++|+
T Consensus 225 t~~~~A~~~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~ 300 (307)
T PRK06223 225 AYYAPAASIAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVK 300 (307)
T ss_pred hhHHHHHHHHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999985 78899998 5677775 7899999999999999999998 999999999999999999
Q ss_pred HHHHH
Q 026051 233 GSIQK 237 (244)
Q Consensus 233 ~~~~~ 237 (244)
+.++.
T Consensus 301 ~~~~~ 305 (307)
T PRK06223 301 KLIEA 305 (307)
T ss_pred HHHHh
Confidence 98864
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=3.6e-45 Score=317.15 Aligned_cols=189 Identities=30% Similarity=0.490 Sum_probs=177.2
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
||+||+|+|.+++||++|.+++.+|++++++++++|+++||++++|++|||+| ++|+++++++|+|++||||+|.|
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~l 146 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTL 146 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecc
Confidence 79999999999999999999999999999999999999999999999999999 99999999999999999999449
Q ss_pred hHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHHHH
Q 026051 81 DVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a 160 (244)
|+.|+++++|+++++++++|+++|||+|| ++++|+||+++ +|
T Consensus 147 d~~r~~~~la~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~-------------------------------------~a 188 (263)
T cd00650 147 DPIRFRRILAEKLGVDPDDVKVYILGEHG-GSQVPDWSTVR-------------------------------------IA 188 (263)
T ss_pred hHHHHHHHHHHHhCCCccceEEEEEEcCC-CceEeccccch-------------------------------------HH
Confidence 99999999999999999999999999995 78999999863 57
Q ss_pred HHHHHHHHHHHhccCCCCCeeeee-EecCCCC--CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHH
Q 026051 161 YAAAKFADACLRGLRGDAGVIECA-YVASTVT--ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSI 235 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~ 235 (244)
.++++++++|+++ ++.++|++ +.+|.|+ ++++||+||++|++|+++++++ +|+++|+++|++|++.++..+
T Consensus 189 ~~~~~ii~ai~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 189 TSIADLIRSLLND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HHHHHHHHHHHcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence 7999999999985 77899998 5677775 7899999999999999999998 999999999999999999765
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.5e-41 Score=281.61 Aligned_cols=233 Identities=24% Similarity=0.340 Sum_probs=208.9
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 2 Diviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
|+.|+..++||++||+|.|++..|.+|+++.+..+.+|+ |+.+++|++||+++++.++.+ .++.+|.+++-++|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k---~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKK---FAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhh---hCCCCchhcchhhhhh
Confidence 788999999999999999999999999999999999998 899999999999999988866 5679999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcce-eeEeccCCCceeeeccccCCCCC---------CCChhHH--HHHHHHHhcCcceeeec
Q 026051 81 DVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPLLSQVKPSC---------SLTPTEI--DYLTDRIQNGGTEVVEA 148 (244)
Q Consensus 81 d~~R~~~~la~~l~v~~~~v~-~~viG~h~g~~~vp~~s~~~~~~---------~~~~~~~--~~l~~~v~~~~~~ii~~ 148 (244)
|++|+..+||.+++|+.++|+ ++|||+|+ .||+|+..+++++. .+.++.| .++.+.|+++|..+|+.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHS-sTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEecccc-cccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 999999999999999999998 99999997 79999999998753 3556666 58999999999999997
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeee-e-EecCCC--CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHH
Q 026051 149 KTGAGSATLSMAYAAAKFADACLRGLRGDAGVIEC-A-YVASTV--TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224 (244)
Q Consensus 149 k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~-~-~~~~~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l 224 (244)
+ |-|+.+|.|.++++++++|+.+.+ .+.|.+ + +.+|.| |++..||+||++ ++|-|++++..+++++-++++
T Consensus 238 r--k~SSA~SaA~aacDhi~dw~~gTp--eG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km 312 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIRDWWFGTP--EGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKM 312 (332)
T ss_pred h--hhhhhhhHHHhHhhhhhheecCCC--CccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhh
Confidence 5 468889999999999999999753 344544 4 458888 578999999999 679999998879999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 026051 225 EKAKKELAGSIQKGVSFVR 243 (244)
Q Consensus 225 ~~s~~~l~~~~~~~~~~~~ 243 (244)
..++++|+++-+.++..++
T Consensus 313 ~~t~~EL~eEkd~a~~~l~ 331 (332)
T KOG1496|consen 313 DLTAKELKEEKDLAYSCLS 331 (332)
T ss_pred hhhHHHHHHhHHHHHHhhc
Confidence 9999999999999988876
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=1.1e-38 Score=260.52 Aligned_cols=159 Identities=35% Similarity=0.568 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCC-----------CCChhHHHHHHHHHhcCcceee
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSC-----------SLTPTEIDYLTDRIQNGGTEVV 146 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~-----------~~~~~~~~~l~~~v~~~~~~ii 146 (244)
|.|||+||+++||+++|++|++++++|||||| +++||+||++++.+ .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHG-DSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSS-TTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCC-cceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 68999999999999999999999999999995 79999999998753 3666778999999999999999
Q ss_pred eccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee-EecCCCC-Cc--cEEEEeEEEcCCceEEEccCCCCCHHHHH
Q 026051 147 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA-YVASTVT-EL--PFFASKVRLGRAGIEEIYSLGPLNEYERA 222 (244)
Q Consensus 147 ~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~~~~~~~-~~--~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~ 222 (244)
++|+ |+++||+|+++++++++|+++ .+.++|++ +++++|+ .+ +|||+||+||++|++++++.++|+++|++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~---~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~ 154 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKD---ERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE 154 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTT---HTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhc---ccccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence 9873 899999999999999999996 67899998 5688885 34 99999999999999999993389999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 026051 223 GLEKAKKELAGSIQKGVSFV 242 (244)
Q Consensus 223 ~l~~s~~~l~~~~~~~~~~~ 242 (244)
+|++|++.|+++++++++|+
T Consensus 155 ~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 155 KLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 37
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.91 E-value=4.1e-23 Score=189.28 Aligned_cols=221 Identities=19% Similarity=0.234 Sum_probs=160.6
Q ss_pred CcEEEEcCCCCCCCCCCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHH
Q 026051 1 MDIVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 60 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l--------------------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt 60 (244)
||.||++++.+..++++|++. ..+|+++++++++.|+++||+||+|++|||+| ++|
T Consensus 76 adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt 151 (419)
T cd05296 76 ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVT 151 (419)
T ss_pred CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHH
Confidence 799999999999998888885 66888999999999999999999999999999 999
Q ss_pred HHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCCCcceeeEec-cCC---------Cceeeec-c------------
Q 026051 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------GVTILPL-L------------ 117 (244)
Q Consensus 61 ~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~h~---------g~~~vp~-~------------ 117 (244)
+++++.+ +.||||+|..+ .|+++.+|+.+|+++++|+++++| ||- |+..+|. .
T Consensus 152 ~a~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~ 227 (419)
T cd05296 152 EAVLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEG 227 (419)
T ss_pred HHHHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccc
Confidence 9999887 67999998775 899999999999999999999999 997 4455551 1
Q ss_pred ---ccC-------CCCC-----CCChh--------------H---H-HHHHHHHhcCc----ceeeeccCCCCchhHHHH
Q 026051 118 ---SQV-------KPSC-----SLTPT--------------E---I-DYLTDRIQNGG----TEVVEAKTGAGSATLSMA 160 (244)
Q Consensus 118 ---s~~-------~~~~-----~~~~~--------------~---~-~~l~~~v~~~~----~~ii~~k~~~g~~~~s~a 160 (244)
+.. .+.. .+.++ . | .++.+..+... .+-++ .++.+.|+.
T Consensus 228 ~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~---~r~g~~y~e- 303 (419)
T cd05296 228 LLFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELE---KRGGAGYSE- 303 (419)
T ss_pred cchHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhH---hhcCcchHH-
Confidence 100 0110 01111 0 1 12222222210 11111 123344655
Q ss_pred HHHHHHHHHHHhccCCCCCeeeeeEecCC----CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHH
Q 026051 161 YAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQ 236 (244)
Q Consensus 161 ~a~~~~i~ai~~~~~~~~~~~~~~~~~~~----~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~ 236 (244)
.+++++++|.++ ++..+.+.+.+.+ .|++.++.+||.++++|+.++-- .+|++....+++.-...=+-.++
T Consensus 304 -~a~~ii~ai~~~---~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~ve 378 (419)
T cd05296 304 -AALALISAIYND---KGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIE 378 (419)
T ss_pred -HHHHHHHHHhcC---CCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999999985 6677777766554 36789999999999999999744 48999888776655443333444
Q ss_pred Hh
Q 026051 237 KG 238 (244)
Q Consensus 237 ~~ 238 (244)
.+
T Consensus 379 Aa 380 (419)
T cd05296 379 AA 380 (419)
T ss_pred HH
Confidence 43
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.89 E-value=2.3e-22 Score=185.10 Aligned_cols=223 Identities=17% Similarity=0.191 Sum_probs=156.6
Q ss_pred CcEEEEcCCCC-CCCC--------------CCHHHH--------HHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHH
Q 026051 1 MDIVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 57 (244)
Q Consensus 1 aDiviitag~~-~~~g--------------~~r~~l--------~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ 57 (244)
||+||+|++.+ ++++ ++|.|. +.+|+++++++++.|+++||+||+|++|||+|
T Consensus 76 ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d---- 151 (431)
T PRK15076 76 ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA---- 151 (431)
T ss_pred CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----
Confidence 79999999987 5667 778888 89999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEec--hhhHHHHHHHHHHHhCCCCCcceeeEec-cCC---------Cceeeecccc------
Q 026051 58 IAAEVFKKVGTYDPKRLLGVT--MLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------GVTILPLLSQ------ 119 (244)
Q Consensus 58 ilt~~~~~~~~~~~~~viG~t--~ld~~R~~~~la~~l~v~~~~v~~~viG-~h~---------g~~~vp~~s~------ 119 (244)
++|++++ ++|+.||||+| .+|+. +.+|+.+++++++|++++.| ||- |+..+|....
T Consensus 152 ivt~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~ 225 (431)
T PRK15076 152 MNTWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQ 225 (431)
T ss_pred HHHHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccC
Confidence 9999887 67889999996 57875 88999999999999999999 987 3344442110
Q ss_pred ---CC-------------CC-------C---CC----ChhHHHHHH----HHHh------cCcceee-eccCCCCc--hh
Q 026051 120 ---VK-------------PS-------C---SL----TPTEIDYLT----DRIQ------NGGTEVV-EAKTGAGS--AT 156 (244)
Q Consensus 120 ---~~-------------~~-------~---~~----~~~~~~~l~----~~v~------~~~~~ii-~~k~~~g~--~~ 156 (244)
.. +. . .+ .++..++.. +..+ ....+.. +..+++.. ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (431)
T PRK15076 226 TRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKR 305 (431)
T ss_pred chhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCcccccc
Confidence 00 00 0 01 111111111 1000 0000011 11111000 22
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCeeeeeEecCC----CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHH
Q 026051 157 LSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELA 232 (244)
Q Consensus 157 ~s~a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~----~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~ 232 (244)
|+. .+++++++|.++ ++.++.+.+.|.+ .|+|.++.+||.++++|++++--. +|++..+.+++.-...-+
T Consensus 306 ~~e--~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g-~lP~~~~~l~~~~~~~e~ 379 (431)
T PRK15076 306 SRE--YASTIIEAIETG---EPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVG-DLPPQLAALNRTNINVQE 379 (431)
T ss_pred chH--HHHHHHHHHhcC---CceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecC-CCCHHHHHHHHHHHHHHH
Confidence 444 789999999985 6677777776665 368899999999999999997655 899998888776655444
Q ss_pred HHHHHhh
Q 026051 233 GSIQKGV 239 (244)
Q Consensus 233 ~~~~~~~ 239 (244)
-.++.++
T Consensus 380 l~veAa~ 386 (431)
T PRK15076 380 LTVEAAL 386 (431)
T ss_pred HHHHHHH
Confidence 4444443
No 39
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.89 E-value=9.1e-22 Score=180.72 Aligned_cols=197 Identities=17% Similarity=0.140 Sum_probs=140.5
Q ss_pred HHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCCCcc
Q 026051 21 LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 100 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~~~v 100 (244)
..-+|+++++++++.|+++||+||+|++|||+| ++|+++++.+ |+.||||+|.. +.|+++.+|+.+++++++|
T Consensus 115 ~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a~~~~~--p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v 187 (425)
T cd05197 115 SGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEAVRRYV--PPEKAVGLCNV-PIGVMEIVAKLLGESEEKV 187 (425)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHHHHHhC--CCCcEEEECCC-HHHHHHHHHHHhCCCHHHe
Confidence 344899999999999999999999999999999 9999999985 78899999765 8999999999999999999
Q ss_pred eeeEec-cCCCceeeeccccCCCCC----------------------------------------C----------CC--
Q 026051 101 DVPVVG-GHAGVTILPLLSQVKPSC----------------------------------------S----------LT-- 127 (244)
Q Consensus 101 ~~~viG-~h~g~~~vp~~s~~~~~~----------------------------------------~----------~~-- 127 (244)
+++++| ||+ ++||+..+++ . ..
T Consensus 188 ~~~v~GlnHg-----~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~ 262 (425)
T cd05197 188 DWQYAGLNHG-----IWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDK 262 (425)
T ss_pred EEEEEeccCe-----EeeEeEEECCeecHHHHHHHHhccCccccccccccccccchHHHHHHhCCCcccCCccccCccch
Confidence 999999 996 3343332110 0 00
Q ss_pred --hh-------------H---H-HHHHHHHhcC---cce-eeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeee
Q 026051 128 --PT-------------E---I-DYLTDRIQNG---GTE-VVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECA 184 (244)
Q Consensus 128 --~~-------------~---~-~~l~~~v~~~---~~~-ii~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~ 184 (244)
++ + + +++.+..+.. ... -+. .++...|+. .++.++++|.++ ++.++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~---~r~~~~~~e--~a~~ii~ai~~~---~~~~~~vN 334 (425)
T cd05197 263 XRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELI---KRGGRKYSE--AAIPLIRALLND---NGARFVVN 334 (425)
T ss_pred hhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhh---hcCCcccHH--HHHHHHHHHHcC---CCeEEEEE
Confidence 00 0 0 0122222110 000 011 013344555 888999999986 66777776
Q ss_pred EecCC----CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 026051 185 YVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKG 238 (244)
Q Consensus 185 ~~~~~----~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~ 238 (244)
+.|.+ .|++.++.+||.++++|++++--. +|++....+++.-...-+-.++.+
T Consensus 335 v~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~vg-~lp~~~~~Li~~~~~~e~l~veAa 391 (425)
T cd05197 335 TRNNGAIANIDDDVVVEVPCLVDKNGPHPIKVG-PLDRFVKGLLRQRKMRERLALEAF 391 (425)
T ss_pred CCCCCCCCCCCCCCEEEEeEEEcCCCceecccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66555 367899999999999999997544 898887777666544444344443
No 40
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.86 E-value=3.9e-22 Score=157.47 Aligned_cols=72 Identities=49% Similarity=0.815 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEE
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLG 76 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG 76 (244)
|||||+|||.|++||++|.++++.|+++++++++++++++|+++++++|||+| ++|+++++.+++||+||||
T Consensus 70 aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 70 ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence 69999999999999999999999999999999999999999999999999999 9999999999999999998
No 41
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.83 E-value=4.6e-19 Score=163.30 Aligned_cols=224 Identities=18% Similarity=0.153 Sum_probs=157.9
Q ss_pred CcEEEEcCCCCCCCCCCH----------------------HHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHH
Q 026051 1 MDIVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPI 58 (244)
Q Consensus 1 aDiviitag~~~~~g~~r----------------------~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~i 58 (244)
||+||++++.+..++.+| .....+|+++++++++.++++||+++++++|||+| +
T Consensus 75 AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i 150 (423)
T cd05297 75 ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----E 150 (423)
T ss_pred CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----H
Confidence 799999999888888777 45667999999999999999999999999999999 9
Q ss_pred HHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCCCcceeeEec-cCC---------Cceeeeccc----------
Q 026051 59 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVG-GHA---------GVTILPLLS---------- 118 (244)
Q Consensus 59 lt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~~~v~~~viG-~h~---------g~~~vp~~s---------- 118 (244)
+|+++++.++ .|++|+|.. +.|+++.+|+.+++++++|+++++| ||. |+..+|...
T Consensus 151 ~t~~~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~ 226 (423)
T cd05297 151 LTWALNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEW 226 (423)
T ss_pred HHHHHHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccc
Confidence 9999999987 599999754 7899999999999999999999999 987 444444211
Q ss_pred -cCCC--------CCCCC----------------h-hHHHH------------------HHHHHhcCcceeeeccCCCCc
Q 026051 119 -QVKP--------SCSLT----------------P-TEIDY------------------LTDRIQNGGTEVVEAKTGAGS 154 (244)
Q Consensus 119 -~~~~--------~~~~~----------------~-~~~~~------------------l~~~v~~~~~~ii~~k~~~g~ 154 (244)
.... .+.++ . +.... +..+.......-.......+.
T Consensus 227 ~~~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (423)
T cd05297 227 DQLSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPV 306 (423)
T ss_pred hhcccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhcccc
Confidence 1110 00000 0 11000 111111101000000000112
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCeeeeeEecCC----CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 026051 155 ATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230 (244)
Q Consensus 155 ~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~----~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~ 230 (244)
..++. .+++++++|.++ ++.++.+.+.|.+ .|++.++.+||.++++|++++--. +|++....+++.-...
T Consensus 307 ~~~~e--~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~g-~lp~~~~~l~~~~~~~ 380 (423)
T cd05297 307 KRSGE--YASPIIEALVTG---KPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKIG-PLPPQLAALIRPRINV 380 (423)
T ss_pred ccchH--HHHHHHHHHhcC---CceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceecccC-CCCHHHHHHHHHHHHH
Confidence 23444 688999999985 6777777776665 367899999999999999997554 8999888887766554
Q ss_pred HHHHHHHh
Q 026051 231 LAGSIQKG 238 (244)
Q Consensus 231 l~~~~~~~ 238 (244)
-+-.++.+
T Consensus 381 e~l~veA~ 388 (423)
T cd05297 381 QELAVEAA 388 (423)
T ss_pred HHHHHHHH
Confidence 44444444
No 42
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.81 E-value=1.8e-18 Score=159.27 Aligned_cols=202 Identities=16% Similarity=0.184 Sum_probs=140.5
Q ss_pred HHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCCCcc
Q 026051 21 LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 100 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~~~v 100 (244)
..-+|+++++++++.|+++||+|++|++|||+| ++|+++++. +|+.||||+|.... -++..+|+.||++++++
T Consensus 115 ~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v 187 (437)
T cd05298 115 YGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEALRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDL 187 (437)
T ss_pred HHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHc
Confidence 455999999999999999999999999999999 999999887 78889999998764 67888999999999999
Q ss_pred eeeEec-cCC----------Cceeeeccc----c----------C-----------------------CCCC----CC-C
Q 026051 101 DVPVVG-GHA----------GVTILPLLS----Q----------V-----------------------KPSC----SL-T 127 (244)
Q Consensus 101 ~~~viG-~h~----------g~~~vp~~s----~----------~-----------------------~~~~----~~-~ 127 (244)
+.-+.| ||. |...+|... . . .++. .+ .
T Consensus 188 ~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~ 267 (437)
T cd05298 188 EPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYP 267 (437)
T ss_pred eEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccccccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCCh
Confidence 999999 886 223333211 0 0 0000 00 0
Q ss_pred hh--------------H---H-HHHHHHHhcC----cceeeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeeeeE
Q 026051 128 PT--------------E---I-DYLTDRIQNG----GTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAY 185 (244)
Q Consensus 128 ~~--------------~---~-~~l~~~v~~~----~~~ii~~k~~~g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~~ 185 (244)
++ . + +++.+..++. ..+..+.+ + ..| |.++++++++|+++ ++.++++++
T Consensus 268 ~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~-~~y--a~~a~~ii~aI~~d---~~~~~~vnv 338 (437)
T cd05298 268 DYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFH---V-DVH--GEYIVDLAASIAYN---TKERFLVIV 338 (437)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhh---c-cch--HHHHHHHHHHHHcC---CCeEEEEEe
Confidence 00 0 1 0111111110 00000111 1 124 55899999999985 788999986
Q ss_pred e-cCCC---CCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 026051 186 V-ASTV---TELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 186 ~-~~~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 239 (244)
. +|.| ++|+++++||+||++|++++--. +|++....+++.-...-+-.++.++
T Consensus 339 ~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~vg-~lP~~~~~l~~~~~~~e~l~veAa~ 395 (437)
T cd05298 339 ENNGAIPNLPDDAMVEVPAYIGSNGPEPLVVG-KIPTFYKGLMEQQVAYEKLLVEAYL 395 (437)
T ss_pred ecCCccCCCCCCcEEEEEEEEeCCCceecccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4455 47899999999999999997544 8999988887766554444444443
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.67 E-value=3.1e-15 Score=135.96 Aligned_cols=204 Identities=18% Similarity=0.220 Sum_probs=140.0
Q ss_pred HHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCC-Ccce
Q 026051 23 NINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDP-REVD 101 (244)
Q Consensus 23 ~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~-~~v~ 101 (244)
-+++|++-+|++.|+++||+||++++|||+. ++|+++++.++ .-|++|+|... .-....+|+.|++++ ++++
T Consensus 120 lRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTeAv~r~~~--~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~ 192 (442)
T COG1486 120 LRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTEAVRRLYP--KIKIVGLCHGP-IGIAMELAEVLGLEPREDLR 192 (442)
T ss_pred cccchHHHHHHHHHHHhCCCceEEeccChHH----HHHHHHHHhCC--CCcEEeeCCch-HHHHHHHHHHhCCCchhcee
Confidence 3899999999999999999999999999999 99999998754 33999999875 478899999999986 9999
Q ss_pred eeEec-cCC---------Cceeeec-----------------------cccCC--------CCC-----C----------
Q 026051 102 VPVVG-GHA---------GVTILPL-----------------------LSQVK--------PSC-----S---------- 125 (244)
Q Consensus 102 ~~viG-~h~---------g~~~vp~-----------------------~s~~~--------~~~-----~---------- 125 (244)
.-+.| ||. |....|. |.... ++. .
T Consensus 193 ~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 272 (442)
T COG1486 193 YRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEPENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKP 272 (442)
T ss_pred EEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCccccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccc
Confidence 99999 887 2222221 11000 000 0
Q ss_pred -------CChhHHHH----HHHHHhc-CcceeeeccCCCCch--hHHHHHHHHHHHHHHHhccCCCCCeeeeeEecCC--
Q 026051 126 -------LTPTEIDY----LTDRIQN-GGTEVVEAKTGAGSA--TLSMAYAAAKFADACLRGLRGDAGVIECAYVAST-- 189 (244)
Q Consensus 126 -------~~~~~~~~----l~~~v~~-~~~~ii~~k~~~g~~--~~s~a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~-- 189 (244)
...+++.+ ..+.-++ .-.+-.+-...++.+ .++. +++++++||+++ ++.++.+.+.+.+
T Consensus 273 ~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~e--~a~~ii~Ai~~~---~~~~~~vNv~N~G~I 347 (442)
T COG1486 273 DEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRIGAGKYSSE--YASNIINAIENN---KPSRIYVNVRNNGAI 347 (442)
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcCCcccccHH--HHHHHHHHHhcC---CceEEEEEcCCCccc
Confidence 11111111 1111110 000000000011222 4555 889999999996 7778777776554
Q ss_pred --CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 026051 190 --VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGV 239 (244)
Q Consensus 190 --~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~l~~~~~~~~ 239 (244)
+|+|.++.+||+++++|++++... +|++.-..+++.....-+-.+++++
T Consensus 348 ~nlp~D~vVEvpc~Vd~~Gi~P~~~g-~lP~~~~~l~~~~i~~e~l~veA~~ 398 (442)
T COG1486 348 TNLPDDAVVEVPCLVDRNGIHPLAVG-DLPEFVKGLMHTNINVEELTVEAAL 398 (442)
T ss_pred cCCCCCeEEEeeEEecCCCCcccccC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999997776 9999999988887766555555443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=98.79 E-value=1.8e-08 Score=82.55 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=56.6
Q ss_pred HHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCC
Q 026051 21 LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL 95 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v 95 (244)
..-+++|.+.++++.|+++||+||++++|||+. ++|+++.+.++ .-|++|+|... .-+...+|+.||+
T Consensus 116 ~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a~~r~~~--~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 116 RALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEALSRYTP--KIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHHHHHHST--TSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHHHHHhCC--CCCEEEECCCH-HHHHHHHHHHhCc
Confidence 455999999999999999999999999999999 99999998764 35899999776 4678888888874
No 45
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases. It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.
Probab=97.03 E-value=0.0069 Score=51.54 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=51.3
Q ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCeeeeeEecCC----CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 026051 153 GSATLSMAYAAAKFADACLRGLRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228 (244)
Q Consensus 153 g~~~~s~a~a~~~~i~ai~~~~~~~~~~~~~~~~~~~----~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~ 228 (244)
|+..|+. .++ .+|.++ ++.++.+++.|.+ +|.|.++.+||+|+++|+.++.-. +|++....+++...
T Consensus 134 ~~~~~a~--~~i---~~i~~~---~~~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~g-~lP~~~~~li~~~~ 204 (232)
T PF11975_consen 134 GSGEYAE--AAI---EAIYND---KPKRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAVG-PLPPAIAGLIQQVK 204 (232)
T ss_dssp TTSCHHH--HHH---HHHHHS---SEEEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-SB----HHHHHHHHHHH
T ss_pred cccchHH--HHH---HHHhcC---CCeEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccCC-CCCHHHHHHHHHHH
Confidence 4555555 444 444564 6667777777665 367899999999999999996555 99999999888776
Q ss_pred HHHHHHHHHhh
Q 026051 229 KELAGSIQKGV 239 (244)
Q Consensus 229 ~~l~~~~~~~~ 239 (244)
..-+-.++.++
T Consensus 205 ~~e~L~veAa~ 215 (232)
T PF11975_consen 205 AYERLTVEAAL 215 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 46
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.80 E-value=10 Score=30.40 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+|+|..|...--.....+.+..| ++++.+.+++..|++.|++++.|
T Consensus 68 pd~Vii~~G~ND~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 68 FDVAVISIGVNDVTHLTSIARWRKQ---LAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred CCEEEEEecccCcCCCCCHHHHHHH---HHHHHHHHHhhCCCCEEEEECCC
Confidence 4899999887653322233444444 56677777777899988888855
No 47
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=75.15 E-value=9.7 Score=30.33 Aligned_cols=48 Identities=27% Similarity=0.378 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCCCC--CC---CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKP--GM---TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~--g~---~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+|||..|....- +. ...+.+..| ++.+.+.+++..|++.++++|.|
T Consensus 64 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ii~~t~~ 116 (199)
T cd01838 64 PDLVTIFFGANDAALPGQPQHVPLDEYKEN---LRKIVSHLKSLSPKTKVILITPP 116 (199)
T ss_pred ceEEEEEecCccccCCCCCCcccHHHHHHH---HHHHHHHHHhhCCCCeEEEeCCC
Confidence 48999998865421 11 234555555 56777777777899988888855
No 48
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=68.27 E-value=18 Score=31.29 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 22 FNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 22 ~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
.+.+...+..+...|++.+|+..||+---||-
T Consensus 147 ~~ei~~~l~~~~~~l~~~nP~~kiilTVSPVr 178 (251)
T PF08885_consen 147 VEEILEDLEAIIDLLRSINPDIKIILTVSPVR 178 (251)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEEeccch
Confidence 56888999999999999999998888777997
No 49
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=67.41 E-value=21 Score=27.46 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 1 MDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 1 aDiviitag~~~~-~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
.|+|||..|...- .+. . .+.-.+-++.+.+.+++.+|++.+++.+-
T Consensus 41 pd~vvi~~G~ND~~~~~-~---~~~~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 41 PDVVLLHLGTNDLVLNR-D---PDTAPDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCEEEEeccCcccccCC-C---HHHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 4889999887642 222 2 23445566778888888899998887764
No 50
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.02 E-value=23 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=31.0
Q ss_pred CcEEEEcCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 1 MDIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 1 aDiviitag~~~~~--g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
.|+|+|..|...-- .....+.+..| ++.+.+.+++.+|++.|++++-
T Consensus 68 pd~Vii~~G~ND~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iil~t~ 116 (188)
T cd01827 68 PNIVIIKLGTNDAKPQNWKYKDDFKKD---YETMIDSFQALPSKPKIYICYP 116 (188)
T ss_pred CCEEEEEcccCCCCCCCCccHHHHHHH---HHHHHHHHHHHCCCCeEEEEeC
Confidence 38899998876421 12223445554 5567777888889988877774
No 51
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.68 E-value=14 Score=29.33 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=32.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.|+|||..|...-... . .-.+-++++.+.+++.+|++.|++++.|-
T Consensus 58 pd~vii~~G~ND~~~~---~---~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 58 ADLYIIDCGPNIVGAE---A---MVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred CCEEEEEeccCCCccH---H---HHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 4788998887642111 1 33556778888888999999888888554
No 52
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.66 E-value=23 Score=27.69 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=30.6
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+||+..|....-.....+.+.+| +.++...+++..|++.|++++-|
T Consensus 49 pd~vvl~~G~ND~~~~~~~~~~~~~---l~~li~~~~~~~~~~~vi~~~~~ 96 (169)
T cd01828 49 PKAIFIMIGINDLAQGTSDEDIVAN---YRTILEKLRKHFPNIKIVVQSIL 96 (169)
T ss_pred CCEEEEEeeccCCCCCCCHHHHHHH---HHHHHHHHHHHCCCCeEEEEecC
Confidence 4889999886543222223444444 55666677777888888888744
No 53
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=65.62 E-value=46 Score=28.44 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCC
Q 026051 1 MDIVIIPAGVPR--KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP------VNSTVPIAAEVFKKVGTYDPK 72 (244)
Q Consensus 1 aDiviitag~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP------vd~~~~ilt~~~~~~~~~~~~ 72 (244)
+|+||-.|+... .......+.+..|..-...+++.+.+...+..++.+|-. .+.. ..+ ......+.
T Consensus 74 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~--~~~----e~~~~~~~ 147 (317)
T TIGR01181 74 PDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGD--AFT----ETTPLAPS 147 (317)
T ss_pred CCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCC--CcC----CCCCCCCC
Confidence 489999888543 122344567888999999999998887666566655431 1100 001 11122233
Q ss_pred CeEEechhhHHHHHHHHHHHhCCCCCcce-eeEeccC
Q 026051 73 RLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 108 (244)
Q Consensus 73 ~viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 108 (244)
...|.+-....++-..+++..+++..-++ ..++|..
T Consensus 148 ~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 148 SPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 33444333334544555667777766666 4566743
No 54
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=65.38 E-value=27 Score=27.39 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred CcEEEEcCCCCCCCC---CCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 1 MDIVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 1 aDiviitag~~~~~g---~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
.|+|||..|....-. .+.. .+ ..-++++.+.+++..|++.|++.+.|..
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~-~~---~~~~~~li~~i~~~~p~~~i~~~~~~~~ 107 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGE-DF---TNAYVEFIEELRKRYPDAPIVLMLGPML 107 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHH-HH---HHHHHHHHHHHHHHCCCCeEEEEecCcc
Confidence 489999999765321 1322 23 3345667777788889998888876654
No 55
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=64.96 E-value=20 Score=29.43 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=30.7
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
.|+|||..|........-.+.+ ..-++.+...+++.+|++.|++++-
T Consensus 90 pd~VvI~~G~ND~~~~~~~~~~---~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 90 PKVVVLLIGTNNIGHTTTAEEI---AEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCEEEEEecccccCCCCCHHHH---HHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3789999997653222122233 3446677778888889998877773
No 56
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=61.14 E-value=26 Score=27.45 Aligned_cols=46 Identities=22% Similarity=0.135 Sum_probs=32.3
Q ss_pred CcEEEEcCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 1 MDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 1 aDiviitag~~~~-~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
.|+|++..|...- .+.+ .+.-.+-++++.+.+++.+|++.+++++-
T Consensus 51 p~~vvi~~G~ND~~~~~~----~~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 51 PRRVVLYAGDNDLASGRT----PEEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CCEEEEEEecCcccCCCC----HHHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 3788998887652 3333 33345567778888888899998888874
No 57
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=60.32 E-value=30 Score=27.11 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=31.2
Q ss_pred cEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC-CCC
Q 026051 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN-PVN 53 (244)
Q Consensus 2 Diviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN-Pvd 53 (244)
|+|++..|..........+.+.. -++.+...+++..|++.|++++- |..
T Consensus 53 d~v~i~~G~ND~~~~~~~~~~~~---~~~~l~~~~~~~~p~~~vi~~~~~p~~ 102 (174)
T cd01841 53 SKVFLFLGTNDIGKEVSSNQFIK---WYRDIIEQIREEFPNTKIYLLSVLPVL 102 (174)
T ss_pred CEEEEEeccccCCCCCCHHHHHH---HHHHHHHHHHHHCCCCEEEEEeeCCcC
Confidence 78888888765322222333444 45566777777889988888774 454
No 58
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.47 E-value=30 Score=27.31 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=31.7
Q ss_pred CcEEEEcCCCCCCC-CCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKP-GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~-g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+|||..|..... +..-.+.+ .+-++.+...+++.+|++.|++++-|
T Consensus 57 pd~Vii~~G~ND~~~~~~~~~~~---~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 57 PDLVILSYGTNEAFNKQLNASEY---RQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCEEEEECCCcccccCCCCHHHH---HHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 38899999976532 11112233 44566777777888899999988854
No 59
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=58.78 E-value=88 Score=25.92 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=13.4
Q ss_pred HHHHHHHhhCCCcEEEEecCCCC
Q 026051 31 TLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 31 ~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
++.+.+...-.+.++|-++||.+
T Consensus 83 ~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 83 KTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred HHHHHHHHhccCCEEEEeccCce
Confidence 33334433333457888899976
No 60
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=57.90 E-value=11 Score=26.42 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 026051 215 PLNEYERAGLEKAKKELAGS 234 (244)
Q Consensus 215 ~L~~~E~~~l~~s~~~l~~~ 234 (244)
+|||+||+.|++..++|..+
T Consensus 2 ~LSe~E~r~L~eiEr~L~~~ 21 (82)
T PF11239_consen 2 PLSEHEQRRLEEIERQLRAD 21 (82)
T ss_pred CCCHHHHHHHHHHHHHHHhc
Confidence 69999999999988888653
No 61
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=57.40 E-value=45 Score=30.71 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=60.3
Q ss_pred HHHHhHHHHHHHHHHHHhhCCCcEEEEecC--CCCCcHHHHHHHHHHhCCCCCCCeEEe-ch--hhHHHHHHHHHHHhCC
Q 026051 21 LFNINAGIVKTLCEGIAKCCPKAIVNLISN--PVNSTVPIAAEVFKKVGTYDPKRLLGV-TM--LDVVRANTFVAEVLGL 95 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN--Pvd~~~~ilt~~~~~~~~~~~~~viG~-t~--ld~~R~~~~la~~l~v 95 (244)
+...+...++.+++.+++.+.++.++.++- |.+ +++. +.++.++ ++|+ |. --.-..+..|...++.
T Consensus 256 myg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~e----I~~~-i~~a~~~----vvGsPT~~~~~~p~i~~~l~~v~~~ 326 (388)
T COG0426 256 MYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSE----IVEE-ILDAKGL----VVGSPTINGGAHPPIQTALGYVLAL 326 (388)
T ss_pred ccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHH----HHHH-HhhcceE----EEecCcccCCCCchHHHHHHHHHhc
Confidence 344566788899999999999988877763 444 5655 4456665 8999 73 2234678889999999
Q ss_pred CCCcceeeEeccCC
Q 026051 96 DPREVDVPVVGGHA 109 (244)
Q Consensus 96 ~~~~v~~~viG~h~ 109 (244)
.+.+=.+-++|.+|
T Consensus 327 ~~~~k~~~vfgS~G 340 (388)
T COG0426 327 APKNKLAGVFGSYG 340 (388)
T ss_pred cCcCceEEEEeccC
Confidence 88888899999995
No 62
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=53.34 E-value=17 Score=28.90 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=32.9
Q ss_pred cEEEEcCCCCCCCCCCHHHHHH-HhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 2 DIVIIPAGVPRKPGMTRDDLFN-INAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 2 Diviitag~~~~~g~~r~~l~~-~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
|.||+.||..++-|..- .++. .+.+++......+.+..++-++++++++.
T Consensus 1 ~~iIla~G~s~R~g~~K-~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~ 51 (188)
T TIGR03310 1 DAIILAAGLSSRMGQNK-LLLPYKGKTILEHVVDNALRLFFDEVILVLGHEA 51 (188)
T ss_pred CeEEECCCCcccCCCCc-eecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcH
Confidence 67888999877655321 1222 56788888888888777666666555543
No 63
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=51.89 E-value=27 Score=24.89 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=28.4
Q ss_pred EecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 026051 185 YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228 (244)
Q Consensus 185 ~~~~~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~ 228 (244)
+++|+ .+.|+++|-.=.++|..+-+-- |+|.+-++.|++++
T Consensus 36 Vieg~--~GlFVaMPs~k~~~g~y~Di~~-Pitke~Re~i~~aV 76 (84)
T PF04026_consen 36 VIEGE--KGLFVAMPSRKSKDGEYKDICH-PITKEFREQIEEAV 76 (84)
T ss_dssp EEEET--TEEEEE--EEE-TTS-EEESEE-ESSHHHHHHHHHHH
T ss_pred EEECC--CCcEEECCCcCCCCCCEEEEEE-ECCHHHHHHHHHHH
Confidence 34443 4689999999999988776555 79999999998875
No 64
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=51.43 E-value=46 Score=26.21 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~g-~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+|||..|...... ....+.+..+. +.+.+.++ .|++.|++++.|
T Consensus 68 ~d~vii~~G~ND~~~~~~~~~~~~~~~---~~~i~~i~--~~~~~vil~~~~ 114 (185)
T cd01832 68 PDLVTLLAGGNDILRPGTDPDTYRADL---EEAVRRLR--AAGARVVVFTIP 114 (185)
T ss_pred CCEEEEeccccccccCCCCHHHHHHHH---HHHHHHHH--hCCCEEEEecCC
Confidence 489999888764322 33334455444 44555555 467777777754
No 65
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=49.05 E-value=45 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 25 NAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 25 N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
-..-++.+.+.+++.+|++.|++++-|
T Consensus 129 ~~~~l~~~l~~i~~~~p~a~I~~~gyp 155 (259)
T cd01823 129 VGARLKAVLDRIRERAPNARVVVVGYP 155 (259)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeccc
Confidence 345577788888888999998888843
No 66
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=47.50 E-value=76 Score=23.36 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 026051 24 INAGIVKTLCEGIAKCCP-KAIVNLISNPVN 53 (244)
Q Consensus 24 ~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd 53 (244)
.+.+.++++++.+++.+| +..|++.++|..
T Consensus 62 ~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 62 THMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred ccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 345666777777777776 666777777655
No 67
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.46 E-value=48 Score=26.88 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=29.6
Q ss_pred CcEEEEcCCCCCCCC--CCHHHHHHHhHHHHHHHHHHHHhhC-----CCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKPG--MTRDDLFNINAGIVKTLCEGIAKCC-----PKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~g--~~r~~l~~~N~~i~~~i~~~i~~~~-----p~~~iiv~tNP 51 (244)
.|+|||..|...--. ....+.+..|.. ++...+++.+ |+..|++++-|
T Consensus 80 pd~vii~lGtND~~~~~~~~~~~~~~~l~---~lv~~i~~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 80 LDLVIIMLGTNDLKSYFNLSAAEIAQGLG---ALVDIIRTAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCEEEEeccccccccccCCCHHHHHHHHH---HHHHHHHhccccccCCCCCEEEEeCC
Confidence 388999988764221 112345665554 5555666665 78877887754
No 68
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=46.28 E-value=42 Score=27.06 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=30.1
Q ss_pred CcEEEEcCCCCCCC----------CCCH-HHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 1 MDIVIIPAGVPRKP----------GMTR-DDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 1 aDiviitag~~~~~----------g~~r-~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
.|+|+|..|...-. +..+ ..-.+.-.+-++++...+++.+|++.|++++
T Consensus 69 ~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 69 ADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred CCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 47888888864310 0001 1112233445678888888889999888877
No 69
>PRK09458 pspB phage shock protein B; Provisional
Probab=46.03 E-value=44 Score=23.29 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCHHHHHHHH---HHHHHHHHHHHHhhhhhh
Q 026051 215 PLNEYERAGLE---KAKKELAGSIQKGVSFVR 243 (244)
Q Consensus 215 ~L~~~E~~~l~---~s~~~l~~~~~~~~~~~~ 243 (244)
.|+++|+++|+ +.|+.+++.++..+.+++
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQALEAILD 66 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 48888877666 678889998888887765
No 70
>PF04432 FrhB_FdhB_C: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; InterPro: IPR007525 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the C-termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The C terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the N terminus IPR007516 from INTERPRO.
Probab=45.36 E-value=76 Score=25.04 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=39.9
Q ss_pred CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC--CeEEe-c--hhhHHHHHHHHHHHhCCCCCcceeeEecc
Q 026051 42 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPK--RLLGV-T--MLDVVRANTFVAEVLGLDPREVDVPVVGG 107 (244)
Q Consensus 42 ~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~--~viG~-t--~ld~~R~~~~la~~l~v~~~~v~~~viG~ 107 (244)
+-.|++++-|++.. -+..+.++-..+..+ -+||+ | ..+-..++..|.+++++++.+|.-+-+-+
T Consensus 4 ~~kV~~vG~PCqi~--al~~~~~~~~~~~~~~~~~igl~C~g~~s~~~~~~~l~~~~~~~~~~v~~~~~r~ 72 (161)
T PF04432_consen 4 GKKVAFVGTPCQIA--ALRKLLKRNYENRDEIVYTIGLFCHGVPSPKKLRKYLEEQLGIKPDDVKKFDFRD 72 (161)
T ss_pred CCEEEEEeccHHHH--HHHHHHhhCcccCcceEEEEeEECCCCCCHHHHHHHHHHHhCCChhheeEEEEeC
Confidence 34788899999922 222322221111101 45888 6 56777778999999999999876544443
No 71
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=45.01 E-value=42 Score=29.50 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=35.5
Q ss_pred cEEEEcCCCCC-CCCCCHHHH-HHHhHHHHHHHHHHHHhhCC--CcEEEEec
Q 026051 2 DIVIIPAGVPR-KPGMTRDDL-FNINAGIVKTLCEGIAKCCP--KAIVNLIS 49 (244)
Q Consensus 2 Diviitag~~~-~~g~~r~~l-~~~N~~i~~~i~~~i~~~~p--~~~iiv~t 49 (244)
||+|||+.-.- |...+-.|+ --+|++-|-+-++..++|-| +..||+++
T Consensus 156 DIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAG 207 (287)
T PF05582_consen 156 DILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAG 207 (287)
T ss_pred CEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 89999977442 222333342 34899999999999999986 57888877
No 72
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=43.62 E-value=1.1e+02 Score=23.52 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=35.0
Q ss_pred HHHHhHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-chhh
Q 026051 21 LFNINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLD 81 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ld 81 (244)
+.....+.++++++.+++.++ +..+++-+++.+. -... ++..|+ .++|+. |.+.
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~---~~~~--l~~~Gv--d~~~~~gt~~~ 117 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQ---DFDE--LKEMGV--AEIFGPGTPIP 117 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChH---hHHH--HHHCCC--CEEECCCCCHH
Confidence 345667788999999999876 5566666655441 2222 355677 478888 6443
No 73
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=42.92 E-value=68 Score=24.71 Aligned_cols=55 Identities=7% Similarity=-0.005 Sum_probs=27.4
Q ss_pred CCCcEEEEec-CCCC---CcHHHHHHHHHHhCCCCCCCeEEe----chhhHHHHHHHHHHHhCC
Q 026051 40 CPKAIVNLIS-NPVN---STVPIAAEVFKKVGTYDPKRLLGV----TMLDVVRANTFVAEVLGL 95 (244)
Q Consensus 40 ~p~~~iiv~t-NPvd---~~~~ilt~~~~~~~~~~~~~viG~----t~ld~~R~~~~la~~l~v 95 (244)
++...|++.+ .+.+ .-+..|..++.+. |+|.++|+-- ...+++++-..+-+..++
T Consensus 36 g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~-gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 36 GYAPRILFSGGYGHGDGRSEAEAMRDYLIEL-GVPEERIILEPKSTNTYENARFSKRLLKERGW 98 (155)
T ss_dssp HHT--EEEE--SSTTHTS-HHHHHHHHHHHT----GGGEEEE----SHHHHHHHHHHHHHT-SS
T ss_pred CCCCeEEECCCCCCCCCCCHHHHHHHHHHhc-ccchheeEccCCCCCHHHHHHHHHHHHHhhcC
Confidence 3444456665 2221 2233676767666 8999998633 356667776666666555
No 74
>PRK02628 nadE NAD synthetase; Reviewed
Probab=42.43 E-value=81 Score=31.28 Aligned_cols=73 Identities=27% Similarity=0.221 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHh---CCCCCCCeEEechh------hHHHHHHHHHHHhCCCC
Q 026051 27 GIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKV---GTYDPKRLLGVTML------DVVRANTFVAEVLGLDP 97 (244)
Q Consensus 27 ~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~---~~~~~~~viG~t~l------d~~R~~~~la~~l~v~~ 97 (244)
..+..+.+.+++.+.++++|=+|-=.|+.+ +..++.++ -|.++.+|+|+++. .+......+|+.||++.
T Consensus 347 ~~v~~l~~~~~~~~~~~vvvglSGGiDSal--~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~ 424 (679)
T PRK02628 347 IQVSGLAQRLRATGLKKVVIGISGGLDSTH--ALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTA 424 (679)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHH--HHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeE
Confidence 355666777777778899999998899762 22222333 46778899999653 34566788999999987
Q ss_pred Ccce
Q 026051 98 REVD 101 (244)
Q Consensus 98 ~~v~ 101 (244)
..+.
T Consensus 425 ~~i~ 428 (679)
T PRK02628 425 REID 428 (679)
T ss_pred EEEE
Confidence 6555
No 75
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.82 E-value=70 Score=27.57 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHhcCcceeeeccCCCCchhHHHHHHHHHHHHHHHh
Q 026051 126 LTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 172 (244)
Q Consensus 126 ~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a~a~~~~i~ai~~ 172 (244)
-+++..+.+.+-.+.-|..++..+. ++++...+++.++++
T Consensus 159 t~~e~~~~~~~l~~~lGk~pv~~~d-------~~g~i~~Ri~~~~~~ 198 (282)
T PRK05808 159 TSDATHEAVEALAKKIGKTPVEVKN-------APGFVVNRILIPMIN 198 (282)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEecC-------ccChHHHHHHHHHHH
Confidence 3455555555555666666665431 224455555555544
No 76
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=41.68 E-value=1.2e+02 Score=28.34 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=35.8
Q ss_pred cEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechh
Q 026051 2 DIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTML 80 (244)
Q Consensus 2 Divii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~l 80 (244)
|+|+| |+|... ++...+.++...+....|+..++|++--... --+...+..+..++...+|= |-|
T Consensus 322 DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~~idglI~-TKL 387 (436)
T PRK11889 322 DYILIDTAGKNY-----------RASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDIHIDGIVF-TKF 387 (436)
T ss_pred CEEEEeCccccC-----------cCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCCCCCEEEE-Ecc
Confidence 77777 677543 3344556666666666677666665411111 12344555555555555542 555
Q ss_pred hH
Q 026051 81 DV 82 (244)
Q Consensus 81 d~ 82 (244)
|.
T Consensus 388 DE 389 (436)
T PRK11889 388 DE 389 (436)
T ss_pred cC
Confidence 64
No 77
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=41.44 E-value=2.3e+02 Score=24.99 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=33.7
Q ss_pred cEEEEcCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 2 DIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 2 Diviitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
|+||-+||.+.. ...+....++.|......+.+.+.+.+....+|.+|.
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 77 EIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 889999985432 1223456788999999999998877653345666554
No 78
>PTZ00323 NAD+ synthase; Provisional
Probab=40.86 E-value=1.1e+02 Score=27.08 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC---CCCCeEEechh-----hHH
Q 026051 12 RKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY---DPKRLLGVTML-----DVV 83 (244)
Q Consensus 12 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~---~~~~viG~t~l-----d~~ 83 (244)
.++..+-.+.+..-.. .+-+.+++.+.+++++-+|-=+|+. +++.++.++.|. |..+++|+.+- ++.
T Consensus 20 ~~~~~~~~~~i~~~~~---~L~~~l~~~g~~~vVVglSGGVDSa--v~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~ 94 (294)
T PTZ00323 20 RKRAFNPAAWIEKKCA---KLNEYMRRCGLKGCVTSVSGGIDSA--VVLALCARAMRMPNSPIQKNVGLCQPIHSSAWAL 94 (294)
T ss_pred CCCCCCHHHHHHHHHH---HHHHHHHHcCCCcEEEECCCCHHHH--HHHHHHHHHhccccCCceEEEEEECCCCCCHHHH
Confidence 4455555555544333 3334444566788899999899964 333445555543 44678888422 333
Q ss_pred HHHHHHHHHhCCCCCcce
Q 026051 84 RANTFVAEVLGLDPREVD 101 (244)
Q Consensus 84 R~~~~la~~l~v~~~~v~ 101 (244)
.-...+++.+|++...|.
T Consensus 95 ~~A~~la~~lGi~~~~id 112 (294)
T PTZ00323 95 NRGRENIQACGATEVTVD 112 (294)
T ss_pred HHHHHHHHHhCCcEEEEE
Confidence 445667889998755444
No 79
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=40.08 E-value=1.4e+02 Score=26.04 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=39.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHH-HHHh-CCCC--CCCe---EEe-ch--hhHHHHHHHHHHHhCCCCCcceeeEe
Q 026051 41 PKAIVNLISNPVNSTVPIAAEV-FKKV-GTYD--PKRL---LGV-TM--LDVVRANTFVAEVLGLDPREVDVPVV 105 (244)
Q Consensus 41 p~~~iiv~tNPvd~~~~ilt~~-~~~~-~~~~--~~~v---iG~-t~--ld~~R~~~~la~~l~v~~~~v~~~vi 105 (244)
+...|.+++-||+ +.+-. +++. .++. .++| ||+ |. .+...++.+|.+++|++|.+|..+-+
T Consensus 91 ~~~~va~vGtPCq----i~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~ 161 (275)
T TIGR03289 91 GLEKIGTVGTPCQ----VMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDI 161 (275)
T ss_pred CCCEEEEEccchH----HHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEe
Confidence 5678999999999 44422 2211 1111 1343 888 73 45467889999889999888875544
No 80
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=39.27 E-value=89 Score=23.34 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=29.9
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+||+..|...--... ..-...-.+-++++.+.+.+..|++.|++++-|
T Consensus 66 ~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 66 PDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred CCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 37888888865321110 012334455667777777777788877777744
No 81
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.13 E-value=78 Score=27.77 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=36.2
Q ss_pred cEEEEcCCCCC-CCCCCHHHH-HHHhHHHHHHHHHHHHhhCC--CcEEEEec
Q 026051 2 DIVIIPAGVPR-KPGMTRDDL-FNINAGIVKTLCEGIAKCCP--KAIVNLIS 49 (244)
Q Consensus 2 Diviitag~~~-~~g~~r~~l-~~~N~~i~~~i~~~i~~~~p--~~~iiv~t 49 (244)
||+|||+.-.- |...+..|+ --+|++-|-+-.+..++|-| +-.||+++
T Consensus 155 DIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 155 DILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred CEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 89999977433 333444443 44999999999999999976 57888877
No 82
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=38.21 E-value=92 Score=22.61 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.4
Q ss_pred EEcCCC
Q 026051 5 IIPAGV 10 (244)
Q Consensus 5 iitag~ 10 (244)
|.|-|.
T Consensus 4 i~T~GC 9 (98)
T PF00919_consen 4 IETLGC 9 (98)
T ss_pred EEECCC
Confidence 334443
No 83
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=37.90 E-value=86 Score=29.68 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEE--ecCCCCCcH
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL--ISNPVNSTV 56 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv--~tNPvd~~~ 56 (244)
||++||+-+.|..++-+..+ -.-+...+.+.++.|.++-+++.+|| -|-|..++-
T Consensus 79 advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~ 135 (473)
T PLN02353 79 ADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE 135 (473)
T ss_pred CCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH
Confidence 79999999988753210000 01234456677777777766554433 256777543
No 84
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=37.25 E-value=1.5e+02 Score=22.04 Aligned_cols=48 Identities=8% Similarity=-0.141 Sum_probs=26.9
Q ss_pred HHhHHHHHHHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe
Q 026051 23 NINAGIVKTLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV 77 (244)
Q Consensus 23 ~~N~~i~~~i~~~i~~~~p-~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~ 77 (244)
....+.++++++.+++.+| +..+++.+++... .... ++..|++ .+|+.
T Consensus 61 ~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~---~~~~--~~~~G~d--~~~~~ 109 (122)
T cd02071 61 GGHMTLFPEVIELLRELGAGDILVVGGGIIPPE---DYEL--LKEMGVA--EIFGP 109 (122)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHH---HHHH--HHHCCCC--EEECC
Confidence 3455667788888888766 4455555544331 2222 2345653 57776
No 85
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=37.07 E-value=1.2e+02 Score=26.49 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=28.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 18 RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 18 r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
+.+..+...+-++++++.+++..|+.+ |++|||.
T Consensus 24 ~~~~~~~~~~a~~~~~~~v~~~~pD~i-vvi~~dH 57 (277)
T cd07368 24 PAAQREICWHAYAICAERLAALQVTSV-VVIGDDH 57 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCEE-EEEcCch
Confidence 457788889999999999999999985 6667664
No 86
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.40 E-value=2e+02 Score=23.11 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=46.2
Q ss_pred eEEe-chhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCC
Q 026051 74 LLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGA 152 (244)
Q Consensus 74 viG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~ 152 (244)
|+|+ ..+|+++-...+=+.||++ -...|+--|- +++.+.++.++-+++|.++|-. |-
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi~---ye~~VvSAHR-----------------TPe~m~~ya~~a~~~g~~viIA--gA 65 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGVP---YEVRVVSAHR-----------------TPEKMFEYAEEAEERGVKVIIA--GA 65 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCCC---eEEEEEeccC-----------------CHHHHHHHHHHHHHCCCeEEEe--cC
Confidence 5677 6788888887788888887 3455666661 3566778888889999987764 44
Q ss_pred CchhHHHHHH
Q 026051 153 GSATLSMAYA 162 (244)
Q Consensus 153 g~~~~s~a~a 162 (244)
|.+..-+++.
T Consensus 66 GgAAHLPGmv 75 (162)
T COG0041 66 GGAAHLPGMV 75 (162)
T ss_pred cchhhcchhh
Confidence 4444445443
No 87
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.07 E-value=71 Score=24.98 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=28.0
Q ss_pred CcEEEEcCCCCCCC-C---CCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 1 MDIVIIPAGVPRKP-G---MTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 1 aDiviitag~~~~~-g---~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.|+|++..|....- + ..-.+.+..| ++++...+++..|++.|++++.|
T Consensus 62 ~d~v~l~~G~ND~~~~~~~~~~~~~~~~~---l~~~v~~~~~~~~~~~ii~~~p~ 113 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDDPVGLEKFKTN---LRRLIDRLKNKESAPRIVLVSPI 113 (191)
T ss_pred CCEEEEEeecchHhhcccccccHHHHHHH---HHHHHHHHHcccCCCcEEEECCc
Confidence 37888988864321 1 1223334444 55566666666688777777643
No 88
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=35.34 E-value=1e+02 Score=23.82 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHhHHHHHHHHHHHHhh-CCC-cEEEEec--CCCCCcHHHHHHHHHHhCCC
Q 026051 23 NINAGIVKTLCEGIAKC-CPK-AIVNLIS--NPVNSTVPIAAEVFKKVGTY 69 (244)
Q Consensus 23 ~~N~~i~~~i~~~i~~~-~p~-~~iiv~t--NPvd~~~~ilt~~~~~~~~~ 69 (244)
..=.+|+.+++.++... .++ |.|-++| -||+++..++-++..+++++
T Consensus 75 DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~SC~~vi~qF~~~~pni 125 (133)
T PF14424_consen 75 DSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCESCSNVIEQFKKDFPNI 125 (133)
T ss_pred cHHHHHHHHHHHHhccccccCCceEEEEecCCcChhHHHHHHHHHHHCCCc
Confidence 44579999999999655 466 8888888 47988888888877766554
No 89
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.15 E-value=85 Score=22.87 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHHHhhCCCcEEEEe-cCCCCCcHHHHHHHHHHhCCCCCCCeEEe-chhhHHHHHHHHHHHhCCCCCcceeeEecc
Q 026051 30 KTLCEGIAKCCPKAIVNLI-SNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGG 107 (244)
Q Consensus 30 ~~i~~~i~~~~p~~~iiv~-tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ld~~R~~~~la~~l~v~~~~v~~~viG~ 107 (244)
.++.+.+.+..|+.+.+-+ ..|.- ..+.++++..-...++=.+-+ +..-+..-...+.+.. .++..|.||
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~---~~~~~l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~-----~~D~vv~Ge 112 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNL---PEAKRLARAIKERNPNIPIVVGGPHATADPEEILREYP-----GIDYVVRGE 112 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHH---HHHHHHHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHH-----TSEEEEEET
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcH---HHHHHHHHHHHhcCCCCEEEEECCchhcChHHHhccCc-----CcceecCCC
Confidence 7788888888999877766 33322 234444444434444434444 4544555555555442 356778887
Q ss_pred C
Q 026051 108 H 108 (244)
Q Consensus 108 h 108 (244)
-
T Consensus 113 g 113 (121)
T PF02310_consen 113 G 113 (121)
T ss_dssp T
T ss_pred h
Confidence 4
No 90
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.98 E-value=3.1e+02 Score=23.98 Aligned_cols=124 Identities=11% Similarity=0.192 Sum_probs=62.3
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC---------------CCCCeEEe----
Q 026051 17 TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTY---------------DPKRLLGV---- 77 (244)
Q Consensus 17 ~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~---------------~~~~viG~---- 77 (244)
+..+..+... +++..+.+..++. ++++.|-+.+ +.-+.+++...+ .+++.||+
T Consensus 48 s~e~I~~~~~----~i~~~l~~~~ik~-lVIACNTASa---~al~~LR~~~~iPVvGviPaik~A~~~t~~~~IgViaT~ 119 (269)
T COG0796 48 SEEEIRERTL----EIVDFLLERGIKA-LVIACNTASA---VALEDLREKFDIPVVGVIPAIKPAVALTRNGRIGVIATP 119 (269)
T ss_pred CHHHHHHHHH----HHHHHHHHcCCCE-EEEecchHHH---HHHHHHHHhCCCCEEEeccchHHHHHhccCCeEEEEecc
Confidence 4455555544 4455555666554 5667775542 333445554444 34555554
Q ss_pred chhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhH
Q 026051 78 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL 157 (244)
Q Consensus 78 t~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~ 157 (244)
+.+-+...+..+++. ..++++..+|-. -.||+-..--..+.+..+-.+++...++..+.+++-+ |+|+|
T Consensus 120 ~Tvks~~y~~~i~~~----~~~~~V~~la~p---~lV~lvE~g~~~~~~~~~~l~~~l~~~~~~~~DtlVL----GCTHy 188 (269)
T COG0796 120 ATVKSNAYRDLIARF----APDCEVESLACP---ELVPLVEEGIRGGPVALEVLKEYLPPLQEAGPDTLVL----GCTHY 188 (269)
T ss_pred chhccHHHHHHHHHh----CCCCEEEEecCc---chHHHHhcccccCHHHHHHHHHHhcchhccCCCEEEE----eCcCc
Confidence 356666666666654 356777777732 3555433321111111222334444555555555443 56666
Q ss_pred HH
Q 026051 158 SM 159 (244)
Q Consensus 158 s~ 159 (244)
-.
T Consensus 189 Pl 190 (269)
T COG0796 189 PL 190 (269)
T ss_pred HH
Confidence 43
No 91
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=34.44 E-value=52 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=32.2
Q ss_pred CcEEEEcCCCCC---CCCCCHHH--HHHHhHHHHHHHHHHHHhhCCCcEEEEe-cCCCC
Q 026051 1 MDIVIIPAGVPR---KPGMTRDD--LFNINAGIVKTLCEGIAKCCPKAIVNLI-SNPVN 53 (244)
Q Consensus 1 aDiviitag~~~---~~g~~r~~--l~~~N~~i~~~i~~~i~~~~p~~~iiv~-tNPvd 53 (244)
||+||++.|... .+|.+|.+ |-....+.+ +.+.+.+++.++++. ++|.+
T Consensus 502 aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li----~~v~~~~~~vVvVl~~g~P~~ 556 (765)
T PRK15098 502 ADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLI----AALKATGKPLVLVLMNGRPLA 556 (765)
T ss_pred CCEEEEEEcCCCCccccCCCcccccCCHHHHHHH----HHHHHhCcCEEEEEeCCceee
Confidence 799999998653 45556653 333444444 444556777777766 89998
No 92
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.36 E-value=2e+02 Score=26.74 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=34.1
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEech
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 79 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ 79 (244)
+|+|+| |||..... .+.+.++........|+-.++|++ |.. ...-+..+++++..++...+| +|-
T Consensus 286 ~D~VLIDTAGr~~~d-----------~~~l~EL~~l~~~~~p~~~~LVLs-ag~-~~~d~~~i~~~f~~l~i~glI-~TK 351 (407)
T PRK12726 286 VDHILIDTVGRNYLA-----------EESVSEISAYTDVVHPDLTCFTFS-SGM-KSADVMTILPKLAEIPIDGFI-ITK 351 (407)
T ss_pred CCEEEEECCCCCccC-----------HHHHHHHHHHhhccCCceEEEECC-Ccc-cHHHHHHHHHhcCcCCCCEEE-EEc
Confidence 477777 78865321 222333333333335665455543 311 111234555666667666665 466
Q ss_pred hhH
Q 026051 80 LDV 82 (244)
Q Consensus 80 ld~ 82 (244)
||.
T Consensus 352 LDE 354 (407)
T PRK12726 352 MDE 354 (407)
T ss_pred ccC
Confidence 675
No 93
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=34.34 E-value=2.4e+02 Score=24.61 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=48.5
Q ss_pred CcEEEEcCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-
Q 026051 1 MDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV- 77 (244)
Q Consensus 1 aDiviitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~- 77 (244)
|||+++=.|.-.. -|.....-++.-++.+.++.+...+.+|+.+++..+=|...-- =+.|++++..+. .=++|-
T Consensus 171 aDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~-D~~~~l~~t~~~--~Gf~G~S 247 (268)
T PF09370_consen 171 ADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPE-DAQYVLRNTKGI--HGFIGAS 247 (268)
T ss_dssp -SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHH-HHHHHHHH-TTE--EEEEEST
T ss_pred CCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHH-HHHHHHhcCCCC--CEEeccc
Confidence 6888886664332 2333334577889999999999999999999999987765311 133444444332 234444
Q ss_pred c--hhhHHHHHHHHHHHh
Q 026051 78 T--MLDVVRANTFVAEVL 93 (244)
Q Consensus 78 t--~ld~~R~~~~la~~l 93 (244)
+ .|++.|.-+...+.+
T Consensus 248 s~ERlP~E~ai~~~~~~F 265 (268)
T PF09370_consen 248 SMERLPVERAITETVRAF 265 (268)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHHHHh
Confidence 3 366666555555444
No 94
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=65 Score=25.84 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCC
Q 026051 25 NAGIVKTLCEGIAKCC-PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLD 96 (244)
Q Consensus 25 N~~i~~~i~~~i~~~~-p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~ 96 (244)
...-+.+++.+|+.|+ -++-||+++|-+| ++.+|+|.. .|- ..++++||.+
T Consensus 108 Sf~svqdw~tqIktysw~naqvilvgnKCD---------------md~eRvis~-----e~g-~~l~~~LGfe 159 (193)
T KOG0093|consen 108 SFNSVQDWITQIKTYSWDNAQVILVGNKCD---------------MDSERVISH-----ERG-RQLADQLGFE 159 (193)
T ss_pred HHHHHHHHHHHheeeeccCceEEEEecccC---------------CccceeeeH-----HHH-HHHHHHhChH
Confidence 4456889999999999 4799999999999 345677654 222 2457777763
No 95
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=33.84 E-value=57 Score=23.80 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=29.5
Q ss_pred CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 026051 192 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228 (244)
Q Consensus 192 ~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~ 228 (244)
.+.|+++|-.=..+|..+-+.- |++.+-++.|+.+.
T Consensus 41 ~GlFVaMPs~k~~~g~y~DI~~-Pit~e~Re~i~~aV 76 (94)
T PRK13259 41 NGLFIAMPSKRTPDGEFRDIAH-PINSDTREKIQDAI 76 (94)
T ss_pred CCeEEECcCcCCCCCcEEEEEc-cCCHHHHHHHHHHH
Confidence 4789999998888887765555 79999999998874
No 96
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=33.29 E-value=1.5e+02 Score=25.55 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 13 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 13 ~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
.+|..+.+..+...+-++++++.+++..|+++||+-+
T Consensus 17 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~ 53 (271)
T cd07359 17 AADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGN 53 (271)
T ss_pred CCCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3445556778888999999999999989999877766
No 97
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=32.78 E-value=1.3e+02 Score=23.18 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=24.5
Q ss_pred CcEEEEcCCCCCC-CCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 1 MDIVIIPAGVPRK-PGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 1 aDiviitag~~~~-~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
.|+|+|..|.... .+.+ .+.+..| ++++.+.+++. ++.+++++
T Consensus 65 pd~v~i~~G~ND~~~~~~-~~~~~~~---l~~li~~~~~~--~~~vil~~ 108 (177)
T cd01822 65 PDLVILELGGNDGLRGIP-PDQTRAN---LRQMIETAQAR--GAPVLLVG 108 (177)
T ss_pred CCEEEEeccCcccccCCC-HHHHHHH---HHHHHHHHHHC--CCeEEEEe
Confidence 4789998887643 2333 3334444 45555666655 45555555
No 98
>PRK09325 coenzyme F420-reducing hydrogenase subunit beta; Validated
Probab=32.66 E-value=1.6e+02 Score=25.73 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=40.0
Q ss_pred hCCCcEEEEecCCCCCcHHHHHHH-HHHh----CCCCCC--CeEEe-c--hhhHHHHHHHHHHHhCCCCCcceeeEe
Q 026051 39 CCPKAIVNLISNPVNSTVPIAAEV-FKKV----GTYDPK--RLLGV-T--MLDVVRANTFVAEVLGLDPREVDVPVV 105 (244)
Q Consensus 39 ~~p~~~iiv~tNPvd~~~~ilt~~-~~~~----~~~~~~--~viG~-t--~ld~~R~~~~la~~l~v~~~~v~~~vi 105 (244)
..+...|.+++.||+ +-+-. +.+. ..+..+ =+||+ | ..+-..++.+|.+++++++.+|..+-+
T Consensus 91 ~~~~~kva~VGtPCq----I~alr~l~~~~~~~~~~~d~l~~~Igl~C~g~~~~~~~~~~l~~~~g~~~~~v~~~~~ 163 (282)
T PRK09325 91 EYGLDKVGIVGTPCQ----IQAVRKAQLYPVGMRHVPDKIALIVGIFCMENFPYEGLKTIVEDHCGVKMEDVKKMDI 163 (282)
T ss_pred hcCCCeEEEEccChH----HHHHHHHHhccccccccccceeEEEcccCCCCCCHHHHHHHHHHHhCCCHHHeeEEEE
Confidence 346689999999999 43321 1111 111122 25788 6 466677888898888998888775443
No 99
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=32.62 E-value=1.1e+02 Score=26.37 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhcCcceeeeccCCCCchhHHHHHHHHHHHHHHHh
Q 026051 128 PTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLR 172 (244)
Q Consensus 128 ~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s~a~a~~~~i~ai~~ 172 (244)
++..+.+.+-++.-|...+... +. .+++.+.++..++++
T Consensus 163 ~~~~~~~~~~~~~~Gk~pv~v~--~d----~pgfi~nRi~~~~~~ 201 (287)
T PRK08293 163 PEVFDTVVAFAKAIGMVPIVLK--KE----QPGYILNSLLVPFLS 201 (287)
T ss_pred HHHHHHHHHHHHHcCCeEEEec--CC----CCCHhHHHHHHHHHH
Confidence 3445555555566665544331 11 234466666666655
No 100
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=31.02 E-value=2.1e+02 Score=20.73 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-c-hhhHHHHHHHHHHHhCCCCCcceeeEecc
Q 026051 30 KTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-T-MLDVVRANTFVAEVLGLDPREVDVPVVGG 107 (244)
Q Consensus 30 ~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t-~ld~~R~~~~la~~l~v~~~~v~~~viG~ 107 (244)
.-++..+++.+.+..++-...|.+ -+.+.+.+. .+ +++|+ + ...+...-..+++..+-...++.. ++|+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~----~l~~~~~~~---~p-d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~i-v~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPE----ELVEALRAE---RP-DVVGISVSMTPNLPEAKRLARAIKERNPNIPI-VVGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HH----HHHHHHHHT---TC-SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEE-EEEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHH----HHHHHHhcC---CC-cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEE-EEEC
Confidence 346667777788877665544444 444444443 22 78999 5 566666666667666554455664 5554
Q ss_pred C
Q 026051 108 H 108 (244)
Q Consensus 108 h 108 (244)
.
T Consensus 89 ~ 89 (121)
T PF02310_consen 89 P 89 (121)
T ss_dssp S
T ss_pred C
Confidence 3
No 101
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=30.89 E-value=95 Score=26.17 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=31.5
Q ss_pred CcEEEEcCCCCCCCC----CCHHHHHHHhHHHHHHHHHHHHhhCCC
Q 026051 1 MDIVIIPAGVPRKPG----MTRDDLFNINAGIVKTLCEGIAKCCPK 42 (244)
Q Consensus 1 aDiviitag~~~~~g----~~r~~l~~~N~~i~~~i~~~i~~~~p~ 42 (244)
+|+||-+||.+...+ ....++.+.|....+.+.+.+++++..
T Consensus 58 ~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 58 ADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred CCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 589999998764322 123567788999999999999988753
No 102
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=30.78 E-value=1.8e+02 Score=22.74 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
.|+|++..|....-.....+.+.+| ++++++.+++.++. +|++...|+.
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~---~~~li~~~~~~~~~-~il~~~~p~~ 108 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDN---IRSMVELAEANGIK-VILASPLPVD 108 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHH---HHHHHHHHHHCCCc-EEEEeCCCcC
Confidence 3788888886543222233345444 55666666665432 3445556665
No 103
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=30.74 E-value=4.1e+02 Score=24.03 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=53.5
Q ss_pred CCHHHHHHH------hHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHH-HHHHHhCCCCC------CCeEEe-c--h
Q 026051 16 MTRDDLFNI------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA-EVFKKVGTYDP------KRLLGV-T--M 79 (244)
Q Consensus 16 ~~r~~l~~~------N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt-~~~~~~~~~~~------~~viG~-t--~ 79 (244)
++..|+++. -.+.+..+.+...++..+ .+.+++-|++. .+ +-+++....-+ .-+||+ | +
T Consensus 111 ~t~eel~~tagsky~~~~~l~~L~ea~~~~g~~-rvavvG~PC~i----~avrk~~~~~~~~~~~~~~i~~~iGlfC~e~ 185 (332)
T COG1035 111 TTPEELLETAGSKYTISPNLSALKEAVRKYGLE-RVAVVGTPCQI----QAVRKLQKFDLGLKHRREKIVYVIGLFCMEN 185 (332)
T ss_pred cChHHHHHhcCCcccCchhHHHHHHHHhhcCCc-eEEEeecchHH----HHHHHHhhccccccccccceEEEEeeecCCC
Confidence 477887772 122344444444455442 67888889993 33 22333333222 224899 6 3
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEec
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVG 106 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG 106 (244)
.+-.-++.+|-+++++++.+|.-.-++
T Consensus 186 f~y~~l~~~l~e~~gvd~~dV~k~di~ 212 (332)
T COG1035 186 FSYEGLKKFLEEDLGVDPEDVEKMDIR 212 (332)
T ss_pred cCHHHHHHHHHHHhCCCHHHeEEEEee
Confidence 555557899999999999999987776
No 104
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=30.68 E-value=64 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 3 iviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.||+.||..++-|.+-.-+--.+-+++........+...+.++|++ ++.
T Consensus 3 ~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~-~~~ 51 (190)
T TIGR03202 3 AIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSSRLSKVIVVI-GEK 51 (190)
T ss_pred EEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhCCCCcEEEEe-CCc
Confidence 5788899887777643222226777888777666555556555555 454
No 105
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=30.50 E-value=1.2e+02 Score=26.59 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 20 DLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 20 ~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
+..+...+-++++++.+++..|+.+ ||++||.-
T Consensus 28 ~~~~~~~~a~~~~~~~i~~~~PD~i-Vvi~~dH~ 60 (277)
T cd07950 28 PAWAPIFDGYEPVKQWLAEQKPDVL-FMVYNDHV 60 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE-EEEcCcHH
Confidence 3446888999999999999999985 66777764
No 106
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.29 E-value=1.1e+02 Score=25.46 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=27.3
Q ss_pred HHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 21 LFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 21 l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
++..+.+-++++.+.+++.+++..|++-++|.+
T Consensus 148 ~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 148 LLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred chhccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 345678888899999988888888899998887
No 107
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.39 E-value=1.5e+02 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHhCCCCCcceeeEeccCCC
Q 026051 87 TFVAEVLGLDPREVDVPVVGGHAG 110 (244)
Q Consensus 87 ~~la~~l~v~~~~v~~~viG~h~g 110 (244)
..|.++|+++++...++.+|-+||
T Consensus 67 ~~lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 67 QALRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred HHHHHHhCCCCCceEEEEEeCCCc
Confidence 477889999999988999999875
No 108
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=29.38 E-value=91 Score=26.59 Aligned_cols=63 Identities=25% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEech------hhHHHHHHHHHHHhCCCC
Q 026051 31 TLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM------LDVVRANTFVAEVLGLDP 97 (244)
Q Consensus 31 ~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~------ld~~R~~~~la~~l~v~~ 97 (244)
-+-+.+++.+.++.|+-+|==+|+. +++.++.++.| +++|+|+.+ -.+..-...++++||++.
T Consensus 8 ~L~~~~~~~g~~~vVvglSGGiDSa--v~A~La~~Alg--~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~ 76 (242)
T PF02540_consen 8 FLRDYVKKSGAKGVVVGLSGGIDSA--VVAALAVKALG--PDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEY 76 (242)
T ss_dssp HHHHHHHHHTTSEEEEEETSSHHHH--HHHHHHHHHHG--GGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhCCCeEEEEcCCCCCHH--HHHHHHHHHhh--hccccccccccccCChHHHHHHHHHHHHhCCCe
Confidence 3344455566777778787777753 44555666653 567888732 112334466777777653
No 109
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=29.19 E-value=60 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 25 NAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 25 N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
=.+-++++++.+++..|+.+ |++|||.-
T Consensus 33 v~~a~~~~~~~v~~~~PDvv-Vvis~dH~ 60 (278)
T PRK13364 33 FFDGFPPVREWLEKVKPDVA-VVFYNDHG 60 (278)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEECCchH
Confidence 37889999999999999985 77787864
No 110
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=29.05 E-value=1.6e+02 Score=25.39 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 13 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 13 ~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
-|+..+++..+...+-++++++.+.+..|+++||+-.
T Consensus 15 ~~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvis~ 51 (268)
T cd07367 15 MSPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVISS 51 (268)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3455667788899999999999999999999755544
No 111
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=28.91 E-value=2e+02 Score=24.33 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEech------hhHHHHHHHHHHHhCCCCCc
Q 026051 28 IVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM------LDVVRANTFVAEVLGLDPRE 99 (244)
Q Consensus 28 i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~------ld~~R~~~~la~~l~v~~~~ 99 (244)
++.-+-+.+++.+.+.+++-+|-=+|+. +++..+.++.+ +.+|+++++ -++......+++.+|++...
T Consensus 10 l~~~l~~~~~~~~~~~vvv~lSGGiDSs--~~a~la~~~~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~ 83 (248)
T cd00553 10 LVLFLRDYLRKSGFKGVVLGLSGGIDSA--LVAALAVRALG--RENVLALFMPSRYSSEETREDAKELAEALGIEHVN 83 (248)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcHHHH--HHHHHHHHHhC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEE
Confidence 3344445555666777888888778865 44555556544 457887732 23556667788888876443
No 112
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=28.86 E-value=1.5e+02 Score=25.64 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHhcCcceeeec
Q 026051 128 PTEIDYLTDRIQNGGTEVVEA 148 (244)
Q Consensus 128 ~~~~~~l~~~v~~~~~~ii~~ 148 (244)
++..+.+.+-++.-|..++-.
T Consensus 164 ~e~~~~~~~~~~~lgk~~v~v 184 (291)
T PRK06035 164 EETFNTTVELSKKIGKIPIEV 184 (291)
T ss_pred HHHHHHHHHHHHHcCCeEEEe
Confidence 444444444444455555544
No 113
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.76 E-value=2.4e+02 Score=24.41 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCcceeeeccCCCCchhHH
Q 026051 79 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 158 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k~~~g~~~~s 158 (244)
.+|...+++.+-..+. ..|++.+++++.|+.. .++.+++.++.+.+.+....++- |-|+.+..
T Consensus 16 ~iD~~~~~~li~~l~~---~Gv~Gl~~~GstGE~~-----------~Lt~eEr~~l~~~~~~~~~~vi~---gvg~~~~~ 78 (279)
T cd00953 16 KIDKEKFKKHCENLIS---KGIDYVFVAGTTGLGP-----------SLSFQEKLELLKAYSDITDKVIF---QVGSLNLE 78 (279)
T ss_pred CcCHHHHHHHHHHHHH---cCCcEEEEcccCCCcc-----------cCCHHHHHHHHHHHHHHcCCEEE---EeCcCCHH
Confidence 5777788888776663 5688877765545311 35677787777766654444554 44555555
Q ss_pred HHHHHHHHHHHHHhccCCCCCeeeee--Eec--CC-----CCCc-cEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 026051 159 MAYAAAKFADACLRGLRGDAGVIECA--YVA--ST-----VTEL-PFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226 (244)
Q Consensus 159 ~a~a~~~~i~ai~~~~~~~~~~~~~~--~~~--~~-----~~~~-~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 226 (244)
.+...++..+++ |-..++... |.. ++ |... .- ++|+++=.. -.. ... +|+.+...+|.+
T Consensus 79 ~ai~~a~~a~~~-----Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~-~lpv~iYn~-P~~-tg~-~l~~~~l~~L~~ 147 (279)
T cd00953 79 ESIELARAAKSF-----GIYAIASLPPYYFPGIPEEWLIKYFTDISS-PYPTFIYNY-PKA-TGY-DINARMAKEIKK 147 (279)
T ss_pred HHHHHHHHHHHc-----CCCEEEEeCCcCCCCCCHHHHHHHHHHHHh-cCCEEEEeC-ccc-cCC-CCCHHHHHHHHh
Confidence 655555555553 344554322 222 11 2111 12 778877321 111 122 677776666653
No 114
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=28.76 E-value=49 Score=20.58 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=18.8
Q ss_pred eEEEcCCceEEEccCCCCCHHHHHHHHHHH
Q 026051 199 KVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228 (244)
Q Consensus 199 Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~ 228 (244)
|++|.++|-... -+ ++.++.+++.+..
T Consensus 23 pv~It~~g~~~a-vl--v~~~~y~~l~~~~ 49 (52)
T TIGR01552 23 PVTITKRGRPVA-VL--VSAADYDRLQETL 49 (52)
T ss_pred CEEEEECCcceE-EE--eeHHHHHHHHHHh
Confidence 888988986443 33 5777777777654
No 115
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=28.42 E-value=3e+02 Score=21.82 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=44.5
Q ss_pred CcEEEEcCCCCCCCCC-----CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 026051 1 MDIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLL 75 (244)
Q Consensus 1 aDiviitag~~~~~g~-----~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~vi 75 (244)
.|+|||..|....... ...+.+..|.. ++...+++. ++.+|++|.|... .++..+..
T Consensus 66 pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~---~ii~~~~~~--~~~~il~tp~~~~-------------~~~~~~~~ 127 (198)
T cd01821 66 GDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLR---RYIAEARAK--GATPILVTPVTRR-------------TFDEGGKV 127 (198)
T ss_pred CCEEEEECCCCCCCCCCCCCCCcHHHHHHHHH---HHHHHHHHC--CCeEEEECCcccc-------------ccCCCCcc
Confidence 4899999997653222 24555666655 444445444 4566666644320 11111100
Q ss_pred EechhhHHHHHHHHHHHhCCCCCccee
Q 026051 76 GVTMLDVVRANTFVAEVLGLDPREVDV 102 (244)
Q Consensus 76 G~t~ld~~R~~~~la~~l~v~~~~v~~ 102 (244)
--..-+-.++...+|++.++..-|++.
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~vD~~~ 154 (198)
T cd01821 128 EDTLGDYPAAMRELAAEEGVPLIDLNA 154 (198)
T ss_pred cccchhHHHHHHHHHHHhCCCEEecHH
Confidence 001222346667888888887666553
No 116
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=28.39 E-value=1.1e+02 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCC--CcHHHHHHHHHHhCCCCCCCeEEec
Q 026051 30 KTLCEGIAKCCPKAIVNLISNPVN--STVPIAAEVFKKVGTYDPKRLLGVT 78 (244)
Q Consensus 30 ~~i~~~i~~~~p~~~iiv~tNPvd--~~~~ilt~~~~~~~~~~~~~viG~t 78 (244)
+++.+.|.+++++.+|.-.|||.. . ...+-+++.+. -+.+++++
T Consensus 122 ~evv~~Ma~~~~~PIIFaLSNPt~~aE---~tpe~a~~~t~--G~ai~AtG 167 (254)
T cd00762 122 PEVIRAXAEINERPVIFALSNPTSKAE---CTAEEAYTATE--GRAIFASG 167 (254)
T ss_pred HHHHHHHhhcCCCCEEEECCCcCCccc---cCHHHHHhhcC--CCEEEEEC
Confidence 477788888888899999999974 2 34455555552 24677774
No 117
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=27.64 E-value=26 Score=25.70 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCC--CcEEEEecCCC-CCcHHHHHHHHHHhCCCCCCCeEEe
Q 026051 26 AGIVKTLCEGIAKCCP--KAIVNLISNPV-NSTVPIAAEVFKKVGTYDPKRLLGV 77 (244)
Q Consensus 26 ~~i~~~i~~~i~~~~p--~~~iiv~tNPv-d~~~~ilt~~~~~~~~~~~~~viG~ 77 (244)
.+.+.++...++.... ..+.+.-+.|. ...-+-+.+++.......+..-+.+
T Consensus 31 ~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~~~~~~i~i 85 (119)
T PF13394_consen 31 IEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKERGPEIKIRI 85 (119)
T ss_dssp HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-----EEEE
T ss_pred HhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhhCCCceEEE
Confidence 3444445555555554 45667777997 1112234555555554433345555
No 118
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=27.48 E-value=1.1e+02 Score=22.08 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=31.1
Q ss_pred CccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHH
Q 026051 192 ELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230 (244)
Q Consensus 192 ~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~ 230 (244)
.+.|+++|-.=.++|-.+=+-- |+|.+-+++++.+...
T Consensus 41 ~GlfVAMPSrrt~dgEFrDI~H-PI~~~~R~kIq~aVl~ 78 (95)
T COG2088 41 NGLFVAMPSRRTPDGEFRDIAH-PINSDTREKIQDAVLK 78 (95)
T ss_pred cceEEEccCccCCCcchhhccC-cCCHHHHHHHHHHHHH
Confidence 5789999999999998765444 7999999999988643
No 119
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=27.07 E-value=25 Score=27.14 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecC
Q 026051 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISN 50 (244)
Q Consensus 3 iviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tN 50 (244)
+||++||...+-|....-+--.+-+++..+...+.+.+++-++++..+
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhccCCceEEEecCh
Confidence 478888977654432211111555677777777777776665554444
No 120
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=26.93 E-value=1.4e+02 Score=26.22 Aligned_cols=35 Identities=11% Similarity=-0.108 Sum_probs=28.7
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 17 TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 17 ~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.+.+..+...+-++++++.+++..|+.+||+ +||.
T Consensus 25 ~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii-~~dH 59 (284)
T PRK13366 25 TGEPYWQPVFKGYEFSKQWEKEEKPDVIFLV-YNDH 59 (284)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCEEEEE-cCCc
Confidence 3667788999999999999999999996555 4465
No 121
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=26.39 E-value=3.3e+02 Score=21.80 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=36.8
Q ss_pred HHHHHHHhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCC--CCeEEechh----hHHHHHHHHHHHhCCCCCcceee
Q 026051 31 TLCEGIAKCCP-KAIVNLISNPVNSTVPIAAEVFKKVGTYDP--KRLLGVTML----DVVRANTFVAEVLGLDPREVDVP 103 (244)
Q Consensus 31 ~i~~~i~~~~p-~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~--~~viG~t~l----d~~R~~~~la~~l~v~~~~v~~~ 103 (244)
++...+++... +..+.++||... .......+..|+.. ..+++.... +...+-..+.++++++|++ +.
T Consensus 79 g~~~~L~~L~~~g~~~~i~Sn~~~----~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~--~l 152 (205)
T TIGR01454 79 GVPELLAELRADGVGTAIATGKSG----PRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPED--AV 152 (205)
T ss_pred CHHHHHHHHHHCCCeEEEEeCCch----HHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhh--eE
Confidence 33334443332 346788888654 22233334445532 345554211 1234445566778887765 46
Q ss_pred EeccC
Q 026051 104 VVGGH 108 (244)
Q Consensus 104 viG~h 108 (244)
++|.+
T Consensus 153 ~igD~ 157 (205)
T TIGR01454 153 MVGDA 157 (205)
T ss_pred EEcCC
Confidence 78765
No 122
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=24.98 E-value=4.5e+02 Score=22.95 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=57.6
Q ss_pred CcEEEEcCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhC-------CC-cEEEEecCCCCCc-------------HH
Q 026051 1 MDIVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEGIAKCC-------PK-AIVNLISNPVNST-------------VP 57 (244)
Q Consensus 1 aDiviitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~-------p~-~~iiv~tNPvd~~-------------~~ 57 (244)
.|+||-+||.... +.....+.+..|+.-...+.+.+.++. .+ ..+|.+|-..-.- .+
T Consensus 74 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~ 153 (352)
T PRK10084 74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELP 153 (352)
T ss_pred CCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCC
Confidence 4899999986432 223346789999999999999988751 12 2444444210000 00
Q ss_pred HHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCCCCCcce-eeEeccC
Q 026051 58 IAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGH 108 (244)
Q Consensus 58 ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v~~~~v~-~~viG~h 108 (244)
.++ +...+.+...-|.+-....++-..+++.++++.--++ ..|.|.+
T Consensus 154 ~~~----E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 154 LFT----ETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred Ccc----ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 011 1112233344555444445555556777787665566 5677865
No 123
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.88 E-value=1.6e+02 Score=27.48 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.3
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
||++|| |.+.... --++....++. +..+++.+|+++|++.+--+
T Consensus 40 ADiiiiNTC~v~~~-------A~~~~~~~i~~-~~~~k~~~p~~~ivv~GC~a 84 (446)
T PRK14337 40 ARVFIVNTCSVRDK-------PEQKVYSLLGR-IRHATKKNPDVFVAVGGCVA 84 (446)
T ss_pred CCEEEEeccCeecH-------HHHHHHHHHHH-HHHHHHhCCCCEEEEECCcc
Confidence 688888 6665321 12222333333 34467788999888877433
No 124
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=24.86 E-value=2.6e+02 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=34.5
Q ss_pred CcEEEEcCCCCCCCC-CCHHHHHHHhHHHHHHHHHHHHhhCCCc
Q 026051 1 MDIVIIPAGVPRKPG-MTRDDLFNINAGIVKTLCEGIAKCCPKA 43 (244)
Q Consensus 1 aDiviitag~~~~~g-~~r~~l~~~N~~i~~~i~~~i~~~~p~~ 43 (244)
+|+||-+|+...-.+ ..+.++..-|+.-.+.+.+.+.+.+-+.
T Consensus 67 ~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr 110 (280)
T PF01073_consen 67 VDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKR 110 (280)
T ss_pred CceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 689999998654444 5678899999999999999999875443
No 125
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=24.77 E-value=1.6e+02 Score=26.04 Aligned_cols=32 Identities=9% Similarity=-0.028 Sum_probs=24.9
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEe
Q 026051 17 TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLI 48 (244)
Q Consensus 17 ~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~ 48 (244)
.|.....+-.+-++++++.+++..|+++||+-
T Consensus 27 ~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVViS 58 (294)
T cd07372 27 RSQGGWEQLRWAYERARESIEALKPDVLLVHS 58 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 34445667778999999999999999975543
No 126
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=24.70 E-value=3.8e+02 Score=22.83 Aligned_cols=120 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred EEEEcCCCCCCCCCCHHHHHH--HhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-ch
Q 026051 3 IVIIPAGVPRKPGMTRDDLFN--INAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TM 79 (244)
Q Consensus 3 iviitag~~~~~g~~r~~l~~--~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ 79 (244)
.||..||...+-|...-.++. .+-+++..-.+.+..+.+=..|||++||-+ ..+ +.+...+...+.+-+ .-
T Consensus 7 ~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~-----~~~-~~~~~~~~~~~~v~~v~G 80 (230)
T COG1211 7 AVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPED-----DPY-FEKLPKLSADKRVEVVKG 80 (230)
T ss_pred EEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhh-----hHH-HHHhhhhccCCeEEEecC
Confidence 456678865544432211111 334444444444444544357888888844 122 222221333343333 22
Q ss_pred hhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCc
Q 026051 80 LDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG 142 (244)
Q Consensus 80 ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~ 142 (244)
-+ .|-.+..+-...++. | ++..|.+...++| ..+.+..+++.+...+.+
T Consensus 81 G~-~R~~SV~~gL~~~~~----------~-~~~~VlvHDaaRP--f~~~~~i~~li~~~~~~~ 129 (230)
T COG1211 81 GA-TRQESVYNGLQALSK----------Y-DSDWVLVHDAARP--FLTPKLIKRLIELADKYG 129 (230)
T ss_pred Cc-cHHHHHHHHHHHhhc----------c-CCCEEEEeccccC--CCCHHHHHHHHHhhccCC
Confidence 22 355544443333332 4 2455555555665 355666666664444333
No 127
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=24.67 E-value=1.4e+02 Score=26.41 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhCCC--cEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEe-chhhHHHHHHHHHHHhCCCC
Q 026051 28 IVKTLCEGIAKCCPK--AIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDP 97 (244)
Q Consensus 28 i~~~i~~~i~~~~p~--~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~-t~ld~~R~~~~la~~l~v~~ 97 (244)
-|.++-.++.-+.++ .+||-+||-+| ++--.+.+.+-++++-=+-. ....-+|.-+.=+++++|++
T Consensus 294 TMLELLNQLDGFss~~~vKviAATNRvD----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~ 362 (424)
T KOG0652|consen 294 TMLELLNQLDGFSSDDRVKVIAATNRVD----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD 362 (424)
T ss_pred HHHHHHHhhcCCCCccceEEEeeccccc----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC
Confidence 356667777777764 68999999999 44444455555654322333 33333455566777777764
No 128
>PF14164 YqzH: YqzH-like protein
Probab=24.32 E-value=96 Score=20.91 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 026051 214 GPLNEYERAGLEKAKKELAG 233 (244)
Q Consensus 214 ~~L~~~E~~~l~~s~~~l~~ 233 (244)
.||+++|++.|.+..+..++
T Consensus 24 ~pls~~E~~~L~~~i~~~~~ 43 (64)
T PF14164_consen 24 MPLSDEEWEELCKHIQERKN 43 (64)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 38999999999998876664
No 129
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=24.28 E-value=1.3e+02 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=15.5
Q ss_pred HHHHHHHHhhCCCcEEEEecCCCC
Q 026051 30 KTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 30 ~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
+.+.+.+++++|+..+++++|=.|
T Consensus 93 ~~w~~~i~~~~~~~~iilVgnK~D 116 (178)
T cd04131 93 KKWRGEIQEFCPNTKVLLVGCKTD 116 (178)
T ss_pred HHHHHHHHHHCCCCCEEEEEEChh
Confidence 344555566667766777777777
No 130
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=24.10 E-value=1.5e+02 Score=26.71 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.8
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 17 TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 17 ~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.+.+..+...+-++++++.+++..|+.+||+ +||.
T Consensus 23 ~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~-~sdH 57 (329)
T cd07369 23 PSPDVRARTEEATLKLGRTLTAARPDVIIAF-LDDH 57 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCEEEEE-cCCc
Confidence 4667888999999999999999999997555 4454
No 131
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=24.08 E-value=1.3e+02 Score=23.54 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhC-C-CcEEEEecCCCC-CcHHHHHHHHHHhC-CCCCCCeEEe-c-hhhHHHHHHHHHHHhCCCCCccee
Q 026051 29 VKTLCEGIAKCC-P-KAIVNLISNPVN-STVPIAAEVFKKVG-TYDPKRLLGV-T-MLDVVRANTFVAEVLGLDPREVDV 102 (244)
Q Consensus 29 ~~~i~~~i~~~~-p-~~~iiv~tNPvd-~~~~ilt~~~~~~~-~~~~~~viG~-t-~ld~~R~~~~la~~l~v~~~~v~~ 102 (244)
+.++...+.... + .++.+.-+.|.. .....+.+++++.. .++...|.-. + .++. +.....+.+ +.++.
T Consensus 52 ~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~i~~~tGy~~ee--l~~~~~~~l----~~~Dv 125 (154)
T PRK11121 52 EDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKDIWVWTGYKLDE--LNAAQRQVV----DLIDV 125 (154)
T ss_pred HHHHHHHHHHhCCCCCcEEEECCCccchhhHHHHHHHHHHHHHHCCCCCEEEecCCCHHH--HHHHHHHHH----hhCCE
Confidence 344445554443 2 688899999973 11224444444321 1333456544 3 3443 221111111 34667
Q ss_pred eEeccC
Q 026051 103 PVVGGH 108 (244)
Q Consensus 103 ~viG~h 108 (244)
.|-|.+
T Consensus 126 lvDG~~ 131 (154)
T PRK11121 126 LVDGKF 131 (154)
T ss_pred EEechh
Confidence 777765
No 132
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=23.97 E-value=1.7e+02 Score=27.15 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEE--ecCCCCCcH
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNL--ISNPVNSTV 56 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv--~tNPvd~~~ 56 (244)
||+++|+-|.|.++.-+ . +...+...++.+.++.++..+|| -|=|+.+.-
T Consensus 77 adv~fIavgTP~~~dg~-a-----Dl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~ 128 (414)
T COG1004 77 ADVVFIAVGTPPDEDGS-A-----DLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTE 128 (414)
T ss_pred CCEEEEEcCCCCCCCCC-c-----cHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchH
Confidence 69999999998876322 2 25567777777777776533333 245666443
No 133
>PRK00768 nadE NAD synthetase; Reviewed
Probab=23.81 E-value=2.7e+02 Score=24.27 Aligned_cols=81 Identities=19% Similarity=0.087 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCc-HHHHHHHHHHhCC----CCCCCeEEechh----hHH
Q 026051 13 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNST-VPIAAEVFKKVGT----YDPKRLLGVTML----DVV 83 (244)
Q Consensus 13 ~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~-~~ilt~~~~~~~~----~~~~~viG~t~l----d~~ 83 (244)
++.++-....+. ++.-+-..+++.+.+++|+=+|-=.|+. +..++..+...-+ .|..+++|+.+- ++.
T Consensus 13 ~~~~~~~~~~~~---i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~ 89 (268)
T PRK00768 13 KPTIDPEEEIRR---RVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADE 89 (268)
T ss_pred CCCCCHHHHHHH---HHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCH
Confidence 455555444433 4444555566677899999999888843 3233332222222 233458888432 224
Q ss_pred HHHHHHHHHhCCC
Q 026051 84 RANTFVAEVLGLD 96 (244)
Q Consensus 84 R~~~~la~~l~v~ 96 (244)
.-...+++.+|+.
T Consensus 90 ~da~~la~~lgi~ 102 (268)
T PRK00768 90 DDAQDALAFIQPD 102 (268)
T ss_pred HHHHHHHHhcCCC
Confidence 5667788998873
No 134
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=23.76 E-value=1.1e+02 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecCC
Q 026051 26 AGIVKTLCEGIAKCCPKAIVNLISNP 51 (244)
Q Consensus 26 ~~i~~~i~~~i~~~~p~~~iiv~tNP 51 (244)
.++.+.|+.+|.++.|++.++++.|-
T Consensus 88 ~~~a~kIadki~~~~~~a~ll~vdn~ 113 (182)
T cd08060 88 SPVAKKIADKIAENFSNACLLMVDNE 113 (182)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeCc
Confidence 37889999999999999999999984
No 135
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=23.39 E-value=2.6e+02 Score=22.60 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHhHHHHHHHHHHHHhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 026051 14 PGMTRDDLFNINAGIVKTLCEGIAKC-CPKAIVNLISNPVNSTVPIAAEVFKKVGTYDP 71 (244)
Q Consensus 14 ~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~ 71 (244)
.|++-.++..+-.+.++++.+.+.+. .++..+++|| --. ++..++..+.|+|.
T Consensus 115 ~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVs-Hg~----~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 115 GGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACS-HGD----VIKSVLADALGMHL 168 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEe-CCh----HHHHHHHHHhCCCH
Confidence 46777888888888777777665433 3555566666 233 34333444445443
No 136
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.24 E-value=1.5e+02 Score=27.76 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=37.5
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHH-HhCCCCCCCeEEec
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFK-KVGTYDPKRLLGVT 78 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~-~~~~~~~~~viG~t 78 (244)
||+||| |.++..++. .+....++.+.. .++.+|+++|++.+--+. ...+.+. +.++.+ -|+|-.
T Consensus 44 ADiiiiNTC~v~~~a~-------~~~~~~i~~~~~-~k~~~p~~~vvv~Gc~a~----~~~~~~~~~~p~vD--~v~g~~ 109 (448)
T PRK14333 44 ADLVLYNTCTIRDNAE-------QKVYSYLGRQAK-RKHKNPDLTLVVAGCVAQ----QEGESLLRRVPELD--LVMGPQ 109 (448)
T ss_pred CCEEEEEeeeeeehHH-------HHHHHHHHHHHH-HHhcCCCCEEEEECccCc----cCHHHHHhcCCCCC--EEECCC
Confidence 688888 777643221 122223333322 256779998888774444 3334333 334432 366654
Q ss_pred hhhHHHHHHHHHH
Q 026051 79 MLDVVRANTFVAE 91 (244)
Q Consensus 79 ~ld~~R~~~~la~ 91 (244)
.. .++...+..
T Consensus 110 ~~--~~~~~ll~~ 120 (448)
T PRK14333 110 HA--NRLEDLLEQ 120 (448)
T ss_pred CH--HHHHHHHHH
Confidence 32 244444443
No 137
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=23.14 E-value=4.6e+02 Score=22.16 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeEEechhhHHHHHHHHHHHhCC
Q 026051 27 GIVKTLCEGIAKCCPK-AIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGL 95 (244)
Q Consensus 27 ~i~~~i~~~i~~~~p~-~~iiv~tN-Pvd~~~~ilt~~~~~~~~~~~~~viG~t~ld~~R~~~~la~~l~v 95 (244)
+-+.++..++.+++.+ +++.+-.| +-|.+. .+...+..... ....+|++++-+ +..+.++..+|-
T Consensus 132 eeL~~~l~~m~~~gaDI~KiAvmp~~~~Dvl~-~l~~~~~~~~~-~~~p~i~isMG~--~iSRi~~~~fGS 198 (229)
T PRK01261 132 DNMPAILDIMNEKNPDYVKVACNYNDNKKFVD-DLQYILMKKDE-KYKPIVFIPMGR--EFLRIFSGYYVS 198 (229)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCChHHHHH-HHHHHHHHHhc-CCCCEEEEECCc--HHHHHHHHHHCC
Confidence 3456777788888766 56555332 223121 23232333222 334688887766 788888888864
No 138
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=23.00 E-value=2.1e+02 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHhcC---cceeeeccCCCCchhHHHHHHHHHHHH
Q 026051 128 PTEIDYLTDRIQNG---GTEVVEAKTGAGSATLSMAYAAAKFAD 168 (244)
Q Consensus 128 ~~~~~~l~~~v~~~---~~~ii~~k~~~g~~~~s~a~a~~~~i~ 168 (244)
+++.+++.+-+++. .+-++....|+|.|+.++ +++.|++
T Consensus 108 ~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~M--v~~~li~ 149 (149)
T PF14566_consen 108 PEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFM--VMYDLIR 149 (149)
T ss_dssp HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH--HHHHHhC
Confidence 45678888877764 356677778889987655 6666653
No 139
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=22.98 E-value=1.5e+02 Score=22.03 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 26 AGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 26 ~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.+.+.++.+.+.+.....+.+.-+.|.
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~GGEPl 64 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLTGGEPL 64 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEECSTGG
T ss_pred chhhhhhhhHHhcCCceEEEEcCCCee
Confidence 667777777877766677777777884
No 140
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=22.97 E-value=1.6e+02 Score=23.59 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=57.5
Q ss_pred CceeeeccccCCCC----------CCCChhHH-HHHHHHHhcCc--------ceeeeccCCCCchhHHHHHHHHHHHHHH
Q 026051 110 GVTILPLLSQVKPS----------CSLTPTEI-DYLTDRIQNGG--------TEVVEAKTGAGSATLSMAYAAAKFADAC 170 (244)
Q Consensus 110 g~~~vp~~s~~~~~----------~~~~~~~~-~~l~~~v~~~~--------~~ii~~k~~~g~~~~s~a~a~~~~i~ai 170 (244)
++..+..|+..... +.-+..++ +.|.+.++.+. +.|++.. -+.|+++. ++++.
T Consensus 23 ~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d----DAi~gt~~----fVrss 94 (160)
T PF09695_consen 23 DKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD----DAIWGTGG----FVRSS 94 (160)
T ss_pred CcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc----cccccchH----HHHHH
Confidence 35666778775432 22333333 45666666543 2345432 35566654 34444
Q ss_pred HhccCCCCCeeeee--EecCC--------CCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHH
Q 026051 171 LRGLRGDAGVIECA--YVAST--------VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEK 226 (244)
Q Consensus 171 ~~~~~~~~~~~~~~--~~~~~--------~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~ 226 (244)
+.. .+..+|-+ +++.. +++ .=|.=++++|+|....+....|+++|.++.-+
T Consensus 95 ~e~---~kk~~p~s~~vlD~~G~~~~aW~L~~--~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 95 AED---SKKEFPWSQFVLDSNGVVRKAWQLQE--ESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred HHH---hhhhCCCcEEEEcCCCceeccccCCC--CCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 442 34455543 34332 222 12445689999988777656999999887654
No 141
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.80 E-value=1.8e+02 Score=22.92 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCC---CcEEEEecC-CCCCcHHHHHHHHHHhCCCCCCCeEEe
Q 026051 30 KTLCEGIAKCCP---KAIVNLISN-PVNSTVPIAAEVFKKVGTYDPKRLLGV 77 (244)
Q Consensus 30 ~~i~~~i~~~~p---~~~iiv~tN-Pvd~~~~ilt~~~~~~~~~~~~~viG~ 77 (244)
.+..+.|.+..| ..++...+| +.| +.+| +.-|+|++|++=+
T Consensus 104 ~~~l~~i~~~~~~~~~~f~~~~gn~~~D----~~~y---~~~gi~~~~i~~i 148 (157)
T smart00775 104 IACLRDIKSLFPPQGNPFYAGFGNRITD----VISY---SAVGIPPSRIFTI 148 (157)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCchh----HHHH---HHcCCChhhEEEE
Confidence 445566666665 245555666 788 6654 5568888888654
No 142
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.80 E-value=3.2e+02 Score=24.04 Aligned_cols=123 Identities=23% Similarity=0.200 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHhCCCCCcceeeEeccCCCceeeeccccCCCCCCCChhHHHHHHHHHhcCc-c--eeeeccCCCCch
Q 026051 79 MLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGG-T--EVVEAKTGAGSA 155 (244)
Q Consensus 79 ~ld~~R~~~~la~~l~v~~~~v~~~viG~h~g~~~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~-~--~ii~~k~~~g~~ 155 (244)
.+|-..+++.+..... .-|++.++.+..|+.. .++.+++.++.+.+++.. . -++. |-|+.
T Consensus 21 ~vD~~a~~~lv~~li~---~Gv~gi~~~GttGE~~-----------~Ls~eEr~~v~~~~v~~~~grvpvia---G~g~~ 83 (299)
T COG0329 21 SVDEEALRRLVEFLIA---AGVDGLVVLGTTGESP-----------TLTLEERKEVLEAVVEAVGGRVPVIA---GVGSN 83 (299)
T ss_pred CcCHHHHHHHHHHHHH---cCCCEEEECCCCccch-----------hcCHHHHHHHHHHHHHHHCCCCcEEE---ecCCC
Confidence 3677788888877764 3388666655545422 256677777766666533 2 2565 55777
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCeeeee-E-ecCC----C--CCc--cEEEEeEEEcCCceEEEccCCCCCHHHHHHHH
Q 026051 156 TLSMAYAAAKFADACLRGLRGDAGVIECA-Y-VAST----V--TEL--PFFASKVRLGRAGIEEIYSLGPLNEYERAGLE 225 (244)
Q Consensus 156 ~~s~a~a~~~~i~ai~~~~~~~~~~~~~~-~-~~~~----~--~~~--~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~ 225 (244)
+...|...++..+.+ |-++++.+. + .... | ... ...+.|+++= | +-.... .+|+++...+|.
T Consensus 84 ~t~eai~lak~a~~~-----Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilY-N-~P~~tg-~~l~~e~i~~la 155 (299)
T COG0329 84 STAEAIELAKHAEKL-----GADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILY-N-IPSRTG-VDLSPETIARLA 155 (299)
T ss_pred cHHHHHHHHHHHHhc-----CCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEE-e-CccccC-CCCCHHHHHHHh
Confidence 778888888888876 455665543 2 2221 1 111 1337787762 1 111112 367777777776
Q ss_pred H
Q 026051 226 K 226 (244)
Q Consensus 226 ~ 226 (244)
+
T Consensus 156 ~ 156 (299)
T COG0329 156 E 156 (299)
T ss_pred c
Confidence 5
No 143
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.67 E-value=1.6e+02 Score=27.12 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=31.9
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 17 TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 17 ~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
||...+.++.+++.+.+..+++..|+..+++-+.|..
T Consensus 197 SR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~ 233 (381)
T COG0763 197 SRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK 233 (381)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH
Confidence 5778899999999999999999999988887775543
No 144
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=1.3e+02 Score=28.30 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=39.6
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCCeEEech
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTM 79 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd~~~~ilt~~~~~~~~~~~~~viG~t~ 79 (244)
||+||| |.+...++ -+-+.+....+++..|+++|+|.+ |++-.--+.+.+.+..+ -|+|...
T Consensus 41 ADvviiNTC~V~~~a-----------~~k~~~~i~~~~~~~p~~~iiVtG----C~aq~~~~i~~~~p~vd--~v~G~~~ 103 (437)
T COG0621 41 ADVVIINTCAVREKA-----------EQKVRSAIGELKKLKPDAKIIVTG----CLAQAEEEILERAPEVD--IVLGPQN 103 (437)
T ss_pred CCEEEEecCeeeehH-----------HHHHHHHHHHHHHhCCCCEEEEeC----CccccCHHHHhhCCCce--EEECCcc
Confidence 688888 77764321 122334444555556999999988 22212233444544432 4677744
Q ss_pred hhHHHHHHHHHHH
Q 026051 80 LDVVRANTFVAEV 92 (244)
Q Consensus 80 ld~~R~~~~la~~ 92 (244)
++ |+-..|-+.
T Consensus 104 ~~--~~~~~i~~~ 114 (437)
T COG0621 104 KE--RLPEAIEKA 114 (437)
T ss_pred HH--HHHHHHHHH
Confidence 43 545555544
No 145
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.55 E-value=2.1e+02 Score=26.87 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=12.7
Q ss_pred HHHHHhhCCCcEEEEec
Q 026051 33 CEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 33 ~~~i~~~~p~~~iiv~t 49 (244)
...+++.+|+++|++.+
T Consensus 86 ~~~~k~~~p~~~ivvgG 102 (467)
T PRK14329 86 FNALKKKNPKLIVGVLG 102 (467)
T ss_pred HHHHHhhCCCcEEEEEC
Confidence 35667888998877766
No 146
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=21.46 E-value=4.2e+02 Score=23.44 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=54.2
Q ss_pred cEEEEcCCCCCCC--CCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec----CCCCCcHHHHHHHHHHhCCCCCCCeE
Q 026051 2 DIVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS----NPVNSTVPIAAEVFKKVGTYDPKRLL 75 (244)
Q Consensus 2 Diviitag~~~~~--g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t----NPvd~~~~ilt~~~~~~~~~~~~~vi 75 (244)
|||+=+|..-.-| ...-.+.+..|+-=-+.+++...+++-+-+|.+-| ||.+ +|
T Consensus 79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn----vm---------------- 138 (293)
T PF02719_consen 79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN----VM---------------- 138 (293)
T ss_dssp SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S----HH----------------
T ss_pred CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc----HH----------------
Confidence 7777777754332 23567889999999999999999998887777766 5555 33
Q ss_pred EechhhHHHHHHHHHHHhCCCC-------Ccce-eeEeccCCCceeeecccc
Q 026051 76 GVTMLDVVRANTFVAEVLGLDP-------REVD-VPVVGGHAGVTILPLLSQ 119 (244)
Q Consensus 76 G~t~ld~~R~~~~la~~l~v~~-------~~v~-~~viG~h~g~~~vp~~s~ 119 (244)
|.| -|+.-.+-..++-.. ..|+ +=|+|..| |.+|.|.+
T Consensus 139 Gat----KrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~G--SVip~F~~ 184 (293)
T PF02719_consen 139 GAT----KRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRG--SVIPLFKK 184 (293)
T ss_dssp HHH----HHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTT--SCHHHHHH
T ss_pred HHH----HHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCC--cHHHHHHH
Confidence 332 233333333333322 3355 67888884 88888765
No 147
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.44 E-value=91 Score=24.33 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 3 IVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 3 iviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
.||+.+|..++-|..-.-+--.+.+++..+.+.+.+.+.+-+ ++++++.+
T Consensus 3 ~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~~~~~i-~vv~~~~~ 52 (186)
T cd04182 3 AIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAAGLSRV-IVVLGAEA 52 (186)
T ss_pred EEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhCCCCcE-EEECCCcH
Confidence 567788877665532111111567777788888877655544 55565544
No 148
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.28 E-value=1.1e+02 Score=22.51 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCCcceeeE
Q 026051 83 VRANTFVAEVLGLDPREVDVPV 104 (244)
Q Consensus 83 ~R~~~~la~~l~v~~~~v~~~v 104 (244)
.++...++++||++|++|...+
T Consensus 79 ~~i~~~l~~~lgi~~~rv~I~f 100 (116)
T PTZ00397 79 AAITKILASHLKVKSERVYIEF 100 (116)
T ss_pred HHHHHHHHHHhCcCcccEEEEE
Confidence 4566788999999999998644
No 149
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=21.19 E-value=3.5e+02 Score=19.98 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhCCCcEEE
Q 026051 29 VKTLCEGIAKCCPKAIVN 46 (244)
Q Consensus 29 ~~~i~~~i~~~~p~~~ii 46 (244)
+..+++.+++..|+..|+
T Consensus 55 ~~~~~~~ik~~~p~~~iv 72 (127)
T cd02068 55 ALELAKIAKEVLPNVIVV 72 (127)
T ss_pred HHHHHHHHHHHCCCCEEE
Confidence 334444444444444333
No 150
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.06 E-value=3.1e+02 Score=25.63 Aligned_cols=32 Identities=38% Similarity=0.394 Sum_probs=17.4
Q ss_pred eEEe--chhh-HHHHH--HHHHHHhCCCCCcceeeEeccC
Q 026051 74 LLGV--TMLD-VVRAN--TFVAEVLGLDPREVDVPVVGGH 108 (244)
Q Consensus 74 viG~--t~ld-~~R~~--~~la~~l~v~~~~v~~~viG~h 108 (244)
+.|+ |.+| +.|.- -.++..++++ |.....|++
T Consensus 241 i~giIlTKlD~~~~~G~~lsi~~~~~~P---I~fi~~Ge~ 277 (428)
T TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKP---IKFIGVGEK 277 (428)
T ss_pred CCEEEEeCccCcccccHHHHHHHHHCcC---EEEEeCCCC
Confidence 4454 6778 33333 3344666766 444555666
No 151
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.00 E-value=77 Score=27.67 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecCCC
Q 026051 26 AGIVKTLCEGIAKCCPKAIVNLISNPV 52 (244)
Q Consensus 26 ~~i~~~i~~~i~~~~p~~~iiv~tNPv 52 (244)
.+-++++++.+++..|+.+ ||+|||.
T Consensus 34 ~~a~~~~~~~v~~~~PD~i-Vvis~dH 59 (276)
T cd07949 34 FDGFPPVHDWLEKAKPDVA-VVFYNDH 59 (276)
T ss_pred HHHHHHHHHHHHHcCCCEE-EEECCcH
Confidence 6889999999999999985 6777776
No 152
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.95 E-value=1.5e+02 Score=24.37 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.8
Q ss_pred CcEEEEcCCCCCC
Q 026051 1 MDIVIIPAGVPRK 13 (244)
Q Consensus 1 aDiviitag~~~~ 13 (244)
||+++++.....+
T Consensus 75 aDvllV~G~vt~~ 87 (183)
T PRK06411 75 ADLMIVAGTLTNK 87 (183)
T ss_pred eeEEEEEeCCCcc
Confidence 6888888777554
No 153
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=20.93 E-value=3.3e+02 Score=23.18 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=34.0
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
.|+||-+|+.+.....+..+.+..|..-...+.+.+.+.+. .++.+|
T Consensus 67 ~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 67 IEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred CCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 48899999865433345566788999999999999888753 355555
No 154
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=20.85 E-value=2.1e+02 Score=26.59 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=24.9
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVN 53 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~tNPvd 53 (244)
||++|| |.++...+ -.+....+.. ++.+++.+|+++|++.+--+.
T Consensus 38 aDv~iiNTC~v~~~a-------~~k~~~~i~~-~~~~k~~~~~~~ivv~GC~a~ 83 (438)
T TIGR01574 38 ADVLLINTCSVREKA-------EHKVFGELGG-FKKLKKKNPDLIIGVCGCMAS 83 (438)
T ss_pred CCEEEEeccCeechH-------HHHHHHHHHH-HHHHHhhCCCcEEEEeCcccc
Confidence 688888 56653221 1111222222 456677789888888774333
No 155
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.61 E-value=1e+02 Score=28.68 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=23.2
Q ss_pred CcEEEE-cCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 1 MDIVII-PAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 1 aDivii-tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
||++|| |.+....+. .+....+.. ++.+++.+|+++|++.+
T Consensus 38 aDviiiNTC~v~~~a~-------~k~~~~i~~-~~~~k~~~p~~~ivv~G 79 (437)
T PRK14331 38 ADLILVNTCTIREKPD-------QKVLSHLGE-YKKIKEKNPNALIGVCG 79 (437)
T ss_pred CCEEEEeCcceecHHH-------HHHHHHHHH-HHHHHHhCCCCEEEEEc
Confidence 688888 556532211 111122221 35667888999888877
No 156
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=20.50 E-value=3.4e+02 Score=23.22 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS 49 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t 49 (244)
+|+||-+|+.+.....+..+.++.|......+.+.+.+.+. .+|.+|
T Consensus 69 ~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 69 IEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred ccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 48889898865433445556788899999999999888753 355554
No 157
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=20.45 E-value=3.5e+02 Score=24.15 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEec--CCCCCc
Q 026051 1 MDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS--NPVNST 55 (244)
Q Consensus 1 aDiviitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~~~iiv~t--NPvd~~ 55 (244)
+|+.||+.|.- ....-+-|+.+++.+=++-||.+. .|.|..
T Consensus 193 ~D~tiiA~G~m--------------v~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~ 235 (312)
T COG3958 193 SDLTIIATGVM--------------VAEALEAAEILKKEGISAAVINMFTIKPIDEQ 235 (312)
T ss_pred CceEEEecCcc--------------hHHHHHHHHHHHhcCCCEEEEecCccCCCCHH
Confidence 47778876641 222345677788888777777665 788854
No 158
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=20.21 E-value=1.3e+02 Score=20.84 Aligned_cols=18 Identities=44% Similarity=0.337 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 026051 215 PLNEYERAGLEKAKKELA 232 (244)
Q Consensus 215 ~L~~~E~~~l~~s~~~l~ 232 (244)
+|+++|++.|+.+.-.||
T Consensus 54 NL~~~E~~lL~~~L~eLR 71 (74)
T PF08899_consen 54 NLDEEEERLLESALYELR 71 (74)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 899999999999988876
Done!