RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 026051
(244 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 395 bits (1016), Expect = e-140
Identities = 219/243 (90%), Positives = 229/243 (94%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AIVNLISNPVNSTVPIAAE
Sbjct: 78 DLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAE 137
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
VFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPVVGGHAGVTILPLLSQVK
Sbjct: 138 VFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK 197
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P S T EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA KFADACLRGLRGDAGVI
Sbjct: 198 PPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVI 257
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
ECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GLEKAKKELAGSI+KGVSF
Sbjct: 258 ECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSF 317
Query: 242 VRK 244
+R
Sbjct: 318 IRS 320
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 386 bits (994), Expect = e-137
Identities = 139/243 (57%), Positives = 171/243 (70%), Gaps = 1/243 (0%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AGV RKPGM R DLFN+NAGIVK L + +AK CPKA + +I+NPVN+TV IAAE
Sbjct: 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAE 130
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
V KK G YD +L GVT LD++R+NTFVAE+ G P EV+VPV+GGH+GVTILPLLSQV
Sbjct: 131 VLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV- 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P S T E+ LT RIQN GTEVVEAK G GSATLSM AAA+F + +R L+G+ GV+
Sbjct: 190 PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
ECAYV FF+ + LG+ G+EE S+G L+ +E+ LE L I G F
Sbjct: 250 ECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEF 309
Query: 242 VRK 244
V K
Sbjct: 310 VNK 312
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 386 bits (993), Expect = e-137
Identities = 134/242 (55%), Positives = 174/242 (71%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+IPAGVPRKPGMTRDDLFN NA IV TL A+ CP A++ +ISNPVNST+PI AE
Sbjct: 70 DVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAE 129
Query: 62 VFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVK 121
VFKK G Y+P ++ GVT LD+VRAN FVAE+ GLDP V VPV+GGHAG TI+PL+SQ
Sbjct: 130 VFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCT 189
Query: 122 PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVI 181
P ++ LT RIQ GTEVV+AK GAGSATLSMAYA A+F + + + G GV+
Sbjct: 190 PKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVV 249
Query: 182 ECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF 241
EC++V S T+ P+F++ + LG+ GIE+ +G ++ +E + +A EL SI+KG F
Sbjct: 250 ECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEF 309
Query: 242 VR 243
V+
Sbjct: 310 VK 311
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 150 bits (382), Expect = 3e-44
Identities = 58/247 (23%), Positives = 95/247 (38%), Gaps = 21/247 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAA 60
++ G PRK GMTR+DL NA I L + I CP V +I NP + T +
Sbjct: 78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTL 137
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-VPVVGGHAGVTILPL--- 116
P ++ + LD R + +A+ G+ V GGH G +
Sbjct: 138 ----IYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFAST 192
Query: 117 -------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
L+ + + LT + L R+ GG +++ + S+ S +Y + + A
Sbjct: 193 AKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RSSFQSPSYVSIEMIRA 250
Query: 170 CLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
+ G YV E A + + + G++ NE ERA L+++
Sbjct: 251 AMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEAERAALKESYS 308
Query: 230 ELAGSIQ 236
LA
Sbjct: 309 HLAKLRD 315
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 138 bits (350), Expect = 7e-40
Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 41/255 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV++ AG+ RKPGMTR+ L NA + L E I AIV + +NPV+
Sbjct: 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTY 124
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V K + +R++G +LD R ++++ LG+ + V+ V+G H G + P+
Sbjct: 125 VMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLS 183
Query: 121 KPSCS-----LTPTEIDYLTDRIQNGGTEVVEAKTGA-----GSATLSMAYAAAKFAD-- 168
++ EI+ + N G ++ E + + + + A + D
Sbjct: 184 SVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVEAIKR--DSK 241
Query: 169 ------ACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERA 222
L+G G + +P +G++GIE I L PL E E+
Sbjct: 242 RIYPYSLYLQGEYGYNDI----VAE-----VP-----AVIGKSGIERIIEL-PLTEDEKR 286
Query: 223 GLEKAKKELAGSIQK 237
++A + + ++
Sbjct: 287 KFDEAVQAVKKLVET 301
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 135 bits (343), Expect = 1e-38
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 27/248 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+ II AG+PR PGM+RDDL N IV + E + P + + +++NP++ +
Sbjct: 71 DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD----VMTY 126
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V + + R++G+ +LD R +F+AE L + R+V ++GGH G T++PL
Sbjct: 127 VAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 121 ----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 175
P L I+ + +R + G E+V+ SA + AAA+ +A L+ +
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAILKDNK 243
Query: 176 GDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
++ CA Y + F V+LG G+EE+ + L+ E+A L+ +
Sbjct: 244 ---RILPCAAYCDGEYGLDDL----FIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAG 295
Query: 230 ELAGSIQK 237
+ ++
Sbjct: 296 HVHSNLDD 303
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 135 bits (342), Expect = 1e-38
Identities = 81/248 (32%), Positives = 130/248 (52%), Gaps = 26/248 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIVII AG+PRKPGMTR+DL NAGIVK + + I K I+ ++SNP++ I
Sbjct: 71 DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD----IMTH 126
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V +R++G+ +LD R +F+A LG+ ++++ V+GGH G ++P++
Sbjct: 127 VAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYT 185
Query: 121 ----KPSCSLTPTE-IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 175
P L P E ID L +R +NGG E+VE GSA + A + + ++ + +
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPASSVVEMVESIVLDRK 244
Query: 176 GDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
V+ CA Y F V+LGR G+E+IY + L++ + L+K+ K
Sbjct: 245 R---VLPCAVGLEGQYGIDKT----FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAK 296
Query: 230 ELAGSIQK 237
+ + +
Sbjct: 297 IVDENCKM 304
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 134 bits (341), Expect = 2e-38
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 26/248 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ +G PRKPGM+R+DL +NA I + A P A++ +++NP++
Sbjct: 72 DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTY 127
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ +V + +R++G +LD R TF+A G+ +V ++GGH G ++PL
Sbjct: 128 LAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFS 186
Query: 121 ----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 175
P P + + +R + GG E+V GSA + A A A+ +A L+ +
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKK 245
Query: 176 GDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
V+ A Y + + +F V LG G+E+I L PLNE E A L + K
Sbjct: 246 ---RVMPVAAYLTGQYGLNDI----YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAK 297
Query: 230 ELAGSIQK 237
+ ++
Sbjct: 298 AVRATLDT 305
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 134 bits (341), Expect = 2e-38
Identities = 63/254 (24%), Positives = 110/254 (43%), Gaps = 38/254 (14%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII +GVPRK GM+R DL NA IV + IA+ C I +I+NPV+ +
Sbjct: 76 DVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTY 130
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
++ ++ G+ T LD +R +A+ G+ EV ++G H G +++PLLS
Sbjct: 131 KALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSAT 189
Query: 121 KPS-------CSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 173
ID + + ++ G +++ K G + A A +
Sbjct: 190 SIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEFGPAAAILNVVRCIVNN 246
Query: 174 ----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAG 223
+ G+ I + +P V++GR GIEE+ S+ L++ E
Sbjct: 247 EKRLLTLSAYVDGEFDGIRDVCIG-----VP-----VKIGRDGIEEVVSI-ELDKDEIIA 295
Query: 224 LEKAKKELAGSIQK 237
K+ + + ++
Sbjct: 296 FRKSAEIIKKYCEE 309
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 134 bits (340), Expect = 3e-38
Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 31/253 (12%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII A +P +P R +L NA I+ ++ EG+ K CP A V I+NP++ +
Sbjct: 74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVS 129
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
F+KV ++ G+ +LD R TF+A+ G++ +V V+GGH G ++P
Sbjct: 130 HFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSV 188
Query: 117 ------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
LS +T +ID + + EV + G+A + A AA K A+A
Sbjct: 189 SVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAAAAVKMAEAY 247
Query: 171 LRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
L+ + V+ C+ Y + + +G+ G+E+I L L E+ L
Sbjct: 248 LKDKK---AVVPCSAFCSNHYGVKGI----YMGVPTIIGKNGVEDILEL-DLTPLEQKLL 299
Query: 225 EKAKKELAGSIQK 237
++ E+ +
Sbjct: 300 GESINEVNTISKV 312
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 134 bits (339), Expect = 3e-38
Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 26/246 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+PR+PG TR DL NA I++ + + + I SNPV+ +
Sbjct: 72 DVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNR 127
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ G ++++G LD R ++E + V+ ++G H G +P+ S+V
Sbjct: 128 HLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKV 186
Query: 121 KPSC---SLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGD 177
+ E + L +Q +V+E K G+ A A +A L
Sbjct: 187 SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHDTGE- 242
Query: 178 AGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKEL 231
V+ + + F V LG G+EEI L++YE+ + A ++L
Sbjct: 243 --VLPASVKLEGEFGHEDT----AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKL 295
Query: 232 AGSIQK 237
+ K
Sbjct: 296 SDQYDK 301
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 134 bits (340), Expect = 3e-38
Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 26/248 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG+ RKPGM+RDDL N+ I+K++ IAK P AI+ +++NPV+
Sbjct: 80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD----AMTY 135
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K + +R++G +LD R TF+A+ L L +++ V+GGH G ++PL+
Sbjct: 136 SVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 121 ----KPSCSL-TPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLR 175
P +L ++ + +R + GG E+V G GSA + A + + +A L+ R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 176 GDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
V+ Y S + + V LG GIE+I L L E+ L+++ +
Sbjct: 254 ---RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVE 305
Query: 230 ELAGSIQK 237
+ ++
Sbjct: 306 SVRNVMKV 313
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 134 bits (341), Expect = 3e-38
Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 31/253 (12%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VII AGVPRKP MTR DL +NA IV ++ E + K CP A V I+NP++
Sbjct: 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVY 139
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
FK+ ++ G+ +LD R ++ LG+ P +V VVGGH G ++PL
Sbjct: 140 YFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSV 198
Query: 117 ------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
LS +T ++I+ + + GG E+VE GSA + A +A A A
Sbjct: 199 TIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAASAVAMAQAY 257
Query: 171 LRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
L+ + V+ C+ Y + + F V +G+ GIE++ + L++ E++
Sbjct: 258 LKDSK---SVLVCSTYLTGQYNVNNL----FVGVPVVIGKNGIEDVVIV-NLSDDEKSLF 309
Query: 225 EKAKKELAGSIQK 237
K+ + + +Q
Sbjct: 310 SKSVESIQNLVQD 322
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 132 bits (335), Expect = 2e-37
Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 31/253 (12%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVPRKPGM+RDDL IN +++ + GI K P+A V I+NP++
Sbjct: 77 DVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD----AMVW 132
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
+K +++G+ +LD R F++E + +V V V+GGH G +++PL
Sbjct: 133 ALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYS 191
Query: 117 ------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
L + + ++D + R ++GG E+V GSA + A +A + A++
Sbjct: 192 TVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPAASAIQMAESY 250
Query: 171 LRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
L+ + V+ A Y + + +G G+E I + L++ E+A
Sbjct: 251 LKDKK---RVLPVAAQLSGQYGVKDM----YVGVPTVIGANGVERIIEI-DLDKDEKAQF 302
Query: 225 EKAKKELAGSIQK 237
+K+ +AG +
Sbjct: 303 DKSVASVAGLCEA 315
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 131 bits (333), Expect = 4e-37
Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 40/258 (15%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVPRKPGM+RDDL IN +++T+ EGI CP A V I+NP++ I
Sbjct: 75 DVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD----IMVN 130
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL---- 116
+ +K +++G+ +LD R TF+A+ L + ++V V+GGH G T++PL
Sbjct: 131 MLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMS 189
Query: 117 ------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
L Q+ L +D + R ++GG E+V GSA + A A + A++
Sbjct: 190 NVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPAAAGIQMAESF 248
Query: 171 LRGLR-----------GDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
L+ + G G+ E +V +P + G+ I +++
Sbjct: 249 LKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANGVRPIEV--EISDK 296
Query: 220 ERAGLEKAKKELAGSIQK 237
ER L+ + + +
Sbjct: 297 EREQLQVSINAIKDLNKA 314
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 129 bits (327), Expect = 3e-36
Identities = 64/258 (24%), Positives = 120/258 (46%), Gaps = 38/258 (14%)
Query: 2 DIVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D+VI+ AG + PG + RDDL +N I+ + I K CP A + +++NPV+
Sbjct: 74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD--- 130
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
+ ++ + +++G+ +LD R ++++ L + PR+V+ +VG H G ++
Sbjct: 131 -VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVL 188
Query: 116 L----------LSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
L L + + ++ E++ + DR N E+V S ++ A A +
Sbjct: 189 LKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH---ASPYVAPAAAIIE 245
Query: 166 FADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
A++ L+ L+ V+ C+ Y S + F + V LG G+E++ L LN
Sbjct: 246 MAESYLKDLK---KVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQVIEL-QLNSE 297
Query: 220 ERAGLEKAKKELAGSIQK 237
E+A ++A E
Sbjct: 298 EKAKFDEAIAETKRMKAL 315
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 128 bits (325), Expect = 4e-36
Identities = 51/261 (19%), Positives = 103/261 (39%), Gaps = 42/261 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I +++ E + + + + +NPV+ I
Sbjct: 76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVT 112
K +R++G T+LD R + E + P+ V ++G H +
Sbjct: 132 ATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAY 191
Query: 113 I--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
I +P+ V+ +++ + +++ +++E K G+ +A A+ A
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYGIAMGLARVTRAI 248
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
L ++ S + +P + R GI E+ + LN+
Sbjct: 249 LHNEN---AILTV----SAYLDGLYGERDVYIGVP-----AVINRNGIREVIEI-ELNDD 295
Query: 220 ERAGLEKAKKELAGSIQKGVS 240
E+ + L + + +
Sbjct: 296 EKNRFHHSAATLKSVLARAFT 316
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 128 bits (324), Expect = 8e-36
Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 42/261 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P+KPG TR DL N N I+K++ + I I + +NPV+ I
Sbjct: 78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVT 112
K+ + R++G T LD R +AE++ +D R V ++G H +
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHAN 193
Query: 113 I--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
I + + VK + ++ + + +++ E+++ K G+ +A A A+ + A
Sbjct: 194 IGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKAI 250
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
L V+ S + P + R GI+ I + PL ++
Sbjct: 251 LNDEN---AVLPL----SVYMDGQYGLNDIYIGTP-----AVINRNGIQNILEI-PLTDH 297
Query: 220 ERAGLEKAKKELAGSIQKGVS 240
E ++K+ +L + +
Sbjct: 298 EEESMQKSASQLKKVLTDAFA 318
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 127 bits (323), Expect = 9e-36
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 43/261 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG P+KPG +R DL N N I+ ++ + + I + +NPV+ I
Sbjct: 74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTY 129
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K + +R++G T LD R + + +DPR VD ++G H G + S
Sbjct: 130 ATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTA 188
Query: 121 K----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
++ ++ L D ++N +++ K G+ + A + + A
Sbjct: 189 TIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFYGIGTALMRISKAI 245
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
LR V+ + P +G G+++I PL+
Sbjct: 246 LRDEN---AVLPV----GAYMDGQYGLNDIYIGTP-----AIIGGTGLKQIIES-PLSAD 292
Query: 220 ERAGLEKAKKELAGSIQKGVS 240
E ++ + L + G++
Sbjct: 293 ELKKMQDSAATLKKVLNDGLA 313
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 128 bits (323), Expect = 1e-35
Identities = 59/261 (22%), Positives = 101/261 (38%), Gaps = 42/261 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
DIV I AG +KPG TR +L N I K + + I + +NPV+ I
Sbjct: 75 DIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTY 130
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVT 112
K +R++G T LD R ++E G P+ V ++G H +
Sbjct: 131 ATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWSHAN 190
Query: 113 I--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
+ +P+ V+ + + E+D + D ++N ++E K G+ +A + A+ A
Sbjct: 191 VGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYGVAMSLARITKAI 247
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
L ++ ST + +P + R GI I L LNE
Sbjct: 248 LHNEN---SILTV----STYLDGQYGADDVYIGVP-----AVVNRGGIAGITEL-NLNEK 294
Query: 220 ERAGLEKAKKELAGSIQKGVS 240
E+ + L ++ +
Sbjct: 295 EKEQFLHSAGVLKNILKPHFA 315
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 127 bits (322), Expect = 1e-35
Identities = 71/258 (27%), Positives = 116/258 (44%), Gaps = 42/258 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+VI+ AGVP+KPG TR L NA ++K + ++K P +IV +++NPV+ +
Sbjct: 69 DVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTY 124
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH--------AGVT 112
F K DP+++ G T+LD R T +A+ G PR V V V+G H +G
Sbjct: 125 FFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAM 184
Query: 113 I--LPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
I +PL + + ++ ++ + E++E K G+ ++A A A ++
Sbjct: 185 IGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHYAIALAVADIVESI 241
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
+ V+ S E +P V LG+ G+E I L LNE
Sbjct: 242 FFDEK---RVLTL----SVYLEDYLGVKDLCISVP-----VTLGKHGVERILEL-NLNEE 288
Query: 220 ERAGLEKAKKELAGSIQK 237
E K+ L +I +
Sbjct: 289 ELEAFRKSASILKNAINE 306
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 127 bits (322), Expect = 2e-35
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 36/258 (13%)
Query: 2 DIVIIPAGVPRKPGM-----TRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTV 56
D VI+ AG+ + PG +R+DL N+ I++ + + I K CPK + +++NP++
Sbjct: 80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD--- 136
Query: 57 PIAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILP 115
+V + + G+ MLD R +VA+ L + PR+V V+G H G ++P
Sbjct: 137 -CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVP 194
Query: 116 LLSQVK----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAK 165
L+ + +T +++ + + + G E+V G GSA + A +A
Sbjct: 195 LVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVA 253
Query: 166 FADACLRGLRGDAGVIECA------YVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEY 219
A + L + VI C+ Y + F +G AGIE + L LNE
Sbjct: 254 MATSFLNDEK---RVIPCSVYCNGEYGLKDM----FIGLPAVIGGAGIERVIEL-ELNEE 305
Query: 220 ERAGLEKAKKELAGSIQK 237
E+ +K+ ++ +
Sbjct: 306 EKKQFQKSVDDVMALNKA 323
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 126 bits (319), Expect = 4e-35
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 43/258 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG TR DL + N I K++ + I + +NPV+ I A
Sbjct: 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K +R++G T+LD R ++E + PR VD ++G H G T LP+ S
Sbjct: 132 ATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHA 190
Query: 121 K----------PSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADAC 170
+I+ + + ++ ++++AK G+ +A A+ +A
Sbjct: 191 NIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGVAMGLARITEAI 247
Query: 171 LRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLNEY 219
R V+ S + E +P + R GI + + PLN+
Sbjct: 248 FRNED---AVLTV----SALLEGEYEEEDVYIGVP-----AVINRNGIRNVVEI-PLNDE 294
Query: 220 ERAGLEKAKKELAGSIQK 237
E++ + K L + +
Sbjct: 295 EQSKFAHSAKTLKDIMAE 312
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 126 bits (318), Expect = 6e-35
Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 43/263 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
+VII AG ++ G +R +L N I K + + K P+ + ++SNPV+ I
Sbjct: 89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTY 144
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V K+ + R++G LD R + E LG+ P V+G H G + +P+ S V
Sbjct: 145 VAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGV 203
Query: 121 ------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 168
+ + + ++ + EV++ K G + ++ + A A+
Sbjct: 204 NVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAE 260
Query: 169 ACLRG----------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 218
+ ++ ++G G+ E +++ +P LG+ GI ++ + L
Sbjct: 261 SIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILGQNGISDVVKV-TLTP 309
Query: 219 YERAGLEKAKKELAGSIQKGVSF 241
E A L+K+ L G IQK + F
Sbjct: 310 DEEARLKKSADTLWG-IQKELQF 331
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 124 bits (315), Expect = 1e-34
Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 45/260 (17%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
V++ AGV ++PG TR L + NA + + + + P+A++ + +NPV+ + +
Sbjct: 69 RAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQ 124
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V + P R++G T+LD R +AE L + P+ V V+G H G + + + S
Sbjct: 125 VAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSA 183
Query: 121 ------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFAD 168
+L+P + + + ++ ++E K G+ + A+
Sbjct: 184 QVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLARLVR 240
Query: 169 ACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPLN 217
A L + GV S T LP LG G+ L+
Sbjct: 241 AILTDEK---GVYTV----SAFTPEVAGVLEVSLSLP-----RILGAGGVAGTVYP-SLS 287
Query: 218 EYERAGLEKAKKELAGSIQK 237
ERA L ++ + L +
Sbjct: 288 PEERAALRRSAEILKEAAFA 307
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 124 bits (314), Expect = 2e-34
Identities = 54/261 (20%), Positives = 106/261 (40%), Gaps = 46/261 (17%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D+V+I AG +KPG +R +L I+K + + K P AI LI+NPV+ IA
Sbjct: 77 DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V +K+ ++ G T LD R +A+ G++ + V + G H G + +PL
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESA 191
Query: 121 -------------KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 167
L + + + ++N +++ K G+ ++ +
Sbjct: 192 TIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---GATNYAIGMSGVDII 248
Query: 168 DACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPL 216
+A L ++ S++ + +P L R G+ + P+
Sbjct: 249 EAVLHDTN---RILPV----SSMLKDFHGISDICMSVP-----TLLNRQGVNNTINT-PV 295
Query: 217 NEYERAGLEKAKKELAGSIQK 237
++ E A L+++ + L + +
Sbjct: 296 SDKELAALKRSAETLKETAAQ 316
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 123 bits (312), Expect = 3e-34
Identities = 52/261 (19%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
D++++ AG RKPG TR DL N I K + + I K ++ ++SNPV+ I
Sbjct: 76 DVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITY 131
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH------------ 108
+ +K +++G T+LD +R ++E LG+D + V ++G H
Sbjct: 132 MIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTH 191
Query: 109 -AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFA 167
AG I + K + + + + + ++ G +++ K G+ +A +
Sbjct: 192 IAGKNINEYIDDPKCNFT--EEDKKKIAEDVKTAGATIIKNK---GATYYGIAVSINTIV 246
Query: 168 DACLRGLRGDAGVIECAYVASTVTE-----------LPFFASKVRLGRAGIEEIYSLGPL 216
+ L+ + TV LP + G++E+ L
Sbjct: 247 ETLLKNQN---TIRTV----GTVINGMYGIEDVAISLP-----SIVNSEGVQEVLQF-NL 293
Query: 217 NEYERAGLEKAKKELAGSIQK 237
E L + +++ + +
Sbjct: 294 TPEEEEALRFSAEQVKKVLNE 314
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 119 bits (301), Expect = 2e-32
Identities = 53/247 (21%), Positives = 94/247 (38%), Gaps = 25/247 (10%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAA 60
D+ I+ +PR+ GM R DL N I K + K K++ V ++ NP N+ A+
Sbjct: 81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTAS 140
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K + + +T LD RA +A LG+ +V ++ G+ T P ++
Sbjct: 141 ---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHA 197
Query: 121 ----KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
+ + +Q G V++A+ SA +S A A
Sbjct: 198 KVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR-KLSSA-MSAAKAICDHVRD 255
Query: 170 CLRGLRGDAGVIECAYVAST-----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 224
G G + S V + ++ V + + + L P+N++ R +
Sbjct: 256 IWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKM 312
Query: 225 EKAKKEL 231
+ KEL
Sbjct: 313 DLTAKEL 319
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 118 bits (298), Expect = 3e-32
Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 35/252 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
+VI+ AG +KPG +R DL NA I + L I + P A++ + SNPV+ + +
Sbjct: 69 QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTD 124
Query: 62 VFKKVGTYDPK-RLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGH----------- 108
+ ++ P ++G T+LD R +A+ G+D V+G H
Sbjct: 125 LATQL---APGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSA 181
Query: 109 --AGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKF 166
AG+ + + + + +N ++E K + + A A+
Sbjct: 182 MVAGMPVADFMQAQNL--PWNEQVRAKIDEGTRNAAASIIEGK---RATYYGIGAALARI 236
Query: 167 ADACLRGLRGDAGVIECAYVASTVTELPFFASK-VRLGRAGIEEIYSLGPLNEYERAGLE 225
+A LR R V++ E S +GR G+ L E+ LE
Sbjct: 237 TEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLE 289
Query: 226 KAKKELAGSIQK 237
++ L G Q+
Sbjct: 290 QSAGVLRGFKQQ 301
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 116 bits (293), Expect = 1e-31
Identities = 50/249 (20%), Positives = 101/249 (40%), Gaps = 41/249 (16%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
+I+++ AG+ RKPGMTR DL + NAGI+K + + I + P++ + +++NP++ +
Sbjct: 71 EIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTY 126
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
+ K + G+ LD R + + ++G H G ++ S
Sbjct: 127 IMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLA 183
Query: 121 ----KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRG 176
+ + + + + ++ EV++ K G+ A A + A +
Sbjct: 184 DFDGEV-------DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMVKAVVEDTG- 232
Query: 177 DAGVIECA------YVASTVTELPFFASKVRLGRAGIE--EIYSLGPLNEYERAGLEKAK 228
+I + Y V +LG+ G E +I L++ E L +
Sbjct: 233 --EIIPTSMILQGEYGIENV----AVGVPAKLGKNGAEVADI----KLSDEEIEKLRNSA 282
Query: 229 KELAGSIQK 237
K L +++
Sbjct: 283 KILRERLEE 291
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 116 bits (292), Expect = 3e-31
Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 19/241 (7%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAA 60
D ++ PRK GM R DL +N I +A+ K + V ++ NP N+ IA
Sbjct: 82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAY 141
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K +P+ +T LD RA +A+ G + V G+ T+ P L
Sbjct: 142 ---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHA 198
Query: 121 ----KPSCSLTPTE--IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGL 174
+P+ L E + G +++A+ GA SA S A AA + G
Sbjct: 199 EVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA-ASAANAAIEHIRDWALG- 255
Query: 175 RGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKE 230
G V S + E ++ V + G + +NE+ R +E +E
Sbjct: 256 -TPEGDWVSMAVPSQGEYGIPEGIVYSFPVT-AKDGAYRVVEGLEINEFARKRMEITAQE 313
Query: 231 L 231
L
Sbjct: 314 L 314
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 114 bits (289), Expect = 7e-31
Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 38/248 (15%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
+VI + D+ N + + L + +++ + S P V I
Sbjct: 79 KVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP----VEIMTY 133
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
V K+ T+ R++G+ LD R + VL +V V+G G + S
Sbjct: 134 VTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQ 192
Query: 121 KPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG------- 173
++ N E++ K G + S+ + A D+ +
Sbjct: 193 ------EEVVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIVNNKKKVHSV 243
Query: 174 ---LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE-RAGLEKAKK 229
+G + +++ LP LG G+ E+ L E L+ +
Sbjct: 244 SALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDTVTEKLQSSAS 292
Query: 230 ELAGSIQK 237
+ Q+
Sbjct: 293 SIHSLQQQ 300
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 113 bits (286), Expect = 2e-30
Identities = 54/257 (21%), Positives = 102/257 (39%), Gaps = 44/257 (17%)
Query: 2 DIVIIPAGVPR----KPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVP 57
D+VI G + P R + +V+++ + + ++ +ISNPV+
Sbjct: 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD---- 126
Query: 58 IAAEVFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPL 116
+ +F+ V + +++G T+LD R V E LDPR V +G H G +
Sbjct: 127 VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVA 185
Query: 117 LSQV----KPSCSLTPT---EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADA 169
S V +P +L ++ + + + GG V+ K G + +A +A + A A
Sbjct: 186 WSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSYGVATSAIRIAKA 242
Query: 170 CLR---------GLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE 220
+ R D G+ Y++ P +GR G+ +L L E
Sbjct: 243 VMADAHAELVVSNRRDDMGM----YLS-----YP-----AIIGRDGVLAETTL-DLTTDE 287
Query: 221 RAGLEKAKKELAGSIQK 237
+ L +++ + +
Sbjct: 288 QEKLLQSRDYIQQRFDE 304
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 114 bits (288), Expect = 2e-30
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 20/243 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI-VNLISNPVNSTVPIAA 60
D ++ PR PGM R L +IN I + + K + V ++ NP N+ I
Sbjct: 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICL 169
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K K +T LD RA +A G+ +V + G+ T +P
Sbjct: 170 ---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNA 226
Query: 121 KPSCSLTPTEI-------DYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 173
K I + T +Q G +++ G SA S A + A + +
Sbjct: 227 KIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRSSA-ASTAVSIADAIKSLVTP 284
Query: 174 LRGDAGVIECAYVAST-----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAK 228
G V +T + E F+ R G E+ + +++ ++K++
Sbjct: 285 --TPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSE 342
Query: 229 KEL 231
EL
Sbjct: 343 AEL 345
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 113 bits (285), Expect = 3e-30
Identities = 50/242 (20%), Positives = 83/242 (34%), Gaps = 21/242 (8%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPK-AIVNLISNPVNSTVPIAA 60
D+ ++ PR PGM R DL NA I + I + V ++ NP N+ IA
Sbjct: 85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM 144
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K + K + LD RA + +A G ++ V G+ T+
Sbjct: 145 ---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYA 201
Query: 121 ----KPSCSLTPTE---IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG 173
+ + D + G +++A+ G SA A AA D
Sbjct: 202 QIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-GVSSA----ASAANAAIDHIHDW 256
Query: 174 LRGDAGVIECAYVAST----VTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKK 229
+ G AG + S + E F V + + L ++ + + +
Sbjct: 257 VLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLN 315
Query: 230 EL 231
EL
Sbjct: 316 EL 317
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 112 bits (282), Expect = 1e-29
Identities = 50/257 (19%), Positives = 86/257 (33%), Gaps = 34/257 (13%)
Query: 2 DIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAE 61
+V+I AG ++ G +R +L N I K + I K P + L +
Sbjct: 91 KLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT----DKNK 146
Query: 62 VFKKVGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K+ R++G LD R + E LG+ V V+G H G ++ + S +
Sbjct: 147 QDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSGM 205
Query: 121 KPSCSLTPT-----EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG-- 173
+ E+ L VV + + A A ++
Sbjct: 206 WDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLC 265
Query: 174 --------LRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLG-PLNEYERAGL 224
++ G+ + +++ LP L GI + L E L
Sbjct: 266 RVHPVSTMVKDFYGIKDNVFLS-----LP-----CVLNN-GISHCNIVKMKLKPDEEQQL 314
Query: 225 EKAKKELAGSIQKGVSF 241
+K+ L IQK + F
Sbjct: 315 QKSATTLW-DIQKDLKF 330
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-07
Identities = 59/288 (20%), Positives = 94/288 (32%), Gaps = 112/288 (38%)
Query: 20 DLFNINAGIVKTLCEGIA--------------KCCPKA--IVNLISNPVNSTVP-----I 58
DL+ +V L + A K + I+ + NP S P +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP--SNTPDKDYLL 232
Query: 59 AAEV-FKKVGTYDPKRLLGVTMLDVVRANTFV-AEVLGLDPREVDVPVVG--GH-AGV-- 111
+ + P L+GV L A+ V A++LG P E+ + G GH G+
Sbjct: 233 SIPISC-------P--LIGVIQL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 112 ------------------TILPLL-------SQVKPSCSLTPTEIDYLTDRIQNGGTEVV 146
+ +L + P+ SL P+ L D ++N
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI---LEDSLEN------ 330
Query: 147 EAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRL---- 202
G + M + L + ++ YV T + LP +V +
Sbjct: 331 ----NEGVPS-PM---------LSISNLTQEQ--VQ-DYVNKTNSHLP-AGKQVEISLVN 372
Query: 203 GR-----AGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSF-VRK 244
G +G + SL LN L KAK +G Q + F RK
Sbjct: 373 GAKNLVVSGPPQ--SLYGLNLT----LRKAKAP-SGLDQSRIPFSERK 413
Score = 49.7 bits (118), Expect = 4e-07
Identities = 42/245 (17%), Positives = 74/245 (30%), Gaps = 81/245 (33%)
Query: 55 TVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVL-----GLDPRE------VDVP 103
T A +V+ + + K G ++LD+V N + G RE +
Sbjct: 1638 TSKAAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 104 VVGGHAGVTILPLLSQVKPSCSLT-PTEIDYLTDRIQNGGT------------EVVEAKT 150
V G I +++ S + + T Q T E +++K
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT---QF--TQPALTLMEKAAFEDLKSKG 1751
Query: 151 G-------AG------SATLSMAYAAA-KFADAC----LRGL------------RGDAGV 180
AG +A L+ + A RG+ R + G+
Sbjct: 1752 LIPADATFAGHSLGEYAA-LA-SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 181 IEC--AYVASTVTE--LPFFASKVRLGRAGIEEI--YSLGPLNE----Y----ERAGLEK 226
I VA++ ++ L + +V + EI Y N Y + L+
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----NVENQQYVAAGDLRALDT 1864
Query: 227 AKKEL 231
L
Sbjct: 1865 VTNVL 1869
Score = 39.6 bits (92), Expect = 7e-04
Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 102/227 (44%)
Query: 13 KPGMTRDDLFNINAGIVKTLCEGIAKCCPKA----IVNLI-SNPVNSTV----------- 56
+ GM D L+ + + + I++++ +NPVN T+
Sbjct: 1628 EQGMGMD-LYK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 57 ---------------PIAAEVFKKVG------TY-DPKRLLGVTMLDVVRANT----FVA 90
++FK++ T+ K LL T T +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT------QFTQPALTLM 1739
Query: 91 EVL--------GLDPREVDVPVVGGH-----------AGV----TILPLLSQ-------- 119
E GL P + GH A V +++ ++
Sbjct: 1740 EKAAFEDLKSKGLIPADA---TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 120 ---------------VKPS---CSLTPTEIDYLTDRIQNGGTEVVEA 148
+ P S + + Y+ +R+ +VE
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Score = 35.4 bits (81), Expect = 0.015
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 50/141 (35%)
Query: 122 PSCSLTPTE-----IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRG--- 173
P+ TP E + Y++ ++ +K G L++ F + L G
Sbjct: 54 PT---TPAELVGKFLGYVSSLVE-------PSKVGQFDQVLNLCLTE--FENCYLEGNDI 101
Query: 174 ------LRGDAG--------VIECAYVASTVTELPFF-ASKVRLGRA---GIEEIYSL-- 213
L + +I+ A + + PF S L RA G ++ ++
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 214 --GPLNEYERAGLEKAKKELA 232
G ++Y E EL
Sbjct: 162 GQGNTDDY----FE----ELR 174
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 35.8 bits (82), Expect = 0.008
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 10/110 (9%)
Query: 9 GVPRKPGMTRDDLFNINAG----------IVKTLCEGIAKCCPKAIVNLISNPVNSTVPI 58
+P + G+ + + G I + I P++ V +NP++ +
Sbjct: 96 HLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRV 155
Query: 59 AAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGH 108
+VF + + T + T + ++ V V+G +
Sbjct: 156 LYKVFPGIKAIGCCHEVFGTQKLLAEMVTERLGIEVPRREDIRVNVLGIN 205
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 36.0 bits (82), Expect = 0.008
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)
Query: 32 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 91
+ I K PKA +NP+ V P + +G + E
Sbjct: 135 IARKIEKLSPKAWYLQAANPI-FEGTTL------VTRTVPIKAVGFC--HGHYGVMEIVE 185
Query: 92 VLGLDPREVDVPVVG 106
LGL+ +VD V G
Sbjct: 186 KLGLEEEKVDWQVAG 200
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 32.4 bits (73), Expect = 0.12
Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 30/141 (21%)
Query: 1 MDIVIIPAGVPRKPGMTRDDLFNINAGI--------------------VKTLCEGIAKCC 40
+D V+ V + D+ + G+ V + + + K
Sbjct: 103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS 162
Query: 41 PKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREV 100
P A + SNP + ++L + + V +A++LGL R+
Sbjct: 163 PDAWMLNYSNPAAIVAEATRRLRPNS------KILNICDM-PVGIEDRMAQILGLSSRKE 215
Query: 101 DVPVVGGHAGVTILPLLSQVK 121
+ + G+ + ++
Sbjct: 216 ---MKVRYYGLNHFGWWTSIQ 233
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 31.7 bits (71), Expect = 0.18
Identities = 24/144 (16%), Positives = 51/144 (35%), Gaps = 18/144 (12%)
Query: 9 GVPRKPGMTRDDLFNI--------NAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAA 60
+P K G+ + ++ + + + CP A + +NP
Sbjct: 104 RIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVL 163
Query: 61 EVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQV 120
K+ +++G+ + + VA++LG+D V + G + V L +
Sbjct: 164 RYTKQE------KVVGLCNV-PIGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDG 216
Query: 121 KPSCSLTPTEIDYLTDRIQNGGTE 144
+T ID + ++G T
Sbjct: 217 V---EVTEKVIDLVAHPDRSGVTM 237
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 31.0 bits (69), Expect = 0.34
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 32 LCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAE 91
+ E + K PKA + +NPV E+ + V + ++G V V E
Sbjct: 154 IAEKMKKMAPKAYLMQTANPV-------FEITQAVRRWTGANIVG--FCHGVAGVYEVFE 204
Query: 92 VLGLDPREVDVPVVG 106
L LDP EVD V G
Sbjct: 205 KLDLDPEEVDWQVAG 219
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 29.0 bits (65), Expect = 0.64
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 126 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 158
T EI L+ R+Q G T +E ++GA +AT+S
Sbjct: 54 CTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATIS 93
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase
family 92, BT2199; HET: SWA; 1.90A {Bacteroides
thetaiotaomicron} PDB: 2wvy_A*
Length = 737
Score = 29.9 bits (68), Expect = 0.88
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 162 AAAKFADACLRGLRG-DAGVIECAYVA--STVTELPFFASKVRLGRAGIEEIYSLG--PL 216
+ + DA ++G++ D E A A + V GR G E LG P
Sbjct: 384 SVSLLVDAWMKGIQTVD---AEKALEAMIHQTQARHAEIASV--GRDGFEYYDKLGYVPY 438
Query: 217 NEYERA---GLEKA 227
E A LE A
Sbjct: 439 PEVPEATAKTLEYA 452
>3frw_A Putative Trp repressor protein; structural genomics, APC21159,
PSI-2, P structure initiative; 2.05A {Ruminococcus obeum
atcc 29174} PDB: 3g1c_A
Length = 107
Score = 28.2 bits (63), Expect = 0.92
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 126 LTPTEIDYLTDRIQ------NGGT-EVVEAKTGAGSATLS 158
T E+ L+ R + + T + KTGA +AT+S
Sbjct: 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATIS 76
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Length = 99
Score = 26.9 bits (60), Expect = 2.5
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 71 PKRLLGVTMLDVVRANTFVAEVLGLDPREVD 101
++ + V++ +AE L + E+
Sbjct: 14 VNQVNLSEIKQVLKQQ--LAEALYTEESEIA 42
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase
family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A
{Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A*
2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Length = 744
Score = 28.4 bits (64), Expect = 2.8
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 162 AAAKFADACLRGLRG-DAGVIECAYVA--STVTELPFFASKVRLGRAGIEEIYSLG 214
+A+ DA ++G++ D I+ Y + S GR G E LG
Sbjct: 380 SASILVDAYMKGVKVDD---IKTLYEGLIHGTENVHPEVSST--GRLGYEYYNKLG 430
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 27.9 bits (62), Expect = 3.4
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 44 IVNLISNPVNSTVPIAAEVFKKVGTYDPKRL 74
I+NL N + VGT+ L
Sbjct: 454 IMNLQYTEANRYD------YVHVGTWHEGVL 478
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 26.9 bits (59), Expect = 5.9
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 126 LTPTEIDYLTDRIQ-NGGTEVVEAKTGAGSATLSMAYAAAKF 166
+ P + Y+ ++ N V+E TG+G+ ++ A +
Sbjct: 75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEV 116
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 26.4 bits (58), Expect = 8.8
Identities = 4/22 (18%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 80 LDVVRANTFVAEVLGLDPREVD 101
+R + +A +L +P ++
Sbjct: 28 AQFLRQS--LAAMLYCEPGQIR 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.393
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,861,806
Number of extensions: 245702
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 73
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)