Query 026054
Match_columns 244
No_of_seqs 255 out of 1256
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026054hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05496 Bromo_WDR9_II Bromodom 100.0 1.2E-30 2.7E-35 204.9 11.6 111 103-215 5-116 (119)
2 cd05495 Bromo_cbp_like Bromodo 100.0 6.3E-30 1.4E-34 198.0 12.7 105 102-206 2-107 (108)
3 KOG1474 Transcription initiati 100.0 1.6E-30 3.5E-35 254.5 11.3 117 97-213 216-332 (640)
4 cd05497 Bromo_Brdt_I_like Brom 100.0 9.4E-30 2E-34 196.6 12.1 102 103-204 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 100.0 1.3E-29 2.8E-34 192.5 10.9 95 105-201 2-96 (97)
6 cd05503 Bromo_BAZ2A_B_like Bro 100.0 6.3E-29 1.4E-33 188.8 10.8 96 105-202 2-97 (97)
7 cd05504 Bromo_Acf1_like Bromod 100.0 1.4E-28 3E-33 192.5 11.8 101 103-205 12-112 (115)
8 cd05507 Bromo_brd8_like Bromod 100.0 1.9E-28 4.2E-33 188.5 12.2 101 103-205 3-103 (104)
9 cd05502 Bromo_tif1_like Bromod 100.0 2.8E-28 6.1E-33 189.0 13.1 103 103-208 4-109 (109)
10 cd05506 Bromo_plant1 Bromodoma 100.0 1.7E-28 3.7E-33 186.9 10.8 99 104-202 1-99 (99)
11 cd05508 Bromo_RACK7 Bromodomai 100.0 2.7E-28 5.8E-33 185.9 11.0 97 102-201 2-98 (99)
12 cd05509 Bromo_gcn5_like Bromod 100.0 3.7E-28 8.1E-33 185.7 11.7 100 104-205 2-101 (101)
13 cd05501 Bromo_SP100C_like Brom 100.0 6.7E-28 1.4E-32 184.1 12.2 98 105-207 4-101 (102)
14 cd05510 Bromo_SPT7_like Bromod 100.0 6.7E-28 1.4E-32 187.6 12.1 101 103-205 7-109 (112)
15 cd05498 Bromo_Brdt_II_like Bro 100.0 9.4E-28 2E-32 183.8 11.2 98 105-202 2-102 (102)
16 cd05500 Bromo_BDF1_2_I Bromodo 100.0 1.3E-27 2.8E-32 183.5 11.9 99 103-201 4-102 (103)
17 cd05499 Bromo_BDF1_2_II Bromod 99.9 1E-27 2.3E-32 183.7 11.0 98 105-202 2-102 (102)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 9.2E-28 2E-32 185.6 10.7 99 104-204 2-106 (107)
19 cd05528 Bromo_AAA Bromodomain; 99.9 1.7E-27 3.8E-32 185.4 12.0 105 103-209 3-111 (112)
20 cd05513 Bromo_brd7_like Bromod 99.9 4.8E-27 1E-31 178.7 10.8 93 104-198 2-94 (98)
21 cd05511 Bromo_TFIID Bromodomai 99.9 6.1E-27 1.3E-31 182.4 10.8 103 107-211 4-106 (112)
22 cd05512 Bromo_brd1_like Bromod 99.9 1.3E-26 2.9E-31 176.4 10.8 90 106-197 4-93 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 2.5E-26 5.5E-31 176.3 10.2 96 105-202 2-103 (103)
24 cd05524 Bromo_polybromo_I Brom 99.9 3.4E-26 7.3E-31 178.4 10.8 102 104-207 3-110 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 4E-26 8.8E-31 175.8 10.1 96 106-203 3-104 (105)
26 cd05525 Bromo_ASH1 Bromodomain 99.9 8.6E-26 1.9E-30 174.2 11.1 96 104-201 3-104 (106)
27 cd05520 Bromo_polybromo_III Br 99.9 1.1E-25 2.5E-30 172.7 10.1 81 119-201 22-102 (103)
28 smart00297 BROMO bromo domain. 99.9 3.5E-25 7.5E-30 170.0 12.2 101 102-204 6-106 (107)
29 cd05518 Bromo_polybromo_IV Bro 99.9 2.5E-25 5.3E-30 170.8 10.3 99 100-201 4-102 (103)
30 cd05517 Bromo_polybromo_II Bro 99.9 2E-25 4.3E-30 171.4 9.7 94 106-201 3-102 (103)
31 cd05529 Bromo_WDR9_I_like Brom 99.9 6E-25 1.3E-29 175.0 12.6 99 103-203 24-126 (128)
32 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 8.1E-24 1.8E-28 163.2 10.9 96 104-203 2-103 (106)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.9 1.2E-23 2.7E-28 161.7 11.2 82 118-201 22-103 (104)
34 PF00439 Bromodomain: Bromodom 99.9 1.1E-23 2.4E-28 154.8 9.6 84 108-193 1-84 (84)
35 cd04369 Bromodomain Bromodomai 99.9 2.4E-23 5.2E-28 155.7 9.8 95 106-202 3-99 (99)
36 cd05492 Bromo_ZMYND11 Bromodom 99.9 1.6E-22 3.5E-27 156.3 11.8 98 108-205 5-106 (109)
37 cd05526 Bromo_polybromo_VI Bro 99.8 5.5E-20 1.2E-24 142.1 10.6 98 105-206 5-108 (110)
38 KOG1245 Chromatin remodeling c 99.8 1.5E-19 3.2E-24 188.0 8.1 98 108-208 1306-1403(1404)
39 COG5076 Transcription factor i 99.8 7E-19 1.5E-23 162.9 9.8 92 119-212 164-255 (371)
40 KOG1472 Histone acetyltransfer 99.7 3E-17 6.5E-22 159.9 7.0 144 64-209 563-710 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 2.4E-13 5.2E-18 106.2 3.7 79 104-182 4-89 (114)
42 KOG0955 PHD finger protein BR1 99.2 1.2E-11 2.7E-16 125.5 7.4 107 104-212 566-672 (1051)
43 cd05491 Bromo_TBP7_like Bromod 99.2 1.1E-11 2.5E-16 96.4 4.6 42 144-185 63-104 (119)
44 KOG0008 Transcription initiati 99.2 3E-11 6.6E-16 123.0 6.7 100 107-208 1386-1485(1563)
45 KOG1827 Chromatin remodeling c 99.1 2.2E-10 4.7E-15 110.9 7.8 96 105-202 54-155 (629)
46 KOG0386 Chromatin remodeling c 99.1 1.9E-10 4E-15 115.0 7.1 100 106-207 1027-1132(1157)
47 KOG1472 Histone acetyltransfer 99.0 1.7E-10 3.7E-15 113.1 4.4 121 117-240 300-424 (720)
48 KOG0008 Transcription initiati 98.9 3.7E-09 8.1E-14 108.1 7.4 97 104-202 1262-1358(1563)
49 KOG1474 Transcription initiati 98.6 6.7E-09 1.5E-13 102.6 0.6 92 115-206 4-95 (640)
50 KOG1828 IRF-2-binding protein 98.3 4.9E-07 1.1E-11 82.8 4.9 82 112-196 217-298 (418)
51 KOG1828 IRF-2-binding protein 98.3 8.4E-08 1.8E-12 87.7 -0.5 87 111-199 27-113 (418)
52 COG5076 Transcription factor i 97.3 5.6E-05 1.2E-09 70.3 0.5 91 112-204 272-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 97.2 0.00049 1.1E-08 54.8 4.9 68 145-212 59-126 (131)
54 KOG0644 Uncharacterized conser 94.5 0.031 6.7E-07 56.4 3.3 60 142-201 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 90.7 0.18 3.8E-06 52.6 2.8 64 121-184 533-601 (1080)
56 KOG1827 Chromatin remodeling c 77.3 0.28 6E-06 48.6 -3.0 76 121-198 213-288 (629)
57 KOG0644 Uncharacterized conser 73.0 2.4 5.1E-05 43.4 2.2 68 124-194 86-183 (1113)
58 PF14372 DUF4413: Domain of un 63.7 32 0.00069 25.8 6.3 48 158-205 4-51 (101)
59 PHA01750 hypothetical protein 62.4 16 0.00035 25.7 4.0 28 24-51 42-69 (75)
60 TIGR02606 antidote_CC2985 puta 57.4 18 0.00039 25.4 3.7 27 149-175 12-38 (69)
61 COG3167 PilO Tfp pilus assembl 45.3 51 0.0011 28.2 5.1 25 143-173 136-160 (211)
62 PF03693 RHH_2: Uncharacterise 43.5 35 0.00076 24.7 3.5 27 149-175 15-41 (80)
63 PF04508 Pox_A_type_inc: Viral 43.2 38 0.00082 18.8 2.7 17 25-41 2-18 (23)
64 PF10046 BLOC1_2: Biogenesis o 41.2 63 0.0014 24.2 4.7 32 24-55 59-90 (99)
65 PRK13182 racA polar chromosome 32.6 77 0.0017 26.5 4.3 28 26-53 120-147 (175)
66 PF10845 DUF2576: Protein of u 31.7 70 0.0015 20.8 3.0 23 24-46 11-33 (48)
67 PRK07857 hypothetical protein; 30.7 1.3E+02 0.0028 23.2 4.9 33 17-50 22-54 (106)
68 PF12443 AKNA: AT-hook-contain 29.7 61 0.0013 25.0 2.9 28 20-47 48-75 (106)
69 PF11853 DUF3373: Protein of u 27.9 41 0.00089 32.7 2.1 28 25-52 32-59 (489)
70 PF05377 FlaC_arch: Flagella a 26.5 2.1E+02 0.0045 19.4 4.8 32 24-55 14-45 (55)
71 PF11365 DUF3166: Protein of u 26.0 2.6E+02 0.0057 21.1 5.8 30 23-52 14-43 (96)
72 PF09340 NuA4: Histone acetylt 25.4 2.6E+02 0.0056 20.2 5.5 33 25-57 3-35 (80)
73 PRK10697 DNA-binding transcrip 25.2 1.1E+02 0.0023 24.0 3.7 29 28-56 78-106 (118)
74 KOG0732 AAA+-type ATPase conta 25.0 34 0.00073 36.4 1.1 50 135-184 798-849 (1080)
75 PF04728 LPP: Lipoprotein leuc 23.7 2E+02 0.0043 19.5 4.3 27 24-50 3-29 (56)
76 TIGR01808 CM_M_hiGC-arch monof 23.6 1.4E+02 0.0031 21.0 3.8 27 25-51 1-27 (74)
77 TIGR02978 phageshock_pspC phag 23.2 1.2E+02 0.0026 23.8 3.6 27 30-56 83-109 (121)
78 PF10393 Matrilin_ccoil: Trime 21.9 2E+02 0.0044 18.7 3.9 24 24-47 23-46 (47)
79 PF09006 Surfac_D-trimer: Lung 21.2 2E+02 0.0043 18.8 3.6 22 26-47 1-22 (46)
80 KOG3740 Uncharacterized conser 21.1 1.2E+02 0.0026 30.5 3.9 37 168-204 484-520 (706)
81 PF10303 DUF2408: Protein of u 20.9 3.6E+02 0.0078 21.4 6.0 23 99-121 77-99 (134)
No 1
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.2e-30 Score=204.90 Aligned_cols=111 Identities=32% Similarity=0.492 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
++.+.|..||..|++++.+++|+.||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 5 ~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~ 82 (119)
T cd05496 5 DWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTP 82 (119)
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 688899999999999999999999999987 999999999999999999999999999999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhCCCccHHHHh
Q 026054 183 E-RSDVHVMAKTLLAKFEEKWLQLLPKVTEEEKR 215 (244)
Q Consensus 183 ~-~s~v~~~A~~L~~~fe~~~~~l~~~~~~~~~~ 215 (244)
+ +|.||.+|..|+..|++.++++.+.+....+|
T Consensus 83 ~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~~~~~ 116 (119)
T cd05496 83 NKRSRIYSMTLRLSALFEEHIKKIISDWKSALKR 116 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 99999999999999999999999888654444
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=6.3e-30 Score=197.96 Aligned_cols=105 Identities=33% Similarity=0.576 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcC-CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 026054 102 EELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~-~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~Y 180 (244)
.+|.+.|..+++.|+++ +.+|+|..||++...++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999 99999999999986669999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
|+++|.++.+|..|++.|++.+..++
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988764
No 3
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.97 E-value=1.6e-30 Score=254.51 Aligned_cols=117 Identities=49% Similarity=0.800 Sum_probs=111.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 026054 97 AEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (244)
Q Consensus 97 ~~~~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~N 176 (244)
..+.+.+++++|..||..|+.|+++|||..|||+..+++||||+||++||||+||+.||.++.|.++.+|.+||||||.|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~N 295 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDN 295 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhCCCccHHH
Q 026054 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEE 213 (244)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~~~~~ 213 (244)
|++||+++++||.||..|+++|+.+|+.+...+....
T Consensus 296 cm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~ 332 (640)
T KOG1474|consen 296 CMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESE 332 (640)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 9999999999999999999999999999887765443
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=9.4e-30 Score=196.63 Aligned_cols=102 Identities=40% Similarity=0.635 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
++--.+..||..|++++.++||..||++...++||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34445678899999999999999999988666999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
++|.++.+|..|++.|++++++
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999875
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.3e-29 Score=192.53 Aligned_cols=95 Identities=31% Similarity=0.547 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 026054 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (244)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 184 (244)
++.|..|++.|++++.+++|..||++.. +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4679999999999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 026054 185 SDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 185 s~v~~~A~~L~~~fe~~ 201 (244)
|.++.+|..|++.|.+.
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=6.3e-29 Score=188.83 Aligned_cols=96 Identities=40% Similarity=0.768 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 026054 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (244)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 184 (244)
+..|..||..|++++.+++|+.||++.. +|+||++|++||||+||++||++|.|+|+++|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4689999999999999999999999988 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 026054 185 SDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 185 s~v~~~A~~L~~~fe~~~ 202 (244)
|.++.+|..|++.|+++|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999876
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.4e-28 Score=192.48 Aligned_cols=101 Identities=36% Similarity=0.634 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
..+..|..||..|+.++.+++|..||+... +||||++|++||||+||++||++|.|.|+.+|.+||+|||.||++||+
T Consensus 12 ~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 12 LNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 567889999999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
++|.++.+|..|+..|++.++++
T Consensus 90 ~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 90 EHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 8
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.9e-28 Score=188.45 Aligned_cols=101 Identities=32% Similarity=0.475 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.+.+.|..|+..|..++.+++|..||+... +|+||++|++||||+||++||++|.|+++.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 467789999999999999999999999977 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
++|.++.+|..|++.|.+.+..+
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998887654
No 9
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=2.8e-28 Score=188.99 Aligned_cols=103 Identities=36% Similarity=0.634 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhh
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~---~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
...+.|..||..|++++.+++|..||++ . +|+||++|++||||+||++||+. +.|.++++|.+||+|||+||+.
T Consensus 4 ~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~ 80 (109)
T cd05502 4 IDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYK 80 (109)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 5 99999999999999999999998 5999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
||+++|.++.+|..|+..|++.+.+++|.
T Consensus 81 yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 81 FNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999984
No 10
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.7e-28 Score=186.91 Aligned_cols=99 Identities=53% Similarity=0.994 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.|+.+|.+||++||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999999875559999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026054 184 RSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (244)
+|.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999886
No 11
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.7e-28 Score=185.93 Aligned_cols=97 Identities=28% Similarity=0.499 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
++|...|..++..|. ++.+|+|..||++.. +||||.+|++||||+||++||++|.|+++++|.+||+|||.||+.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 356667888999999 999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 026054 182 DERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~ 201 (244)
+++|.++.+|..|.+.|...
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999988754
No 12
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=3.7e-28 Score=185.73 Aligned_cols=100 Identities=37% Similarity=0.656 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
++.+|..|++.|.+++.+++|..||++.. +|+||++|++||||+||++||+++.|.|+.+|..||+|||+||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 026054 184 RSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~l 205 (244)
+|.++.+|..|+..|++.++++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998764
No 13
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=6.7e-28 Score=184.07 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 026054 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (244)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 184 (244)
++.|..|+..|++++.+++|..++ .. +||||++|++||||+||++||.+|.|.|+.+|.+||+|||.||++||+++
T Consensus 4 l~~ce~il~~l~~~~~s~~f~~~p--~~--~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~ 79 (102)
T cd05501 4 LLKCEFLLLKVYCMSKSGFFISKP--YY--IRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD 79 (102)
T ss_pred HHHHHHHHHHHHhCcccccccCCC--CC--CCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 456999999999999999997743 34 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhCC
Q 026054 185 SDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 185 s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
.++.+|..|++.|++.|+++++
T Consensus 80 -~~~~~a~~L~~~Fek~~~~~f~ 101 (102)
T cd05501 80 -DFGQVGITLEKKFEKNFKEVFA 101 (102)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998864
No 14
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=6.7e-28 Score=187.63 Aligned_cols=101 Identities=28% Similarity=0.510 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHcC-CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 103 ELIRQFGTILRNITQH-KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~-~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
++...|..|+..|+++ +.+++|..||++.. +||||++|++||||+||++||++|.|+|+.+|.+||+|||.||+.||
T Consensus 7 ~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 7 EFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 6888999999999999 89999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHhh
Q 026054 182 DERS-DVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 182 ~~~s-~v~~~A~~L~~~fe~~~~~l 205 (244)
++++ .++.+|..|++.|+..+..+
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9766 67899999999999998776
No 15
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=9.4e-28 Score=183.82 Aligned_cols=98 Identities=44% Similarity=0.876 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcC---CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 105 ~~~~~~il~~l~~~---~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
++.|..||..|+++ +.+++|..||++...++||||++|++||||++|++||++|.|.|+.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46899999999999 789999999998765699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 026054 182 DERSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (244)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 16
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.3e-27 Score=183.51 Aligned_cols=99 Identities=31% Similarity=0.533 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.+.+.|..|+..|++++.+++|..||++...++||||++|++||||++|++||.++.|.++.+|..||++||.||+.||+
T Consensus 4 ~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 83 (103)
T cd05500 4 HQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTFNG 83 (103)
T ss_pred HHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56789999999999999999999999987666999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 026054 183 ERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~ 201 (244)
++|.++.+|..|+..|++.
T Consensus 84 ~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 84 PEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999875
No 17
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1e-27 Score=183.65 Aligned_cols=98 Identities=36% Similarity=0.790 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcC---CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 105 IRQFGTILRNITQH---KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 105 ~~~~~~il~~l~~~---~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
++.|..||..|+++ +.+++|+.||++....+||||++|++||||++|++||+++.|.|+.+|.+||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46799999999985 579999999999844499999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 026054 182 DERSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~ 202 (244)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=9.2e-28 Score=185.57 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~------s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
|.++|..|++.|..+.+ +++|..||+... +||||++|++||||++|++||.+|.|.++.+|..||.|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67788999999998876 899999999988 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
+.||+++|.+|.+|..|++.|.+.+++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998865
No 19
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.95 E-value=1.7e-27 Score=185.35 Aligned_cols=105 Identities=28% Similarity=0.484 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
++...|..|+..|+.++.+++|..||+... +||||++|++||||+||++||+++.|.|+.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 566688999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhhCCCc
Q 026054 183 ER----SDVHVMAKTLLAKFEEKWLQLLPKV 209 (244)
Q Consensus 183 ~~----s~v~~~A~~L~~~fe~~~~~l~~~~ 209 (244)
++ +.++.+|..|++.|.+++.+..|.+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 111 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAELDPL 111 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 94 6999999999999999999988754
No 20
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.8e-27 Score=178.70 Aligned_cols=93 Identities=30% Similarity=0.440 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
|...|..|++.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.|+.+|.+||+|||.||++||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 026054 184 RSDVHVMAKTLLAKF 198 (244)
Q Consensus 184 ~s~v~~~A~~L~~~f 198 (244)
+|.++.+|..|...-
T Consensus 80 ~s~~~~~A~~L~~~~ 94 (98)
T cd05513 80 DTIYYKAAKKLLHSG 94 (98)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997654
No 21
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=6.1e-27 Score=182.35 Aligned_cols=103 Identities=31% Similarity=0.548 Sum_probs=97.5
Q ss_pred HHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 026054 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (244)
Q Consensus 107 ~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~ 186 (244)
.+..|+.+|++++.+++|..||++.. +|+||++|++||||++|++||+++.|+++.+|.+||+|||+||..||+++|.
T Consensus 4 ~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~ 81 (112)
T cd05511 4 ILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSV 81 (112)
T ss_pred HHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46789999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccH
Q 026054 187 VHVMAKTLLAKFEEKWLQLLPKVTE 211 (244)
Q Consensus 187 v~~~A~~L~~~fe~~~~~l~~~~~~ 211 (244)
++.+|..|...|+..+..+..++..
T Consensus 82 i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 82 YTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999887655543
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=1.3e-26 Score=176.36 Aligned_cols=90 Identities=28% Similarity=0.500 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 026054 106 RQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (244)
Q Consensus 106 ~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s 185 (244)
..|..++++|..++.+++|..||+... +||||++|++||||+||++||.++.|.|+++|..||+|||.||+.||+++|
T Consensus 4 ~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s 81 (98)
T cd05512 4 VLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDT 81 (98)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 457899999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 026054 186 DVHVMAKTLLAK 197 (244)
Q Consensus 186 ~v~~~A~~L~~~ 197 (244)
.+|++|..|++.
T Consensus 82 ~~~~~A~~l~~~ 93 (98)
T cd05512 82 IFYRAAVRLRDQ 93 (98)
T ss_pred HHHHHHHHHHHh
Confidence 999999999865
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=2.5e-26 Score=176.34 Aligned_cols=96 Identities=29% Similarity=0.449 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHcC------CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 026054 105 IRQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (244)
Q Consensus 105 ~~~~~~il~~l~~~------~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~ 178 (244)
.+.|..|++.|+.+ +.+++|..||+... +||||++|++||||++|++||++|.|.|+.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 45688888888844 45899999999998 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 026054 179 KYNDERSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~ 202 (244)
.||+++|.++.+|..|++.|.+++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=3.4e-26 Score=178.45 Aligned_cols=102 Identities=25% Similarity=0.399 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
..+.|..|++.|.+++ .+.+|..+|+... +||||++|++||||+||++||.++.|.|+.+|.+||+|||+||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999754 4578999999888 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
+.||+++|.++.+|..|++.|++.++++.+
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988764
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=4e-26 Score=175.82 Aligned_cols=96 Identities=27% Similarity=0.471 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHcC------CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 106 RQFGTILRNITQH------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 106 ~~~~~il~~l~~~------~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
++|..|+..|..+ +.+++|..||+... +||||++|++||||++|++||.++.|.++.+|..||.|||.||++
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~ 80 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACK 80 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566777776655 45899999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWL 203 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~ 203 (244)
||+++|.++.+|..|++.|.++..
T Consensus 81 yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 81 YNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999988753
No 26
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.6e-26 Score=174.19 Aligned_cols=96 Identities=32% Similarity=0.408 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
|...|..|++.|...+ .+++|..+|++.. +||||++|++||||++|++||.+|.|.|+.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4556777888777754 4799999999988 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~ 201 (244)
+.||+++|.++.+|..|++.|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
No 27
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.1e-25 Score=172.69 Aligned_cols=81 Identities=28% Similarity=0.507 Sum_probs=78.2
Q ss_pred CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026054 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (244)
Q Consensus 119 ~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~f 198 (244)
..+++|..||+... +||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||+++|.++.+|..|++.|
T Consensus 22 ~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L~~~f 99 (103)
T cd05520 22 LLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKLQKLM 99 (103)
T ss_pred CccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 46899999999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 026054 199 EEK 201 (244)
Q Consensus 199 e~~ 201 (244)
+++
T Consensus 100 ~~~ 102 (103)
T cd05520 100 QAK 102 (103)
T ss_pred HHh
Confidence 864
No 28
>smart00297 BROMO bromo domain.
Probab=99.93 E-value=3.5e-25 Score=170.00 Aligned_cols=101 Identities=43% Similarity=0.728 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
..+...|..|+..+.+++.+++|..||+... +|+||.+|++||||++|++||++|.|.|+.+|.+||++||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3567789999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
+++|.++.+|..|...|++.|++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=2.5e-25 Score=170.83 Aligned_cols=99 Identities=30% Similarity=0.431 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
++..++..+....+ ...+..+.+|..+|+... +||||++|++||||+||++||.++.|.|+.+|.+||+|||.||+.
T Consensus 4 ~~~~l~~~v~~~~d-~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 4 RMLALFLYVLEYRE-GSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHhhc-cCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444444443322 234567899999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 026054 180 YNDERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~ 201 (244)
||+++|.++.+|..|++.|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 30
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=2e-25 Score=171.40 Aligned_cols=94 Identities=26% Similarity=0.405 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 106 RQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 106 ~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
+.|..|+..|+.+. .+++|..+|++.. +||||++|++||||++|++||+++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 3 QILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred HHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667777777654 4799999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 026054 180 YNDERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~ 201 (244)
||+++|.++.+|..|++.|+..
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999753
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=6e-25 Score=174.96 Aligned_cols=99 Identities=28% Similarity=0.407 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHH---cCCCCCCCcCcCCcC-CCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 026054 103 ELIRQFGTILRNIT---QHKWAWPFMQPVDVK-GLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (244)
Q Consensus 103 ~l~~~~~~il~~l~---~~~~s~~F~~pvd~~-~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~ 178 (244)
.+...|..++..|. +++.+++|..||+.. . +|+||++|++||||+||++||+++.|+++++|..||+|||.||+
T Consensus 24 ~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~--~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~ 101 (128)
T cd05529 24 EERERLISGLDKLLLSLQLEIAEYFEYPVDLRAW--YPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAE 101 (128)
T ss_pred HHHHHHHHHHHHHHhcccCcccccccCCCCcccc--CCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 44556777788888 899999999999998 7 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHH
Q 026054 179 KYNDERSDVHVMAKTLLAKFEEKWL 203 (244)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (244)
+||+++|.++.+|..|+..|...+.
T Consensus 102 ~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 102 TFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998865
No 32
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=8.1e-24 Score=163.15 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
|.++|..+++.|+..+ .+.+|..+|+... +||||++|++||||++|++||++ |.++.+|.+||.|||+||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 4456777777777664 3579999999888 99999999999999999999998 999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEKWL 203 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~ 203 (244)
+.||+++|.++.+|..|++.|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988764
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.2e-23 Score=161.70 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=78.7
Q ss_pred CCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026054 118 HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAK 197 (244)
Q Consensus 118 ~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~ 197 (244)
++.+++|..+|+... +||||++|++||||++|++||..+.|.++.+|..||+|||.||+.||+++|.++.+|..|++.
T Consensus 22 ~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~~~ 99 (104)
T cd05522 22 RLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLEKE 99 (104)
T ss_pred CcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 457999999999888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 026054 198 FEEK 201 (244)
Q Consensus 198 fe~~ 201 (244)
|+..
T Consensus 100 f~~l 103 (104)
T cd05522 100 ARLL 103 (104)
T ss_pred HHHh
Confidence 9863
No 34
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.90 E-value=1.1e-23 Score=154.82 Aligned_cols=84 Identities=43% Similarity=0.726 Sum_probs=79.7
Q ss_pred HHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 026054 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (244)
Q Consensus 108 ~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v 187 (244)
|..|++.|++++.+++|..||+... +|+|+++|+.||||++|++||++|.|.++.+|..||++||.||+.||+++|.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8899999999999999999998888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 026054 188 HVMAKT 193 (244)
Q Consensus 188 ~~~A~~ 193 (244)
+.+|.+
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999964
No 35
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.90 E-value=2.4e-23 Score=155.67 Aligned_cols=95 Identities=42% Similarity=0.663 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcC--CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 106 RQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 106 ~~~~~il~~l~~~--~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
..|..+++.+..+ +.+++|..||+... +|+||.+|++||||.+|+.||.++.|.++.+|.+||++||.||+.||++
T Consensus 3 ~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~ 80 (99)
T cd04369 3 KKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGP 80 (99)
T ss_pred HHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4688999999999 99999999999977 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026054 184 RSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (244)
+|.++.+|..|...|++.+
T Consensus 81 ~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 81 GSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999998753
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.6e-22 Score=156.34 Aligned_cols=98 Identities=16% Similarity=0.158 Sum_probs=86.3
Q ss_pred HHHHHHHHHc-CCCCCCCcCcCCcCCC---CCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 108 FGTILRNITQ-HKWAWPFMQPVDVKGL---GLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 108 ~~~il~~l~~-~~~s~~F~~pvd~~~~---~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
+..++.++.+ -+.++||..||..... ++|+||.+|++||||+||++||++|.|+++++|.+||.|||+||..||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 5667777777 5778999999963322 49999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q 026054 184 RSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~l 205 (244)
+|.++.+|..|.......+.++
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766554
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.82 E-value=5.5e-20 Score=142.07 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 026054 105 IRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (244)
Q Consensus 105 ~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~ 178 (244)
...+..|+..|++|. .+.+|...|+. .|+||.+|+.||||.+|++||++|.|.++++|..||.+||.||+
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~----~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPEL----AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCCc----ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 345677888888875 48899998883 57889999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 179 KYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
+||.++|.+|.+|..|+.+|.....++.
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998866553
No 38
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.79 E-value=1.5e-19 Score=188.05 Aligned_cols=98 Identities=38% Similarity=0.748 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHH
Q 026054 108 FGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDV 187 (244)
Q Consensus 108 ~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v 187 (244)
|..|+..|..|+.+|||..||+... +||||+||++||||+||+.|+..|.|.++.+|..||.|||.||.+||.+ |.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999999 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhhCCC
Q 026054 188 HVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 188 ~~~A~~L~~~fe~~~~~l~~~ 208 (244)
++++..|..+|...|...+|.
T Consensus 1383 ~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred hhhcchHHHHHHHHHHhhcCC
Confidence 999999999999999887763
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.78 E-value=7e-19 Score=162.92 Aligned_cols=92 Identities=32% Similarity=0.439 Sum_probs=87.4
Q ss_pred CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026054 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (244)
Q Consensus 119 ~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~f 198 (244)
..+++|..+|+... +|+||.+|+.||||.+|+++|+.+.|.++++|..|++|||.||.+||+++|.++.+|..|+..|
T Consensus 164 ~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~ 241 (371)
T COG5076 164 FLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYF 241 (371)
T ss_pred ccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHH
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCccHH
Q 026054 199 EEKWLQLLPKVTEE 212 (244)
Q Consensus 199 e~~~~~l~~~~~~~ 212 (244)
...+..+.+.....
T Consensus 242 ~~~i~~~~~~~~~~ 255 (371)
T COG5076 242 LKLIEEIPEEMLEL 255 (371)
T ss_pred HHHHHhccccchhh
Confidence 99999888776543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.69 E-value=3e-17 Score=159.94 Aligned_cols=144 Identities=28% Similarity=0.468 Sum_probs=117.7
Q ss_pred CCCCCCccccccccCC---CCCcchhhhHHHHHHHH-HHHhHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchh
Q 026054 64 NSKGSSTLKDKEKERH---VPSIRKQQQEASRREKA-AEKRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYY 139 (244)
Q Consensus 64 ~~~~~~~~~~~~r~r~---~~~~~k~~~~~~~~e~~-~~~~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy 139 (244)
+.+|.++.+++.+..+ +|+.+...+.....+.. ..+....+...+..++..|.+|..+|||.+||+..+ +||||
T Consensus 563 v~~gl~~~~~~~~~~~~~~iPg~~E~~~~~~~~~~r~~~~~~~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy 640 (720)
T KOG1472|consen 563 VYPGLECFKDGVPQIPPRKIPGFRESGWKPEKESYRQEYKKPGKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYY 640 (720)
T ss_pred cccccccccccccccCcccCCCchhhccCcchHHHHhhhcccchhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHH
Confidence 5567777777644443 45554433332222222 113344667789999999999999999999999999 99999
Q ss_pred hccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 026054 140 EVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (244)
Q Consensus 140 ~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~ 209 (244)
++|++||||.||+.+|..+.|..+..|++|+.+||.||+.||+.++.+++.|..|...|...+...+...
T Consensus 641 ~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~~~~le~~~~~k~~~~i~~~ 710 (720)
T KOG1472|consen 641 DVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSDTQYYKCAQALEKFFLFKLNELILRV 710 (720)
T ss_pred HHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCccchheecccchhhhhcchhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988765543
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.38 E-value=2.4e-13 Score=106.18 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCC-------CCCHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKE-------YKNVREICTDVRLVFKN 176 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~-------Y~s~~eF~~Dv~LIf~N 176 (244)
.+..|..++..+..++.+|||..||++...++||||++|++||||+||+++|..+. |..-..+.+++..++.|
T Consensus 4 ~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T cd05494 4 ALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGR 83 (114)
T ss_pred HHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccc
Confidence 45677888888888999999999999954459999999999999999999999973 44445556666666666
Q ss_pred HhhhCC
Q 026054 177 AMKYND 182 (244)
Q Consensus 177 a~~YN~ 182 (244)
|..+|.
T Consensus 84 ~~~~~~ 89 (114)
T cd05494 84 RSPSNI 89 (114)
T ss_pred cCcccc
Confidence 666664
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.24 E-value=1.2e-11 Score=125.46 Aligned_cols=107 Identities=26% Similarity=0.402 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
..+.+..+++.+...+....|..||+..+ +|||.++|++||||.+++.++.++.|+++++|.+|+.+|+.||+.||..
T Consensus 566 ~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn~~ 643 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYNAK 643 (1051)
T ss_pred HHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhhcc
Confidence 34456688888888889999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 184 RSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
+..+|+.|..+++.....+....-...++
T Consensus 644 dtv~~r~av~~~e~~~~~~~~arke~e~~ 672 (1051)
T KOG0955|consen 644 DTVYYRAAVRLRELIKKDFRNARKEPESE 672 (1051)
T ss_pred CeehHhhhHHHHhhhhhHHHhcccchhhh
Confidence 99999999999999988887765554433
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.22 E-value=1.1e-11 Score=96.39 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 026054 144 KPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (244)
Q Consensus 144 ~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s 185 (244)
.||||+||++||.+|.|.++.+|++||+|||.||+.||+++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 589999999999999999999999999999999999998643
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=99.18 E-value=3e-11 Score=122.98 Aligned_cols=100 Identities=28% Similarity=0.515 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 026054 107 QFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (244)
Q Consensus 107 ~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~ 186 (244)
.+-.|+.++..-+.+|+|..||+.+. +|+||.+|++||||.+|.+++..+.|.+..+|.+||++|+.||..||+.++.
T Consensus 1386 ~~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~ 1463 (1563)
T KOG0008|consen 1386 ILDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESA 1463 (1563)
T ss_pred hhhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCcccc
Confidence 35677778788899999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCC
Q 026054 187 VHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 187 v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
+..-|+.+-.+....+.+....
T Consensus 1464 y~~k~~k~~ev~~~~~~e~~~~ 1485 (1563)
T KOG0008|consen 1464 YTKKARKIGEVGLANLLEYIEH 1485 (1563)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877776655433
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.09 E-value=2.2e-10 Score=110.86 Aligned_cols=96 Identities=27% Similarity=0.314 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 026054 105 IRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (244)
Q Consensus 105 ~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~ 178 (244)
.-++..++..+..+. .+..|.+.++... .|+||.+|..||+|..|++|+..+.|.+.+.|..|+.+|+.||+
T Consensus 54 ~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~ 131 (629)
T KOG1827|consen 54 IPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENAR 131 (629)
T ss_pred HHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 334555555555543 4788999999999 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 026054 179 KYNDERSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 179 ~YN~~~s~v~~~A~~L~~~fe~~~ 202 (244)
.||.+++.+++++..|...|....
T Consensus 132 ~~n~~ds~~~~~s~~l~~~~~~~~ 155 (629)
T KOG1827|consen 132 LYNRPDSLIYKDSGELEKYFISLE 155 (629)
T ss_pred HhcCcchhhhhhhhhhhcchhhhh
Confidence 999999999999999999998764
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.08 E-value=1.9e-10 Score=115.04 Aligned_cols=100 Identities=31% Similarity=0.438 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 106 RQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 106 ~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
+.|..|+....++. .+..|...++.+. +||||.+|+.||++..|.++|.++.|.+..+...|+.++|.||++
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 45777777777554 4789999999999 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
||..+|.+|.+|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999999888765
No 47
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.03 E-value=1.7e-10 Score=113.13 Aligned_cols=121 Identities=26% Similarity=0.407 Sum_probs=92.2
Q ss_pred cCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026054 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (244)
Q Consensus 117 ~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~ 196 (244)
.+..+++|..+|+... .|+||.||+.||||+++.+++..+.|.+.+.|+.|+.+||.||..||...+.....-..+..
T Consensus 300 ~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~ 377 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMN 377 (720)
T ss_pred ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhc
Confidence 3788999999999999 99999999999999999999999999999999999999999999999877776666666655
Q ss_pred HHHHHHHhhCCCcc----HHHHhhHHHHHHHHHhHHHhhhHHHhhhhc
Q 026054 197 KFEEKWLQLLPKVT----EEEKRREEEEAEAQLDMQLAQDAAHAKMAR 240 (244)
Q Consensus 197 ~fe~~~~~l~~~~~----~~~~~~~~~e~~~q~~~~~~~~~~~a~~a~ 240 (244)
-+...+-+.++.+. ..-..+ ..+..+.....+..+..|+.+|+
T Consensus 378 ~~s~~~~~~~~~~li~~~~~f~~q-L~empkEyi~rlv~d~~h~~~~~ 424 (720)
T KOG1472|consen 378 SKSLALIKEIPIELIGLRNEFSKQ-LPEMPKEYISRLVFDTSHHVMAR 424 (720)
T ss_pred cCcHhHhccchhhhccchhHHHhh-cccchHHHHHhhcccccccccee
Confidence 55543334343332 222222 23444455556666667777763
No 48
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.87 E-value=3.7e-09 Score=108.11 Aligned_cols=97 Identities=29% Similarity=0.482 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
+...+..|++++...+.+.+|..||+... ++|||.||+.||||.++++.+....|.+-++|..|+.||++|..+||++
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~ 1339 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGP 1339 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCc
Confidence 44467889999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 026054 184 RSDVHVMAKTLLAKFEEKW 202 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~ 202 (244)
.+.+...+..+....-..|
T Consensus 1340 ~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1340 LASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 9999999887766654444
No 49
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.63 E-value=6.7e-09 Score=102.59 Aligned_cols=92 Identities=38% Similarity=0.660 Sum_probs=84.9
Q ss_pred HHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 026054 115 ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTL 194 (244)
Q Consensus 115 l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L 194 (244)
...|..+|+|..||+...+.+|+||.+|++|||+++|..++.+..|.+..+..+|+..+|.||..||..+..+..++..+
T Consensus 4 ~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~ 83 (640)
T KOG1474|consen 4 ARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSL 83 (640)
T ss_pred cccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccc
Confidence 45678999999999999889999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 026054 195 LAKFEEKWLQLL 206 (244)
Q Consensus 195 ~~~fe~~~~~l~ 206 (244)
...|........
T Consensus 84 ~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 84 EKLFPKKLRSMP 95 (640)
T ss_pred hhhccccccccc
Confidence 999876665443
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.35 E-value=4.9e-07 Score=82.78 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 026054 112 LRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMA 191 (244)
Q Consensus 112 l~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A 191 (244)
.+++.......+|..|+-... +|.|.-+|++|++++|+..+..++.|.| -+|..|+.+|+.||++||.+...+|..|
T Consensus 217 ~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 217 EDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred HHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 455556667888999998888 9999999999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHH
Q 026054 192 KTLLA 196 (244)
Q Consensus 192 ~~L~~ 196 (244)
..+..
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 88766
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.33 E-value=8.4e-08 Score=87.70 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=75.5
Q ss_pred HHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q 026054 111 ILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVM 190 (244)
Q Consensus 111 il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~ 190 (244)
++..+-+...-..|.-||...- .|+|.+||+.|||+.|++.+++.+.|.+..+|..|.++++.||..||..++.++..
T Consensus 27 hlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~a 104 (418)
T KOG1828|consen 27 HLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVA 104 (418)
T ss_pred HHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCcccccc
Confidence 3344444445566777888888 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 026054 191 AKTLLAKFE 199 (244)
Q Consensus 191 A~~L~~~fe 199 (244)
|+.|..+-.
T Consensus 105 aKrL~~v~~ 113 (418)
T KOG1828|consen 105 AKRLCPVRL 113 (418)
T ss_pred ccccchhhc
Confidence 998876643
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.34 E-value=5.6e-05 Score=70.27 Aligned_cols=91 Identities=32% Similarity=0.499 Sum_probs=82.4
Q ss_pred HHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHH
Q 026054 112 LRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMA 191 (244)
Q Consensus 112 l~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A 191 (244)
+.....+..+|+|..+++... .|+|+++|..+|++.+.+-++..+.|.....|..|..+++.||..||+....++..+
T Consensus 272 i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
T COG5076 272 ITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNA 349 (371)
T ss_pred ccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhc
Confidence 344456667999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 026054 192 KTLLAKFEEKWLQ 204 (244)
Q Consensus 192 ~~L~~~fe~~~~~ 204 (244)
..+...+.....-
T Consensus 350 ~~~~~~~~~~~~~ 362 (371)
T COG5076 350 NVLEDFVIKKTRL 362 (371)
T ss_pred cchhhhHhhhhhh
Confidence 9998888776543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.25 E-value=0.00049 Score=54.83 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 145 PMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 145 PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
|.||..|++||+.|.|+|+.+|.+||-.|+.-++.=.+....+-+.-..+..+|.+.+..+++-+..+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999886655455555556677788999998888776543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.50 E-value=0.031 Score=56.40 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=52.7
Q ss_pred cCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 026054 142 IDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEK 201 (244)
Q Consensus 142 Ik~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~fe~~ 201 (244)
-.-|..|..|..+|++..|++.+.|..||..|.+||.+|.+.+..+...+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 456889999999999999999999999999999999999998887777777777776544
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.18 Score=52.64 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCCCcCcCCcCCC---CCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHH--HHHHHHHHHhhhCCCC
Q 026054 121 AWPFMQPVDVKGL---GLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICT--DVRLVFKNAMKYNDER 184 (244)
Q Consensus 121 s~~F~~pvd~~~~---~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~--Dv~LIf~Na~~YN~~~ 184 (244)
+..|-.|++.... .+++|-.+|+.|||+...-.++..+.|.++.+|.. ++.|||.|++.||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 5667777764331 24589999999999999999999999999999999 9999999999999865
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=77.26 E-value=0.28 Score=48.57 Aligned_cols=76 Identities=5% Similarity=-0.128 Sum_probs=67.6
Q ss_pred CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026054 121 AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKF 198 (244)
Q Consensus 121 s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~f 198 (244)
...|+..++... +|+||.+++-||.++.+.+++..+.|.....|..|..+.|.|+..|+.....++..+..+.+.+
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~d 288 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEED 288 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccc
Confidence 455667777777 9999999999999999999999999999999999999999999999999998888888776543
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=73.04 E-value=2.4 Score=43.45 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=53.4
Q ss_pred CcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHH
Q 026054 124 FMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEY--------------K----------NVRE------ICTDVRLV 173 (244)
Q Consensus 124 F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y--------------~----------s~~e------F~~Dv~LI 173 (244)
|.-++|... .|-|+.+..-|.+|+|++.+|.+..| . ++.+ ...-+.+|
T Consensus 86 lv~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i 163 (1113)
T KOG0644|consen 86 LVPMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSI 163 (1113)
T ss_pred hccCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccc
Confidence 455677777 88899999999999999999998877 2 3333 56678889
Q ss_pred HHHHhhhCCCCCHHHHHHHHH
Q 026054 174 FKNAMKYNDERSDVHVMAKTL 194 (244)
Q Consensus 174 f~Na~~YN~~~s~v~~~A~~L 194 (244)
-.||..++.|++ +++.++.+
T Consensus 164 ~~at~~~akPgt-mvqkmk~i 183 (1113)
T KOG0644|consen 164 GCATFSIAKPGT-MVQKMKNI 183 (1113)
T ss_pred ccceeeecCcHH-HHHHHHHH
Confidence 999999999999 55544433
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=63.74 E-value=32 Score=25.80 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 158 KEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 158 ~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
..|.|..-|...+..|-.....++..+..+..+|..+...|.+-|.+.
T Consensus 4 ~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 4 SSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 458888889888888888777778778999999999999999999754
No 59
>PHA01750 hypothetical protein
Probab=62.43 E-value=16 Score=25.68 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=24.9
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERVNEIE 51 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 51 (244)
.||..|+.++.++.-+++.+++++.++-
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6899999999999999999999987664
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=57.41 E-value=18 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 026054 149 STIKKQMEAKEYKNVREICTDVRLVFK 175 (244)
Q Consensus 149 ~tI~~kL~~~~Y~s~~eF~~Dv~LIf~ 175 (244)
.-|+..+.+|.|.|..+++.|..+++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999877664
No 61
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.32 E-value=51 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=19.6
Q ss_pred CCCCChHHHHHHHhcCCCCCHHHHHHHHHHH
Q 026054 143 DKPMDFSTIKKQMEAKEYKNVREICTDVRLV 173 (244)
Q Consensus 143 k~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LI 173 (244)
.-|++++. .|.|..+..|+.||--+
T Consensus 136 elPisi~v------~G~YHdia~F~~~VasL 160 (211)
T COG3167 136 ELPISISV------TGSYHDIAQFVSDVASL 160 (211)
T ss_pred hcceEEEE------cccHHHHHHHHHHHhhc
Confidence 34776664 68999999999999654
No 62
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=43.49 E-value=35 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 026054 149 STIKKQMEAKEYKNVREICTDVRLVFK 175 (244)
Q Consensus 149 ~tI~~kL~~~~Y~s~~eF~~Dv~LIf~ 175 (244)
.-|...+.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999665554
No 63
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=43.16 E-value=38 Score=18.82 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHhHH
Q 026054 25 EVESFTLRVDDIFQKVD 41 (244)
Q Consensus 25 ~~~~~~~~~~~~~~k~~ 41 (244)
|++++|+++.++..++.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 64
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=41.22 E-value=63 Score=24.17 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHhh
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQFYL 55 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 55 (244)
.+++.+-++||.|..+|.+||..+...+.+.+
T Consensus 59 ~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk 90 (99)
T PF10046_consen 59 EELQPYLQQIDQIEEQVTELEQTVYELDEYSK 90 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888899999988887777544
No 65
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=32.65 E-value=77 Score=26.49 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHH
Q 026054 26 VESFTLRVDDIFQKVDKLEERVNEIEQF 53 (244)
Q Consensus 26 ~~~~~~~~~~~~~k~~~l~~~~~~~~~~ 53 (244)
|=.=|++++++.+++.+|+++|...+..
T Consensus 120 ll~hr~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 120 LLQHRREMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344677888888888899998776653
No 66
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=31.68 E-value=70 Score=20.75 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHH
Q 026054 24 AEVESFTLRVDDIFQKVDKLEER 46 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~ 46 (244)
-+.+.||+.+.+++.+++.|..+
T Consensus 11 ydreqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 11 YDREQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999998855
No 67
>PRK07857 hypothetical protein; Provisional
Probab=30.75 E-value=1.3e+02 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=26.2
Q ss_pred CCCCCchHHHHHHHhHHHHHHHhHHHHHHHHHHH
Q 026054 17 GNPESDVAEVESFTLRVDDIFQKVDKLEERVNEI 50 (244)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 50 (244)
++. .+..+++.+|.++|+|..++-+|-.+.-.+
T Consensus 22 ~~p-~~~~~L~~lR~eID~ID~eIl~LL~eR~~l 54 (106)
T PRK07857 22 DDP-LSDAEIDELREEIDRLDAEILALVKRRTEV 54 (106)
T ss_pred CCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 466899999999999999999987666443
No 68
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=29.70 E-value=61 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=25.2
Q ss_pred CCchHHHHHHHhHHHHHHHhHHHHHHHH
Q 026054 20 ESDVAEVESFTLRVDDIFQKVDKLEERV 47 (244)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~k~~~l~~~~ 47 (244)
..|+.+...|+-++|++.+||+...+++
T Consensus 48 ~ege~~~qkL~eqteeLK~kvqe~sk~i 75 (106)
T PF12443_consen 48 REGEQMIQKLGEQTEELKDKVQEFSKRI 75 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3578999999999999999999998887
No 69
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=27.88 E-value=41 Score=32.73 Aligned_cols=28 Identities=21% Similarity=0.590 Sum_probs=21.8
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q 026054 25 EVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (244)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (244)
+++.|+++|++|+.|+..+..+++.++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5788888888888888777777777665
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.49 E-value=2.1e+02 Score=19.36 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=21.7
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHHHHhh
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERVNEIEQFYL 55 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~ 55 (244)
+.+..++.+.++|...+.++++.+.++-..|.
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777766655554
No 71
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=26.00 E-value=2.6e+02 Score=21.07 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.6
Q ss_pred hHHHHHHHhHHHHHHHhHHHHHHHHHHHHH
Q 026054 23 VAEVESFTLRVDDIFQKVDKLEERVNEIEQ 52 (244)
Q Consensus 23 ~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 52 (244)
+.|++-+|+.|.+|..+-+.|...++.+-.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999998876554
No 72
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=25.37 E-value=2.6e+02 Score=20.16 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 026054 25 EVESFTLRVDDIFQKVDKLEERVNEIEQFYLNA 57 (244)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~s~ 57 (244)
+|..+-.+-.++...+..+|++|-+.|..|-..
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~~ 35 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETSYLED 35 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555666667777888899998888888873
No 73
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=25.20 E-value=1.1e+02 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 026054 28 SFTLRVDDIFQKVDKLEERVNEIEQFYLN 56 (244)
Q Consensus 28 ~~~~~~~~~~~k~~~l~~~~~~~~~~~~s 56 (244)
.=++.|+++..+.+.+|+++..+|.+..|
T Consensus 78 s~~~~l~~~~~~~~~~e~Rlr~mE~yVTS 106 (118)
T PRK10697 78 SSSELLDEVDRELAAGEQRLREMERYVTS 106 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777777777777777777775554
No 74
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=34 Score=36.39 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=42.1
Q ss_pred CCchhhccCCC--CChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q 026054 135 LDDYYEVIDKP--MDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDER 184 (244)
Q Consensus 135 ~pdYy~iIk~P--MdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~ 184 (244)
+.+++.++..| |++..+.+++..|.|.++.+|+.|+.+|..||..+....
T Consensus 798 ~~~~v~~l~~~~~~~~~~~~~r~~s~~~~~~~q~l~d~~li~r~a~~~~~~~ 849 (1080)
T KOG0732|consen 798 SDNVVKILQINQMDWLEEILKRVWSGEYSTPKQFLSDIKLILRDASSSEDSE 849 (1080)
T ss_pred cccceeehhhhhhHHHHHHhhcCCcccccccccccccchhhcccchhccCch
Confidence 56777777777 455568999999999999999999999999999887643
No 75
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.68 E-value=2e+02 Score=19.54 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHH
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERVNEI 50 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~~ 50 (244)
+.++.|-..|.++..||++|...++.+
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~l 29 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNAL 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889998888877554
No 76
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=23.60 E-value=1.4e+02 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 026054 25 EVESFTLRVDDIFQKVDKLEERVNEIE 51 (244)
Q Consensus 25 ~~~~~~~~~~~~~~k~~~l~~~~~~~~ 51 (244)
|+..+|+++|+|..++-.|-.+.-.+.
T Consensus 1 ~l~~lR~~ID~ID~~ii~LL~~R~~~~ 27 (74)
T TIGR01808 1 EIDTLREEIDRLDAEILALVKRRAEIS 27 (74)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999998776664433
No 77
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=23.17 E-value=1.2e+02 Score=23.80 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=17.4
Q ss_pred HhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 026054 30 TLRVDDIFQKVDKLEERVNEIEQFYLN 56 (244)
Q Consensus 30 ~~~~~~~~~k~~~l~~~~~~~~~~~~s 56 (244)
++.|.++..+.+.+|+++..+|.+..|
T Consensus 83 ~~~l~~~~~~~~~~e~Rl~~mE~yVTS 109 (121)
T TIGR02978 83 RQALREVKREFRDLERRLRNMERYVTS 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445666666667777777777765544
No 78
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=21.88 E-value=2e+02 Score=18.73 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHH
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERV 47 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~ 47 (244)
+.++.|.+.|+++-.++..||.++
T Consensus 23 ~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 23 SALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888888888888887664
No 79
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.16 E-value=2e+02 Score=18.78 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHhHHHHHHHH
Q 026054 26 VESFTLRVDDIFQKVDKLEERV 47 (244)
Q Consensus 26 ~~~~~~~~~~~~~k~~~l~~~~ 47 (244)
++.||+++..+..++..|+...
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999998888554
No 80
>KOG3740 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=1.2e+02 Score=30.49 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q 026054 168 TDVRLVFKNAMKYNDERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 168 ~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
+|..+||.||++-|.+.-.-.....+|...|-+.+..
T Consensus 484 ~d~~i~cE~cvtSnqkkAlK~ehT~rLKrAfvKalqQ 520 (706)
T KOG3740|consen 484 ADAAIVCENCVTSNQKKALKVEHTNRLKRAFVKALQQ 520 (706)
T ss_pred cchHHHHHhhhhhcccccccccchHHHHHHHHHHHHh
Confidence 4789999999999998877777788888888877654
No 81
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=20.93 E-value=3.6e+02 Score=21.40 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCC
Q 026054 99 KRMEELIRQFGTILRNITQHKWA 121 (244)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~s 121 (244)
..+..|+..|..++..|..+...
T Consensus 77 ~~l~~LLd~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 77 AVLNGLLDDCFDLIEDLLERKGE 99 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34557999999999999988764
Done!