Query 026054
Match_columns 244
No_of_seqs 255 out of 1256
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 1.2E-30 4.2E-35 207.1 12.3 110 98-207 17-129 (130)
2 3g0l_A Hwalp4, bromodomain adj 100.0 2.3E-30 7.9E-35 201.8 12.5 103 103-207 13-115 (117)
3 3d7c_A General control of amin 100.0 3.6E-30 1.2E-34 199.3 12.7 102 102-205 6-107 (112)
4 3mb3_A PH-interacting protein; 100.0 1.1E-30 3.7E-35 208.5 8.6 109 102-212 20-129 (135)
5 3q2e_A Bromodomain and WD repe 100.0 4.7E-30 1.6E-34 201.8 11.1 108 103-212 10-118 (123)
6 3nxb_A CAT eye syndrome critic 100.0 4.8E-30 1.6E-34 199.8 11.0 101 102-204 15-115 (116)
7 2oss_A HUNK1 protein, bromodom 100.0 1.3E-29 4.4E-34 200.5 12.9 105 103-207 21-125 (127)
8 2i7k_A Bromodomain-containing 100.0 1.4E-29 4.9E-34 197.5 13.0 105 101-207 6-110 (117)
9 3jvl_A Bromodomain-containing 100.0 4.5E-30 1.5E-34 201.0 9.8 108 101-208 7-117 (120)
10 1e6i_A Transcriptional activat 100.0 7.1E-30 2.4E-34 200.3 10.6 103 104-209 14-116 (121)
11 3p1f_A CREB-binding protein; s 100.0 7.9E-30 2.7E-34 199.4 10.4 107 102-208 10-117 (119)
12 2yyn_A Transcription intermedi 100.0 2.6E-29 8.7E-34 200.7 13.5 105 103-210 20-126 (135)
13 2dat_A Possible global transcr 100.0 2.5E-29 8.4E-34 197.7 12.8 103 103-207 13-121 (123)
14 2d9e_A Peregrin; four-helix bu 100.0 2.9E-29 9.8E-34 196.9 13.0 102 103-206 7-108 (121)
15 4alg_A Bromodomain-containing 100.0 2.5E-29 8.6E-34 205.0 12.6 108 103-210 32-139 (154)
16 3mqm_A Probable histone-lysine 100.0 2.8E-29 9.6E-34 198.1 11.6 108 101-210 7-120 (126)
17 3fkm_X Signaling protein; brom 100.0 2.6E-29 8.8E-34 207.3 11.8 105 102-206 20-124 (166)
18 2grc_A Probable global transcr 100.0 2.9E-29 1E-33 198.9 11.1 104 103-208 11-121 (129)
19 3rcw_A Bromodomain-containing 100.0 2.7E-29 9.3E-34 200.5 10.7 104 100-205 10-113 (135)
20 3mb4_A Protein polybromo-1; PB 100.0 8.4E-29 2.9E-33 194.9 12.3 103 103-207 15-123 (124)
21 3iu5_A Protein polybromo-1; PB 100.0 6.7E-29 2.3E-33 193.3 11.6 103 103-207 5-113 (116)
22 3k2j_A Protein polybromo-1; PB 100.0 1.5E-28 5.1E-33 195.1 13.0 104 101-206 15-124 (130)
23 3hme_A Bromodomain-containing 100.0 9.1E-29 3.1E-33 194.5 11.4 100 103-204 13-112 (123)
24 3ljw_A Protein polybromo-1; al 100.0 1.7E-28 5.7E-33 192.2 12.6 101 103-205 8-114 (120)
25 3uv4_A Second bromodomain of h 100.0 1.9E-28 6.5E-33 200.5 11.3 108 103-212 29-137 (158)
26 3tlp_A Protein polybromo-1; PB 99.9 6.7E-28 2.3E-32 195.6 11.2 105 107-213 28-139 (150)
27 3dai_A ATPase family AAA domai 99.9 3E-27 1E-31 187.5 13.4 109 99-209 6-119 (130)
28 2ri7_A Nucleosome-remodeling f 99.9 2.3E-27 7.8E-32 196.5 11.3 102 103-206 72-173 (174)
29 3o36_A Transcription intermedi 99.9 6.9E-27 2.3E-31 195.5 12.1 102 103-207 81-184 (184)
30 3uv5_A Transcription initiatio 99.9 2E-25 6.9E-30 196.6 16.2 104 107-212 140-244 (265)
31 2dkw_A Hypothetical protein KI 99.9 1.3E-25 4.6E-30 178.3 12.7 105 100-211 9-118 (131)
32 3uv5_A Transcription initiatio 99.9 7.1E-26 2.4E-30 199.5 12.2 106 103-210 14-119 (265)
33 3u5n_A E3 ubiquitin-protein li 99.9 1.3E-25 4.4E-30 191.1 12.6 103 103-208 81-203 (207)
34 2ro1_A Transcription intermedi 99.9 1.4E-25 4.9E-30 188.4 9.1 98 105-209 78-180 (189)
35 3aad_A Transcription initiatio 99.9 6E-25 2.1E-29 196.1 9.7 102 102-205 46-147 (292)
36 3aad_A Transcription initiatio 99.9 2.1E-24 7.1E-29 192.6 12.9 102 108-211 174-276 (292)
37 2r0y_A Chromatin structure-rem 99.9 2.9E-24 9.8E-29 193.2 9.1 93 117-211 177-270 (311)
38 2r10_A Chromatin structure-rem 99.9 5.9E-24 2E-28 194.8 9.6 94 117-212 227-321 (361)
39 2r10_A Chromatin structure-rem 99.8 1.4E-21 4.8E-26 179.0 8.6 98 104-205 79-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 2.2E-21 7.5E-26 174.4 8.5 83 119-205 46-129 (311)
41 3iu6_A Protein polybromo-1; PB 99.8 1.3E-19 4.5E-24 145.3 13.0 99 104-208 8-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.7 1.1E-16 3.7E-21 133.4 9.2 97 102-211 74-170 (183)
43 2yy0_A C-MYC-binding protein; 73.3 6.3 0.00022 25.4 4.7 31 21-51 16-46 (53)
44 1txp_A HnRNP C, heterogeneous 39.3 28 0.00096 19.3 2.6 21 27-47 2-22 (28)
45 3twe_A Alpha4H; unknown functi 37.2 49 0.0017 17.7 3.4 22 26-47 3-24 (27)
46 1use_A VAsp, vasodilator-stimu 31.9 93 0.0032 19.3 4.6 30 21-50 4-34 (45)
47 3kxe_C Antitoxin protein PARD- 28.6 59 0.002 22.9 3.7 30 148-177 15-44 (88)
48 1jcd_A Major outer membrane li 26.1 1E+02 0.0035 19.6 4.1 26 24-49 4-29 (52)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=1.2e-30 Score=207.07 Aligned_cols=110 Identities=41% Similarity=0.759 Sum_probs=101.4
Q ss_pred HHhHHHHHHHHHHHHHHHHcCCC---CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 026054 98 EKRMEELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (244)
Q Consensus 98 ~~~~~~l~~~~~~il~~l~~~~~---s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf 174 (244)
.+++.+.++.|..||..|+.++. +|+|..||++...++||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 17 ~~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp --CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34455678899999999999874 899999999987779999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
.||++||+++|.++.+|..|+..|++.|+++..
T Consensus 97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998754
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=2.3e-30 Score=201.83 Aligned_cols=103 Identities=36% Similarity=0.679 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
..++.|..||..|..++.+++|..||+... +||||++|++||||+||++||.+|.|.++++|.+||+|||.||+.||+
T Consensus 13 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (117)
T 3g0l_A 13 KDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90 (117)
T ss_dssp THHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 357889999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
++|.++.+|..|++.|++.|++++.
T Consensus 91 ~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 91 DDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998864
No 3
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=3.6e-30 Score=199.32 Aligned_cols=102 Identities=30% Similarity=0.496 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
..|.+.|..|+..|.+++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 6 ~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN 83 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHC
Confidence 4788899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
+++|.++.+|..|+..|++.|+++
T Consensus 84 ~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 84 PPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999875
No 4
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.96 E-value=1.1e-30 Score=208.55 Aligned_cols=109 Identities=37% Similarity=0.582 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
..+.+.|..||..|..++.+++|..||+... +||||++|++||||+||++||.+|.|.++++|.+||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp STHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3688899999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 182 DE-RSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 182 ~~-~s~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
++ +|.+|.+|..|+..|++.|..+++.+...
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 99999999999999999999998876544
No 5
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.96 E-value=4.7e-30 Score=201.83 Aligned_cols=108 Identities=35% Similarity=0.565 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|+.||+|||.||+.||+
T Consensus 10 ~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87 (123)
T ss_dssp CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 578899999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 183 E-RSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 183 ~-~s~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
+ +|.++.+|..|+..|++.|+++++.+...
T Consensus 88 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 118 (123)
T 3q2e_A 88 NKRSKIYSMTLRLSALFEEKMKKISSDFKIG 118 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 99999999999999999999998876544
No 6
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.96 E-value=4.8e-30 Score=199.76 Aligned_cols=101 Identities=30% Similarity=0.582 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
.++.+.|..+|..|+.++.+++|..||++.. +||||++|++||||+||++||++|.|.++++|++||+|||.||++||
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 92 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYN 92 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
+++|.++.+|..|+..|++.|.+
T Consensus 93 ~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 93 GESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 7
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.96 E-value=1.3e-29 Score=200.47 Aligned_cols=105 Identities=38% Similarity=0.644 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
++...|..||..|++++.+|+|..||+....++||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+
T Consensus 21 ~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 100 (127)
T 2oss_A 21 QLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK 100 (127)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45667888999999999999999999986445999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
++|.++.+|..|++.|++.|+++..
T Consensus 101 ~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 101 PGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999988754
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=197.50 Aligned_cols=105 Identities=26% Similarity=0.327 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 026054 101 MEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~Y 180 (244)
...+.+.|..||..|++++.+++|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
|+++|.++.+|..|++.|++.+..++-
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~~~ 110 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQERL 110 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653
No 9
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=4.5e-30 Score=201.04 Aligned_cols=108 Identities=41% Similarity=0.766 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHcCCC---CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 101 MEELIRQFGTILRNITQHKW---AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~---s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
+.+.++.|..||..|..++. +|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||
T Consensus 7 ~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 86 (120)
T 3jvl_A 7 ISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNC 86 (120)
T ss_dssp SCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 34678899999999999887 999999999988789999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
++||+++|.++.+|..|+..|++.|.++...
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 87 YKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999988754
No 10
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.96 E-value=7.1e-30 Score=200.33 Aligned_cols=103 Identities=34% Similarity=0.627 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q 026054 104 LIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDE 183 (244)
Q Consensus 104 l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~ 183 (244)
.+..|..||..|++++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCc
Q 026054 184 RSDVHVMAKTLLAKFEEKWLQLLPKV 209 (244)
Q Consensus 184 ~s~v~~~A~~L~~~fe~~~~~l~~~~ 209 (244)
+|.++.+|..|++.|++.|+.+ |.+
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~-p~~ 116 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEI-PEY 116 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHc-ccc
Confidence 9999999999999999999876 444
No 11
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=7.9e-30 Score=199.37 Aligned_cols=107 Identities=33% Similarity=0.558 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHc-CCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q 026054 102 EELIRQFGTILRNITQ-HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~-~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~Y 180 (244)
.++.+.|..+|..|.. ++.+++|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||+||++|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3788899999999988 679999999999884449999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
|+++|.++.+|..|+..|++.|..++..
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987643
No 12
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=200.71 Aligned_cols=105 Identities=31% Similarity=0.522 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhh
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~--~~Y~s~~eF~~Dv~LIf~Na~~Y 180 (244)
...+.|..||..|++++.+++|..||+. . +||||++|++||||+||++||++ +.|.++.+|.+||+|||.||++|
T Consensus 20 ~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~y 96 (135)
T 2yyn_A 20 IDKRKCERLLLFLYCHEMSLAFQDPVPL-T--VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 96 (135)
T ss_dssp HHHHHHHHHHHHHHTSGGGGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccchhhcCCCcc-c--CCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999997 4 99999999999999999999998 58999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCCCcc
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l~~~~~ 210 (244)
|+++|.++.+|..|+..|++.|+++++...
T Consensus 97 N~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 97 NEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999998753
No 13
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.96 E-value=2.5e-29 Score=197.75 Aligned_cols=103 Identities=28% Similarity=0.437 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 026054 103 ELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~N 176 (244)
.+.+.|..||+.|++++ .+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 13 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 13 KLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp HHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 67888999999999986 5899999999887 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
|++||+++|.++.+|..|++.|++.++++.+
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999988754
No 14
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=196.87 Aligned_cols=102 Identities=26% Similarity=0.365 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.+...|..||..|++++.+++|..||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 7 pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 466789999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
++|.++.+|..|++.|+..|.++.
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987753
No 15
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.96 E-value=2.5e-29 Score=204.96 Aligned_cols=108 Identities=34% Similarity=0.586 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
++...|..||..|++++.+|+|..||++..+++||||++|++||||+||++||+++.|.++++|++||+|||.||++||+
T Consensus 32 ~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~ 111 (154)
T 4alg_A 32 QLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNK 111 (154)
T ss_dssp HHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 56667888999999999999999999998666999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCcc
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~~~~~ 210 (244)
++|.++.+|..|++.|++.|+++.+...
T Consensus 112 ~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 112 PTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 9999999999999999999999876643
No 16
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=198.14 Aligned_cols=108 Identities=30% Similarity=0.361 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 026054 101 MEELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (244)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf 174 (244)
...+.+.|..+++.|..+. .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3467778888888888765 4999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhCCCcc
Q 026054 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (244)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~~ 210 (244)
.||+.||+++|.++.+|..|++.|++.|.++.+.+.
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988766654
No 17
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=2.6e-29 Score=207.25 Aligned_cols=105 Identities=27% Similarity=0.436 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
.++.+.|..||..|++++.+++|..||++....+||||++|++||||+||++||.++.|.++.+|++||+|||.||++||
T Consensus 20 ~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN 99 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYN 99 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 37888999999999999999999999998755699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
+++|.++.+|..|++.|++.|.++.
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 100 TSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998865
No 18
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.96 E-value=2.9e-29 Score=198.89 Aligned_cols=104 Identities=27% Similarity=0.427 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCC-------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 026054 103 ELIRQFGTILRNITQHK-------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFK 175 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~-------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~ 175 (244)
.+.+.|..||..|++++ .+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 11 ~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 88 (129)
T 2grc_A 11 NLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ 88 (129)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 67889999999999875 5899999999888 99999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 176 NAMKYNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 176 Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
||++||+++|.++.+|..|+..|++.|+.+...
T Consensus 89 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 89 NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999987654
No 19
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=200.45 Aligned_cols=104 Identities=33% Similarity=0.471 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
++..+...|..+|+.|++++.+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 87 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMK 87 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344678899999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
||+++|.+|.+|..|.+.|...|+..
T Consensus 88 yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 88 YNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 20
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.96 E-value=8.4e-29 Score=194.94 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHc------CCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 026054 103 ELIRQFGTILRNITQ------HKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (244)
Q Consensus 103 ~l~~~~~~il~~l~~------~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~N 176 (244)
.+.+.|..|+..|.. ++.+++|..||+... +||||++|++||||+||++||.++.|.++.+|.+||+|||.|
T Consensus 15 ~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (124)
T 3mb4_A 15 PMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNN 92 (124)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467788999999988 456799999999988 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
|++||+++|.++.+|..|++.|++.|+++..
T Consensus 93 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 93 ACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998753
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=193.30 Aligned_cols=103 Identities=23% Similarity=0.390 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 026054 103 ELIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~N 176 (244)
+.++.|..|+..|.+++ .+++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35778999999999884 4999999999988 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
|++||+++|.++.+|..|++.|++.+++++.
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998865
No 22
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=195.09 Aligned_cols=104 Identities=25% Similarity=0.380 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHcCCC------CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 026054 101 MEELIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVF 174 (244)
Q Consensus 101 ~~~l~~~~~~il~~l~~~~~------s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf 174 (244)
...+..+|..+++.|....+ +++|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34678888888888887654 999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 175 KNAMKYNDERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 175 ~Na~~YN~~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
.||++||+++|.++.+|..|++.|++.|+++.
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 124 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELA 124 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874
No 23
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.96 E-value=9.1e-29 Score=194.54 Aligned_cols=100 Identities=29% Similarity=0.369 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.+...|..|+..|..++.+++|..||++.. +||||++|++||||+||++||.+|.|.++++|.+||+|||.||+.||+
T Consensus 13 p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 90 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNR 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 567789999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQ 204 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~ 204 (244)
++|.++.+|..|.+.|.+.|.+
T Consensus 91 ~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 91 PDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp TTSHHHHHHHHHHHHHHHHTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 24
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.96 E-value=1.7e-28 Score=192.18 Aligned_cols=101 Identities=26% Similarity=0.384 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHcCCC------CCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 026054 103 ELIRQFGTILRNITQHKW------AWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKN 176 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~------s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~N 176 (244)
.+.+.|..++..|..+++ +++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.|
T Consensus 8 ~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 8 YLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 567788899999988776 999999999988 999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 177 AMKYNDERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 177 a~~YN~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
|+.||+++|.++.+|..|++.|++.|+++
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i 114 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEI 114 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.95 E-value=1.9e-28 Score=200.52 Aligned_cols=108 Identities=27% Similarity=0.467 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHH-HHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 103 ELIRQFGTILRN-ITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 103 ~l~~~~~~il~~-l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
.+...|..|+.. |+.++.+|||..||++.. +||||++|++||||+||++||.++.|.++.+|++||+|||.||++||
T Consensus 29 ~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN 106 (158)
T 3uv4_A 29 AFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYN 106 (158)
T ss_dssp HHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 344455566554 777899999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
+++|.++.+|..|...|...|.++.+.+...
T Consensus 107 ~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~l 137 (158)
T 3uv4_A 107 GPESQYTKTAQEIVNVCYQTLTEYDEHLTQL 137 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987665543
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.95 E-value=6.7e-28 Score=195.61 Aligned_cols=105 Identities=27% Similarity=0.440 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcC-------CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 107 QFGTILRNITQH-------KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 107 ~~~~il~~l~~~-------~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
+|..|+..|.+. +.+++|..||+... +||||++|++||||+||++||+++.|.++.+|++||+|||.||++
T Consensus 28 ~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 105 (150)
T 3tlp_A 28 RMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARH 105 (150)
T ss_dssp HHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455555555544 34999999999988 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhCCCccHHH
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPKVTEEE 213 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~~~~~ 213 (244)
||+++|.+|.+|..|++.|++.|+++.+...++.
T Consensus 106 yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~ 139 (150)
T 3tlp_A 106 YNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDD 139 (150)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhh
Confidence 9999999999999999999999999998876554
No 27
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.95 E-value=3e-27 Score=187.50 Aligned_cols=109 Identities=25% Similarity=0.367 Sum_probs=98.7
Q ss_pred HhHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q 026054 99 KRMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAM 178 (244)
Q Consensus 99 ~~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~ 178 (244)
..+.++...|..++..|..++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|++||+|||.||+
T Consensus 6 ~~l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (130)
T 3dai_A 6 DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNAL 83 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455778889999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHH----HHHHHHHHHHHHHHHH-hhCCCc
Q 026054 179 KYNDERSDV----HVMAKTLLAKFEEKWL-QLLPKV 209 (244)
Q Consensus 179 ~YN~~~s~v----~~~A~~L~~~fe~~~~-~l~~~~ 209 (244)
+||+++|++ +.+|..|++.+...++ .+.+.+
T Consensus 84 ~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 84 EYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp HHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999876 6888999999988886 444443
No 28
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=2.3e-27 Score=196.54 Aligned_cols=102 Identities=31% Similarity=0.578 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.....|..||..|..++.+++|..||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||++||+
T Consensus 72 ~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~ 149 (174)
T 2ri7_A 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNP 149 (174)
T ss_dssp HHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456688999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhC
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLL 206 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~ 206 (244)
++|.++.+|..|++.|++.|+.+.
T Consensus 150 ~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 150 SDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987763
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.94 E-value=6.9e-27 Score=195.50 Aligned_cols=102 Identities=32% Similarity=0.544 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhh
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA--KEYKNVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~--~~Y~s~~eF~~Dv~LIf~Na~~Y 180 (244)
...+.|..||..|+.++.+++|..||+.. +||||++|++||||+||++||++ +.|.++.+|++||+|||.||++|
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~y 157 (184)
T 3o36_A 81 IDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEF 157 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999864 89999999999999999999998 78999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhCC
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQLLP 207 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l~~ 207 (244)
|+++|.++.+|..|+..|++.|++++|
T Consensus 158 N~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 158 NEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999987
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.93 E-value=2e-25 Score=196.59 Aligned_cols=104 Identities=28% Similarity=0.494 Sum_probs=95.3
Q ss_pred HHHHHHH-HHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCC
Q 026054 107 QFGTILR-NITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERS 185 (244)
Q Consensus 107 ~~~~il~-~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s 185 (244)
.|..++. .++.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||++||+++|
T Consensus 140 il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s 217 (265)
T 3uv5_A 140 ILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 217 (265)
T ss_dssp HHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4555554 4788999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccHH
Q 026054 186 DVHVMAKTLLAKFEEKWLQLLPKVTEE 212 (244)
Q Consensus 186 ~v~~~A~~L~~~fe~~~~~l~~~~~~~ 212 (244)
.++.+|..|...|...|.++...+...
T Consensus 218 ~~~~~A~~l~~~~~~~~~~~~~~~~~~ 244 (265)
T 3uv5_A 218 QYTKTAQEIVNVCYQTLTEYDEHLTQL 244 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665443
No 31
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=178.26 Aligned_cols=105 Identities=26% Similarity=0.449 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q 026054 100 RMEELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 100 ~~~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
.+.+|...|..|+..|..++.+++|..| +||||++|++||||+||++||.++.|.++.+|.+||+|||.||++
T Consensus 9 ~~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 9 TLRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4457778899999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred hCCCCCH----HHHHHHHHHHHHHHHHH-hhCCCccH
Q 026054 180 YNDERSD----VHVMAKTLLAKFEEKWL-QLLPKVTE 211 (244)
Q Consensus 180 YN~~~s~----v~~~A~~L~~~fe~~~~-~l~~~~~~ 211 (244)
||+++|+ ++.+|..|++.|...++ .+.+.+..
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~~f~~ 118 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNK 118 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSCTTTHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 57999999999999995 44455433
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.93 E-value=7.1e-26 Score=199.49 Aligned_cols=106 Identities=25% Similarity=0.513 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYND 182 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~ 182 (244)
.|...|..||..|.+++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|++||+|||+||++||+
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 91 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 91 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCC
Confidence 677889999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCcc
Q 026054 183 ERSDVHVMAKTLLAKFEEKWLQLLPKVT 210 (244)
Q Consensus 183 ~~s~v~~~A~~L~~~fe~~~~~l~~~~~ 210 (244)
++|.++.+|..|...|++.|+++.+.+.
T Consensus 92 ~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 119 (265)
T 3uv5_A 92 PKHSLTQISQSMLDLCDEKLKEKEDKLA 119 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999988765543
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.93 E-value=1.3e-25 Score=191.14 Aligned_cols=103 Identities=31% Similarity=0.571 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhh
Q 026054 103 ELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEA---KEYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 103 ~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~---~~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
...+.|..||..|+.++.+++|..||+. . +||||++|++||||+||++||++ +.|.++.+|++||+|||.||++
T Consensus 81 ~~~~~c~~il~~l~~~~~s~~F~~Pv~~-~--~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~ 157 (207)
T 3u5n_A 81 VDQRKCERLLLYLYCHELSIEFQEPVPA-S--IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCER 157 (207)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGSSCCCT-T--STTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhhhhccCCh-h--hccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999987 4 99999999999999999999997 7999999999999999999999
Q ss_pred hCC-----------------CCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 180 YND-----------------ERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 180 YN~-----------------~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
||+ +++.++.+|..|+..|+..|++++|.
T Consensus 158 yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 158 FNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 99999999999999999999999986
No 34
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=188.45 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccC--CCCChHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHhh
Q 026054 105 IRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVID--KPMDFSTIKKQMEAK---EYKNVREICTDVRLVFKNAMK 179 (244)
Q Consensus 105 ~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk--~PMdL~tI~~kL~~~---~Y~s~~eF~~Dv~LIf~Na~~ 179 (244)
++.|..||..|+.|+.+|||..||+ |+||.+|+ +||||+||++||.++ .|.++++|++||+|||+||++
T Consensus 78 ~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~ 151 (189)
T 2ro1_A 78 QRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNK 151 (189)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999997 67999998 899999999999999 999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhCCCc
Q 026054 180 YNDERSDVHVMAKTLLAKFEEKWLQLLPKV 209 (244)
Q Consensus 180 YN~~~s~v~~~A~~L~~~fe~~~~~l~~~~ 209 (244)
|| +++.++.+|..|++.|++.|+++++..
T Consensus 152 yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 152 LT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99 588899999999999999999998763
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=6e-25 Score=196.08 Aligned_cols=102 Identities=25% Similarity=0.520 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
..+...|..||..|+.++.+++|..||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||+||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 3566789999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
+++|.++.+|..|.+.|++.|+.+
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred CCchHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999887664
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=192.58 Aligned_cols=102 Identities=28% Similarity=0.525 Sum_probs=93.2
Q ss_pred HHHHH-HHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCH
Q 026054 108 FGTIL-RNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSD 186 (244)
Q Consensus 108 ~~~il-~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~ 186 (244)
|..++ ..|+.++.+++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44444 34788999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccH
Q 026054 187 VHVMAKTLLAKFEEKWLQLLPKVTE 211 (244)
Q Consensus 187 v~~~A~~L~~~fe~~~~~l~~~~~~ 211 (244)
+|.+|..|+..|+..+..+.+.+..
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~~ 276 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLTQ 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887665543
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.90 E-value=2.9e-24 Score=193.16 Aligned_cols=93 Identities=31% Similarity=0.520 Sum_probs=87.0
Q ss_pred cCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026054 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (244)
Q Consensus 117 ~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~ 196 (244)
.++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||+++|.++.+|..|+.
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3568999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-CCCccH
Q 026054 197 KFEEKWLQL-LPKVTE 211 (244)
Q Consensus 197 ~fe~~~~~l-~~~~~~ 211 (244)
.|++.|++. +|.+..
T Consensus 255 ~f~~~~~~~~~p~~~~ 270 (311)
T 2r0y_A 255 YFNYLIQKEFFPELQD 270 (311)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHhcCCcchh
Confidence 999999884 555543
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.90 E-value=5.9e-24 Score=194.75 Aligned_cols=94 Identities=31% Similarity=0.522 Sum_probs=87.6
Q ss_pred cCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026054 117 QHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLA 196 (244)
Q Consensus 117 ~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~ 196 (244)
.++.+|+|..||+... +||||++|++||||+||++||.++.|.++.+|.+||+|||.||++||+++|.||.+|..|+.
T Consensus 227 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 304 (361)
T 2r10_A 227 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 304 (361)
T ss_dssp SSCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hCCCccHH
Q 026054 197 KFEEKWLQ-LLPKVTEE 212 (244)
Q Consensus 197 ~fe~~~~~-l~~~~~~~ 212 (244)
.|+..|++ ++|.+...
T Consensus 305 ~f~~~~~~~~~p~~~~~ 321 (361)
T 2r10_A 305 YFNYLIQKEFFPELQDL 321 (361)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhcCCcchhh
Confidence 99999987 45665443
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.85 E-value=1.4e-21 Score=179.00 Aligned_cols=98 Identities=23% Similarity=0.252 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcC--CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhh
Q 026054 104 LIRQFGTILRNITQH--KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKY 180 (244)
Q Consensus 104 l~~~~~~il~~l~~~--~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~-s~~eF~~Dv~LIf~Na~~Y 180 (244)
+...|..+|+.+... ..+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|++||+|||.||++|
T Consensus 79 ~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 79 FNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 344677788877654 35899999999998 999999999999999999998 5555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q 026054 181 NDERSDVHVMAKTLLAKFEEKWLQL 205 (244)
Q Consensus 181 N~~~s~v~~~A~~L~~~fe~~~~~l 205 (244)
|+++|.|+.+|..|++.|+..|.+.
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999765
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.84 E-value=2.2e-21 Score=174.37 Aligned_cols=83 Identities=25% Similarity=0.277 Sum_probs=78.1
Q ss_pred CCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026054 119 KWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYK-NVREICTDVRLVFKNAMKYNDERSDVHVMAKTLLAK 197 (244)
Q Consensus 119 ~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~-s~~eF~~Dv~LIf~Na~~YN~~~s~v~~~A~~L~~~ 197 (244)
..+++|+.||+... +||||++|++||||+||++|| +.|. ++.+|.+||+|||.||++||+++|.|+.+|..|++.
T Consensus 46 ~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~ 121 (311)
T 2r0y_A 46 DIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVML 121 (311)
T ss_dssp HHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred chhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 36899999999998 999999999999999999999 5565 899999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 026054 198 FEEKWLQL 205 (244)
Q Consensus 198 fe~~~~~l 205 (244)
|++.|.+.
T Consensus 122 ~~~~~~k~ 129 (311)
T 2r0y_A 122 IEFEVLKA 129 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99998765
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=145.34 Aligned_cols=99 Identities=16% Similarity=0.252 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCC------CCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 104 LIRQFGTILRNITQHK------WAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 104 l~~~~~~il~~l~~~~------~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
+...+..|+..|+++. .+.+|+..|+.. |+||. +.||+|.+|++||.+|.|+++++|..||.+||.||
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NA 81 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERA 81 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4556788888888875 378999998876 68998 99999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 026054 178 MKYNDERSDVHVMAKTLLAKFEEKWLQLLPK 208 (244)
Q Consensus 178 ~~YN~~~s~v~~~A~~L~~~fe~~~~~l~~~ 208 (244)
++||.+||.||.+|..|+.+|.+.+.++.+.
T Consensus 82 r~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 82 RRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999887654
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.67 E-value=1.1e-16 Score=133.44 Aligned_cols=97 Identities=14% Similarity=0.303 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcCcCCcCCCCCCchhhccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhC
Q 026054 102 EELIRQFGTILRNITQHKWAWPFMQPVDVKGLGLDDYYEVIDKPMDFSTIKKQMEAKEYKNVREICTDVRLVFKNAMKYN 181 (244)
Q Consensus 102 ~~l~~~~~~il~~l~~~~~s~~F~~pvd~~~~~~pdYy~iIk~PMdL~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na~~YN 181 (244)
.++.+.+..||..|..++.++||+.. .++.||||.+|++||+.|.|.|+.+|+.||.|||.||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 36777899999999999999998762 25999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhCCCccH
Q 026054 182 DERSDVHVMAKTLLAKFEEKWLQLLPKVTE 211 (244)
Q Consensus 182 ~~~s~v~~~A~~L~~~fe~~~~~l~~~~~~ 211 (244)
.+++.+..++..|+.+|++.+++++|-+..
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~ 170 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFSV 170 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSCG
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999999997654
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=73.26 E-value=6.3 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=26.5
Q ss_pred CchHHHHHHHhHHHHHHHhHHHHHHHHHHHH
Q 026054 21 SDVAEVESFTLRVDDIFQKVDKLEERVNEIE 51 (244)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~ 51 (244)
...+|++.|+.++++++.++..|..++.+..
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999999999999999998886654
No 44
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.34 E-value=28 Score=19.33 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=14.6
Q ss_pred HHHHhHHHHHHHhHHHHHHHH
Q 026054 27 ESFTLRVDDIFQKVDKLEERV 47 (244)
Q Consensus 27 ~~~~~~~~~~~~k~~~l~~~~ 47 (244)
..++.+|..|..|++.|...+
T Consensus 2 Q~IkkELtQIK~kvDsLLe~L 22 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENL 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777776555
No 45
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.24 E-value=49 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.456 Sum_probs=16.3
Q ss_pred HHHHHhHHHHHHHhHHHHHHHH
Q 026054 26 VESFTLRVDDIFQKVDKLEERV 47 (244)
Q Consensus 26 ~~~~~~~~~~~~~k~~~l~~~~ 47 (244)
+++|-.+|+++.+.++||..++
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888887665
No 46
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=31.87 E-value=93 Score=19.27 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=23.6
Q ss_pred CchHHHHHHHhHH-HHHHHhHHHHHHHHHHH
Q 026054 21 SDVAEVESFTLRV-DDIFQKVDKLEERVNEI 50 (244)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~k~~~l~~~~~~~ 50 (244)
.+..|++.||+.+ .|++..+.|..+.|-+.
T Consensus 4 ~~~~dle~~KqEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 4 SDYSDLQRVKQELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558999999975 58888899988887543
No 47
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=28.65 E-value=59 Score=22.92 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 026054 148 FSTIKKQMEAKEYKNVREICTDVRLVFKNA 177 (244)
Q Consensus 148 L~tI~~kL~~~~Y~s~~eF~~Dv~LIf~Na 177 (244)
..-|...+..|.|.|..+++.|.-..+..-
T Consensus 15 ~~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999999999977666553
No 48
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.08 E-value=1e+02 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHH
Q 026054 24 AEVESFTLRVDDIFQKVDKLEERVNE 49 (244)
Q Consensus 24 ~~~~~~~~~~~~~~~k~~~l~~~~~~ 49 (244)
+.++.|-.+|+++-.||+.|...++.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888876644
Done!