BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026056
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/223 (54%), Positives = 149/223 (66%), Gaps = 10/223 (4%)
Query: 27 ATFTMVNRCSYAVWPGIL-GNAK--LDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFD 83
A T N C VWPG L G+ K L TGFEL +SRSV P WSGRFWGRT C+ D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 84 PTTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFT-TGSGTQDFYDVSLVDGYNLPMIVE 142
G+ +C T DCGS Q+ CNG A PPATL E T +G QD+YDVSLVDG+NLPM V
Sbjct: 61 -AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVA 119
Query: 143 PIGGSGTCLSTGCVTDLNQRCPAELRDQSGEG----CKSACEAFGNPEYCCSGAYATPST 198
P GG+G C + C ++N+ CPA L+ ++ +G CKSAC AFG+ +YCC+ TP T
Sbjct: 120 PQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPET 179
Query: 199 CKPSVYSEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCP 240
C P+ YSE+F+ CP++YSYAYDD STFTC+G DY ITFCP
Sbjct: 180 CPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 142/223 (63%), Gaps = 10/223 (4%)
Query: 27 ATFTMVNRCSYAVWPGIL---GNAKLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFD 83
AT + N C Y VWPG L +L +TGFEL +S + P W+GRFW RTGC+ D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 84 PTTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTT-GSGTQDFYDVSLVDGYNLPMIVE 142
+G+ C T DC S Q+ CNG A PPATLAEF G QDFYDVSLVDG+NLPM V
Sbjct: 61 -ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVT 119
Query: 143 PIGGSGTCLSTGCVTDLNQRCPAELRDQSGEG----CKSACEAFGNPEYCCSGAYATPST 198
P GG+G C + C ++N CP+EL+ + +G C SAC FG P+YCC+ TP T
Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 199 CKPSVYSEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCP 240
C P+ YSE+F +ACP +YSYAYDD TFTC G +Y ITFCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 126/217 (58%), Gaps = 14/217 (6%)
Query: 27 ATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDPT 85
A FT+VN+C + VW + G +L G S + P T + R W RTGC FD
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGG----GRQLNRGESWRITAPAGTTAARIWARTGCKFD-A 55
Query: 86 TGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGS-GTQDFYDVSLVDGYNLPMIVEPI 144
+G+GSC TGDCG ++C G + P TLAE+ DF+D+SL+DG+N+PM P
Sbjct: 56 SGRGSCRTGDCGG-VLQCTGY-GRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPD 113
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
GGSG C D+N RCPAELR Q G C +AC F EYCC G+ A + C P+ Y
Sbjct: 114 GGSGCSRGPRCAVDVNARCPAELR-QDGV-CNNACPVFKKDEYCCVGSAA--NDCHPTNY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTC-TGADYTITFCP 240
S FK CP +YSY DDATSTFTC G +Y + FCP
Sbjct: 170 SRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 121/217 (55%), Gaps = 20/217 (9%)
Query: 27 ATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDPT 85
ATF +VNRCSY VW A + G +L G S ++ V T GR WGRTGC+FD
Sbjct: 1 ATFEIVNRCSYTVWA-----AAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFD-G 54
Query: 86 TGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGS-GTQDFYDVSLVDGYNLPMIVEPI 144
+G+G C TGDCG + C PP TLAEF DF+D+SLVDG+N+PM P
Sbjct: 55 SGRGRCQTGDCGG-VLSCTAY-GNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPT 112
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
SG C C D+N +CP L+ + GC + C F +YCC+ C P+ Y
Sbjct: 113 --SGGCRGIRCAADINGQCPGALK--APGGCNNPCTVFKTDQYCCNSG-----ACSPTDY 163
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCP 240
S+ FK CP +YSY DD T+TFTC G +Y + FCP
Sbjct: 164 SQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 125/221 (56%), Gaps = 30/221 (13%)
Query: 27 ATFTMVNRCSYAVW----PGILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCT 81
ATF ++N+C+Y VW PG G +LDS G S ++ V P T + R WGRT CT
Sbjct: 1 ATFDILNKCTYTVWAAASPG--GGRRLDS-------GQSWTITVNPGTTNARIWGRTSCT 51
Query: 82 FDPTTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGS-GTQDFYDVSLVDGYNLPMI 140
FD G+G C TGDC + +EC G PP TLAEF D+ D+SLVDG+N+PM
Sbjct: 52 FD-ANGRGKCETGDC-NGLLECQGY-GSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMD 108
Query: 141 VEPIGGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCK 200
C C D+N +CP+EL+ + GC + C F EYCC+ P +C
Sbjct: 109 FS------GCRGIQCSVDINGQCPSELK--APGGCNNPCTVFKTNEYCCTDG---PGSCG 157
Query: 201 PSVYSEMFKSACPRSYSYAYDDATSTFTC-TGADYTITFCP 240
P+ YS+ FK CP +YSY DD TS FTC +G +Y +TFCP
Sbjct: 158 PTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 123/219 (56%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G+G C TGDCG ++C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGRGICRTGDCGG-LLQCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+ Y
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLK-APGGGCNDACTVFQTSEYCC-----TTGKCGPTEY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 150 bits (378), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 121/219 (55%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+ Y
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGG-GCNDACTVFQTSEYCC-----TTGKCGPTEY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 121/219 (55%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+ Y
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLK-APGGGCNDACTVFQTSEYCC-----TTGKCGPTEY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 121/219 (55%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+ Y
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLK-APGGGCNDACTVFQTSEYCC-----TTGKCGPTEY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 121/218 (55%), Gaps = 15/218 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+ Y
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGG-GCNDACTVFQTSEYCC-----TTGKCGPTEY 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPS 241
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPT 206
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 120/219 (54%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCSY VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D+ D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGG-GCNDACTVFQTSEYCC-----TTGKCGPTEX 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 144 bits (362), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 118/222 (53%), Gaps = 25/222 (11%)
Query: 27 ATFTMVNRCSYAVWPG---ILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTF 82
AT + N C Y VW I G +LD G + + P T R WGRT C F
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLDR-------GQTWVINAPRGTKMARVWGRTNCNF 53
Query: 83 DPTTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGT-QDFYDVSLVDGYNLPMIV 141
+ G+G+C TGDCG ++C G KPP TLAE+ + DF+D+SLVDG+N+PM
Sbjct: 54 N-AAGRGTCQTGDCGG-VLQCTGW-GKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTF 110
Query: 142 EPIGGSG-TCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCK 200
P SG C + C ++N CP ELR G C + C FG +YCC T C
Sbjct: 111 APTNPSGGKCHAIHCTANINGECPRELRVPGG--CNNPCTTFGGQQYCC-----TQGPCG 163
Query: 201 PSVYSEMFKSACPRSYSYAYDDATSTFTCTGA--DYTITFCP 240
P+ +S+ FK CP +YSY DD TSTFTC G +Y + FCP
Sbjct: 164 PTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 118/219 (53%), Gaps = 15/219 (6%)
Query: 27 ATFTMVNRCSYAVWPGI-LGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDP 84
ATF +VNRCS VW G+A LD+ G +L G S ++ V P T G+ W RT C FD
Sbjct: 1 ATFEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD- 59
Query: 85 TTGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPI 144
+G G C TGDCG + C +PP TLAEF+ +D D+S + G+N+PM P
Sbjct: 60 DSGSGICKTGDCGG-LLRCKRF-GRPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFSPT 117
Query: 145 GGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
+ C C D+ +CPA+L+ G GC AC F EYCC T C P+
Sbjct: 118 --TRGCRGVRCAADIVGQCPAKLKAPGG-GCNDACTVFQTSEYCC-----TTGKCGPTEX 169
Query: 205 SEMFKSACPRSYSYAYDDATSTFTCTGA-DYTITFCPSV 242
S FK CP ++SY D T T TC G+ +Y +TFCP+
Sbjct: 170 SRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFCPTA 207
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 110/219 (50%), Gaps = 19/219 (8%)
Query: 27 ATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDPT 85
F + N C Y VW A G L G S PP T R WGRT C FD
Sbjct: 2 GVFEVHNNCPYTVW----AAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFD-G 56
Query: 86 TGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQ-DFYDVSLVDGYNLPMIVEPI 144
G+G C TGDCG +EC G KPP TLAE+ + DF+D+S++DG+N+PM P
Sbjct: 57 AGRGWCQTGDCGG-VLECKGW-GKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPT 114
Query: 145 G-GSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSV 203
G G C C ++N CP LR G C + C FG +YCC T C P+
Sbjct: 115 KPGPGKCHGIQCTANINGECPGSLRVPGG--CNNPCTTFGGQQYCC-----TQGPCGPTE 167
Query: 204 YSEMFKSACPRSYSYAYDDATSTFTCTG--ADYTITFCP 240
S FK CP +YSY DD TSTFTCT DY + FCP
Sbjct: 168 LSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 116/220 (52%), Gaps = 19/220 (8%)
Query: 27 ATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPP-TWSGRFWGRTGCTFDPT 85
AT + N C Y VW + G L G + + P T R WGRTGC F+
Sbjct: 1 ATIEVRNNCPYTVWAA----STPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFN-A 55
Query: 86 TGQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQ-DFYDVSLVDGYNLPMIVEPI 144
G+G+C TGDCG ++C G KPP TLAE+ + DF+D+SLVDG+N+PM P
Sbjct: 56 AGRGTCQTGDCGG-VLQCTGW-GKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPT 113
Query: 145 GGSG-TCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSV 203
SG C + C ++N CP L+ G C + C FG +YCC T C P+
Sbjct: 114 KPSGGKCHAIHCTANINGECPRALKVPGG--CNNPCTTFGGQQYCC-----TQGPCGPTE 166
Query: 204 YSEMFKSACPRSYSYAYDDATSTFTCTGA--DYTITFCPS 241
S+ FK CP +YSY DD TSTFTC G +Y + FCP+
Sbjct: 167 LSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCPN 206
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 27 ATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFDPTT 86
A T+ NRC + VWP + G EL PG+S S+ P S WGRTGC+FD
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFD-RA 59
Query: 87 GQGSCTTGDCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVE 142
G+G C TGDCG + + C G A P T+AE + G + S + G+N+PM ++
Sbjct: 60 GKGRCQTGDCGGSSLTCGGNPAV-PTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLK 114
>pdb|3K2E|A Chain A, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K2E|B Chain B, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K31|A Chain A, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
pdb|3K31|B Chain B, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
Length = 296
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 95 DCGSNQIECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPM----IVEPIGGSGTC 150
D G QI N ++A P TLA SG DF+ + + YN P+ ++ +GG+
Sbjct: 199 DLGKQQIRVNAISAGPVRTLAS----SGISDFHYILTWNKYNSPLRRNTTLDDVGGAALY 254
Query: 151 L 151
L
Sbjct: 255 L 255
>pdb|1PT5|A Chain A, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT5|B Chain B, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT7|A Chain A, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT7|B Chain B, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT8|A Chain A, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
pdb|1PT8|B Chain B, Crystal Structure Of The Yfdw Gene Product Of E. Coli, In
Complex With Oxalate And Acetyl-Coa
Length = 437
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 154 GCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVY 204
G TD N +++Q+ E + C+A G PE+ AY+T +P ++
Sbjct: 280 GWETDPNAYIYFTIQEQNWE---NTCKAIGKPEWITDPAYSTAHARQPHIF 327
>pdb|1Q6Y|A Chain A, Hypothetical Protein Yfdw From E. Coli Bound To Coenzyme A
Length = 428
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 154 GCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVYS 205
G TD N +++Q+ E + C+A G PE+ AY+T +P ++
Sbjct: 261 GWETDPNAYIYFTIQEQNWE---NTCKAIGKPEWITDPAYSTAHARQPHIFD 309
>pdb|1Q7E|A Chain A, Crystal Structure Of Yfdw Protein From E. Coli
Length = 428
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 154 GCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVYS 205
G TD N +++Q+ E + C+A G PE+ AY+T +P ++
Sbjct: 261 GWETDPNAYIYFTIQEQNWE---NTCKAIGKPEWITDPAYSTAHARQPHIFD 309
>pdb|2KHU|A Chain A, Solution Structure Of The Ubiquitin-Binding Motif Of Human
Polymerase Iota
pdb|2KHW|A Chain A, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
Length = 108
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 217 SYAYDDATSTFTCT-GADYTITFCPSV 242
+ YDDAT TFT T G+D ITF +
Sbjct: 42 EWTYDDATKTFTVTEGSDEKITFPSDI 68
>pdb|1PQY|A Chain A, Crystal Structure Of Formyl-Coa Transferase Yfdw From E.
Coli
Length = 428
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 154 GCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEYCCSGAYATPSTCKPSVYS 205
G TD N +++Q+ E + C+A G PE+ AY+T +P ++
Sbjct: 261 GWETDPNAYIYFTIQEQNWE---NTCKAIGKPEWITDPAYSTAHARQPHIFD 309
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,086,494
Number of Sequences: 62578
Number of extensions: 356080
Number of successful extensions: 706
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 28
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)