Query 026056
Match_columns 244
No_of_seqs 140 out of 698
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:12:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 6.1E-83 1.3E-87 559.9 18.2 210 28-239 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 7.5E-81 1.6E-85 546.6 18.3 210 29-240 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 4.8E-80 1E-84 543.6 17.6 207 29-240 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 3.9E-77 8.6E-82 522.4 5.9 205 33-240 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 9.9E-59 2.1E-63 388.6 14.6 153 29-239 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 7.5E-52 1.6E-56 345.4 14.1 149 29-240 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 9.3E-50 2E-54 333.4 14.0 148 29-238 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.6 0.0005 1.1E-08 58.0 9.1 47 110-158 72-122 (155)
9 cd09216 GH64-LPHase-like glyco 95.1 0.076 1.6E-06 50.4 7.4 108 28-145 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 91.3 0.54 1.2E-05 45.0 6.4 80 58-145 62-146 (369)
11 cd09214 GH64-like glycosyl hyd 62.9 5.7 0.00012 37.4 2.4 32 113-145 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 57.1 5 0.00011 37.7 1.0 23 201-223 275-299 (319)
13 cd09220 GH64-GluB-like glycosi 53.8 6.2 0.00013 37.9 1.1 24 200-223 319-344 (369)
14 PRK02710 plastocyanin; Provisi 52.0 72 0.0016 25.2 6.8 14 55-68 83-96 (119)
15 cd09216 GH64-LPHase-like glyco 47.3 9 0.00019 36.6 1.0 22 202-223 310-333 (353)
16 cd00407 Urease_beta Urease bet 39.0 67 0.0015 25.4 4.6 54 23-76 18-92 (101)
17 PHA03094 dUTPase; Provisional 38.3 33 0.00071 28.3 3.0 30 53-82 35-70 (144)
18 TIGR00192 urease_beta urease, 36.7 76 0.0016 25.1 4.6 54 23-76 18-92 (101)
19 TIGR03096 nitroso_cyanin nitro 34.9 86 0.0019 26.0 4.9 23 53-75 93-115 (135)
20 PRK13203 ureB urease subunit b 31.8 1E+02 0.0022 24.5 4.6 54 23-76 18-92 (102)
21 PRK13202 ureB urease subunit b 30.3 1E+02 0.0023 24.5 4.4 52 25-76 21-93 (104)
22 PF11142 DUF2917: Protein of u 30.0 55 0.0012 23.3 2.6 23 54-76 2-29 (63)
23 PF05991 NYN_YacP: YacP-like N 29.4 18 0.00039 30.5 -0.0 10 131-140 2-11 (166)
24 cd05468 pVHL von Hippel-Landau 28.3 84 0.0018 25.8 3.8 50 25-77 7-56 (141)
25 PF07732 Cu-oxidase_3: Multico 27.3 86 0.0019 24.7 3.6 52 25-76 34-95 (117)
26 PF00635 Motile_Sperm: MSP (Ma 26.2 74 0.0016 23.8 3.0 42 25-66 20-65 (109)
27 PRK13201 ureB urease subunit b 25.0 1.5E+02 0.0032 24.7 4.6 54 23-76 18-92 (136)
28 PF08194 DIM: DIM protein; In 24.9 95 0.0021 20.1 2.7 12 24-35 21-32 (36)
29 PRK13204 ureB urease subunit b 23.6 2.2E+02 0.0049 24.2 5.5 55 23-77 41-116 (159)
30 PF14874 PapD-like: Flagellar- 23.3 1.5E+02 0.0033 21.9 4.2 44 23-66 20-69 (102)
31 PF00947 Pico_P2A: Picornaviru 23.3 31 0.00067 28.4 0.3 18 86-104 82-99 (127)
32 PF06282 DUF1036: Protein of u 22.5 1E+02 0.0022 24.5 3.2 39 26-64 3-44 (115)
33 PRK09918 putative fimbrial cha 22.1 2.4E+02 0.0052 24.9 5.8 41 26-66 41-90 (230)
34 PF00699 Urease_beta: Urease b 21.4 1.5E+02 0.0033 23.4 3.8 54 23-76 17-91 (100)
35 PRK13205 ureB urease subunit b 21.4 1.9E+02 0.004 24.7 4.6 54 23-76 18-92 (162)
36 PF05726 Pirin_C: Pirin C-term 20.3 1E+02 0.0022 23.6 2.7 26 54-79 4-29 (104)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=6.1e-83 Score=559.94 Aligned_cols=210 Identities=67% Similarity=1.334 Sum_probs=198.4
Q ss_pred EEEEEcCCCCccccceecCC---cCCCCCeeeCCCCeeEEEcCCCCceeeeecccCCCCCCCCCCCccCCCCCCcccccC
Q 026056 28 TFTMVNRCSYAVWPGILGNA---KLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECN 104 (244)
Q Consensus 28 t~ti~N~C~~tVwp~~~~~~---~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~ 104 (244)
+|||+|||+||||||+++++ ++..+||+|+||++++|++|++|+|||||||+|++|+ .|+++|+||||+ |+|+|+
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~-~g~~~C~TGDCg-g~l~C~ 78 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDS-SGKGSCATGDCG-GGLECN 78 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCC-CCccccccCCCC-CeeecC
Confidence 59999999999999999876 4567999999999999999999999999999999997 899999999999 889999
Q ss_pred CCCCCCCcceEEEEec-CCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCCC----CCccchh
Q 026056 105 GLTAKPPATLAEFTTG-SGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQSG----EGCKSAC 179 (244)
Q Consensus 105 g~g~~ppaTlaEftl~-~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~----~~C~SaC 179 (244)
+.+++||+|||||||. .+++|||||||||||||||+|+|+++...|+.++|.+|||+.||.||||++. +||||||
T Consensus 79 g~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 79 GAGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 9888999999999994 4678999999999999999999987667899999999999999999999743 6999999
Q ss_pred hhcCCCcccccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeecC-CceEEEec
Q 026056 180 EAFGNPEYCCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTG-ADYTITFC 239 (244)
Q Consensus 180 ~a~~~~~yCC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFC 239 (244)
.+|++|||||+|+|++|++|+|+.||++||++||+||+|||||++|+|+|++ ++|+||||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999984 89999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=7.5e-81 Score=546.62 Aligned_cols=210 Identities=55% Similarity=1.165 Sum_probs=198.2
Q ss_pred EEEEcCCCCccccceecCC--cCCCCCeeeCCCCeeEEEcCCCCc-eeeeecccCCCCCCCCCCCccCCCCCCcccccCC
Q 026056 29 FTMVNRCSYAVWPGILGNA--KLDSTGFELTPGSSRSVQVPPTWS-GRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNG 105 (244)
Q Consensus 29 ~ti~N~C~~tVwp~~~~~~--~~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g 105 (244)
|||+|||+||||||+++++ ++..+||+|+||++++|++|++|+ |||||||||++|+ .|+++|+||||| |+++|++
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~-~G~~~C~TGdCg-G~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDA-SGRGRCATGDCG-GVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCC-CCccccccCCCC-CeeecCC
Confidence 7999999999999999875 456789999999999999999996 9999999999998 789999999999 8999999
Q ss_pred CCCCCCcceEEEEec-CCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCC---CCCccchhhh
Q 026056 106 LTAKPPATLAEFTTG-SGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQS---GEGCKSACEA 181 (244)
Q Consensus 106 ~g~~ppaTlaEftl~-~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~---~~~C~SaC~a 181 (244)
.+++||+|||||||. .+++|||||||||||||||+|+|+++...|+.++|.+|||..||.||+|++ .+||+|||.+
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~ 158 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTV 158 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhc
Confidence 888999999999994 567899999999999999999998766779999999999999999999974 3699999999
Q ss_pred cCCCcccccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeecC-CceEEEecC
Q 026056 182 FGNPEYCCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTG-ADYTITFCP 240 (244)
Q Consensus 182 ~~~~~yCC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFCP 240 (244)
|++|||||+|+|++|++|+|+.||++||++||+||+||+||++++|+|++ ++|+|+|||
T Consensus 159 f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 159 FGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred cCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999986 899999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=4.8e-80 Score=543.56 Aligned_cols=207 Identities=43% Similarity=0.911 Sum_probs=189.6
Q ss_pred EEEEcCCCCccccceecCC-c-----CCCCCeeeCCCCeeEEEcCCCCc-eeeeecccCCCCCCCCCCCccCCCCCCccc
Q 026056 29 FTMVNRCSYAVWPGILGNA-K-----LDSTGFELTPGSSRSVQVPPTWS-GRFWGRTGCTFDPTTGQGSCTTGDCGSNQI 101 (244)
Q Consensus 29 ~ti~N~C~~tVwp~~~~~~-~-----~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~~~~~g~~~C~TGdCg~g~~ 101 (244)
|||+|||+||||||+++++ + +..+||+|+||++++|++|++|+ |||||||||++|+..|+++|+||||| |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999999876 2 35689999999999999999997 99999999999953689999999999 899
Q ss_pred ccCCCCCCCCcceEEEEecCCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCC-----CCCcc
Q 026056 102 ECNGLTAKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQS-----GEGCK 176 (244)
Q Consensus 102 ~C~g~g~~ppaTlaEftl~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~-----~~~C~ 176 (244)
+|++ ++.||+|||||||..+++|||||||||||||||+|.|. . .|+.++|.+|||..||.||||+. .+|||
T Consensus 80 ~C~~-~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~--~-~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~ 155 (229)
T cd09219 80 TCEN-SDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNN--I-TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCI 155 (229)
T ss_pred ecCC-CCCCCcceeeEEecCCCCceeEEEEecccccceEeccC--C-CCCCCcccCCCcccCCHHHccccCCCCccceec
Confidence 9995 56899999999995447899999999999999999993 2 69999999999999999999962 26999
Q ss_pred chhhh-cCC--CcccccCCCCCCCCCCC--ccchHHhhhcCCCcccccCCCCC--CceeecC---CceEEEecC
Q 026056 177 SACEA-FGN--PEYCCSGAYATPSTCKP--SVYSEMFKSACPRSYSYAYDDAT--STFTCTG---ADYTITFCP 240 (244)
Q Consensus 177 SaC~a-~~~--~~yCC~g~~~~p~~C~p--t~ys~~fK~~CP~AYsya~DD~t--s~ftC~~---~~y~VtFCP 240 (244)
|||.+ |+. |||||+|+|++|++|+| +.||++||++||+||||||||++ |+|+|++ ++|+|||||
T Consensus 156 SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 156 SPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred CHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 99999 655 99999999999999999 88999999999999999999999 6799986 899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=3.9e-77 Score=522.43 Aligned_cols=205 Identities=62% Similarity=1.248 Sum_probs=168.3
Q ss_pred cCCCCccccceecCC---cCCCCCeeeCCCCeeEEEcCCCCceeeeecccCCCCCCCCCCCccCCCCCCcccccCCCCCC
Q 026056 33 NRCSYAVWPGILGNA---KLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNGLTAK 109 (244)
Q Consensus 33 N~C~~tVwp~~~~~~---~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g~g~~ 109 (244)
|||+||||||+++++ ++..+||+|+||+++++.+|++|+|||||||||++++ .|+++|+||||+ |+++|++.+++
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~-~g~~~C~TGdCg-g~~~C~~~~~~ 78 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDG-GGRGSCATGDCG-GRLECNGAGGS 78 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEET-TSBEEEEES-ST-TBSSSSS----
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCC-CCCcccccCCCC-cccccccccCc
Confidence 999999999999887 3457899999999999999999999999999999998 889999999999 99999988889
Q ss_pred CCcceEEEEe-cCCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCC---CCCccchhhhcCCC
Q 026056 110 PPATLAEFTT-GSGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQS---GEGCKSACEAFGNP 185 (244)
Q Consensus 110 ppaTlaEftl-~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~---~~~C~SaC~a~~~~ 185 (244)
+|+|||||+| +.+++|||||||||||||||+|+|.+ ...|+..+|.+||+..||.|||++. .++|+|+|.++++|
T Consensus 79 ~P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~ 157 (213)
T PF00314_consen 79 PPATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTD 157 (213)
T ss_dssp SS--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SH
T ss_pred ccceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCC
Confidence 9999999999 57889999999999999999999996 5789999999999999999999853 46999999999999
Q ss_pred cccccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeecC-CceEEEecC
Q 026056 186 EYCCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTG-ADYTITFCP 240 (244)
Q Consensus 186 ~yCC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFCP 240 (244)
+|||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|++ .+|+|||||
T Consensus 158 ~~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 158 EYCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 9999999999999999999999999999999999999999999985 899999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=9.9e-59 Score=388.65 Aligned_cols=153 Identities=53% Similarity=1.140 Sum_probs=137.0
Q ss_pred EEEEcCCCCccccceecCC--cCCCCCeeeCCCCeeEEEcCCCCceeeeecccCCCCCCCCCCCccCCCCCCcccccCCC
Q 026056 29 FTMVNRCSYAVWPGILGNA--KLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNGL 106 (244)
Q Consensus 29 ~ti~N~C~~tVwp~~~~~~--~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g~ 106 (244)
|||+|||+||||||+++++ ++..+||+|+||+++++.+|++|+|||||||+|+++++.|++.|+||||+ |+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g- 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG- 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC-
Confidence 7999999999999999876 45678999999999999999999999999999999964589999999999 8999998
Q ss_pred CCCCCcceEEEEec-CCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCCCCCccchhhhcCCC
Q 026056 107 TAKPPATLAEFTTG-SGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNP 185 (244)
Q Consensus 107 g~~ppaTlaEftl~-~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~~~C~SaC~a~~~~ 185 (244)
++.||+|||||||. .+++|||||||||||||||+|+|++ +.|+..+|.+
T Consensus 79 ~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~---------------------------- 128 (157)
T cd09215 79 TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA---------------------------- 128 (157)
T ss_pred CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc----------------------------
Confidence 55799999999994 5678999999999999999999975 3355444432
Q ss_pred cccccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeecC-CceEEEec
Q 026056 186 EYCCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTG-ADYTITFC 239 (244)
Q Consensus 186 ~yCC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtFC 239 (244)
||+||+|||||++|+|+|++ ++|+|+||
T Consensus 129 --------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 --------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred --------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999986 89999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=7.5e-52 Score=345.42 Aligned_cols=149 Identities=54% Similarity=1.151 Sum_probs=132.3
Q ss_pred EEEEcCCCCccccceecCCcCCCCCeeeCCCCeeEEEcCCC-CceeeeecccCCCCCCCCCCCccCCCCCCcccccCCCC
Q 026056 29 FTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPPT-WSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNGLT 107 (244)
Q Consensus 29 ~ti~N~C~~tVwp~~~~~~~~~~~g~~L~~G~s~s~~vp~~-WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g~g 107 (244)
|+|+|||+||||||+++. .+||+|+||+++++++|++ |+|||||||+|++++ .|+++|+||||| |+++|.+ +
T Consensus 1 ~~~~N~C~~tvWp~~~~~----~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~-~g~~~C~TGdCg-g~l~C~~-~ 73 (151)
T cd09217 1 FTITNNCGYTVWPAATPV----GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDA-SGRGSCQTGDCG-GVLSCTG-S 73 (151)
T ss_pred CEEEeCCCCcccceEecC----CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCC-CCCCcccccCCC-CeeecCC-C
Confidence 789999999999999863 5899999999999999997 999999999999998 789999999999 8999985 5
Q ss_pred CCCCcceEEEEecCCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCCCCCccchhhhcCCCcc
Q 026056 108 AKPPATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGNPEY 187 (244)
Q Consensus 108 ~~ppaTlaEftl~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~~~C~SaC~a~~~~~y 187 (244)
+.||+||+||||..+++||||||+||||||||.|+|++ ..|+.++|..|
T Consensus 74 g~pp~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~--~~C~~~~C~~d----------------------------- 122 (151)
T cd09217 74 GKPPATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTG--GGCHAIPCAAN----------------------------- 122 (151)
T ss_pred CCCCceeEEEEecCCCCccEEEEeecccccceEEecCC--CCCCCCcCCCC-----------------------------
Confidence 68999999999954578999999999999999999974 23554444431
Q ss_pred cccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeec-CCceEEEecC
Q 026056 188 CCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCT-GADYTITFCP 240 (244)
Q Consensus 188 CC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~-~~~y~VtFCP 240 (244)
||+||+|++|| .++++|+ +++|+|+|||
T Consensus 123 ------------------------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 123 ------------------------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ------------------------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 99999999995 7999998 5899999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=9.3e-50 Score=333.38 Aligned_cols=148 Identities=47% Similarity=0.858 Sum_probs=129.2
Q ss_pred EEEEcCCCCccccceecCC---cCCCCCeeeCCCCeeEEEcCCCCceeeeecccCCCCCCCCCCCccCCCCCCcccccCC
Q 026056 29 FTMVNRCSYAVWPGILGNA---KLDSTGFELTPGSSRSVQVPPTWSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNG 105 (244)
Q Consensus 29 ~ti~N~C~~tVwp~~~~~~---~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g 105 (244)
|||+|||++||||++++++ .+..+||+|.||++++|++|..|+||||+||+|+++. .+++.|+||||+ + +.|.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~-~g~g~C~TGdcg-g-~~c~g 77 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDF-SGTTGCLTQDPG-V-VNPTD 77 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccC-CCCccccccCCC-C-cccCC
Confidence 7999999999999999875 3456899999999999999999999999999999997 789999999998 5 67877
Q ss_pred CCCCCCcceEEEEec-CCCcceeeeccccCcCCCceEeecCCCCCCCCccccCCCCCCCCccccCCCCCCccchhhhcCC
Q 026056 106 LTAKPPATLAEFTTG-SGTQDFYDVSLVDGYNLPMIVEPIGGSGTCLSTGCVTDLNQRCPAELRDQSGEGCKSACEAFGN 184 (244)
Q Consensus 106 ~g~~ppaTlaEftl~-~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dln~~CP~~l~v~~~~~C~SaC~a~~~ 184 (244)
.++.||+|||||||. .+++|||||||||||||||+|+|.++.+.
T Consensus 78 ~~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~----------------------------------- 122 (153)
T cd08961 78 PNRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGT----------------------------------- 122 (153)
T ss_pred CCCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCC-----------------------------------
Confidence 778999999999994 45789999999999999999999743221
Q ss_pred CcccccCCCCCCCCCCCccchHHhhhcCCCcccccCCCCCCceeecC-CceEEEe
Q 026056 185 PEYCCSGAYATPSTCKPSVYSEMFKSACPRSYSYAYDDATSTFTCTG-ADYTITF 238 (244)
Q Consensus 185 ~~yCC~g~~~~p~~C~pt~ys~~fK~~CP~AYsya~DD~ts~ftC~~-~~y~VtF 238 (244)
|++.. |||+|||||+.++|+|++ .+|.|+|
T Consensus 123 --------------C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 123 --------------CLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred --------------ccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 22211 999999999999999985 8999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.58 E-value=0.0005 Score=58.00 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=36.3
Q ss_pred CCcceEEEEec-CCCcceeeeccccCcCC---CceEeecCCCCCCCCccccCC
Q 026056 110 PPATLAEFTTG-SGTQDFYDVSLVDGYNL---PMIVEPIGGSGTCLSTGCVTD 158 (244)
Q Consensus 110 ppaTlaEftl~-~~~~d~YDVSlVdG~Nl---P~~i~p~~g~~~C~~~~C~~d 158 (244)
.|.|..|++|. .+.+.|||+|.|.|... +|.|.|.+ ..|.++.|..-
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~G 122 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPNG 122 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC--CCCCceECCCC
Confidence 48999999995 45689999999999743 47788875 56877777653
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.10 E-value=0.076 Score=50.41 Aligned_cols=108 Identities=20% Similarity=0.350 Sum_probs=63.2
Q ss_pred EEEEEcCCCC--ccccceecCC----------------cCCCC----------Ceee-CCCCeeEEEcCCCCceeeeecc
Q 026056 28 TFTMVNRCSY--AVWPGILGNA----------------KLDST----------GFEL-TPGSSRSVQVPPTWSGRFWGRT 78 (244)
Q Consensus 28 t~ti~N~C~~--tVwp~~~~~~----------------~~~~~----------g~~L-~~G~s~s~~vp~~WsGriWaRt 78 (244)
.|+|+||=+. +||..+++.. ++... ...| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4788888877 7887775421 00000 1233 257888999998 999999543
Q ss_pred cCCCCCCCCCCCccCCCCCCcccccCCCCCCCC-----cceEEEEecCCCcceeeeccccCcCCCceEeecC
Q 026056 79 GCTFDPTTGQGSCTTGDCGSNQIECNGLTAKPP-----ATLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPIG 145 (244)
Q Consensus 79 gCs~~~~~g~~~C~TGdCg~g~~~C~g~g~~pp-----aTlaEftl~~~~~d~YDVSlVdG~NlP~~i~p~~ 145 (244)
+=. -.|.= .+ +.+..+-.....+-| -..+|||+... .-|=++|.||-|.+||.|+-.+
T Consensus 81 g~~-----L~F~~-~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~-gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSK-----LRFKV-VT--NPALVQPAGWNPSDPNFNILHDWVEFTFNDA-GLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCe-----eEEEe-cC--CCcccCCCCCCCCCCCccceEEEEEEEecCC-ceEecccceeeeccceEEEEec
Confidence 210 01111 11 112222111111111 15599999643 4689999999999999998664
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.30 E-value=0.54 Score=44.96 Aligned_cols=80 Identities=26% Similarity=0.305 Sum_probs=48.7
Q ss_pred CCCeeEEEcCCCCceeeeecccCCCCCCCCCCCccCCCCCCcccccCCCCCCCC-----cceEEEEecCCCcceeeeccc
Q 026056 58 PGSSRSVQVPPTWSGRFWGRTGCTFDPTTGQGSCTTGDCGSNQIECNGLTAKPP-----ATLAEFTTGSGTQDFYDVSLV 132 (244)
Q Consensus 58 ~G~s~s~~vp~~WsGriWaRtgCs~~~~~g~~~C~TGdCg~g~~~C~g~g~~pp-----aTlaEftl~~~~~d~YDVSlV 132 (244)
+|++.++++|.-++||||=-.+=. -.|. ...+ |.+.++-.-...+-| -..+|||+.. ..-|=++|.|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~-----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~-~~l~~N~S~V 133 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDK-----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS-GQLYANISYV 133 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCe-----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC-CceEecccce
Confidence 478899999998999999543210 0111 1111 222222111111111 1569999964 4568999999
Q ss_pred cCcCCCceEeecC
Q 026056 133 DGYNLPMIVEPIG 145 (244)
Q Consensus 133 dG~NlP~~i~p~~ 145 (244)
|-|.+||.|+-.+
T Consensus 134 D~~~~P~~l~l~~ 146 (369)
T cd09220 134 DFVGLPLGLSLTT 146 (369)
T ss_pred eeeccCeEEEEEc
Confidence 9999999998653
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=62.94 E-value=5.7 Score=37.36 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=27.4
Q ss_pred ceEEEEecCCCcceeeeccccCcCCCceEeecC
Q 026056 113 TLAEFTTGSGTQDFYDVSLVDGYNLPMIVEPIG 145 (244)
Q Consensus 113 TlaEftl~~~~~d~YDVSlVdG~NlP~~i~p~~ 145 (244)
..+|||+. ...-|-++|.||-|.|||.|+-.+
T Consensus 124 df~EFT~n-~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYN-ATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEec-CCceEecccceeeeccCeEEEEEc
Confidence 55999996 367899999999999999998764
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=57.12 E-value=5 Score=37.74 Aligned_cols=23 Identities=22% Similarity=0.639 Sum_probs=20.3
Q ss_pred CccchHHhhhcCC--CcccccCCCC
Q 026056 201 PSVYSEMFKSACP--RSYSYAYDDA 223 (244)
Q Consensus 201 pt~ys~~fK~~CP--~AYsya~DD~ 223 (244)
.+.|++++++.-. .||.|||||-
T Consensus 275 tN~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 275 ANYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred chHHHHHHHHhccCCCeeecccccc
Confidence 3679999999997 7899999995
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=53.83 E-value=6.2 Score=37.89 Aligned_cols=24 Identities=33% Similarity=0.755 Sum_probs=20.9
Q ss_pred CCccchHHhhhcCC--CcccccCCCC
Q 026056 200 KPSVYSEMFKSACP--RSYSYAYDDA 223 (244)
Q Consensus 200 ~pt~ys~~fK~~CP--~AYsya~DD~ 223 (244)
..++|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 34679999999998 7899999996
No 14
>PRK02710 plastocyanin; Provisional
Probab=52.04 E-value=72 Score=25.15 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=8.6
Q ss_pred eeCCCCeeEEEcCC
Q 026056 55 ELTPGSSRSVQVPP 68 (244)
Q Consensus 55 ~L~~G~s~s~~vp~ 68 (244)
.+.||+++++.+..
T Consensus 83 ~~~pg~t~~~tF~~ 96 (119)
T PRK02710 83 AFAPGESWEETFSE 96 (119)
T ss_pred ccCCCCEEEEEecC
Confidence 45667766666554
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=47.31 E-value=9 Score=36.58 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=19.5
Q ss_pred ccchHHhhhcCC--CcccccCCCC
Q 026056 202 SVYSEMFKSACP--RSYSYAYDDA 223 (244)
Q Consensus 202 t~ys~~fK~~CP--~AYsya~DD~ 223 (244)
++|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999995
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=39.03 E-value=67 Score=25.42 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=36.7
Q ss_pred CccceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...+++|+|...-+|++|.+- |. . +.++....+||+++++++ |-.=..+|+|
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 34578999999999999999851 21 1 234456778999999975 3332345554
No 17
>PHA03094 dUTPase; Provisional
Probab=38.27 E-value=33 Score=28.32 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=24.6
Q ss_pred CeeeCCCCeeE------EEcCCCCceeeeecccCCC
Q 026056 53 GFELTPGSSRS------VQVPPTWSGRFWGRTGCTF 82 (244)
Q Consensus 53 g~~L~~G~s~s------~~vp~~WsGriWaRtgCs~ 82 (244)
.+.|.||+... +.+|.+|.|.|++|.+-..
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla~ 70 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLSL 70 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccccc
Confidence 47888998877 6789999999999976543
No 18
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=36.71 E-value=76 Score=25.14 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=36.7
Q ss_pred CccceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...++.|+|.-.-+|++|.+- |. . +.++....+||+++++++ |-+=..+|+|
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 44678999999999999999751 21 1 134456678999999975 4333345554
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=34.92 E-value=86 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=19.5
Q ss_pred CeeeCCCCeeEEEcCCCCceeee
Q 026056 53 GFELTPGSSRSVQVPPTWSGRFW 75 (244)
Q Consensus 53 g~~L~~G~s~s~~vp~~WsGriW 75 (244)
...|+||++.++.++..=.|++|
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEE
Confidence 35689999999998888889987
No 20
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.83 E-value=1e+02 Score=24.47 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=36.5
Q ss_pred CccceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...++.|+|...-+|++|.+- |. . +.++....+||+++++.+ +-+=..+|+|
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAGARRVYG 92 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 34578999999999999999851 21 1 234456678999999975 3332345554
No 21
>PRK13202 ureB urease subunit beta; Reviewed
Probab=30.33 E-value=1e+02 Score=24.49 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=35.5
Q ss_pred cceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 25 SGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 25 ~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
...+++|+|...-+|++|.+- |. . +.++....+||+++++++ |-+=..+|+|
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 93 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGGRREVPG 93 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccCCeEEEc
Confidence 467999999999999999751 21 1 134456678999999975 4333345554
No 22
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=29.97 E-value=55 Score=23.29 Aligned_cols=23 Identities=43% Similarity=0.793 Sum_probs=17.5
Q ss_pred eeeCCCCeeEEEcCCCC-----ceeeee
Q 026056 54 FELTPGSSRSVQVPPTW-----SGRFWG 76 (244)
Q Consensus 54 ~~L~~G~s~s~~vp~~W-----sGriWa 76 (244)
|+|.||+..++....+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888888877654 488885
No 23
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=29.35 E-value=18 Score=30.49 Aligned_cols=10 Identities=60% Similarity=0.976 Sum_probs=7.8
Q ss_pred cccCcCCCce
Q 026056 131 LVDGYNLPMI 140 (244)
Q Consensus 131 lVdG~NlP~~ 140 (244)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998554
No 24
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=28.30 E-value=84 Score=25.81 Aligned_cols=50 Identities=22% Similarity=0.168 Sum_probs=31.2
Q ss_pred cceEEEEEcCCCCccccceecCCcCCCCCeeeCCCCeeEEEcCCCCceeeeec
Q 026056 25 SGATFTMVNRCSYAVWPGILGNAKLDSTGFELTPGSSRSVQVPPTWSGRFWGR 77 (244)
Q Consensus 25 ~~~t~ti~N~C~~tVwp~~~~~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaR 77 (244)
....++|+|+.+.+|-+-+.-...-...=..|+||+...++ .+.|..|--
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~---Ty~~H~W~~ 56 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQN---TYVGHPWLF 56 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeec---ccCCCcEEE
Confidence 45789999999999855444221000011378999987553 456777753
No 25
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=27.25 E-value=86 Score=24.69 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=33.6
Q ss_pred cceEEEEEcCCCCcc---ccceecCCc------CCCCCeeeCCCCeeEEEcCCCC-ceeeee
Q 026056 25 SGATFTMVNRCSYAV---WPGILGNAK------LDSTGFELTPGSSRSVQVPPTW-SGRFWG 76 (244)
Q Consensus 25 ~~~t~ti~N~C~~tV---wp~~~~~~~------~~~~g~~L~~G~s~s~~vp~~W-sGriWa 76 (244)
+...|+|+|+=+.+. |-|+..... .......+.||+++++..+..= .|.+|=
T Consensus 34 d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wY 95 (117)
T PF07732_consen 34 DTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWY 95 (117)
T ss_dssp EEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEE
T ss_pred CeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeE
Confidence 356899999998865 555442221 1112357899998888765554 688883
No 26
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=26.24 E-value=74 Score=23.75 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=29.3
Q ss_pred cceEEEEEcCCCCccccceecCC----cCCCCCeeeCCCCeeEEEc
Q 026056 25 SGATFTMVNRCSYAVWPGILGNA----KLDSTGFELTPGSSRSVQV 66 (244)
Q Consensus 25 ~~~t~ti~N~C~~tVwp~~~~~~----~~~~~g~~L~~G~s~s~~v 66 (244)
....|+|+|.-..+|.--+..++ ...+.--.|.||++..+.|
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I 65 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITI 65 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEE
Confidence 46799999999999877776654 2223456789999988886
No 27
>PRK13201 ureB urease subunit beta; Reviewed
Probab=25.04 E-value=1.5e+02 Score=24.67 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=37.2
Q ss_pred CccceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...++.|+|.-.-+|++|.+- |. . +.++....+||+++++.+ +-+=..+|+|
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG~r~V~G 92 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAGKRKIFG 92 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 44578999999999999999751 21 1 234456778999999976 4333346654
No 28
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=24.88 E-value=95 Score=20.11 Aligned_cols=12 Identities=8% Similarity=0.393 Sum_probs=7.0
Q ss_pred ccceEEEEEcCC
Q 026056 24 LSGATFTMVNRC 35 (244)
Q Consensus 24 ~~~~t~ti~N~C 35 (244)
+.+-+++|.=+|
T Consensus 21 ~~pG~ViING~C 32 (36)
T PF08194_consen 21 ATPGNVIINGKC 32 (36)
T ss_pred CCCCeEEECcee
Confidence 445667665555
No 29
>PRK13204 ureB urease subunit beta; Reviewed
Probab=23.58 E-value=2.2e+02 Score=24.23 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred CccceEEEEEcCCCCcccccee-----cCC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeeec
Q 026056 23 GLSGATFTMVNRCSYAVWPGIL-----GNA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWGR 77 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~-----~~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWaR 77 (244)
+-...+++|+|.-.-+|++|.+ .|. . +.++....+||+++++.+ |-+=..+|+|-
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG~r~V~Gf 116 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAGKRFIFGF 116 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccCceEEEcc
Confidence 4457899999999999999975 121 1 134456778999999975 43334566653
No 30
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=23.33 E-value=1.5e+02 Score=21.89 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=28.1
Q ss_pred CccceEEEEEcCCCCcccccee-cC---C--cCCCCCeeeCCCCeeEEEc
Q 026056 23 GLSGATFTMVNRCSYAVWPGIL-GN---A--KLDSTGFELTPGSSRSVQV 66 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~-~~---~--~~~~~g~~L~~G~s~s~~v 66 (244)
.....+|+|+|....+.---+. +. . ......-.|+||.+.++.|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 3456899999999887533222 22 1 1122234699999988887
No 31
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=23.29 E-value=31 Score=28.37 Aligned_cols=18 Identities=39% Similarity=1.084 Sum_probs=13.7
Q ss_pred CCCCCccCCCCCCcccccC
Q 026056 86 TGQGSCTTGDCGSNQIECN 104 (244)
Q Consensus 86 ~g~~~C~TGdCg~g~~~C~ 104 (244)
.+.+.|+-|||| |.|.|+
T Consensus 82 ~g~Gp~~PGdCG-g~L~C~ 99 (127)
T PF00947_consen 82 IGEGPAEPGDCG-GILRCK 99 (127)
T ss_dssp EEE-SSSTT-TC-SEEEET
T ss_pred eecccCCCCCCC-ceeEeC
Confidence 357899999999 889997
No 32
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.51 E-value=1e+02 Score=24.49 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCccccceecCC--cCCCCC-eeeCCCCeeEE
Q 026056 26 GATFTMVNRCSYAVWPGILGNA--KLDSTG-FELTPGSSRSV 64 (244)
Q Consensus 26 ~~t~ti~N~C~~tVwp~~~~~~--~~~~~g-~~L~~G~s~s~ 64 (244)
.+-|+|-|+-++.|++++.-.. .-..-| +.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 3568999999999999885322 111223 57888876655
No 33
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=22.11 E-value=2.4e+02 Score=24.91 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcc----ccceecCC-----cCCCCCeeeCCCCeeEEEc
Q 026056 26 GATFTMVNRCSYAV----WPGILGNA-----KLDSTGFELTPGSSRSVQV 66 (244)
Q Consensus 26 ~~t~ti~N~C~~tV----wp~~~~~~-----~~~~~g~~L~~G~s~s~~v 66 (244)
..+|+|.|+=..++ |.--.... -..+-=++|+||++..+.+
T Consensus 41 ~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi 90 (230)
T PRK09918 41 EGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF 90 (230)
T ss_pred eEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence 46899999887753 54211111 0123357888998887754
No 34
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=21.43 E-value=1.5e+02 Score=23.44 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=30.7
Q ss_pred CccceEEEEEcCCCCcccccee-----cCC---------------cCCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGIL-----GNA---------------KLDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~-----~~~---------------~~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...+++|+|.-.-+|++|.+ .|. -+.++....+||+++++.+ |-+=..+|+|
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG~r~v~G 91 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGGNRRVYG 91 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-STT-EE-S
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccCCeEEEc
Confidence 3456899999999999999874 121 1234456778999999975 4333345554
No 35
>PRK13205 ureB urease subunit beta; Reviewed
Probab=21.37 E-value=1.9e+02 Score=24.71 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=36.6
Q ss_pred CccceEEEEEcCCCCccccceec-----CC------------c---CCCCCeeeCCCCeeEEEc-CCCCceeeee
Q 026056 23 GLSGATFTMVNRCSYAVWPGILG-----NA------------K---LDSTGFELTPGSSRSVQV-PPTWSGRFWG 76 (244)
Q Consensus 23 ~~~~~t~ti~N~C~~tVwp~~~~-----~~------------~---~~~~g~~L~~G~s~s~~v-p~~WsGriWa 76 (244)
+-...+|+|+|.-.-+|.+|.+- |. . +.++....+||+++++.+ +-+=..+|+|
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG~R~V~G 92 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGGDRIVAG 92 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 45678999999999999999751 21 1 234456678999999975 3332345544
No 36
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=20.33 E-value=1e+02 Score=23.59 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=19.4
Q ss_pred eeeCCCCeeEEEcCCCCceeeeeccc
Q 026056 54 FELTPGSSRSVQVPPTWSGRFWGRTG 79 (244)
Q Consensus 54 ~~L~~G~s~s~~vp~~WsGriWaRtg 79 (244)
..|+||++.++.+|.+|..-+....|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57899999999999999988877654
Done!