BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026057
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 139/245 (56%), Gaps = 43/245 (17%)
Query: 2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
K ++ ++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + +
Sbjct: 70 KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 129
Query: 60 TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
RQ +A + YE NVLG +GPR+M + +P ++ V+
Sbjct: 130 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRPR 171
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
H + L +QN E ++ L+NK P W++ Q + LNF+GRVT
Sbjct: 172 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVT 215
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
ASVKNFQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 216 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 268
Query: 240 KIACE 244
K+ACE
Sbjct: 269 KLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 167 bits (422), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 138/245 (56%), Gaps = 43/245 (17%)
Query: 2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
K ++ ++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + +
Sbjct: 62 KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 121
Query: 60 TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
RQ +A + YE NVLG +GPR+M + +P ++ V
Sbjct: 122 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPR 163
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
H + L +QN E ++ L+NK P W++ Q + LNF+GRVT
Sbjct: 164 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVT 207
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
ASVKNFQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 208 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 260
Query: 240 KIACE 244
K+ACE
Sbjct: 261 KLACE 265
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 138/245 (56%), Gaps = 43/245 (17%)
Query: 2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDG--HPPNAEARVTKCRS 59
K ++ ++Y+IS++ D+S+G +YIG+LRSN +GTKFT+YD +P A + + +
Sbjct: 62 KRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT 121
Query: 60 TRQVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQT 119
RQ +A + YE NVLG +GPR+M + +P ++ V
Sbjct: 122 LRQ---------------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVCIRPR 163
Query: 120 EFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVT 179
H + L +QN E ++ L+NK P W++ + + LNF+GRVT
Sbjct: 164 NEHETLL----------------ARWQNKNTESIIELQNKTPVWNDDTESYVLNFHGRVT 207
Query: 180 VASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239
ASVKNFQ++ G + + +++QFG+V +DVFTMDY YP+ A QAFAI LSSFD+
Sbjct: 208 QASVKNFQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDS 260
Query: 240 KIACE 244
K+ACE
Sbjct: 261 KLACE 265
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 128/243 (52%), Gaps = 41/243 (16%)
Query: 2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
K +R +Y+IS++ ++S+G +IG+LRSN LG +FT++D T S R
Sbjct: 75 KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLR 134
Query: 62 QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
Q +A + YE NVLG RGPRRM + IP S E V P +
Sbjct: 135 Q---------------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRN 175
Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
GL +QN E L+ L NK P W++ + LNF GRVT A
Sbjct: 176 ASDGL---------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220
Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTKI 241
SVKNFQ+V + + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD K+
Sbjct: 221 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKL 273
Query: 242 ACE 244
ACE
Sbjct: 274 ACE 276
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 123/237 (51%), Gaps = 41/237 (17%)
Query: 2 KCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTR 61
K +R +Y+IS++ ++S+G +IG+LRSN LG +FT++D T S R
Sbjct: 51 KRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLR 110
Query: 62 QVNMKQVSPKLLAGNYHVAHISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEF 121
Q +A + YE NVLG RGPRRM + IP S E V P +
Sbjct: 111 Q---------------ELAAVIYETNVLGFRGPRRMTVI---IPGMSAENERV-PIRPRN 151
Query: 122 HHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKAPRWHEQLQCWCLNFNGRVTVA 181
GL +QN E L+ L NK P W++ + LNF GRVT A
Sbjct: 152 ASDGL---------------LVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 196
Query: 182 SVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238
SVKNFQ+V + + + ++LQFG+V +D FT+DY+YP+ A QAFAI LSSFD
Sbjct: 197 SVKNFQIVHA-------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,294,029
Number of Sequences: 62578
Number of extensions: 284833
Number of successful extensions: 514
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 5
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)