Query 026057
Match_columns 244
No_of_seqs 143 out of 355
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 8E-85 1.7E-89 600.5 18.5 204 1-244 152-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.5E-72 7.5E-77 501.8 13.9 204 1-238 43-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 4.2E-21 9.1E-26 184.1 4.5 77 152-238 485-561 (565)
4 PF12043 DUF3527: Domain of un 97.4 0.00025 5.3E-09 67.1 5.0 58 176-239 287-344 (346)
5 PRK15095 FKBP-type peptidyl-pr 28.8 93 0.002 26.1 4.2 25 202-226 107-131 (156)
6 TIGR03562 osmo_induc_OsmC pero 24.7 64 0.0014 26.4 2.5 14 224-237 42-55 (135)
7 PF08512 Rtt106: Histone chape 22.7 1.2E+02 0.0027 23.1 3.6 58 152-216 20-78 (95)
8 PRK10737 FKBP-type peptidyl-pr 19.0 1.5E+02 0.0033 26.0 3.8 24 203-226 104-127 (196)
9 TIGR03563 perox_SACOL1771 pero 18.9 99 0.0021 24.8 2.4 14 224-237 41-54 (138)
10 TIGR03561 organ_hyd_perox pero 18.5 1.5E+02 0.0033 23.6 3.5 15 224-238 40-54 (134)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=8e-85 Score=600.47 Aligned_cols=204 Identities=61% Similarity=1.024 Sum_probs=181.4
Q ss_pred CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057 1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA 80 (244)
Q Consensus 1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela 80 (244)
+|+||+||+|||||++++||||++++|||||||||+||||||||+|.++.. .++ ++|.+++|||
T Consensus 152 rk~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~r----------~~~------~~~~~~~~la 215 (355)
T KOG2502|consen 152 RKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPSR----------RFN------KVPSGRQELA 215 (355)
T ss_pred eeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCccc----------ccc------cCCcccceee
Confidence 589999999999999999999999999999999999999999999865532 111 4678999999
Q ss_pred EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057 81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA 160 (244)
Q Consensus 81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~ 160 (244)
+|+||+||||+||||||+|+||.||.++ ++|..|.|++..+.. .+ +++. +...+++++|+||+
T Consensus 216 ~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~-----~l--~r~~--------~k~~e~~lvL~NK~ 278 (355)
T KOG2502|consen 216 AVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS-----LL--FRSQ--------NKDKEGLLVLKNKT 278 (355)
T ss_pred EEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc-----hh--hhcc--------ccCcccceEeecCC
Confidence 9999999999999999999999999887 788888877654421 11 1211 22368999999999
Q ss_pred CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCccc
Q 026057 161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTK 240 (244)
Q Consensus 161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~K 240 (244)
|+||+++||||||||||||+||||||||||.. ++++|||||||||+|+|||||+||||+||||||||||||+|
T Consensus 279 P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtK 351 (355)
T KOG2502|consen 279 PRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTK 351 (355)
T ss_pred CccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999985 57999999999999999999999999999999999999999
Q ss_pred cccC
Q 026057 241 IACE 244 (244)
Q Consensus 241 ~aCe 244 (244)
||||
T Consensus 352 laCe 355 (355)
T KOG2502|consen 352 LACE 355 (355)
T ss_pred ccCC
Confidence 9998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.5e-72 Score=501.83 Aligned_cols=204 Identities=55% Similarity=0.905 Sum_probs=152.8
Q ss_pred CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057 1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA 80 (244)
Q Consensus 1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela 80 (244)
+|+||+++||||||++++|+||++++|||||||||+||+|+|||+|.+++.+. ..+|+.+..|+|||
T Consensus 43 rK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa 109 (246)
T PF01167_consen 43 RKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTIYDNGPNPKKSK-------------SISPREPQIRRELA 109 (246)
T ss_dssp EEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEEEESSB-CCCST-------------CCTSCCSSB--EEE
T ss_pred eecccCCCcceEEecCCCccccCCCceeeeeccccceeEEEEECCCCCCcccc-------------ccCcCcCcCcceEE
Confidence 47899999999999999999999999999999999999999999998776432 12455677899999
Q ss_pred EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057 81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA 160 (244)
Q Consensus 81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~ 160 (244)
+|+|++||||++|||||+|+||+|+....++++..|.++ . ..+..+.+.. ......+++++|+||+
T Consensus 110 ~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p---~-~~~~~~~~~~----------~~~~~~~~~~~l~~k~ 175 (246)
T PF01167_consen 110 AVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQP---L-NQEKDSLLSR----------FQNKKKDELIVLKNKP 175 (246)
T ss_dssp EEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B--------S-S-CCCSHHHH----------HHCT-TTSEEEEEE--
T ss_pred EEEEEeccccccCCcEEEEEecCCCccccccceeeeeec---c-cccccccccc----------ccccCCcceEEEecCC
Confidence 999999999999999999999999877665554443321 1 1011111110 1123467999999999
Q ss_pred CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCc
Q 026057 161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238 (244)
Q Consensus 161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd 238 (244)
|+||+++++|+|||+|||++|||||||||+++ +++++||||||+++|.|+|||+|||||+|||||||||||
T Consensus 176 P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~-------~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 176 PRWNEELQSYVLNFNGRVTVASVKNFQLVHPS-------DPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp -EEETTTTEEEEEETTSECC-BTTEEEEEBTT-------BTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred CcEeccCCeEEeccCCeEeccccceeEEEccC-------CCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999985 578999999999999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.82 E-value=4.2e-21 Score=184.06 Aligned_cols=77 Identities=43% Similarity=0.742 Sum_probs=72.1
Q ss_pred ceEEEeeCCCccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHH
Q 026057 152 GLLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFA 231 (244)
Q Consensus 152 ~~~~l~nk~P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFa 231 (244)
.+.++.||+|-|||.+|-|+|||.||||+.|.||||+-.. .+.|||||+|+-+.|++||+||+|+.||||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~----------gkQvmqFgRidg~aytldfqypfSa~QaFa 554 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF----------GKQVMQFGRIDGPAYTLDFQYPFSAGQAFA 554 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec----------chhhheeccccCCcccCCCCCchHHHHHHH
Confidence 5569999999999999999999999999999999999764 578999999999999999999999999999
Q ss_pred HHHHhCc
Q 026057 232 ICLSSFD 238 (244)
Q Consensus 232 i~Lssfd 238 (244)
+||++.-
T Consensus 555 valanvt 561 (565)
T KOG2503|consen 555 VALANVT 561 (565)
T ss_pred HHHhhhh
Confidence 9999754
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=97.36 E-value=0.00025 Score=67.13 Aligned_cols=58 Identities=19% Similarity=0.454 Sum_probs=47.6
Q ss_pred CcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCcc
Q 026057 176 GRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDT 239 (244)
Q Consensus 176 GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~ 239 (244)
.+...+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||+||||+||+|-.++
T Consensus 287 ~~~~~~~~~~feLf~QG------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45555677778888763 23445999999999999999999999999999999997764
No 5
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=28.84 E-value=93 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=20.6
Q ss_pred CeEEEEeeeeCCCeEEEEccCCCCH
Q 026057 202 ENVILQFGKVGKDVFTMDYQYPISA 226 (244)
Q Consensus 202 ~~~vlqfGK~~~~~F~~D~~~PlS~ 226 (244)
+.+....-+++++..++||.|||..
T Consensus 107 ~~~~~~V~~i~~~~v~vD~NHPLAG 131 (156)
T PRK15095 107 SEMPGVIREINGDSITVDFNHPLAG 131 (156)
T ss_pred CEEEEEEEEEcCCEEEEECCCcCCC
Confidence 4456667789999999999999974
No 6
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=24.75 E-value=64 Score=26.43 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHhC
Q 026057 224 ISAFQAFAICLSSF 237 (244)
Q Consensus 224 lS~~QAFai~Lssf 237 (244)
.+|.|.|+.||++|
T Consensus 42 ~nPeeLLlaAlaaC 55 (135)
T TIGR03562 42 TNPEELIAAAHAGC 55 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999986
No 7
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=22.72 E-value=1.2e+02 Score=23.15 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=35.5
Q ss_pred ceEEE-eeCCCccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeE
Q 026057 152 GLLVL-RNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVF 216 (244)
Q Consensus 152 ~~~~l-~nk~P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F 216 (244)
+.+.+ ..|||.+=.-..--.++| .||...+.|+|.|+-.-. +.+....+|.-|.++.+
T Consensus 20 ~~l~f~~~kP~~~i~~~dI~~v~f-eRv~~~~~ktFDl~v~~k------~~~~~~~~fs~I~~~e~ 78 (95)
T PF08512_consen 20 KCLLFGLEKPPFVIPLDDIESVEF-ERVSSFSSKTFDLVVILK------DYEGPPHEFSSIDREEY 78 (95)
T ss_dssp SEEEEECSSS-EEEEGGGEEEEEE-E--ESSSSSEEEEEEEET------T-TS-EEEEEEEEGGGH
T ss_pred ceEEEecCCCeEEEEhhHeeEEEE-EecccCcceEEEEEEEEe------cCCCCcEEEeeECHHHH
Confidence 34444 777776655444455555 466889999999988741 23467788888876654
No 8
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=19.05 E-value=1.5e+02 Score=26.05 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.6
Q ss_pred eEEEEeeeeCCCeEEEEccCCCCH
Q 026057 203 NVILQFGKVGKDVFTMDYQYPISA 226 (244)
Q Consensus 203 ~~vlqfGK~~~~~F~~D~~~PlS~ 226 (244)
.+....=+|.++..++||.+||..
T Consensus 104 ~~~~~V~ev~~d~V~vD~NHPLAG 127 (196)
T PRK10737 104 PVPVEITAVEDDHVVVDGNHMLAG 127 (196)
T ss_pred cEEEEEEEEcCCEEEEECCCcCCC
Confidence 466678889999999999999974
No 9
>TIGR03563 perox_SACOL1771 peroxiredoxin, SACOL1771 subfamily. This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.
Probab=18.90 E-value=99 Score=24.81 Aligned_cols=14 Identities=0% Similarity=-0.128 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHhC
Q 026057 224 ISAFQAFAICLSSF 237 (244)
Q Consensus 224 lS~~QAFai~Lssf 237 (244)
.+|.|.|+.||++|
T Consensus 41 ~nP~elllaAla~C 54 (138)
T TIGR03563 41 TNPDEMLLGAAATC 54 (138)
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999986
No 10
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=18.46 E-value=1.5e+02 Score=23.64 Aligned_cols=15 Identities=20% Similarity=0.040 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHhCc
Q 026057 224 ISAFQAFAICLSSFD 238 (244)
Q Consensus 224 lS~~QAFai~Lssfd 238 (244)
.+|.|.|+.||++|-
T Consensus 40 ~nP~ell~aAlasC~ 54 (134)
T TIGR03561 40 TNPEQLFAAGYAACF 54 (134)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998863
Done!