Query 026057
Match_columns 244
No_of_seqs 143 out of 355
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 04:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2E-76 7E-81 535.5 17.0 203 1-244 74-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.7E-73 5.8E-78 509.2 17.3 197 1-238 50-246 (246)
3 3cgm_A SLYD, peptidyl-prolyl C 27.2 79 0.0027 25.3 4.7 24 203-226 100-123 (158)
4 2kr7_A FKBP-type peptidyl-prol 26.1 93 0.0032 24.5 4.9 23 203-225 109-131 (151)
5 1lql_A OSMC, osmotical inducib 25.4 45 0.0015 26.7 2.9 14 224-237 64-77 (166)
6 2ql8_A Putative redox protein; 23.8 52 0.0018 25.4 3.0 15 224-238 46-60 (143)
7 2ypj_A Eccel5A, endoglucanase 22.9 60 0.0021 25.7 3.1 28 183-217 67-94 (155)
8 4ba6_A Endoglucanase CEL5A; ca 22.2 64 0.0022 25.3 3.1 27 184-217 49-75 (144)
9 2bjo_A Organic hydroperoxide r 20.6 70 0.0024 24.3 3.1 14 224-237 42-55 (136)
10 4dt4_A FKBP-type 16 kDa peptid 18.1 1.3E+02 0.0043 24.5 4.2 26 201-226 126-151 (169)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2e-76 Score=535.54 Aligned_cols=203 Identities=41% Similarity=0.749 Sum_probs=150.1
Q ss_pred CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057 1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA 80 (244)
Q Consensus 1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela 80 (244)
+|+||++||||+||++++|++|++++|||||||||+||+|+|||+|.+++.+ .+|.++.+|+|||
T Consensus 74 rK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~ 138 (276)
T 2fim_A 74 RKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELA 138 (276)
T ss_dssp EECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEE
T ss_pred EeccCCCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEE
Confidence 5789999999999999999999999999999999999999999999776422 2455667889999
Q ss_pred EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057 81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA 160 (244)
Q Consensus 81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~ 160 (244)
+|.||+||+|++|||+|+|+||.+. ++|+..|.+ |...++++ +..+. +...+++++|+||+
T Consensus 139 ~V~Ye~nvlg~~gPR~m~v~iP~~~----~~~~~~~~~---p~~~~~~l--l~~~~----------~~~~~~~~~l~nK~ 199 (276)
T 2fim_A 139 AVIYETNVLGFRGPRRMTVIIPGMS----AENERVPIR---PRNASDGL--LVRWQ----------NKTLESLIELHNKP 199 (276)
T ss_dssp EEEEC---------CCEEEEEECBC----TTSCBCCCC---CSSTTCSH--HHHHH----------HTCCTTEEEEEECC
T ss_pred EEEEEecccCCCCCeEEEEEecCcc----cCCCEeccc---CCCccccc--chhhh----------ccCCcceEeeeccC
Confidence 9999999999999999999987642 233333221 11112211 11111 23457899999999
Q ss_pred CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCccc
Q 026057 161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFDTK 240 (244)
Q Consensus 161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd~K 240 (244)
|+|||++|||||||+||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||+|
T Consensus 200 P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~K 272 (276)
T 2fim_A 200 PVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGK 272 (276)
T ss_dssp CEEETTTTEEECCCTTCCCSCCTTCEEEECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC--
T ss_pred CcccccCCEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999975 57899999999999999999999999999999999999999
Q ss_pred cccC
Q 026057 241 IACE 244 (244)
Q Consensus 241 ~aCe 244 (244)
||||
T Consensus 273 lace 276 (276)
T 2fim_A 273 LACE 276 (276)
T ss_dssp ----
T ss_pred cccC
Confidence 9998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.7e-73 Score=509.22 Aligned_cols=197 Identities=41% Similarity=0.736 Sum_probs=156.1
Q ss_pred CcccCCCCccEEEEecCCCCCCCCcceeeeeecceeecEEEEecCCCCCCccccccccccccccccccCccccCcceeEE
Q 026057 1 MKCRRPTCTDYIISLNCDDVSKGSSTYIGRLRSNFLGTKFTIYDGHPPNAEARVTKCRSTRQVNMKQVSPKLLAGNYHVA 80 (244)
Q Consensus 1 ~k~rr~~~SnYiIS~~~~d~sr~s~~yvGKLRSNflGTkF~iyD~g~~~~~a~~~~~~~~r~~~~~q~sp~~~~~~~ela 80 (244)
+|+||++|||||||+|++|++|++++|||||||||+||+|+|||+|.+++.+ .+|.++.+|+|||
T Consensus 50 rk~~~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~ 114 (246)
T 3c5n_A 50 RKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELA 114 (246)
T ss_dssp EECTTCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEE
T ss_pred eeccCCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEE
Confidence 5789999999999999999999999999999999999999999999776422 2455667889999
Q ss_pred EEEEeecccCCCCCceeEEeeccCCCcccCCCCCCCCcccccCCCCCCCCCccccccccccccccccccccceEEEeeCC
Q 026057 81 HISYELNVLGSRGPRRMQCVMDAIPASSIEPGGVAPTQTEFHHSGLDSFPSIPFFRSKSIRAENFQNDQKEGLLVLRNKA 160 (244)
Q Consensus 81 ~I~Ye~nvlg~rGPRkM~v~i~~ip~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~l~nk~ 160 (244)
+|.||+||||++|||+|+|+||.+. ++|+..|.+ |...++++ +..+ .+...+++++|+||+
T Consensus 115 ~v~Ye~n~l~~~gPR~m~v~iP~~~----~~~~~~~~~---p~~~~~~~--~~~~----------~~~~~~~~~~l~nK~ 175 (246)
T 3c5n_A 115 AVIYETNVLGFRGPRRMTVIIPGMS----AENERVPIR---PRNASDGL--LVRW----------QNKTLESLIELHNKP 175 (246)
T ss_dssp EEEECCCCCC---CCCEEEEEECBC----TTSCBCCCC---CSSTTSSH--HHHH----------HHTCCTTEEEEEECC
T ss_pred EEEEEecccCCCCCeEEEEEecCcc----cCCCEeecc---CCCccccc--hhhh----------hccCCcceEEEeccC
Confidence 9999999999999999999987642 233333221 11112221 1111 123457899999999
Q ss_pred CccccCcccEEeccCCcccccccceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEEEEccCCCCHHHHHHHHHHhCc
Q 026057 161 PRWHEQLQCWCLNFNGRVTVASVKNFQLVASLENGVAGQEHENVILQFGKVGKDVFTMDYQYPISAFQAFAICLSSFD 238 (244)
Q Consensus 161 P~wn~~~~~y~LnF~GRv~~aSvKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~~D~~~PlS~~QAFai~Lssfd 238 (244)
|+|||++|||||||+||||+|||||||||+++ ++++||||||||++|+|+|||+|||||||||||||||||
T Consensus 176 P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~-------~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 176 PVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CEEETTTTEEECCCTTSCCBCCTTCEEEEBTT-------BTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred CcccccCCEEEEecCCeeeccccceEEEEecC-------CCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999975 578999999999999999999999999999999999998
No 3
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=27.22 E-value=79 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=19.2
Q ss_pred eEEEEeeeeCCCeEEEEccCCCCH
Q 026057 203 NVILQFGKVGKDVFTMDYQYPISA 226 (244)
Q Consensus 203 ~~vlqfGK~~~~~F~~D~~~PlS~ 226 (244)
.+....=++.++..++||.+||..
T Consensus 100 ~~~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 100 PMPLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEEEECCCEEEEeCCccccC
Confidence 344556788999999999999963
No 4
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=26.13 E-value=93 Score=24.49 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=18.9
Q ss_pred eEEEEeeeeCCCeEEEEccCCCC
Q 026057 203 NVILQFGKVGKDVFTMDYQYPIS 225 (244)
Q Consensus 203 ~~vlqfGK~~~~~F~~D~~~PlS 225 (244)
.+....=+|+++.-++||.|||.
T Consensus 109 ~~~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 109 TIQAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEEEECCCEEEEECCCcCC
Confidence 34555677899999999999996
No 5
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=25.40 E-value=45 Score=26.69 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHhC
Q 026057 224 ISAFQAFAICLSSF 237 (244)
Q Consensus 224 lS~~QAFai~Lssf 237 (244)
.+|.|.|+.||++|
T Consensus 64 ~nP~ELllaalaaC 77 (166)
T 1lql_A 64 FGPLAALLSGLAAC 77 (166)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 59999999999986
No 6
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=23.83 E-value=52 Score=25.43 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHhCc
Q 026057 224 ISAFQAFAICLSSFD 238 (244)
Q Consensus 224 lS~~QAFai~Lssfd 238 (244)
.+|.|.|+.||++|-
T Consensus 46 ~nP~eLllaala~C~ 60 (143)
T 2ql8_A 46 TNPEQLLGLSLSTCL 60 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 599999999999863
No 7
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=22.88 E-value=60 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=21.5
Q ss_pred cceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEE
Q 026057 183 VKNFQLVASLENGVAGQEHENVILQFGKVGKDVFT 217 (244)
Q Consensus 183 vKNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~ 217 (244)
-|||.+-..- ....|||.|.|+.++++.
T Consensus 67 nknfeikvdy-------~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 67 NKNFEIKVDY-------NGADIVLIFARWDKDIWA 94 (155)
T ss_dssp TSCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 3899986542 245799999999998864
No 8
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=22.16 E-value=64 Score=25.27 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=21.1
Q ss_pred ceeEEEecccCCCCCCCCCeEEEEeeeeCCCeEE
Q 026057 184 KNFQLVASLENGVAGQEHENVILQFGKVGKDVFT 217 (244)
Q Consensus 184 KNFQLv~~~~~~~~~~~~~~~vlqfGK~~~~~F~ 217 (244)
|||.+-..- ....|||.|.|+.++++.
T Consensus 49 knfeikvdy-------~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 49 KNFEIKVDY-------NGADIVLIFARWDKDIWA 75 (144)
T ss_dssp SCEEEEEEE-------EESCEEEEEEETTTTEEE
T ss_pred cCeEEEEec-------CCCcEEEEEeecChhhhh
Confidence 899986542 245799999999998864
No 9
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=20.55 E-value=70 Score=24.30 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHhC
Q 026057 224 ISAFQAFAICLSSF 237 (244)
Q Consensus 224 lS~~QAFai~Lssf 237 (244)
.+|.|.|+.||++|
T Consensus 42 ~nP~eLllaala~C 55 (136)
T 2bjo_A 42 TNPEQLFAAGYAAC 55 (136)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999886
No 10
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=18.08 E-value=1.3e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=21.0
Q ss_pred CCeEEEEeeeeCCCeEEEEccCCCCH
Q 026057 201 HENVILQFGKVGKDVFTMDYQYPISA 226 (244)
Q Consensus 201 ~~~~vlqfGK~~~~~F~~D~~~PlS~ 226 (244)
.+.+....=+|+++.-++||.+||..
T Consensus 126 G~~~~~~V~~v~~~~V~vD~NHPLAG 151 (169)
T 4dt4_A 126 GSEMPGVIREINGDSITVDFNHPLAG 151 (169)
T ss_dssp SCEEEEEEEEEETTEEEEECSCTTTT
T ss_pred CCEEEEEEEEEcCCEEEEeCCCccCC
Confidence 34566667788999999999999963
Done!