BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026059
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
+F C +L + ++ F DF YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 73 LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 132
Query: 60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
GK +KDE D CAIREV EETGFD S +N +EFI+ Q VRLYII G+ DT F
Sbjct: 133 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 192
Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
+T+KEIS+I W L +L + K YMV PFLA LKKWI
Sbjct: 193 RTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 238
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Query: 1 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 59
+F C +L + ++ F DF YK R+PV GAI+LD + ++C+LVKGWK SS W FP+
Sbjct: 68 LFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPK 127
Query: 60 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 119
GK +KDE D CAIREV EETGFD S +N +EFI+ Q VRLYII G+ DT F
Sbjct: 128 GKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFES 187
Query: 120 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167
+T+KEIS+I W L +L + K YMV PFLA LKKWI
Sbjct: 188 RTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 233
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 26 KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
K +PV GA I +E + +LV+G + SWSFPRGK +KDE D C IREV+EE GFD++
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60
Query: 86 KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 145
++ ++FIE+ + ++++I+GV + F PQ + EI +I W ++ +
Sbjct: 61 DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK------T 114
Query: 146 HGVTGLKLYMVAPFLASLKKWISAHK 171
+ +K Y++ + L W+ +
Sbjct: 115 MYKSNIKYYLINSMMRPLSMWLRHQR 140
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 45 ILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR 104
+LV +G ++ P GK N+ E IRE++EETG ++ +L + I F +V
Sbjct: 29 VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-FNAHKVY 87
Query: 105 LYIIAGVRDDTAFAPQTKKEISEIAW 130
L I G P+ + EI IA
Sbjct: 88 LCIAQG-------QPKPQNEIERIAL 106
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 39 ETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
++ E CI+ + K WS+P+GK ++E A+RE+ EETG V
Sbjct: 36 DSIEVCIVHRP-KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPV 80
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
Length = 158
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 31 VTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFDV 84
V +LD+ R +L + +G S W FP GK + E A IRE++EE G V
Sbjct: 31 VVACALLDQD-NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHV 87
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 89
P A+I +E E G G WS P G E IREV EETG V
Sbjct: 22 PSVAAVIKNEQGELLFQYPG--GEYWSLPAGAIEPGETPEEAVIREVWEETGLKVQVKKQ 79
Query: 90 KDEFIEKIF 98
K F K F
Sbjct: 80 KGVFGGKEF 88
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 22 FTSYKVRVPVTGAIILDETYERCILVKGWKG--SSWSFPRGKKNKDEEDHACAIREVQEE 79
F S +V V GA+ DE+ + ++V+ + W FP G +E+ A+REV EE
Sbjct: 20 FQSMSHQVGVAGAV-FDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78
Query: 80 TGFDVSKLLNKDEFIEKIFGQQ---------RVRLYIIAGVRDDTAFAPQTKKEISEIAW 130
TG K EF + +Q + +YII ++ + ++E W
Sbjct: 79 TGI-------KSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEW 131
Query: 131 QRLDELQPASDDV-ISHGVTGLKLY 154
L++L + I+ V L LY
Sbjct: 132 MDLNDLAKTENTTPITSRVARLLLY 156
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 31 VTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFDV 84
VT A ++D R +L + G S W FP GK E A +RE+ EE G D
Sbjct: 10 VTAAALIDPD-GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 41 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 74 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 119
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 41 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 61 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 106
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 41 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 62 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 107
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 41 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 74 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 119
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 41 YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGF 82
YE +LVK ++ G FP G + E A A+RE++EETG+
Sbjct: 76 YECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGY 121
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 30 PVTGAIILDETYER--CILVKGWKGSSWSF----PRGKKNKDEEDHACAIREVQEETGFD 83
PV + +L T ER +LV+ ++ + F P GK ++ E A A RE++EE G +
Sbjct: 40 PVAASFVLPVT-ERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAE 98
Query: 84 VSKLLNKDEF 93
L+ F
Sbjct: 99 AETLIPLPSF 108
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 55 WSFPRGKKNKDEEDHACAIREVQEETG 81
WSFP+G E+ A+REV EETG
Sbjct: 27 WSFPKGNIEPGEKPEETAVREVWEETG 53
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
G ++ + E +L + W FP+G E A+REV EETG LL
Sbjct: 5 AGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 15 IDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 74
+ D+F + T Y+ T A I E ++ +LV+ G WS P G + D+ ++
Sbjct: 56 VKDLFCNETGYQTPKLDTRAAIFQE--DKILLVQENDGL-WSLPGGWCDVDQSVKDNVVK 112
Query: 75 EVQEETGFDV 84
EV+EE G DV
Sbjct: 113 EVKEEAGLDV 122
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 53 SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 86
+SW+ P G N++E +RE +EETG +S+
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGVVISQ 103
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 55 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
W+ P+G E+D A+RE QEE G + +L
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQL 70
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
G ++ + E +L + W FP+G E A+REV E+TG LL
Sbjct: 5 AGGVVFNAKREVLLLRD--RMGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLL 59
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 54 SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 88
+W P+G ++ E+ AIRE++EETG ++++
Sbjct: 39 AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 55 WSFPRGKKN-KDEEDHACAIREVQEETGFDVSK---LLNKDEFIEKIFGQQRVRLYIIAG 110
W P G + E H A RE++EE G S L++ D F + VR+Y+ G
Sbjct: 72 WELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLD--TAPGFSDESVRVYLATG 129
Query: 111 VRD 113
+R+
Sbjct: 130 LRE 132
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 23 TSYKVRVPVTGAIILDE------TYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREV 76
T V + G ++L+E E+ I K W P G E A+RE
Sbjct: 7 THVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREA 66
Query: 77 QEETGFDV 84
EETG V
Sbjct: 67 CEETGLRV 74
>pdb|3SGG|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_2193)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.25 A
Resolution
Length = 536
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 42 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
E V G GSS+ FP + D +D+ + E +++G ++ +L++
Sbjct: 360 EGDYFVAGPSGSSYIFPSKXSDADLDDYLAKLNEYVDKSGLNICNILDQ 408
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 55 WSFPRGKKNKDEEDHACAIREVQEETG 81
W P GK N DE REV EETG
Sbjct: 38 WDLPGGKVNPDESLKEGVAREVWEETG 64
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 55 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
W+ P+G E+D A+R QEE G + +L
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 51 KGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84
+ S ++FP G DE IRE+ EETG +
Sbjct: 34 RWSGYAFPGGHVENDEAFAESVIREIYEETGLTI 67
>pdb|1ID0|A Chain A, Crystal Structure Of The Nucleotide Bond Conformation Of
Phoq Kinase Domain
Length = 152
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 92 EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139
EF+E Q LYI+ V DD P +K+E+ QR+D L+P
Sbjct: 62 EFVEISARQTDEHLYIV--VEDDGPGIPLSKREVIFDRGQRVDTLRPG 107
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 90
VT I++D +++ +L++ + W P GK E RE EETG V K
Sbjct: 6 VTNCIVVD--HDQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELK 63
Query: 91 DEFIEKIFGQQRV----RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 136
F IF + ++ L+ + Q+ + ++ W++ DE+
Sbjct: 64 GIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPE--GKLEWKKKDEV 111
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 55 WSFPRGKKNKDEEDHACAIREVQEETGFDVS 85
W F GK DE +RE++EE G + +
Sbjct: 37 WEFAGGKVEPDESQRQALVRELREELGIEAT 67
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 42 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQ 101
E +L + W+ P+G + E++ AIRE +EE +L ++ E +F +
Sbjct: 19 EFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEA 78
Query: 102 R 102
+
Sbjct: 79 K 79
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 50 WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 87
WK SFP G E AIREV EETG +S +
Sbjct: 35 WKAGH-SFPGGHVEVGEPCATAAIREVFEETGLRLSGV 71
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 15 IDDIFKDFTSYKV-RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAI 73
++ +F T Y+ +V + + +E + + VK W+ P G + A
Sbjct: 54 VEKLFASETGYQTPKVDIRAVVFQNE---KLLFVKEKSDGKWALPGGWADVGYTPTEVAA 110
Query: 74 REVQEETGFDVS--KLL 88
+EV EETG++V KLL
Sbjct: 111 KEVFEETGYEVDHFKLL 127
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 15 IDDIFKDFTSYKV-RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAI 73
++ +F T Y+ +V + + +E + + VK W+ P G + A
Sbjct: 54 VEKLFASETGYQTPKVDIRAVVFQNE---KLLFVKEKSDGKWALPGGWADVGYTPTEVAA 110
Query: 74 REVQEETGFDVS--KLL 88
+EV EETG++V KLL
Sbjct: 111 KEVFEETGYEVDHFKLL 127
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 48 KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ 100
+G+ W+ GK + E A RE+QEE+G V L + + + G+
Sbjct: 45 RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,733,649
Number of Sequences: 62578
Number of extensions: 318360
Number of successful extensions: 870
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 49
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)