Query 026059
Match_columns 244
No_of_seqs 247 out of 1836
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:15:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03672 Dcp2p mRNA decapping e 99.9 8.9E-25 1.9E-29 173.5 12.6 144 29-173 1-144 (145)
2 KOG2937 Decapping enzyme compl 99.9 2.1E-23 4.6E-28 179.8 5.6 240 4-243 57-347 (348)
3 cd04670 Nudix_Hydrolase_12 Mem 99.8 7.8E-19 1.7E-23 135.7 12.4 107 31-138 4-112 (127)
4 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.3E-18 2.9E-23 134.6 13.6 120 30-167 3-128 (129)
5 cd04700 DR1025_like DR1025 fro 99.8 1.5E-18 3.2E-23 137.2 13.0 113 24-139 8-125 (142)
6 cd04680 Nudix_Hydrolase_21 Mem 99.8 9.8E-19 2.1E-23 133.3 11.6 104 31-138 2-107 (120)
7 PLN02325 nudix hydrolase 99.8 3E-18 6.4E-23 135.8 14.6 112 25-138 5-124 (144)
8 cd04679 Nudix_Hydrolase_20 Mem 99.8 2.2E-18 4.7E-23 132.8 12.7 105 31-138 4-114 (125)
9 cd04691 Nudix_Hydrolase_32 Mem 99.8 1.5E-18 3.2E-23 132.6 11.5 101 32-139 3-108 (117)
10 cd04671 Nudix_Hydrolase_13 Mem 99.8 2.4E-18 5.1E-23 132.8 12.4 105 31-138 2-109 (123)
11 PRK15434 GDP-mannose mannosyl 99.8 3.2E-18 7E-23 137.6 13.0 117 18-139 7-137 (159)
12 cd04683 Nudix_Hydrolase_24 Mem 99.8 4.2E-18 9.1E-23 130.1 12.3 103 32-138 3-113 (120)
13 cd03674 Nudix_Hydrolase_1 Memb 99.8 6.5E-18 1.4E-22 132.7 13.3 108 29-138 2-122 (138)
14 cd03675 Nudix_Hydrolase_2 Cont 99.8 9.3E-18 2E-22 130.7 13.9 125 32-171 3-132 (134)
15 cd03673 Ap6A_hydrolase Diadeno 99.8 2.6E-18 5.7E-23 132.7 10.6 107 30-138 2-115 (131)
16 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 3.6E-18 7.8E-23 133.5 10.9 109 29-139 2-115 (137)
17 cd03430 GDPMH GDP-mannose glyc 99.8 6.7E-18 1.4E-22 133.8 12.2 104 31-138 14-131 (144)
18 cd04696 Nudix_Hydrolase_37 Mem 99.8 8.4E-18 1.8E-22 129.6 12.1 105 30-139 3-114 (125)
19 cd04669 Nudix_Hydrolase_11 Mem 99.8 9E-18 2E-22 129.0 12.3 104 32-139 3-114 (121)
20 PRK00241 nudC NADH pyrophospha 99.8 2.5E-18 5.3E-23 148.4 9.5 133 2-140 99-239 (256)
21 cd03671 Ap4A_hydrolase_plant_l 99.8 1.7E-17 3.6E-22 131.8 13.6 109 30-139 4-131 (147)
22 COG1051 ADP-ribose pyrophospha 99.8 4.5E-18 9.7E-23 134.9 10.2 113 23-139 4-122 (145)
23 cd04684 Nudix_Hydrolase_25 Con 99.8 1.4E-17 3.1E-22 128.0 12.6 106 31-139 2-117 (128)
24 PRK09438 nudB dihydroneopterin 99.8 7.7E-18 1.7E-22 133.7 11.2 111 23-139 2-129 (148)
25 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.8E-17 3.8E-22 128.3 12.8 107 31-139 3-121 (128)
26 cd04666 Nudix_Hydrolase_9 Memb 99.8 1.2E-17 2.6E-22 128.7 11.7 106 31-139 2-115 (122)
27 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.5E-17 3.3E-22 128.1 12.1 105 32-138 4-113 (125)
28 cd04511 Nudix_Hydrolase_4 Memb 99.8 9.2E-18 2E-22 130.4 10.9 110 22-138 6-118 (130)
29 cd04681 Nudix_Hydrolase_22 Mem 99.7 1.5E-17 3.2E-22 128.8 11.3 104 31-137 3-113 (130)
30 cd04673 Nudix_Hydrolase_15 Mem 99.7 1.7E-17 3.7E-22 126.7 11.5 102 32-139 3-114 (122)
31 cd04677 Nudix_Hydrolase_18 Mem 99.7 2.1E-17 4.6E-22 128.1 11.8 109 28-139 6-122 (132)
32 cd04688 Nudix_Hydrolase_29 Mem 99.7 3.9E-17 8.4E-22 126.0 12.4 108 29-139 2-118 (126)
33 cd04676 Nudix_Hydrolase_17 Mem 99.7 4.2E-17 9.1E-22 125.2 12.5 107 30-139 3-117 (129)
34 cd04672 Nudix_Hydrolase_14 Mem 99.7 4E-17 8.7E-22 125.5 12.3 107 28-140 2-113 (123)
35 PRK00714 RNA pyrophosphohydrol 99.7 4.5E-17 9.7E-22 130.8 12.8 108 30-138 9-134 (156)
36 cd04682 Nudix_Hydrolase_23 Mem 99.7 2.5E-17 5.4E-22 126.5 10.3 105 30-139 2-114 (122)
37 cd03427 MTH1 MutT homolog-1 (M 99.7 3.8E-17 8.2E-22 127.7 11.2 103 31-139 3-111 (137)
38 cd04690 Nudix_Hydrolase_31 Mem 99.7 2.8E-17 6E-22 125.1 10.2 101 32-138 3-109 (118)
39 cd03429 NADH_pyrophosphatase N 99.7 1.6E-17 3.5E-22 129.5 8.6 104 31-139 2-107 (131)
40 cd04667 Nudix_Hydrolase_10 Mem 99.7 6.6E-17 1.4E-21 122.3 11.0 99 33-140 4-102 (112)
41 PRK11762 nudE adenosine nucleo 99.7 7.1E-17 1.5E-21 133.1 11.7 118 31-151 49-174 (185)
42 cd03428 Ap4A_hydrolase_human_l 99.7 6.5E-17 1.4E-21 125.1 10.3 106 30-139 3-115 (130)
43 cd04693 Nudix_Hydrolase_34 Mem 99.7 3.4E-17 7.3E-22 126.6 8.6 104 31-139 2-113 (127)
44 PRK15472 nucleoside triphospha 99.7 1.3E-16 2.7E-21 125.7 11.9 106 30-139 5-125 (141)
45 PRK15393 NUDIX hydrolase YfcD; 99.7 1.5E-16 3.2E-21 130.6 12.7 129 28-173 36-171 (180)
46 cd04697 Nudix_Hydrolase_38 Mem 99.7 6.5E-17 1.4E-21 125.0 9.8 104 31-139 2-112 (126)
47 PF00293 NUDIX: NUDIX domain; 99.7 1.2E-16 2.7E-21 123.3 10.9 108 29-138 2-118 (134)
48 PRK10729 nudF ADP-ribose pyrop 99.7 1.1E-16 2.5E-21 133.5 11.4 127 28-154 48-189 (202)
49 PRK10546 pyrimidine (deoxy)nuc 99.7 1.5E-16 3.3E-21 123.9 11.4 104 29-139 4-112 (135)
50 cd04686 Nudix_Hydrolase_27 Mem 99.7 1.5E-16 3.2E-21 124.0 11.0 107 31-140 2-120 (131)
51 cd03426 CoAse Coenzyme A pyrop 99.7 7.6E-17 1.6E-21 129.5 9.5 107 31-139 4-118 (157)
52 cd04695 Nudix_Hydrolase_36 Mem 99.7 3.6E-16 7.9E-21 121.6 12.9 95 42-139 14-114 (131)
53 cd04664 Nudix_Hydrolase_7 Memb 99.7 9.7E-17 2.1E-21 124.2 9.3 104 31-138 3-117 (129)
54 cd04699 Nudix_Hydrolase_39 Mem 99.7 1.8E-16 4E-21 122.0 10.8 105 30-139 2-114 (129)
55 TIGR00052 nudix-type nucleosid 99.7 1.3E-16 2.8E-21 131.5 10.2 127 28-154 43-183 (185)
56 cd04661 MRP_L46 Mitochondrial 99.7 3E-16 6.4E-21 122.5 10.5 93 42-138 13-119 (132)
57 PRK10776 nucleoside triphospha 99.7 1E-15 2.2E-20 117.7 13.1 105 29-139 4-113 (129)
58 PRK15009 GDP-mannose pyrophosp 99.7 5.8E-16 1.3E-20 128.1 11.2 127 28-155 44-185 (191)
59 cd02885 IPP_Isomerase Isopente 99.7 6.5E-16 1.4E-20 125.0 11.1 105 29-138 30-147 (165)
60 cd04692 Nudix_Hydrolase_33 Mem 99.7 5.7E-16 1.2E-20 122.5 9.5 108 30-138 3-126 (144)
61 cd03425 MutT_pyrophosphohydrol 99.6 1.8E-15 3.9E-20 115.1 11.6 105 29-139 1-110 (124)
62 TIGR00586 mutt mutator mutT pr 99.6 4.1E-15 8.8E-20 114.5 13.2 105 29-139 4-113 (128)
63 PRK05379 bifunctional nicotina 99.6 4.8E-15 1E-19 133.0 14.1 112 25-139 199-322 (340)
64 PRK03759 isopentenyl-diphospha 99.6 3.6E-15 7.9E-20 122.8 10.9 108 26-138 31-151 (184)
65 cd04694 Nudix_Hydrolase_35 Mem 99.6 4E-15 8.6E-20 117.8 10.6 107 31-138 3-130 (143)
66 cd02883 Nudix_Hydrolase Nudix 99.6 9.4E-15 2E-19 110.2 11.7 105 31-138 2-111 (123)
67 cd04685 Nudix_Hydrolase_26 Mem 99.6 1E-14 2.2E-19 114.0 9.9 108 31-139 2-123 (133)
68 cd04665 Nudix_Hydrolase_8 Memb 99.6 2.6E-14 5.7E-19 109.4 11.6 99 32-136 3-102 (118)
69 cd04674 Nudix_Hydrolase_16 Mem 99.6 6.6E-14 1.4E-18 107.1 13.1 56 28-85 3-61 (118)
70 TIGR02150 IPP_isom_1 isopenten 99.6 4.8E-14 1E-18 113.4 11.4 108 25-139 23-142 (158)
71 cd04662 Nudix_Hydrolase_5 Memb 99.5 6.2E-14 1.4E-18 108.0 11.0 55 31-85 2-65 (126)
72 PRK10707 putative NUDIX hydrol 99.5 6.9E-14 1.5E-18 115.7 11.9 96 42-139 44-146 (190)
73 TIGR02705 nudix_YtkD nucleosid 99.5 1.4E-13 3E-18 110.1 12.7 99 31-138 26-126 (156)
74 PRK08999 hypothetical protein; 99.5 1.2E-13 2.7E-18 122.5 12.6 106 28-139 4-114 (312)
75 cd03676 Nudix_hydrolase_3 Memb 99.5 1.4E-13 3E-18 112.9 11.3 103 35-139 40-158 (180)
76 COG2816 NPY1 NTP pyrophosphohy 99.5 1.3E-14 2.8E-19 124.5 5.1 115 21-141 136-253 (279)
77 cd04663 Nudix_Hydrolase_6 Memb 99.5 1E-12 2.2E-17 101.6 12.5 106 32-138 3-115 (126)
78 KOG3084 NADH pyrophosphatase I 99.4 1.6E-14 3.5E-19 124.4 -0.8 114 22-138 180-297 (345)
79 PLN02709 nudix hydrolase 99.4 2.5E-12 5.5E-17 108.0 11.7 97 42-139 51-155 (222)
80 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 2.7E-12 5.8E-17 105.5 10.4 42 43-84 50-91 (186)
81 PLN03143 nudix hydrolase; Prov 99.4 3E-12 6.6E-17 111.8 9.6 110 30-139 129-265 (291)
82 KOG2839 Diadenosine and diphos 99.3 3.3E-12 7.2E-17 98.9 7.7 110 29-139 9-125 (145)
83 COG0494 MutT NTP pyrophosphohy 99.3 1.2E-11 2.6E-16 95.6 9.7 107 33-139 15-134 (161)
84 PLN02552 isopentenyl-diphospha 99.2 6.4E-11 1.4E-15 101.5 10.2 110 27-139 54-203 (247)
85 PLN02791 Nudix hydrolase homol 99.2 1E-10 2.3E-15 113.6 11.4 111 28-138 31-157 (770)
86 KOG3069 Peroxisomal NUDIX hydr 99.1 6.2E-10 1.3E-14 92.8 8.1 97 42-138 58-162 (246)
87 KOG3041 Nucleoside diphosphate 99.0 2.8E-09 6E-14 86.6 10.1 111 28-138 72-193 (225)
88 cd03431 DNA_Glycosylase_C DNA 98.9 1.7E-08 3.6E-13 76.1 11.0 96 31-139 5-105 (118)
89 KOG0648 Predicted NUDIX hydrol 98.8 1.4E-09 3E-14 94.1 2.8 110 28-138 114-230 (295)
90 PF14815 NUDIX_4: NUDIX domain 98.5 1.7E-06 3.6E-11 65.4 9.5 97 34-139 2-103 (114)
91 COG4119 Predicted NTP pyrophos 98.4 9.6E-07 2.1E-11 67.1 6.6 103 32-138 6-134 (161)
92 COG1443 Idi Isopentenyldiphosp 98.2 2.7E-06 5.7E-11 68.2 5.1 106 29-139 33-153 (185)
93 PLN02839 nudix hydrolase 98.1 1.8E-05 3.9E-10 71.0 9.3 95 42-138 218-326 (372)
94 KOG4195 Transient receptor pot 97.6 5.4E-05 1.2E-09 62.9 3.4 39 43-81 140-178 (275)
95 KOG4432 Uncharacterized NUDIX 97.2 0.00064 1.4E-08 59.0 5.6 113 23-138 20-164 (405)
96 PF13869 NUDIX_2: Nucleotide h 97.2 0.0015 3.3E-08 53.5 7.1 71 13-84 28-99 (188)
97 COG4112 Predicted phosphoester 96.8 0.0093 2E-07 47.5 8.5 100 33-138 65-186 (203)
98 KOG4432 Uncharacterized NUDIX 96.4 0.019 4.1E-07 50.1 8.4 114 27-140 227-377 (405)
99 PRK10880 adenine DNA glycosyla 96.0 0.059 1.3E-06 48.8 9.7 84 42-139 242-331 (350)
100 KOG1689 mRNA cleavage factor I 95.7 0.035 7.7E-07 44.5 6.3 68 14-82 55-123 (221)
101 KOG0142 Isopentenyl pyrophosph 95.1 0.023 5.1E-07 46.8 3.4 109 27-140 50-184 (225)
102 KOG4548 Mitochondrial ribosoma 94.8 0.12 2.7E-06 44.1 7.1 92 43-138 140-246 (263)
103 KOG2937 Decapping enzyme compl 93.6 0.0091 2E-07 52.7 -2.0 83 3-85 209-296 (348)
104 PRK13910 DNA glycosylase MutY; 91.9 1.1 2.5E-05 39.4 8.7 26 33-60 190-218 (289)
105 PF14443 DBC1: DBC1 81.7 2.4 5.2E-05 32.6 4.0 46 43-88 9-62 (126)
106 TIGR01084 mutY A/G-specific ad 80.4 3.3 7.1E-05 36.3 4.9 27 33-60 231-261 (275)
107 COG1194 MutY A/G-specific DNA 78.7 4.7 0.0001 36.3 5.4 35 29-64 235-273 (342)
108 KOG4313 Thiamine pyrophosphoki 77.5 7.4 0.00016 33.5 5.9 93 43-138 149-257 (306)
109 PF07026 DUF1317: Protein of u 51.2 29 0.00062 22.9 3.5 34 44-77 13-46 (60)
110 PF03487 IL13: Interleukin-13; 50.3 14 0.0003 22.4 1.8 24 57-80 13-36 (43)
111 COG4111 Uncharacterized conser 48.0 59 0.0013 28.3 5.9 56 38-97 33-89 (322)
112 PF14044 NETI: NETI protein 31.0 40 0.00087 22.1 1.8 23 61-85 3-25 (57)
113 PF12860 PAS_7: PAS fold 29.9 28 0.0006 25.3 1.1 41 33-74 7-47 (115)
114 PF09505 Dimeth_Pyl: Dimethyla 25.7 40 0.00087 30.3 1.5 24 61-84 408-431 (466)
No 1
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.92 E-value=8.9e-25 Score=173.45 Aligned_cols=144 Identities=53% Similarity=0.987 Sum_probs=106.7
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 108 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~ 108 (244)
++++++|+++++++++||+|+...+.|+||||++|.|||+.+||+||++||||+.+..+.....+.........+++|++
T Consensus 1 ~p~~gaii~~~~~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~ 80 (145)
T cd03672 1 IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIV 80 (145)
T ss_pred CCeeEEEEEeCCCCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEE
Confidence 47889999997656999999877779999999999999999999999999999998764333333333333455677777
Q ss_pred EeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCC
Q 026059 109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 173 (244)
Q Consensus 109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~ 173 (244)
..........+...+|+.++.|++++++.++.... .-++..-.+.++.|++.++++|+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (145)
T cd03672 81 PGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK-IPGLNSNKFFMVIPFIKPLKKWINRQKGK 144 (145)
T ss_pred ecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc-cccccccceEEEhHHHHHHHHHHHHhhcC
Confidence 65544332223345789999999999999853221 12233345667889999999999988653
No 2
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=99.88 E-value=2.1e-23 Score=179.77 Aligned_cols=240 Identities=43% Similarity=0.661 Sum_probs=194.8
Q ss_pred cCccccccccchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCC
Q 026059 4 SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD 83 (244)
Q Consensus 4 ~~~~l~~~~~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~ 83 (244)
.||.+.+|..++++.+.+|..|+.++++.++++++....++||++.++...|.+|.|++..+|+..+||+||+.||||.+
T Consensus 57 ~c~~~~~~~~~~~e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD 136 (348)
T KOG2937|consen 57 QCPLLWPWKNEKDEAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFD 136 (348)
T ss_pred CCccccchhhHHHHHHHhhccccCCCCCchHhhhhhhhhhhheeeceecccccccCccccccchhhhcchhcccchhhcC
Confidence 69999999999999999999999999999999999988899999999977799999999999999999999999999999
Q ss_pred CCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccch-hhhhhhhhhHHH
Q 026059 84 VSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTG-LKLYMVAPFLAS 162 (244)
Q Consensus 84 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a-~~~~~~~p~~~~ 162 (244)
....+.-..++...+..+...+|.+.++..++.+.+....|++.+.|+.++++.........+++.. .+.|++.|++..
T Consensus 137 ~skql~~~e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~v 216 (348)
T KOG2937|consen 137 YSKQLQDNEGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRV 216 (348)
T ss_pred HHHHhccccCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHH
Confidence 9876665666777777888999999888888888888889999999999999965433333444444 688999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCceeEEecccCCccccceeecccccccCC-------------------------------
Q 026059 163 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVAS------------------------------- 211 (244)
Q Consensus 163 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 211 (244)
++.|+.+..-.....+.++.+..++|.+-.+..+..+...+++.-++..
T Consensus 217 lkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~ 296 (348)
T KOG2937|consen 217 LKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFG 296 (348)
T ss_pred HHHHHHhccchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCccc
Confidence 9999999877777788888888888776655433333222222221111
Q ss_pred -------------------CCCCCCCCCCCCcccceeCHHHHHHHHHhccC
Q 026059 212 -------------------DSQPPDTGPGKSFRNFRFDTAAILQAMEAGFC 243 (244)
Q Consensus 212 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
.++-..-.++.+|-++++.-..|||.+..|++
T Consensus 297 s~~~~n~k~s~f~~nt~~~l~~i~n~~~~~s~~~~kk~qs~~lq~~~~~n~ 347 (348)
T KOG2937|consen 297 SYPEKNKKFSRFINNTKVRLYHIKNSKKPDSNVSSKKNQSQILQRIRSGNS 347 (348)
T ss_pred ccchhcccccccccCCcceeeeccccCCCccccccccchhhHHHhhhhccC
Confidence 23333456667788999999999999999986
No 3
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=7.8e-19 Score=135.65 Aligned_cols=107 Identities=23% Similarity=0.324 Sum_probs=71.8
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 108 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~ 108 (244)
.|+++|++++ ++|||++++. .+.|.+|||+++.|||+++||.||++||||+.+.....+..............+|++
T Consensus 4 ~~~~~v~~~~-~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (127)
T cd04670 4 GVGGLVLNEK-NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYFI 82 (127)
T ss_pred EEEEEEEcCC-CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEEE
Confidence 4566777766 4999999877 799999999999999999999999999999988744333211111111112223323
Q ss_pred EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
............+.+|+.++.|++++++..
T Consensus 83 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 83 CRLKPLSFDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEEccCcCcCCCChhhhheeEEEcHHHHhc
Confidence 333221111122457888999999999976
No 4
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.3e-18 Score=134.65 Aligned_cols=120 Identities=23% Similarity=0.372 Sum_probs=85.1
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee--eeCeEEEE
Q 026059 30 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK--IFGQQRVR 104 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~--~~~~~~~~ 104 (244)
.+++++|.+.+ +++||++|.. ++.|.+|||+++.||++.+||.||++||||+++..+..+..+... ....+.+.
T Consensus 3 ~~v~~ii~~~~-~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04678 3 VGVGVFVLNPK-GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVT 81 (129)
T ss_pred eEEEEEEECCC-CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEE
Confidence 34578888876 4999999884 789999999999999999999999999999998765444332221 12334444
Q ss_pred EEEEEeecCCC-CcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHH
Q 026059 105 LYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 167 (244)
Q Consensus 105 ~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l 167 (244)
+|+........ .....+.+|+.+++|++++++.++ .+++.+++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~-----------------~~~~~~~~~~~ 128 (129)
T cd04678 82 IFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV-----------------DPLFLPLKNLF 128 (129)
T ss_pred EEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc-----------------chhhHHHHHHh
Confidence 44444444322 111113567889999999999884 25677777766
No 5
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.79 E-value=1.5e-18 Score=137.18 Aligned_cols=113 Identities=23% Similarity=0.372 Sum_probs=81.8
Q ss_pred cCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eC
Q 026059 24 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FG 99 (244)
Q Consensus 24 ~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~ 99 (244)
++..-..++++++++.++ ++||++++. .+.|++|||++++||++++||.||++||||+.+..+..+..+.... .+
T Consensus 8 ~~~~~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 86 (142)
T cd04700 8 HVEVEARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG 86 (142)
T ss_pred CcceeeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence 345566778888888764 899998765 5899999999999999999999999999999988665554433211 12
Q ss_pred e-EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 100 Q-QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
. ...++|.+...... ..+...+|+.++.|++++++.++
T Consensus 87 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~ 125 (142)
T cd04700 87 VLVLRHVWLAEPEGQT--LAPKFTDEIAEASFFSREDVAQL 125 (142)
T ss_pred cEEEEEEEEEEecCCc--cccCCCCCEEEEEEECHHHhhhc
Confidence 2 23355555443322 22333579999999999999984
No 6
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=9.8e-19 Score=133.32 Aligned_cols=104 Identities=22% Similarity=0.253 Sum_probs=78.9
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeeeee-eCeEEEEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKI-FGQQRVRLYII 108 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~~~-~~~~~~~~~~~ 108 (244)
.+.+++.+.++ ++||++|...+.|.+|||+++.||++++||+||++||||+.+. .+..+..+.... .....+++|.+
T Consensus 2 ~~~~~i~~~~~-~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 80 (120)
T cd04680 2 GARAVVTDADG-RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRA 80 (120)
T ss_pred ceEEEEECCCC-eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEe
Confidence 35677787764 9999998876799999999999999999999999999999988 554444333221 23455667766
Q ss_pred EeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 109 AGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
....... ..+++|+.++.|++++++++
T Consensus 81 ~~~~~~~---~~~~~E~~~~~w~~~~~l~~ 107 (120)
T cd04680 81 RADTQPV---IRPSHEISEARFFPPDALPE 107 (120)
T ss_pred cccCCCc---cCCcccEEEEEEECHHHCcc
Confidence 5544321 33467899999999999987
No 7
>PLN02325 nudix hydrolase
Probab=99.79 E-value=3e-18 Score=135.83 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=76.3
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----ee
Q 026059 25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KI 97 (244)
Q Consensus 25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~ 97 (244)
|+.....++++|.++ ++|||++|.. .+.|.+|||++|.||++.+||+||++||||+.+.....+..+.. ..
T Consensus 5 ~~~p~~~v~~vi~~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~ 82 (144)
T PLN02325 5 EPIPRVAVVVFLLKG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEP 82 (144)
T ss_pred CCCCeEEEEEEEEcC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCC
Confidence 444444556667665 3999999876 58999999999999999999999999999999885443332111 11
Q ss_pred eCeEEEEEEEEEeecCC-CCcCCCCCCceeeEEEEccccccC
Q 026059 98 FGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
...+.+.+|+.....+. ......+.+++.+++|+++++|+.
T Consensus 83 ~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~ 124 (144)
T PLN02325 83 KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE 124 (144)
T ss_pred CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence 22344555544443322 111222345678899999999987
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=2.2e-18 Score=132.80 Aligned_cols=105 Identities=23% Similarity=0.341 Sum_probs=75.0
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee-eCeEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-FGQQRVR 104 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~-~~~~~~~ 104 (244)
.|+++|++.+ +++||++|.+ .+.|.+|||++|.||++++||+||++||||+.+.....+..... .. ..+....
T Consensus 4 ~~~~~i~~~~-~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (125)
T cd04679 4 GCGAAILRDD-GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAP 82 (125)
T ss_pred EEEEEEECCC-CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEEE
Confidence 4577777776 4999999875 58999999999999999999999999999999875443332211 11 1223344
Q ss_pred EEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+|.+....+. ....+.+|+.++.|+++++++.
T Consensus 83 ~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 83 VYLAENFSGE--PRLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred EEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence 5555443332 1223456899999999999986
No 9
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.5e-18 Score=132.63 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=75.0
Q ss_pred EEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEE
Q 026059 32 TGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY 106 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~ 106 (244)
|++++.++ +++||+||.. .+.|++|||++|.||++++||.||++||||+.+..+..+..+.........+++|
T Consensus 3 v~~vi~~~--~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD--DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYY 80 (117)
T ss_pred EEEEEEEC--CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEE
Confidence 44555555 3899999864 5799999999999999999999999999999976555555443322233456666
Q ss_pred EEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+....+. + ..+|+.++.|+++++++..
T Consensus 81 ~~~~~~~~----~-~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 81 VVTFWQGE----I-PAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred EEEEecCC----C-CcccccccEEcCHHHcchh
Confidence 66554432 2 2378899999999999874
No 10
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=2.4e-18 Score=132.81 Aligned_cols=105 Identities=21% Similarity=0.254 Sum_probs=75.9
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI 107 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~ 107 (244)
++++++.+.+ +++||++|.+ .+.|.+|||++|.||++++||.||++||||+.+.....+.... ........+|.
T Consensus 2 ~~~~vv~~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~--~~~~~~~~~f~ 78 (123)
T cd04671 2 IVAAVILNNQ-GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEE--QGGSWFRFVFT 78 (123)
T ss_pred EEEEEEEcCC-CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEc--cCCeEEEEEEE
Confidence 5678888776 4999999875 6899999999999999999999999999999987544332211 12334455666
Q ss_pred EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+....+.......++.|+.+++|+++++++.
T Consensus 79 a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 79 GNITGGDLKTEKEADSESLQARWYSNKDLPL 109 (123)
T ss_pred EEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence 6554433222222356788999999999953
No 11
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.78 E-value=3.2e-18 Score=137.64 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=78.4
Q ss_pred HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc----cccc
Q 026059 18 IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK----LLNK 90 (244)
Q Consensus 18 ~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~----l~~~ 90 (244)
.++......+.+ +++++|.++. ++|||+||.. .|.|+||||+||.|||+++||+||++||||+.+.. +..+
T Consensus 7 ~~~~~~~~~~~~-~v~~vI~~~~-g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~ 84 (159)
T PRK15434 7 DFATVVRSTPLI-SLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV 84 (159)
T ss_pred HHHHHhcCCceE-EEEEEEECCC-CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence 344444444444 5677777765 4999999875 58999999999999999999999999999998642 2222
Q ss_pred ceeeee-e-----eC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 91 DEFIEK-I-----FG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 91 ~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
..+... . .. +..+.+|.+....+. ....++|+.+++|+++++++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~---~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 85 WQHFYDDNFSGTDFTTHYVVLGFRLRVAEED---LLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred EEeecccccCCCccceEEEEEEEEEEecCCc---ccCChHHeeEEEEEeHHHhhhc
Confidence 111111 0 11 223444555443322 1223568999999999999873
No 12
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.2e-18 Score=130.11 Aligned_cols=103 Identities=19% Similarity=0.355 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeeeee-eCeEEEE
Q 026059 32 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKI-FGQQRVR 104 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~~~-~~~~~~~ 104 (244)
|.++|.+++ +|||+||.+ ++.|++|||+++.||++.+||+||++||||+.+. .+..+..+.... ...+.+.
T Consensus 3 v~~vi~~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (120)
T cd04683 3 VYVLLRRDD--EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG 80 (120)
T ss_pred EEEEEEECC--EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence 456666653 899999875 5799999999999999999999999999999886 343333322211 1234444
Q ss_pred E-EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 105 L-YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 105 ~-~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+ |.+....+. ....+.+|+.++.|+++++|+.
T Consensus 81 ~~f~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~ 113 (120)
T cd04683 81 LFFTVRRWSGE--PRNCEPDKCAELRWFPLDALPD 113 (120)
T ss_pred EEEEEEeecCc--cccCCCCcEeeEEEEchHHCcc
Confidence 4 444333322 1223457889999999999986
No 13
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.77 E-value=6.5e-18 Score=132.74 Aligned_cols=108 Identities=25% Similarity=0.352 Sum_probs=76.3
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc-----eeee-eee----
Q 026059 29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-----EFIE-KIF---- 98 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~-----~~~~-~~~---- 98 (244)
+.++++++++++++++||++|...+.|.+|||++|+||++++||.||++||||+.+..+.... .+.. ...
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRG 81 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCC
Confidence 356688888876359999998878999999999999999999999999999999876433221 1111 111
Q ss_pred ---CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 99 ---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
..+...+|.+....+.. .+..++|+.++.|++++++..
T Consensus 82 ~~~~~~~~~~y~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 82 VPGHLHLDLRFLAVAPADDV--APPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred CCCcEEEEEEEEEEccCccc--cCCCCCcccccEEEcHHHhhh
Confidence 11233456565433321 112467889999999999965
No 14
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.77 E-value=9.3e-18 Score=130.71 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=81.7
Q ss_pred EEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee--eeeeeCeE-EEEEE
Q 026059 32 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQ-RVRLY 106 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~--~~~~~~~~-~~~~~ 106 (244)
+++++.+++ ++||++|.+ ++.|.+|||++++||++.+||.||++||||+++.....+..+ ........ ...+|
T Consensus 3 v~~ii~~~~--~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f 80 (134)
T cd03675 3 VAAVVERDG--RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF 80 (134)
T ss_pred EEEEEEECC--EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence 456666653 899999886 579999999999999999999999999999998754333322 11111122 22345
Q ss_pred EEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcC
Q 026059 107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 171 (244)
Q Consensus 107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~ 171 (244)
.+.. ..... .....+|+.++.|++++++..+... +......+.+.+|+...+
T Consensus 81 ~~~~-~~~~~-~~~~~~e~~~~~w~~~~el~~~~~~-----------~~~~~~~~~i~~~l~~~~ 132 (134)
T cd03675 81 AAEL-LEHLP-DQPLDSGIVRAHWLTLEEILALAAR-----------LRSPLVLRCIEDYLAGRR 132 (134)
T ss_pred EEEE-CCCCC-CCCCCCCceeeEEEeHHHHHhhhhh-----------hcCchHHHHHHHHHhcCc
Confidence 4433 32211 1123468899999999999885421 111123566777776644
No 15
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.77 E-value=2.6e-18 Score=132.68 Aligned_cols=107 Identities=23% Similarity=0.417 Sum_probs=78.6
Q ss_pred cEEEEEEEeCCC--CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee---eCeEE
Q 026059 30 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI---FGQQR 102 (244)
Q Consensus 30 ~vv~~ii~~~~~--~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~---~~~~~ 102 (244)
.++++|+++.+. ++|||+++.+.+.|.+|||+++.||++++||.||++||||+.+..+..+..+.. .. .....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKT 81 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceE
Confidence 456777776642 499999998888999999999999999999999999999999876554443221 11 23345
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+++|.+....... ....+.|+.++.|++++++.+
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~ 115 (131)
T cd03673 82 VHWWLMRALGGEF--TPQPDEEVDEVRWLPPDEARD 115 (131)
T ss_pred EEEEEEEEcCCCc--ccCCCCcEEEEEEcCHHHHHH
Confidence 5666655443331 112467899999999999986
No 16
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.77 E-value=3.6e-18 Score=133.54 Aligned_cols=109 Identities=22% Similarity=0.373 Sum_probs=81.0
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~ 103 (244)
...+++++++.+ +++||+++.+ ++.|++|||++|.||++.+||+||++||||+.+..+..+..+.. .......+
T Consensus 2 ~~~v~v~~~~~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03424 2 PDAVAVLPYDDD-GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI 80 (137)
T ss_pred CCEEEEEEEcCC-CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence 356788888887 4999998764 46899999999999999999999999999999976665554433 22333456
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+|.+........ ....+.|+.++.|++++++.+.
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~E~~~~~w~~~~el~~~ 115 (137)
T cd03424 81 HLFLAEDLSPGEE-GLLDEGEDIEVVLVPLDEALEL 115 (137)
T ss_pred EEEEEEccccccc-CCCCCCCeeEEEEecHHHHHHH
Confidence 6666655443221 1234678999999999999873
No 17
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.76 E-value=6.7e-18 Score=133.77 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=73.7
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--ccccee--eee------e
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEF--IEK------I 97 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~--~~~------~ 97 (244)
+++++|++.+ +++||+||.. +|.|.+|||+++.|||+.+||+||++||||+.+... ..+..+ ... .
T Consensus 14 ~v~~vI~~~~-g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~ 92 (144)
T cd03430 14 SIDLIVENED-GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD 92 (144)
T ss_pred EEEEEEEeCC-CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCC
Confidence 5677788776 4999999865 789999999999999999999999999999987633 222211 111 1
Q ss_pred eCeEEE-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 98 FGQQRV-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
...+.+ .+|.+....+. ....++|+.+++|++++++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~~~el~~ 131 (144)
T cd03430 93 FSTHYVVLGYVLKLSSNE---LLLPDEQHSEYQWLTSDELLA 131 (144)
T ss_pred CccEEEEEEEEEEEcCCc---ccCCchhccEeEEecHHHHhc
Confidence 122333 34444433322 133467899999999999986
No 18
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=8.4e-18 Score=129.60 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=74.4
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc--eeee-ee---eCeEE
Q 026059 30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIE-KI---FGQQR 102 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~--~~~~-~~---~~~~~ 102 (244)
.+++++|++.+ +++||+|+.. .+.|.+|||+++.|||+.+||.||++||||+.+..+..+. .+.. .. ..+..
T Consensus 3 ~~v~~~i~~~~-~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04696 3 VTVGALIYAPD-GRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFV 81 (125)
T ss_pred cEEEEEEECCC-CCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEE
Confidence 45678888866 4999998765 7899999999999999999999999999999887543322 1111 11 12233
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+..|.+..... ....++|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 82 LFDFFARTDGT----EVTPNEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEEEecCC----cccCCcccceeEEECHHHHhcC
Confidence 34454543221 1233578899999999999874
No 19
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=9e-18 Score=129.02 Aligned_cols=104 Identities=19% Similarity=0.315 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEE
Q 026059 32 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA 109 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (244)
+++++++++ +++||++|.+ .+.|.+|||++|.|||+.+||+||++||||+++.....+..+ .. .....++|.+.
T Consensus 3 ~~~ii~~~~-~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~-~~--~~~~~~~f~~~ 78 (121)
T cd04669 3 ASIVIINDQ-GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIV-NQ--NGRTEHYFLAR 78 (121)
T ss_pred eEEEEEeCC-CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEE-ee--CCcEEEEEEEE
Confidence 355666664 3999999876 478999999999999999999999999999998543222222 11 22345667676
Q ss_pred eecCCCCcC------CCCCCceeeEEEEccccccCC
Q 026059 110 GVRDDTAFA------PQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 110 ~~~~~~~~~------~~~~~E~~~~~W~~~~el~~~ 139 (244)
...+..... ..++.+..++.|+++++|+.+
T Consensus 79 ~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 79 VISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred EECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 655432110 011345678999999999874
No 20
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.76 E-value=2.5e-18 Score=148.37 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=95.2
Q ss_pred CccCccccccccchHH------HHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHH
Q 026059 2 FNSCDVLRPYVAHIDD------IFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAI 73 (244)
Q Consensus 2 f~~~~~l~~~~~~~~~------~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~ 73 (244)
+++||.++......+. .-+....|....++|.++|.++ +++||+++.. .+.|++|||++|+|||+++||.
T Consensus 99 ~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp~~~paViv~V~~~--~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~ 176 (256)
T PRK00241 99 HRFCGYCGHPMHPSKTEWAMLCPHCRERYYPRIAPCIIVAVRRG--DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVA 176 (256)
T ss_pred CccccccCCCCeecCCceeEECCCCCCEECCCCCCEEEEEEEeC--CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhh
Confidence 5788887665332211 2233566776667766666655 4999999876 6899999999999999999999
Q ss_pred HHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059 74 REVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140 (244)
Q Consensus 74 REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 140 (244)
||++||||+++..+..+..... .+.+..+..|.+....++ ...+++|+.++.|+++++++.+.
T Consensus 177 REv~EEtGl~v~~~~~~~s~~~-~~p~~lm~~f~a~~~~~~---~~~~~~Ei~~a~W~~~del~~lp 239 (256)
T PRK00241 177 REVMEESGIKVKNLRYVGSQPW-PFPHSLMLGFHADYDSGE---IVFDPKEIADAQWFRYDELPLLP 239 (256)
T ss_pred hhhhhccCceeeeeEEEEeEee-cCCCeEEEEEEEEecCCc---ccCCcccEEEEEEECHHHCcccC
Confidence 9999999999887665544322 233455666766554333 22345799999999999998753
No 21
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.76 E-value=1.7e-17 Score=131.77 Aligned_cols=109 Identities=24% Similarity=0.465 Sum_probs=76.4
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce------eeeee-----
Q 026059 30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE------FIEKI----- 97 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~------~~~~~----- 97 (244)
.++++++.+.+ +++||++|.. ++.|.+|||++++||++.+||+||++||||+.+.....+.. |....
T Consensus 4 ~~v~~ii~~~~-~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~ 82 (147)
T cd03671 4 PNVGVVLFNED-GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLK 82 (147)
T ss_pred ceEEEEEEeCC-CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhcc
Confidence 46688888876 4999999988 46999999999999999999999999999999764332221 11110
Q ss_pred -----eCeEEEEEEEEEeecCCCCcCCC--CCCceeeEEEEccccccCC
Q 026059 98 -----FGQQRVRLYIIAGVRDDTAFAPQ--TKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 98 -----~~~~~~~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~~el~~~ 139 (244)
+.....++|.+............ +++|+.++.|++++++.+.
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~ 131 (147)
T cd03671 83 IWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL 131 (147)
T ss_pred ccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence 11234455555443311222222 3579999999999999874
No 22
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.76 E-value=4.5e-18 Score=134.93 Aligned_cols=113 Identities=27% Similarity=0.401 Sum_probs=84.4
Q ss_pred hcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-
Q 026059 23 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF- 98 (244)
Q Consensus 23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~- 98 (244)
..|.....++++++...+ ++||+||.+ .|.|.+|||++|.|||+++||.||++||||+++..+..+..+-....
T Consensus 4 ~~~~~p~~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd 81 (145)
T COG1051 4 MGYRTPLVAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRD 81 (145)
T ss_pred ccCCCcceeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCC
Confidence 456667777788888776 899999998 58999999999999999999999999999999776555544433322
Q ss_pred --CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 99 --GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+++...+|++....++ ....+.++...+.|+++++++..
T Consensus 82 ~r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 82 PRGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred CceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHcccc
Confidence 2444555555554333 23333457788999999999974
No 23
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.76 E-value=1.4e-17 Score=128.02 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=75.4
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--ee-e----Ce
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-F----GQ 100 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~~-~----~~ 100 (244)
.+.+||.++ +++||+++.+ ++.|.+|||++|.||++.+||+||++||||+.+..+..+..+.. .. . .+
T Consensus 2 ~~~~ii~~~--~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04684 2 GAYAVIPRD--GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH 79 (128)
T ss_pred eeEEEEEeC--CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence 346677776 3999999987 49999999999999999999999999999998875444433221 11 1 13
Q ss_pred EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
...++|.+....+... .....+|..++.|++++++...
T Consensus 80 ~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 80 HLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEEEEEecCccc-cCCCCCCceeeEEECHHHhhcc
Confidence 3455666655443211 1234567889999999999863
No 24
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.75 E-value=7.7e-18 Score=133.66 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=76.7
Q ss_pred hcCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC--Ccccccc-----ee-
Q 026059 23 TSYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDV--SKLLNKD-----EF- 93 (244)
Q Consensus 23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v--~~l~~~~-----~~- 93 (244)
+.|..++.| ++++++.+ +++||++|.. ++.|++|||++|.|||+.+||+||++||||+.+ ..+..+. .+
T Consensus 2 ~~~~~~~~v-~~vi~~~~-~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 79 (148)
T PRK09438 2 MPYKRPVSV-LVVIYTPD-LGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYE 79 (148)
T ss_pred CCccCceEE-EEEEEeCC-CeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccc
Confidence 456666654 66666665 3899998876 689999999999999999999999999999988 3322111 01
Q ss_pred -e-------eeeeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 94 -I-------EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 94 -~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
. .....+...++|.+....+. .+ ..+|+.++.|++++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~-~~~E~~~~~W~~~~e~~~~ 129 (148)
T PRK09438 80 IFPHWRHRYAPGVTRNTEHWFCLALPHER---PV-VLTEHLAYQWLDAREAAAL 129 (148)
T ss_pred cchhhhhccccccCCceeEEEEEecCCCC---cc-ccCcccceeeCCHHHHHHH
Confidence 0 11112345567766543221 12 2358899999999999874
No 25
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.8e-17 Score=128.31 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=72.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--cccceeee------eeeCe
Q 026059 31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIE------KIFGQ 100 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~~~~~~------~~~~~ 100 (244)
.+++||.+++ ++||++|.+ ++.|.+|||+++.|||+++||.||+.||||+.+... ..+..+.. .....
T Consensus 3 ~a~~iv~~~~--~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04687 3 SAKAVIIKND--KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF 80 (128)
T ss_pred EEEEEEEECC--EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence 3466666653 999999876 578999999999999999999999999999998742 22222221 11122
Q ss_pred E-EEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccCC
Q 026059 101 Q-RVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 101 ~-~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+ ...+|.+....+.. ......+.+..+++|++++++.++
T Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 3 34555555443321 111122345678999999999874
No 26
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.75 E-value=1.2e-17 Score=128.71 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=74.9
Q ss_pred EEEEEEEeCC--CCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-cccceeeeeeeC-----eEE
Q 026059 31 VTGAIILDET--YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFG-----QQR 102 (244)
Q Consensus 31 vv~~ii~~~~--~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~~~~~~~~~~~~-----~~~ 102 (244)
++++|+++.+ .+++||+++.+.+.|.+|||++|.||++.+||+||++||||+.+... ..+..+...... ...
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCE 81 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEE
Confidence 5677776643 35899999877789999999999999999999999999999987655 455544332221 333
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+++|.+.. .+.. ......++.++.|++++++.++
T Consensus 82 ~~~f~~~~-~~~~--~~~~~~e~~~~~W~~~~ea~~~ 115 (122)
T cd04666 82 VAVFPLEV-TEEL--DEWPEMHQRKRKWFSPEEAALL 115 (122)
T ss_pred EEEEEEEE-eccc--cCCcccCceEEEEecHHHHHHh
Confidence 44454443 3221 1223456789999999999763
No 27
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.75 E-value=1.5e-17 Score=128.08 Aligned_cols=105 Identities=17% Similarity=0.233 Sum_probs=72.2
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee--e--ee-CeEEEEEE
Q 026059 32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--K--IF-GQQRVRLY 106 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~--~--~~-~~~~~~~~ 106 (244)
++++|.++ +++||+++...+.|.+|||++|.||++.+||+||++||||+++.....+..+.. . .. .+...++|
T Consensus 4 ~~~vi~~~--~~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f 81 (125)
T cd04689 4 ARAIVRAG--NKVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIF 81 (125)
T ss_pred EEEEEEeC--CEEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEE
Confidence 35555554 389999987778999999999999999999999999999998875444332211 1 11 12334555
Q ss_pred EEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 107 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 107 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.+.............++|+.++.|++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04689 82 AVESSWLASDGPPQADEDHLSFSWVPVSDLSL 113 (125)
T ss_pred EEEcccccccCCccCccceEEEEEccHHHccc
Confidence 55443322111233456789999999999764
No 28
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.75 E-value=9.2e-18 Score=130.43 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=79.0
Q ss_pred hhcCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee
Q 026059 22 FTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF 98 (244)
Q Consensus 22 ~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~ 98 (244)
+..|.+...++++++.++ +++||++|.. .+.|.+|||++|.||++++||.||++||||+.+.....+..+ ....
T Consensus 6 ~~~~~~~~~~v~~ii~~~--~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~-~~~~ 82 (130)
T cd04511 6 YIHYQNPKIIVGCVPEWE--GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY-SVPH 82 (130)
T ss_pred cccCCCCcEEEEEEEecC--CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE-ecCC
Confidence 345666666667777776 3899999864 689999999999999999999999999999987643323222 2222
Q ss_pred CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.....++|.+...... ...+.|..+..|+++++|+.
T Consensus 83 ~~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~~ 118 (130)
T cd04511 83 ISQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIPW 118 (130)
T ss_pred ceEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCCc
Confidence 3344556656554332 22356788999999999973
No 29
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.5e-17 Score=128.83 Aligned_cols=104 Identities=21% Similarity=0.401 Sum_probs=74.7
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----eeeCeEEE
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KIFGQQRV 103 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~~~~~~~ 103 (244)
+|+++|++.++ ++||++|.. .+.|.+|||+++.||++.+||.||++||||+++..+..+..+.. .....+.+
T Consensus 3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd04681 3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130)
T ss_pred eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence 46777888764 999999875 58999999999999999999999999999999876544433211 11222334
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEcccccc
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ 137 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~ 137 (244)
.+|+........ ...+.+|+.++.|+++++|.
T Consensus 82 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 82 DLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence 444444444321 22345789999999999985
No 30
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.7e-17 Score=126.68 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=72.4
Q ss_pred EEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-------eCeE
Q 026059 32 TGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-------FGQQ 101 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-------~~~~ 101 (244)
+++++.++ +++||++|.+ .+.|.+|||+++.||++++||.||++||||+++.....+..+.... ..+.
T Consensus 3 v~~ii~~~--~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd04673 3 VGAVVFRG--GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY 80 (122)
T ss_pred EEEEEEEC--CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence 45666665 3899999876 6889999999999999999999999999999976544333221111 1123
Q ss_pred EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.++.|.+....+. ....+|+.++.|++++++.++
T Consensus 81 ~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 81 VLIDFLCRYLGGE----PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred EEEEEEEEeCCCc----ccCCcccceeEEECHHHHhhC
Confidence 3445555443332 234578899999999999874
No 31
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.1e-17 Score=128.06 Aligned_cols=109 Identities=28% Similarity=0.330 Sum_probs=76.6
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-----ee-eee--C
Q 026059 28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IE-KIF--G 99 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-----~~-~~~--~ 99 (244)
....+++++++.+ +++||++|...+.|.+|||+++.||++.+||.||++||||+.+.....+..+ +. ... .
T Consensus 6 ~~~~~~~~v~~~~-~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (132)
T cd04677 6 ILVGAGVILLNEQ-GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDE 84 (132)
T ss_pred cccceEEEEEeCC-CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcE
Confidence 3445566777776 4999999887789999999999999999999999999999998754333221 11 111 1
Q ss_pred eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.....+|++...... . .....+|+.++.|++++++..+
T Consensus 85 ~~~~~~~~~~~~~~~-~-~~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 85 QYIVTLYYVTKVFGG-K-LVPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred EEEEEEEEEEeccCC-c-ccCCCCceeeEEEEChhHCccc
Confidence 234445555443322 1 1234678899999999999874
No 32
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.9e-17 Score=125.98 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=75.1
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee----ee-eCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KI-FGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~----~~-~~~~~~ 103 (244)
+.++++|+ +++ +|||+++...+.|.+|||+++.||++.+||.||++||||+.+.....+..+.. .. ..+...
T Consensus 2 ~~v~~vi~-~~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (126)
T cd04688 2 VRAAAIII-HNG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIE 78 (126)
T ss_pred eEEEEEEE-ECC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEE
Confidence 34544444 443 89999987778999999999999999999999999999998876544433211 11 123445
Q ss_pred EEEEEEeecCCCCc----CCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAF----APQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~~ 139 (244)
++|.+....+.... ...++.|+.++.|++++++..+
T Consensus 79 ~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 79 FYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred EEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 66666554433211 0124578999999999999864
No 33
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4.2e-17 Score=125.22 Aligned_cols=107 Identities=26% Similarity=0.383 Sum_probs=73.7
Q ss_pred cEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce-----ee-eeeeC--eE
Q 026059 30 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE-----FI-EKIFG--QQ 101 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~-----~~-~~~~~--~~ 101 (244)
+.+++++.+++ +++||++|...+.|.+|||+++.||++++||.||++||||+.+.....+.. +. ....+ .+
T Consensus 3 ~~v~~ii~~~~-~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04676 3 PGVTAVVRDDE-GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVRQ 81 (129)
T ss_pred ceEEEEEECCC-CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcEE
Confidence 45677777776 499999998889999999999999999999999999999998764322110 11 11111 23
Q ss_pred EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+.+++........ ......|..++.|++++++..+
T Consensus 82 ~~~~~~~~~~~~~~--~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 82 YLDITFRCRVVGGE--LRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEEEEEEEEeeCCe--ecCCCCceeEEEEEChhhCccc
Confidence 34433333332221 1124577889999999999874
No 34
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=4e-17 Score=125.52 Aligned_cols=107 Identities=26% Similarity=0.353 Sum_probs=71.4
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee--eee---eCeEE
Q 026059 28 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI---FGQQR 102 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~--~~~---~~~~~ 102 (244)
++.| +++|+++ +++||+++...+.|.+|||+++.||++.+||.||++||||+.+.....+..+. ... ...+.
T Consensus 2 ~~~v-~~~i~~~--~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd04672 2 KVDV-RAAIFKD--GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQV 78 (123)
T ss_pred cceE-EEEEEEC--CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEE
Confidence 4455 4455555 39999999888999999999999999999999999999999874322111111 111 11223
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 140 (244)
+.+++.+..... .....+|..++.|++++++.++.
T Consensus 79 ~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 79 YKLFFLCEILGG---EFKPNIETSEVGFFALDDLPPLS 113 (123)
T ss_pred EEEEEEEEecCC---cccCCCceeeeEEECHHHCcccc
Confidence 333333333322 12234788999999999998753
No 35
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.73 E-value=4.5e-17 Score=130.77 Aligned_cols=108 Identities=20% Similarity=0.365 Sum_probs=76.1
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee---e-----------
Q 026059 30 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---I----------- 94 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~---~----------- 94 (244)
.++++++++.++ ++||+||.. ++.|++|||+++.||++++||.||++||||+.+..+..+..+ .
T Consensus 9 ~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~ 87 (156)
T PRK00714 9 PNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVRR 87 (156)
T ss_pred CeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhhc
Confidence 356777888764 999999977 589999999999999999999999999999988644333221 0
Q ss_pred -eeeeCeEEEEEEEEEeecCCCCc--CCCCCCceeeEEEEccccccC
Q 026059 95 -EKIFGQQRVRLYIIAGVRDDTAF--APQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~ 138 (244)
...+.....++|.+......... .+.+++|+.+++|++++++++
T Consensus 88 ~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~ 134 (156)
T PRK00714 88 SKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLD 134 (156)
T ss_pred cCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHH
Confidence 00111223456665553322211 122356999999999999987
No 36
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.5e-17 Score=126.51 Aligned_cols=105 Identities=16% Similarity=0.259 Sum_probs=75.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeeeeCeE
Q 026059 30 PVTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQ 101 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~~~~~ 101 (244)
.|+++++.++ +++||++|.. .|.|.+|||+++.||++++||.||++||||+.+.. +.....+.. .....
T Consensus 2 ~v~~~~~~~~--g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~~~~~ 78 (122)
T cd04682 2 GVALALLIGD--GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS-ASPPG 78 (122)
T ss_pred ceEEEEEEcC--CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc-CCCCc
Confidence 3555666655 4999999864 48999999999999999999999999999999863 222222221 12344
Q ss_pred EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
..++|.+...... ......+|+.++.|++++++...
T Consensus 79 ~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 79 TEHVFVVPLTARE--DAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred eEEEEEEEEecCC--CccccCchhheeecccHHHHhhc
Confidence 5666766655432 12345688999999999999764
No 37
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.73 E-value=3.8e-17 Score=127.66 Aligned_cols=103 Identities=25% Similarity=0.373 Sum_probs=74.3
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee--e-eCeEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK--I-FGQQRVR 104 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~--~-~~~~~~~ 104 (244)
++.+++.+++ ++||++|.. .+.|.+|||+++.||++.+||+||++||||+.+..+..+..+... . ......+
T Consensus 3 ~~~~~i~~~~--~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03427 3 TTLCFIKDPD--KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80 (137)
T ss_pred EEEEEEEECC--EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEE
Confidence 5566677763 899999887 689999999999999999999999999999988865444433221 1 1334455
Q ss_pred EEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 105 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+|.+....+. +....|..++.|++++++..+
T Consensus 81 ~f~~~~~~~~----~~~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 81 VFLATEFEGE----PLKESEEGILDWFDIDDLPLL 111 (137)
T ss_pred EEEECCcccc----cCCCCccccceEEcHhhcccc
Confidence 5555443332 222456678999999999863
No 38
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2.8e-17 Score=125.09 Aligned_cols=101 Identities=28% Similarity=0.380 Sum_probs=73.7
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeee--e--CeEEEEE
Q 026059 32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKI--F--GQQRVRL 105 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~--~--~~~~~~~ 105 (244)
+++++.+.++ ++||+++...+.|.+|||++++||++++||.||++||||+.+.. +..+..+.... . .....++
T Consensus 3 ~~~~v~~~~~-~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T cd04690 3 AAALILVRDG-RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATV 81 (118)
T ss_pred EEEEEEecCC-eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEE
Confidence 3455555553 99999988788999999999999999999999999999998876 65555443321 1 1234555
Q ss_pred EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
|.+.... .....+|+.++.|++++++..
T Consensus 82 f~~~~~~-----~~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 82 YVAELTG-----EPVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEEcccC-----CcCCCchhhccEEecHHHccc
Confidence 5554322 123357889999999999855
No 39
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.72 E-value=1.6e-17 Score=129.45 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=76.3
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 108 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~ 108 (244)
++.+.+.+++ +++||++|.. .+.|.+|||+++.||++.+||.||++||||+.+..+..+..... ...+..+.+|.+
T Consensus 2 ~v~i~l~~~~-~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~~f~~ 79 (131)
T cd03429 2 AVIVLVIDGG-DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW-PFPSSLMLGFTA 79 (131)
T ss_pred eEEEEEEeCC-CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC-CCCceEEEEEEE
Confidence 4556666664 4999999886 78999999999999999999999999999999886655543211 122344555655
Q ss_pred EeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
....+. ....++|+.++.|++++++.+.
T Consensus 80 ~~~~~~---~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 80 EADSGE---IVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEcCCc---ccCCchhhhccEeecHHHHhhc
Confidence 543221 2234678899999999998874
No 40
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.6e-17 Score=122.29 Aligned_cols=99 Identities=30% Similarity=0.433 Sum_probs=71.3
Q ss_pred EEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEEEEEEEEEeec
Q 026059 33 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVR 112 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (244)
++|+.+ + +++||++|. .+.|.+|||+++.||++.+||.||++||||+.+..+..+..+. ......++|.+....
T Consensus 4 ~~i~~~-~-~~vLlv~r~-~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~---~~~~~~~~f~~~~~~ 77 (112)
T cd04667 4 TVICRR-G-GRVLLVRKS-GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVD---GGSTRHHVFVASVPP 77 (112)
T ss_pred EEEEec-C-CEEEEEEcC-CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEe---CCCEEEEEEEEEcCC
Confidence 444444 3 499999986 4899999999999999999999999999999987655444332 123344555554332
Q ss_pred CCCCcCCCCCCceeeEEEEccccccCCC
Q 026059 113 DDTAFAPQTKKEISEIAWQRLDELQPAS 140 (244)
Q Consensus 113 ~~~~~~~~~~~E~~~~~W~~~~el~~~~ 140 (244)
.. ......|+.++.|++++++.+++
T Consensus 78 ~~---~~~~~~e~~~~~W~~~~el~~~~ 102 (112)
T cd04667 78 SA---QPKPSNEIADCRWLSLDALGDLN 102 (112)
T ss_pred cC---CCCCchheeEEEEecHHHhhhcc
Confidence 21 22345788999999999998753
No 41
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.71 E-value=7.1e-17 Score=133.10 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=86.4
Q ss_pred EEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRL 105 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~ 105 (244)
+|+++..+++ +++||+++.+ ...|+||||.+|+||++++||.||++||||+.+..+..+..+.. +......+++
T Consensus 49 ~v~v~~~~~~-~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~ 127 (185)
T PRK11762 49 AVMIVPILDD-DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNI 127 (185)
T ss_pred EEEEEEEeCC-CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEE
Confidence 4455545554 4899999876 56799999999999999999999999999999988777765442 4455677888
Q ss_pred EEEEeecCCCCcCCCCCCceeeEEEEccccccCC--Ccccc-ccccchh
Q 026059 106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL 151 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~ 151 (244)
|++....... ...++.|..++.|++++++.++ ++++. ++++.++
T Consensus 128 f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al 174 (185)
T PRK11762 128 VLAEDLYPER--LEGDEPEPLEVVRWPLADLDELLARPDFSEARSVAAL 174 (185)
T ss_pred EEEEcccccc--CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHH
Confidence 8876554321 1234567789999999999873 34444 5555443
No 42
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.71 E-value=6.5e-17 Score=125.10 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=75.3
Q ss_pred cEEEEEEEeCCCC--EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee---ee--eCeEE
Q 026059 30 PVTGAIILDETYE--RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE---KI--FGQQR 102 (244)
Q Consensus 30 ~vv~~ii~~~~~~--kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~---~~--~~~~~ 102 (244)
..+++|+++.+.+ ++||++++. +.|.+|||+++.|||+.+||.||++||||+.+..+..+..+.. .. .....
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKT 81 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceE
Confidence 4567777665532 699999887 9999999999999999999999999999999886554322211 11 12344
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+++|.+...... . +...+|..++.|++++++.++
T Consensus 82 ~~~f~~~~~~~~-~--~~~~~E~~~~~W~~~~e~~~~ 115 (130)
T cd03428 82 VTYFLAELRPDV-E--VKLSEEHQDYRWLPYEEALKL 115 (130)
T ss_pred EEEEEEEeCCCC-c--cccccceeeEEeecHHHHHHH
Confidence 556655543222 1 222378999999999999873
No 43
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=3.4e-17 Score=126.55 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=71.6
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeeeeeCeEE
Q 026059 31 VTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR 102 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~~~~~~~ 102 (244)
+|.+++++.+ ++|||++|.. +|.|++| ||+++.||++ +||+||++||||+.+.. +..+..+.....+...
T Consensus 2 ~v~v~~~~~~-g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (127)
T cd04693 2 VVHVCIFNSK-GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDD 79 (127)
T ss_pred eEEEEEEeCC-CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEE
Confidence 4566777766 4999998875 4799998 8999999999 99999999999999763 3333333222112233
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+.+|.+...... ...+.+|+.++.|++++++.++
T Consensus 80 ~~~~~~~~~~~~---~~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04693 80 YYLFYADVEIGK---LILQKEEVDEVKFVSKDEIDGL 113 (127)
T ss_pred EEEEEecCcccc---cccCHHHhhhEEEeCHHHHHHH
Confidence 334433322211 1223578899999999999873
No 44
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.71 E-value=1.3e-16 Score=125.66 Aligned_cols=106 Identities=17% Similarity=0.269 Sum_probs=67.5
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc--ccc---cee--eeee
Q 026059 30 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNK---DEF--IEKI 97 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l--~~~---~~~--~~~~ 97 (244)
.++++++.++ +++||+||.. +|.|++|||++|+|||+++||.||++||||+.+... ... ... ....
T Consensus 5 ~~~~~ii~~~--~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 82 (141)
T PRK15472 5 TIVCPLIQND--GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYA 82 (141)
T ss_pred eEEEEEEecC--CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEec
Confidence 3444555554 4999999865 489999999999999999999999999999986421 110 000 0011
Q ss_pred --eCeEEEEEEEEEee-cCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 98 --FGQQRVRLYIIAGV-RDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 98 --~~~~~~~~~~~~~~-~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.......+|.+... .... ....++|+.++.|+++++|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 83 DGRKEEIYMIYLIFDCVSANR--DVKINEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred CCCceeEEEEEEEEEeecCCC--cccCChhhheEEEccHHHhccc
Confidence 11122223222111 1111 1223578999999999999885
No 45
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.71 E-value=1.5e-16 Score=130.64 Aligned_cols=129 Identities=17% Similarity=0.240 Sum_probs=87.3
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC-----CCcE-EeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCe
Q 026059 28 RVPVTGAIILDETYERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQ 100 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w-~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~ 100 (244)
.+.++.++|++.+ +++||++|.. +|.| .+|||++++||++.+||+||++||||+.+..+..+..+... ....
T Consensus 36 ~h~~~~v~v~~~~-g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~ 114 (180)
T PRK15393 36 RHRATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCR 114 (180)
T ss_pred ceEEEEEEEECCC-CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCce
Confidence 4566677788876 4999998875 3445 58999999999999999999999999987655444443221 2222
Q ss_pred EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCCccccccccchhhhhhhhhhHHHHHHHHHhcCCC
Q 026059 101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 173 (244)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~a~~~~~~~p~~~~l~~~l~~~~~~ 173 (244)
...++|.+.. .+. .....+|+.++.|++++++.++...+ ....+..+..|+.+....
T Consensus 115 ~~~~~f~~~~-~~~---~~~~~~E~~~~~W~~~~el~~~~~~~------------~~~~~~~l~~~l~~~~~~ 171 (180)
T PRK15393 115 VWGALFSCVS-HGP---FALQEEEVSEVCWMTPEEITARCDEF------------TPDSLKALALWLTRNAKN 171 (180)
T ss_pred EEEEEEEEEe-CCC---CCCChHHeeEEEECCHHHHhhhhhhc------------CccHHHHHHHHHHhhccc
Confidence 2334555433 222 22346789999999999998753221 123457777888776544
No 46
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=6.5e-17 Score=125.05 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=77.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-CeEEE
Q 026059 31 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRV 103 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~-~~~~~ 103 (244)
++.+++++.++ ++||++|.. .|.|++ |||+++.||++++||+||++||||+.+..+..+..+..... .....
T Consensus 2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~ 80 (126)
T cd04697 2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWG 80 (126)
T ss_pred eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEE
Confidence 45677888874 999998875 678999 69999999999999999999999999886666655443222 23334
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
++|.+.. ... . ....+|+.++.|++++++.++
T Consensus 81 ~~f~~~~-~~~--~-~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 81 KVFSCVY-DGP--L-KLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEE-CCC--C-CCCHhHhhheEEcCHHHHHHH
Confidence 5665543 222 1 234578899999999999873
No 47
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.70 E-value=1.2e-16 Score=123.26 Aligned_cols=108 Identities=30% Similarity=0.415 Sum_probs=78.7
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCC-----CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--eC--
Q 026059 29 VPVTGAIILDETYERCILVKGWKG-----SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FG-- 99 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~~-----~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--~~-- 99 (244)
..+|++++++.++ ++||++|.+. +.|.+|||+++.||++.+||+||+.||||+.+............. ..
T Consensus 2 ~~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T PF00293_consen 2 RRAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPE 80 (134)
T ss_dssp EEEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESS
T ss_pred CCEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcc
Confidence 3567889999885 9999999983 799999999999999999999999999999985433332222211 11
Q ss_pred eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.....+|.+.......... ....|+.++.|++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~W~~~~el~~ 118 (134)
T PF00293_consen 81 GEIVIFFIAELPSEQSEIQ-PQDEEISEVKWVPPDELLE 118 (134)
T ss_dssp EEEEEEEEEEEEEEESECH-TTTTTEEEEEEEEHHHHHH
T ss_pred cEEEEEEEEEEeCCccccC-CCCccEEEEEEEEHHHhhh
Confidence 2455556555444332222 2234999999999999987
No 48
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.70 E-value=1.1e-16 Score=133.49 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=93.8
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeCC---------CcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceee-eee
Q 026059 28 RVPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKI 97 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~~---------~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~-~~~ 97 (244)
+.++|++|.++++++++||+++.+. -.|++|+|.+|+||++++||.||+.||||+.+..+..+..++ .++
T Consensus 48 ~~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg 127 (202)
T PRK10729 48 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG 127 (202)
T ss_pred cCCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC
Confidence 4456677777764459999999882 369999999999999999999999999999998777666543 355
Q ss_pred eCeEEEEEEEEEeec-C-CCCcCCCCCCceeeEEEEccccccC--CCcccc-ccccchhhhh
Q 026059 98 FGQQRVRLYIIAGVR-D-DTAFAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGLKLY 154 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~~~~ 154 (244)
..+..+++|++.... . .......+..|..++.|++++++.+ .++++. ++++.|+.++
T Consensus 128 ~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~ 189 (202)
T PRK10729 128 GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL 189 (202)
T ss_pred cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 677888999886422 1 1111223457778899999999988 456666 6666665444
No 49
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.70 E-value=1.5e-16 Score=123.91 Aligned_cols=104 Identities=19% Similarity=0.283 Sum_probs=72.0
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~ 103 (244)
+.++++|+.++ +++||+||.. +|.|+||||+++.||++.+||.||+.||||+.+.....+..+.+. ......+
T Consensus 4 ~~~~~~ii~~~--~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T PRK10546 4 IDVVAAIIERD--GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHL 81 (135)
T ss_pred EEEEEEEEecC--CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEE
Confidence 55666666544 4899999865 589999999999999999999999999999997643323222221 1222334
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
++|.+....+. +. ..|..++.|++++++..+
T Consensus 82 ~~~~~~~~~~~----~~-~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 82 HAWHVPDFHGE----LQ-AHEHQALVWCTPEEALRY 112 (135)
T ss_pred EEEEEEEecCc----cc-ccccceeEEcCHHHcccC
Confidence 55555443322 11 346678999999999874
No 50
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.5e-16 Score=123.95 Aligned_cols=107 Identities=22% Similarity=0.239 Sum_probs=69.8
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeee--e---e---eCeE
Q 026059 31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIE--K---I---FGQQ 101 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~--~---~---~~~~ 101 (244)
.+++||.+++ +|||+++.+.+.|.+|||++|.||++.+||.||++||||+.+. ....+..+.. . . ..+.
T Consensus 2 ~~~~ii~~~~--~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04686 2 AVRAIILQGD--KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHM 79 (131)
T ss_pred cEEEEEEECC--EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEE
Confidence 3567777764 8999998877899999999999999999999999999999874 3323322211 0 1 1122
Q ss_pred EEEEEEEEeecCCCCcCCCCCCce---eeEEEEccccccCCC
Q 026059 102 RVRLYIIAGVRDDTAFAPQTKKEI---SEIAWQRLDELQPAS 140 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~E~---~~~~W~~~~el~~~~ 140 (244)
..++|.+........ ...+..|. ..+.|++++++...+
T Consensus 80 ~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 80 ISYYYLCEVDAELGA-QQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred EEEEEEEEEcCCcCC-cccchhhHhcCCCcEEecHHHHHHhh
Confidence 334555544332211 11222222 358999999998744
No 51
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.70 E-value=7.6e-17 Score=129.49 Aligned_cols=107 Identities=19% Similarity=0.144 Sum_probs=74.7
Q ss_pred EEEEEEEeCC-CCEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059 31 VTGAIILDET-YERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR 102 (244)
Q Consensus 31 vv~~ii~~~~-~~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~ 102 (244)
++.+++.+.+ +++|||+||.. +|.|++|||++|.| |++.+||+||++||||+.+..+..+..+.. .......
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4455566544 35999999876 58999999999999 999999999999999999886544433211 1122334
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+++|.+..... ... ..+++|+.++.|++++++.+.
T Consensus 84 v~~~~~~~~~~-~~~-~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 84 VTPVVGLVPPP-LPL-VLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EEEEEEEECCC-CCC-CCCHHHhheeEEEcHHHHhCc
Confidence 45554443222 111 233568999999999999874
No 52
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=3.6e-16 Score=121.58 Aligned_cols=95 Identities=23% Similarity=0.352 Sum_probs=67.6
Q ss_pred CEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc---ceeeeeeeCe-EEEEEEEEEeecCCC
Q 026059 42 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK---DEFIEKIFGQ-QRVRLYIIAGVRDDT 115 (244)
Q Consensus 42 ~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~ 115 (244)
+++||++|.. +|.|.+|||+++.|||+.+||+||++||||+++..+... ..++...... ....+|.+......
T Consensus 14 ~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~- 92 (131)
T cd04695 14 TKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ- 92 (131)
T ss_pred CEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC-
Confidence 5999999988 899999999999999999999999999999998754321 1222211111 22334544432222
Q ss_pred CcCCCCCCceeeEEEEccccccCC
Q 026059 116 AFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 116 ~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.....+|+.++.|++++++.++
T Consensus 93 --~~~~~~E~~~~~W~~~~e~~~~ 114 (131)
T cd04695 93 --EVVLNHEHTEYRWCSFAEALEL 114 (131)
T ss_pred --ccccCchhcccEecCHHHHHHh
Confidence 1223478999999999999874
No 53
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.69 E-value=9.7e-17 Score=124.22 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=74.1
Q ss_pred EEEEEEEeC--CCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-----eee-ee-C
Q 026059 31 VTGAIILDE--TYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IEK-IF-G 99 (244)
Q Consensus 31 vv~~ii~~~--~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-----~~~-~~-~ 99 (244)
++.+++++. + +++||++|.+ ++.|.+|||+++.||++.+||.||++||||+.+..+..+... ... .. .
T Consensus 3 ~~~v~~~~~~~~-~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04664 3 SVLVVPYRLTGE-GRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGR 81 (129)
T ss_pred EEEEEEEEeCCC-CEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCce
Confidence 456777776 5 4999999987 799999999999999999999999999999987543222211 111 11 1
Q ss_pred eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 100 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
....++|.+...... ....++|+.++.|++++++.+
T Consensus 82 ~~~~~~f~~~~~~~~---~~~~~~E~~~~~W~~~~e~~~ 117 (129)
T cd04664 82 VWTEHPFAFHLPSDA---VVTLDWEHDAFEWVPPEEAAA 117 (129)
T ss_pred EEEEeEEEEEcCCCC---cccCCccccccEecCHHHHHH
Confidence 234455655543322 123357889999999999986
No 54
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.8e-16 Score=121.98 Aligned_cols=105 Identities=27% Similarity=0.418 Sum_probs=72.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc-eeeeeeeC-eEE
Q 026059 30 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-EFIEKIFG-QQR 102 (244)
Q Consensus 30 ~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~-~~~~~~~~-~~~ 102 (244)
.+++++|.+++ +++||+||.. +|.|++|||+++.||++.+||.||++||||+.+.....+. .+...... .+.
T Consensus 2 ~~v~~vv~~~~-~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04699 2 VAVAALIVKDV-GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNV 80 (129)
T ss_pred ceEEEEEECCC-CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEE
Confidence 35567777765 4899999875 5789999999999999999999999999999887544322 22222221 233
Q ss_pred E-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 V-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+ .+|.+..... .....+|..++.|++++++..+
T Consensus 81 ~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~ 114 (129)
T cd04699 81 IYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAIL 114 (129)
T ss_pred EEEEEEeeecCC----cccCChhheEEEEecHHHhhhh
Confidence 3 3343333222 1223568889999999998653
No 55
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.69 E-value=1.3e-16 Score=131.46 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=90.9
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC---------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-ee
Q 026059 28 RVPVTGAIILDETYERCILVKGWK---------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KI 97 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~---------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~ 97 (244)
+-+++++++++.+.+++||+++.+ ...|++|||++|.||++++||+||++||||+.+..+..+..+.. +.
T Consensus 43 ~~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g 122 (185)
T TIGR00052 43 RGNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPG 122 (185)
T ss_pred cCCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCC
Confidence 445667777766546999999876 24789999999999999999999999999999987776665433 44
Q ss_pred eCeEEEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccCC--Ccccc-ccccchhhhh
Q 026059 98 FGQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY 154 (244)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~--~~~~~-~~~~~a~~~~ 154 (244)
.....+++|.+....... .....+++|..+..|++++++.++ ++++. ++++.++.++
T Consensus 123 ~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~ 183 (185)
T TIGR00052 123 GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWL 183 (185)
T ss_pred CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 556778888776443211 111223456678999999999873 55555 6665554433
No 56
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.68 E-value=3e-16 Score=122.49 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=67.3
Q ss_pred CEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-c---ccceeee-ee-------eCeEEEEEEE
Q 026059 42 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-L---NKDEFIE-KI-------FGQQRVRLYI 107 (244)
Q Consensus 42 ~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~---~~~~~~~-~~-------~~~~~~~~~~ 107 (244)
+++||+|+.. .+.|.||||++|+|||+.+||+||++||||+.+... . .+..+.. .. .....+++|.
T Consensus 13 ~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 92 (132)
T cd04661 13 TLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFK 92 (132)
T ss_pred cEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEE
Confidence 4899999875 479999999999999999999999999999987631 1 1111111 00 0113456676
Q ss_pred EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+....+. +....|+.+++|+++++|.+
T Consensus 93 ~~~~~g~----~~~~~e~~~~~W~~~~el~~ 119 (132)
T cd04661 93 ARYMSGQ----FELSQNQVDFKWLAKEELQK 119 (132)
T ss_pred EEEecCc----cccCCCcceeEecCHHHHHh
Confidence 6665553 22347889999999999987
No 57
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.68 E-value=1e-15 Score=117.67 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=72.7
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~ 103 (244)
+.++++||.+++ +++||+||.. +|.|+||||++++||++.+||.||+.||||+.+.....+....+. ......+
T Consensus 4 ~~~~~~ii~~~~-~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T PRK10776 4 LQIAVGIIRNPN-NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITL 82 (129)
T ss_pred eEEEEEEEECCC-CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEE
Confidence 455566677765 4999999876 589999999999999999999999999999987643333222211 1222334
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+|.+....+. + ...|..++.|++++++...
T Consensus 83 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 83 WFWLVESWEGE----P-WGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred EEEEEEEECCc----c-CCccCCccEEecHHHCccC
Confidence 45544433221 1 1346678899999999873
No 58
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.67 E-value=5.8e-16 Score=128.13 Aligned_cols=127 Identities=14% Similarity=0.169 Sum_probs=93.8
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeCCC----------cEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee-eee
Q 026059 28 RVPVTGAIILDETYERCILVKGWKGS----------SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-IEK 96 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~~~----------~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~-~~~ 96 (244)
+-++|++++++.+.++++|+++.+.+ .|++|+|.+|.| ++++||+||+.||||+.+..+..+..+ ..+
T Consensus 44 ~~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~sp 122 (191)
T PRK15009 44 RGNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSP 122 (191)
T ss_pred ECCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCC
Confidence 34566777777654699999998833 489999999975 699999999999999999888777664 445
Q ss_pred eeCeEEEEEEEEEeecCC-CCcCCCCCCceeeEEEEccccccC--CCcccc-ccccchhhhhh
Q 026059 97 IFGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP--ASDDVI-SHGVTGLKLYM 155 (244)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~--~~~~~~-~~~~~a~~~~~ 155 (244)
+..+..+++|++...... ......+++|..++.|+|++++.+ .++++. +++++++.+++
T Consensus 123 G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~~ 185 (191)
T PRK15009 123 GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQ 185 (191)
T ss_pred cccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 677888999988753221 111123467888999999999988 356666 66666554443
No 59
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.66 E-value=6.5e-16 Score=125.04 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=75.6
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccccc-ceeee--ee--
Q 026059 29 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEFIE--KI-- 97 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~~~~~--~~-- 97 (244)
+.+++++|++++ +++||+||.. +|.|++| ||+++.||++++||+||++||||+.+..+..+ ..+.. ..
T Consensus 30 ~~~v~v~i~~~~-~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 108 (165)
T cd02885 30 HRAFSVFLFNSK-GRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG 108 (165)
T ss_pred eeEEEEEEEcCC-CcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence 667778888877 4999999875 6889996 89999999999999999999999998754333 22211 11
Q ss_pred --eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 98 --FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 98 --~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
..+....+|.+.... . . ..+.+|+.++.|++++++.+
T Consensus 109 ~~~~~~i~~~f~~~~~~-~--~-~~~~~Ev~~~~w~~~~el~~ 147 (165)
T cd02885 109 GLVEHEIDHVFFARADV-T--L-IPNPDEVSEYRWVSLEDLKE 147 (165)
T ss_pred CceeeEEEEEEEEEeCC-C--C-CCCccceeEEEEECHHHHHH
Confidence 112234555554322 2 1 22467899999999999987
No 60
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=5.7e-16 Score=122.47 Aligned_cols=108 Identities=22% Similarity=0.277 Sum_probs=74.0
Q ss_pred cEEEEEEEeCCC--CEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCC--cccccceeeeee--
Q 026059 30 PVTGAIILDETY--ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKI-- 97 (244)
Q Consensus 30 ~vv~~ii~~~~~--~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~--~l~~~~~~~~~~-- 97 (244)
.++.++|++.++ +++|+++|.. +|.|++ |||+++.||++++||+||++||||+.+. .+..+..+....
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 82 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence 355677777651 4999999876 579999 5999999999999999999999999874 343343322211
Q ss_pred ----eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 98 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
......++|.+......... ...++|+.++.|++++++..
T Consensus 83 ~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~E~~~~~W~~~~el~~ 126 (144)
T cd04692 83 IGKLIDREFHHVYLYELKVPLEEF-TLQKEEVAGVVLIPLDEFAE 126 (144)
T ss_pred cCCCccceEEEEEEEeccCChhhc-CCChhHhheEEEECHHHHHH
Confidence 11234456655543311111 22457899999999999976
No 61
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.65 E-value=1.8e-15 Score=115.07 Aligned_cols=105 Identities=24% Similarity=0.397 Sum_probs=75.9
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~ 103 (244)
+.++.+++.+++ +++||++|.+ .|.|.||||+++.+|++++||.||+.||||+.+.....+..+... ......+
T Consensus 1 ~~~~~~~i~~~~-~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (124)
T cd03425 1 IEVVAAIIIDDD-GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTL 79 (124)
T ss_pred CeEEEEEEECCC-CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEE
Confidence 456677777775 4999999875 689999999999999999999999999999987754444332221 1233445
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+|.+....+. . ...|..++.|++++++...
T Consensus 80 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 80 HVFLVELWSGE----P-QLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEEEEeeeCCC----c-ccccCceEEEeeHHHcccC
Confidence 66655543322 1 1456788999999999873
No 62
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=4.1e-15 Score=114.51 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=71.0
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEE
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 103 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~ 103 (244)
..++++|+.+++ +++||++|.. +|.|+||||+++.||++.+|+.||+.||||+.+.....+....+ .......+
T Consensus 4 ~~~~~~ii~~~~-~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~ 82 (128)
T TIGR00586 4 QQIAVGIIRNEN-GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLW 82 (128)
T ss_pred EEEEEEEEECCC-CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEE
Confidence 344555666665 3899999876 68999999999999999999999999999998764333322222 11222334
Q ss_pred EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
++|.+....+. +. ..+..++.|++++++.+.
T Consensus 83 ~~~~~~~~~~~----~~-~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 83 FWLLERWEGGP----PG-KEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEEEcCCC----cC-cccccccEEeCHHHCCcc
Confidence 44544432221 11 345567899999999874
No 63
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.63 E-value=4.8e-15 Score=133.04 Aligned_cols=112 Identities=19% Similarity=0.318 Sum_probs=75.9
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccc------eeee
Q 026059 25 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD------EFIE 95 (244)
Q Consensus 25 y~~~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~------~~~~ 95 (244)
|.+...++++||..++ +|||++|.. .|.|.+|||++|.||++++||+||++||||+++....... .+..
T Consensus 199 ~~~~~vtv~avv~~~g--~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 199 YPPTFVTVDAVVVQSG--HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred CCCcceEEEEEEEECC--EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 4444455566666653 899999876 6899999999999999999999999999999876322111 1111
Q ss_pred ee---eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 96 KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 96 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+. .+....++|.+....+. ......++|..++.|++++++..+
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~-~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGE-LPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCc-cCccCCCCceeeEEEEEHHHhhhh
Confidence 11 12334555655443222 122234678899999999999763
No 64
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.62 E-value=3.6e-15 Score=122.80 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=75.4
Q ss_pred cccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccccc-ceee--ee
Q 026059 26 KVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEFI--EK 96 (244)
Q Consensus 26 ~~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~~~~--~~ 96 (244)
...+.++++++++++ ++|||+||.. .|.|.+| ||++++||++++||+||+.||||+.+..+..+ ..+. ..
T Consensus 31 ~~~h~av~v~i~~~~-g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~ 109 (184)
T PRK03759 31 TPLHLAFSCYLFDAD-GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRAT 109 (184)
T ss_pred CCeeeEEEEEEEcCC-CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEe
Confidence 345666778888876 4999999754 5678776 89999999999999999999999998744332 1221 11
Q ss_pred --e--eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 97 --I--FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 97 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
. ..+...++|.+... +. ...+.+|+.++.|++++++.+
T Consensus 110 ~~~~~~~~~~~~vf~~~~~-~~---~~~~~~Ev~~~~W~~~~el~~ 151 (184)
T PRK03759 110 DPNGIVENEVCPVFAARVT-SA---LQPNPDEVMDYQWVDPADLLR 151 (184)
T ss_pred cCCCceeeEEEEEEEEEEC-CC---CCCChhHeeeEEEECHHHHHH
Confidence 1 12234456655443 22 123457899999999999987
No 65
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4e-15 Score=117.79 Aligned_cols=107 Identities=16% Similarity=0.289 Sum_probs=71.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc----ccccee--eee---
Q 026059 31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----LNKDEF--IEK--- 96 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l----~~~~~~--~~~--- 96 (244)
++++|+.+.+ +++||+||.. +|.|.+|||+++.||++.+||+||++||||+.+... ..+..+ ...
T Consensus 3 ~v~viv~~~~-~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 3 GVAVLLQSSD-QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred EEEEEEEcCC-CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 4566667776 4999999975 679999999999999999999999999999987642 122111 100
Q ss_pred ---eeCeEEEEEEEEEeecCC---CCc-CCCCCCceeeEEEEccccccC
Q 026059 97 ---IFGQQRVRLYIIAGVRDD---TAF-APQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 97 ---~~~~~~~~~~~~~~~~~~---~~~-~~~~~~E~~~~~W~~~~el~~ 138 (244)
....+...+|+....... ... ....++|+.+++|++++++.+
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~ 130 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKA 130 (143)
T ss_pred CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHH
Confidence 011233344433322211 001 112357999999999999876
No 66
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.61 E-value=9.4e-15 Score=110.21 Aligned_cols=105 Identities=35% Similarity=0.482 Sum_probs=75.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccce--eeee-eeCeEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEK-IFGQQRVRL 105 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~--~~~~-~~~~~~~~~ 105 (244)
++++++.+.+ +++||++|.. .+.|.+|||+++.||++.+||.||+.||+|+.+........ +... ........+
T Consensus 2 ~~~~i~~~~~-~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd02883 2 AVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFV 80 (123)
T ss_pred ceEEEEECCC-CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEE
Confidence 4567777775 4899999988 79999999999999999999999999999998763322222 2211 123455566
Q ss_pred EEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
|.+........ .....|..+..|++++++.+
T Consensus 81 ~~~~~~~~~~~--~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 81 FLARLVGGEPT--LLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred EEEEeCCCCcC--CCCCCccceEEEEcHHHCcc
Confidence 65644333211 13356778899999999987
No 67
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1e-14 Score=114.02 Aligned_cols=108 Identities=26% Similarity=0.371 Sum_probs=71.4
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc-c--e--eeeee-eC
Q 026059 31 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK-D--E--FIEKI-FG 99 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~-~--~--~~~~~-~~ 99 (244)
++.+++++.+ ++|||+++.. .+.|.+|||+++.||++.+||.||++||||+.+..+..+ . . +.... ..
T Consensus 2 ~~~~~i~~~~-g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~ 80 (133)
T cd04685 2 AARVVLLDPD-DRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDG 80 (133)
T ss_pred eEEEEEEcCC-CeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccc
Confidence 4678888877 4999998864 468999999999999999999999999999988432222 1 1 11111 12
Q ss_pred eEEEEEEEEEeecCCCCcCC---CCCCceeeEEEEccccccCC
Q 026059 100 QQRVRLYIIAGVRDDTAFAP---QTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~---~~~~E~~~~~W~~~~el~~~ 139 (244)
.+..++|.+.....+..... ....++..++|+++++|...
T Consensus 81 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 81 RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 23344554443321211111 11234668999999999874
No 68
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.58 E-value=2.6e-14 Score=109.44 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=73.8
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee-eCeEEEEEEEEEe
Q 026059 32 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAG 110 (244)
Q Consensus 32 v~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~-~~~~~~~~~~~~~ 110 (244)
|.+|+.+++ ++||+++. .+.|.+|||+++.||++++||.||++||||+.+..+..+..+.... .......+|.+..
T Consensus 3 v~vi~~~~~--~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~ 79 (118)
T cd04665 3 VLVICFYDD--GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVS 79 (118)
T ss_pred EEEEEEECC--EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEE
Confidence 455555553 89999876 5789999999999999999999999999999998777776554322 2244556676666
Q ss_pred ecCCCCcCCCCCCceeeEEEEccccc
Q 026059 111 VRDDTAFAPQTKKEISEIAWQRLDEL 136 (244)
Q Consensus 111 ~~~~~~~~~~~~~E~~~~~W~~~~el 136 (244)
.... ......|+....|++.+..
T Consensus 80 ~~~~---~~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 80 AQLE---EKASYLETDGPVLFKNEPE 102 (118)
T ss_pred Eecc---cccccccccCcEEeccCCc
Confidence 5543 1234689999999986654
No 69
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=6.6e-14 Score=107.14 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=45.5
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC---CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC
Q 026059 28 RVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~---~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~ 85 (244)
.++++++|+...+ ++||++|.. .+.|.||||++|.||++.+||.||+.||||+.+.
T Consensus 3 p~~~av~vl~~~~--~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~ 61 (118)
T cd04674 3 PLPVVVALLPVDD--GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61 (118)
T ss_pred CcEEEEEEEEECC--CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence 4556666665555 466666654 5899999999999999999999999999999876
No 70
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.55 E-value=4.8e-14 Score=113.38 Aligned_cols=108 Identities=17% Similarity=0.301 Sum_probs=75.1
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCCHHHHHHHHHHhhcCCCCCccc--ccce--ee
Q 026059 25 YKVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLL--NKDE--FI 94 (244)
Q Consensus 25 y~~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs~~eaa~REl~EEtGl~v~~l~--~~~~--~~ 94 (244)
....+.+++++|++.+ +++||+||.. .|.|++| ||+++.|| .+||+||++||||+.+..+. .+.. +.
T Consensus 23 ~g~~h~~v~v~v~~~~-g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~ 99 (158)
T TIGR02150 23 ETPLHRAFSVFLFNEE-GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYR 99 (158)
T ss_pred CCCeEEEEEEEEEcCC-CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEE
Confidence 4556667788888876 4999999876 5999997 79999999 49999999999999887542 2222 21
Q ss_pred ee-eeC-eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 95 EK-IFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 95 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.. ..+ .....+|.+... . ...+ ..+|+.++.|++++++..+
T Consensus 100 ~~~~~g~~~~~~~f~~~~~-~--~~~~-~~~Ev~~~~W~~~~el~~~ 142 (158)
T TIGR02150 100 ARDAWGEHELCPVFFARAP-V--PLNP-NPEEVAEYRWVSLEELKEI 142 (158)
T ss_pred EecCCCcEEEEEEEEEecC-C--cccC-ChhHeeeEEEeCHHHHHHH
Confidence 11 112 234455555432 2 1222 3569999999999999873
No 71
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.54 E-value=6.2e-14 Score=108.03 Aligned_cols=55 Identities=31% Similarity=0.467 Sum_probs=45.2
Q ss_pred EEEEEEEeCC--CCEEEEEEe-------eCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC
Q 026059 31 VTGAIILDET--YERCILVKG-------WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 85 (244)
Q Consensus 31 vv~~ii~~~~--~~kvLLvkr-------~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~ 85 (244)
++|+|+++.+ ..+|||+++ ...+.|++|||+++.||++.+||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 3566776433 237999985 236899999999999999999999999999999875
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.54 E-value=6.9e-14 Score=115.70 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=67.7
Q ss_pred CEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEEEEEEeecCC
Q 026059 42 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVRDD 114 (244)
Q Consensus 42 ~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 114 (244)
+++|+++|.. .|.|+||||++|++ |++++||+||++||||+.+..+..+..+.. .......++.+.+.....
T Consensus 44 ~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~- 122 (190)
T PRK10707 44 PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGIIPPD- 122 (190)
T ss_pred CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEECCC-
Confidence 4899998664 68899999999974 689999999999999999987766665432 122223333343322221
Q ss_pred CCcCCCCCCceeeEEEEccccccCC
Q 026059 115 TAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 115 ~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.. ...+.+|+.++.|++++++.+.
T Consensus 123 ~~-~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 123 LP-YRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred CC-CCCChhhhheEEEEeHHHHhCc
Confidence 11 2234678999999999999874
No 73
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.54 E-value=1.4e-13 Score=110.10 Aligned_cols=99 Identities=23% Similarity=0.198 Sum_probs=73.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYIIA 109 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~~ 109 (244)
.|.+|...++ ++||+++.+ ..|++|||++|+||++++||.||++||||+.+..+..+..+... .......++|.+.
T Consensus 26 ~V~ii~~~~~--~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~ 102 (156)
T TIGR02705 26 HVLVIPRYKD--QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAE 102 (156)
T ss_pred EEEEEEEECC--EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEE
Confidence 4445545543 899998764 45999999999999999999999999999998887777664432 2345567777776
Q ss_pred eecCCCCcCCCCCCceeeEE-EEccccccC
Q 026059 110 GVRDDTAFAPQTKKEISEIA-WQRLDELQP 138 (244)
Q Consensus 110 ~~~~~~~~~~~~~~E~~~~~-W~~~~el~~ 138 (244)
..... + .+|..+.. +++++++++
T Consensus 103 ~~~~~----~--~~e~~E~~~~~~~~~~~~ 126 (156)
T TIGR02705 103 VSALE----S--KDDYLETKGPVLLQEIPD 126 (156)
T ss_pred Eeccc----c--CCCceeeEeEEEHHHHHH
Confidence 65332 1 25556666 799998876
No 74
>PRK08999 hypothetical protein; Provisional
Probab=99.52 E-value=1.2e-13 Score=122.45 Aligned_cols=106 Identities=26% Similarity=0.382 Sum_probs=75.8
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEE
Q 026059 28 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR 102 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~ 102 (244)
.+.++++++.+.+ +++||+||.. .|.|+||||+++.||++.+||.||++||||+.+.....+....+ .......
T Consensus 4 ~~~~~~~vi~~~~-~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~ 82 (312)
T PRK08999 4 RIHVAAGVIRDAD-GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVR 82 (312)
T ss_pred eeEEEEEEEECCC-CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEE
Confidence 3455566666664 4899999875 68999999999999999999999999999998765433332222 1233445
Q ss_pred EEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 103 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+++|.+....+. + ...|..++.|++++++.++
T Consensus 83 i~~y~~~~~~~~----~-~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 83 LDVRRVTAWQGE----P-HGREGQPLAWVAPDELAVY 114 (312)
T ss_pred EEEEEEEEecCc----c-cCccCCccEEecHHHcccC
Confidence 667766554332 1 2456678899999999874
No 75
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.51 E-value=1.4e-13 Score=112.92 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=70.9
Q ss_pred EEEeCC-CCEEEEEEeeC-----CCcE-EeCeeecCCCCCHHHHHHHHHHhhcCCCCCccc---ccc--eeeee----ee
Q 026059 35 IILDET-YERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLL---NKD--EFIEK----IF 98 (244)
Q Consensus 35 ii~~~~-~~kvLLvkr~~-----~~~w-~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~---~~~--~~~~~----~~ 98 (244)
++.+.+ .+++++.||.. +|.| .+|||+++.||++.+||+||++||||+.+..+. .+. .+... ..
T Consensus 40 ~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~ 119 (180)
T cd03676 40 YVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGL 119 (180)
T ss_pred EEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcE
Confidence 344543 34899999887 6999 599999999999999999999999999877532 222 11111 12
Q ss_pred CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+...++|.+.. ..... ...+++|+.++.|++++++.++
T Consensus 120 ~~e~~~~f~~~~-~~~~~-~~~~~~Ev~~~~~~~~~el~~~ 158 (180)
T cd03676 120 QPEVEYVYDLEL-PPDFI-PAPQDGEVESFRLLTIDEVLRA 158 (180)
T ss_pred eeeEEEEEEEEc-CCCCe-eCCCCCcEeEEEEECHHHHHHH
Confidence 334556665542 22211 1234678999999999999873
No 76
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.3e-14 Score=124.50 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=90.5
Q ss_pred HhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeee
Q 026059 21 DFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF 98 (244)
Q Consensus 21 ~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~ 98 (244)
....|+..-|++.+++.+.+ ++||.++.+ .|.|++-+|.||+|||+++|+.||++||+|+++.++.+......+ +
T Consensus 136 g~~~fPR~dP~vIv~v~~~~--~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPWP-f 212 (279)
T COG2816 136 GHEHFPRIDPCVIVAVIRGD--EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPWP-F 212 (279)
T ss_pred CCccCCCCCCeEEEEEecCC--ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCCC-C
Confidence 34678888888888887776 688887766 899999999999999999999999999999999999888765443 3
Q ss_pred CeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEcccc-ccCCCc
Q 026059 99 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDE-LQPASD 141 (244)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e-l~~~~~ 141 (244)
.+..+.-|.....+++ ...+..|+.+++|++.+| ++.+..
T Consensus 213 P~SLMigf~aey~sge---I~~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 213 PHSLMLGFMAEYDSGE---ITPDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred chhhhhhheeeecccc---ccCCcchhhhccccCHhHHhhhcCC
Confidence 3445555656666665 233458999999999999 655554
No 77
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.47 E-value=1e-12 Score=101.57 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=61.6
Q ss_pred EEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeee--eCeEEEEEEEE
Q 026059 32 TGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FGQQRVRLYII 108 (244)
Q Consensus 32 v~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~--~~~~~~~~~~~ 108 (244)
|.+++.++++ .++|+.+... +.|.+|||++++||++.+||.||++||||+.+............. ...+.++++.+
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLC 81 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEE
Confidence 3455554432 3677776554 569999999999999999999999999999873211111111111 12334444444
Q ss_pred Eeec---CCCCcCCC-CCCceeeEEEEccccccC
Q 026059 109 AGVR---DDTAFAPQ-TKKEISEIAWQRLDELQP 138 (244)
Q Consensus 109 ~~~~---~~~~~~~~-~~~E~~~~~W~~~~el~~ 138 (244)
.... ......+. +..+...+.|++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 82 EVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred EecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 3321 11111111 123334566999999965
No 78
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.42 E-value=1.6e-14 Score=124.45 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=81.2
Q ss_pred hhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeC
Q 026059 22 FTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG 99 (244)
Q Consensus 22 ~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~ 99 (244)
-.-|+..-++|..++.+.++.++||.|..+ +|.|.+++|.+|+|||++|||+||++||||++|+.+........+.+.
T Consensus 180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p 259 (345)
T KOG3084|consen 180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMP 259 (345)
T ss_pred CeeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCc
Confidence 345666777888888888888999988666 899999999999999999999999999999999987655443333233
Q ss_pred eEEE-EEEEEEeecCCCCcCCCCCC-ceeeEEEEccccccC
Q 026059 100 QQRV-RLYIIAGVRDDTAFAPQTKK-EISEIAWQRLDELQP 138 (244)
Q Consensus 100 ~~~~-~~~~~~~~~~~~~~~~~~~~-E~~~~~W~~~~el~~ 138 (244)
+..+ ..+.+....+. ...+.+ |..+.+|++-+++.+
T Consensus 260 ~SLMIgc~ala~~~~~---I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 260 QSLMIGCLALAKLNGK---ISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred hHHHHHHHHHHhhCCc---cccCcchhhhhcccccHHHHHH
Confidence 3222 11212121121 122334 888999999888865
No 79
>PLN02709 nudix hydrolase
Probab=99.41 E-value=2.5e-12 Score=108.01 Aligned_cols=97 Identities=24% Similarity=0.157 Sum_probs=65.9
Q ss_pred CEEEEEEeeC-----CCcEEeCeeecCCC-CCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEEEeecC-
Q 026059 42 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYIIAGVRD- 113 (244)
Q Consensus 42 ~kvLLvkr~~-----~~~w~~PgG~ve~g-Es~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~- 113 (244)
.++||++|.. .|.|+||||++|++ +++.+||+||+.||+|+....+..++..... ......++-|.+.....
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 4899999987 79999999999996 5799999999999999988754333221111 11122344443322211
Q ss_pred CCCcCCCCCCceeeEEEEccccccCC
Q 026059 114 DTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 114 ~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.... ..+.+|+.++.|+|+++|.+.
T Consensus 131 ~~~~-~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 131 AFKP-LPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred Cccc-cCChhhhheeEEecHHHHhCC
Confidence 1111 134689999999999999864
No 80
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.39 E-value=2.7e-12 Score=105.48 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=39.4
Q ss_pred EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC
Q 026059 43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84 (244)
Q Consensus 43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v 84 (244)
++|+++|...+.|.+|||++++||++.+||.||+.||||+.+
T Consensus 50 ~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 899999988999999999999999999999999999997754
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.36 E-value=3e-12 Score=111.81 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred cEEEEEEE-eCCC-CEEEEEEeeC----CCcEEeCeeecCC-CCCHHHHHHHHHHhhcCCCCC--cccccc---------
Q 026059 30 PVTGAIIL-DETY-ERCILVKGWK----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKD--------- 91 (244)
Q Consensus 30 ~vv~~ii~-~~~~-~kvLLvkr~~----~~~w~~PgG~ve~-gEs~~eaa~REl~EEtGl~v~--~l~~~~--------- 91 (244)
+.|++++. +.++ .+++|+++.+ .-.|+||||.+|+ +|++.+||+||++||||+.+. .+..+.
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~ 208 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC 208 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence 34555443 4332 2489999888 4589999999997 589999999999999999864 344332
Q ss_pred -eeeeeeeCeEEEEEEEEEeecCCC--------CcCCCCCCceeeEEEEccccccCC
Q 026059 92 -EFIEKIFGQQRVRLYIIAGVRDDT--------AFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.+..++.....+++|.+....... .....+..|..++.|++++++..+
T Consensus 209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~ 265 (291)
T PLN03143 209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRM 265 (291)
T ss_pred eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHH
Confidence 233345566777888766543211 011224567889999999998764
No 82
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.34 E-value=3.3e-12 Score=98.88 Aligned_cols=110 Identities=25% Similarity=0.354 Sum_probs=74.1
Q ss_pred ccEEEEEEEeCCCC--EEEEEEeeC-CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccccee---eeeeeCe-E
Q 026059 29 VPVTGAIILDETYE--RCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---IEKIFGQ-Q 101 (244)
Q Consensus 29 v~vv~~ii~~~~~~--kvLLvkr~~-~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~---~~~~~~~-~ 101 (244)
..++|||.+.-+++ +|||+...+ +..|.+|+|++|+||+..+||.||++||.|+.......+..+ .+..... .
T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~ 88 (145)
T KOG2839|consen 9 RLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKP 88 (145)
T ss_pred EEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccc
Confidence 34667777766655 899999887 889999999999999999999999999999987744323222 2221111 1
Q ss_pred EEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 102 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.-..|.... ......-+....+.....|+.++|..+.
T Consensus 89 k~~~~~l~v-~e~le~wp~~~~~~r~r~W~~ledA~~~ 125 (145)
T KOG2839|consen 89 KGVMYVLAV-TEELEDWPESEHEFREREWLKLEDAIEL 125 (145)
T ss_pred cceeehhhh-hhhcccChhhhcccceeEEeeHHHHHHH
Confidence 122343322 2221112333456889999999998773
No 83
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=95.58 Aligned_cols=107 Identities=29% Similarity=0.458 Sum_probs=65.7
Q ss_pred EEEEEeCCCCEEEEEEeeCCC-cEEeCeeecCCCCCHHH-HHHHHHHhhcCCCCC--cccccceeeeeee-Ce----EEE
Q 026059 33 GAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHA-CAIREVQEETGFDVS--KLLNKDEFIEKIF-GQ----QRV 103 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~~~-~w~~PgG~ve~gEs~~e-aa~REl~EEtGl~v~--~l~~~~~~~~~~~-~~----~~~ 103 (244)
.+++......++|++++...+ .|.+|||+++.||+..+ ||+||++||||+.+. .+..+..+..... .. ...
T Consensus 15 ~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
T COG0494 15 AVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREH 94 (161)
T ss_pred EEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEE
Confidence 343443321489999988865 99999999999999888 999999999999887 4444333322111 11 111
Q ss_pred EEEEEEeecCCCCcCCCC----CCceeeEEEEccccccCC
Q 026059 104 RLYIIAGVRDDTAFAPQT----KKEISEIAWQRLDELQPA 139 (244)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~----~~E~~~~~W~~~~el~~~ 139 (244)
..+............... ..+...+.|++++++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 95 RVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred EEEEeeeccccccccccccCCCcchhhceeeeeHHHcccc
Confidence 111111111111111111 257889999999998773
No 84
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.23 E-value=6.4e-11 Score=101.46 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=70.1
Q ss_pred ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeC-eeecCCCCC-----------------HHHHHHHHHHhhcCCC
Q 026059 27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEE-----------------DHACAIREVQEETGFD 83 (244)
Q Consensus 27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~P-gG~ve~gEs-----------------~~eaa~REl~EEtGl~ 83 (244)
.-+.++.++|++.++ ++||+||.. +|.|+.. +||+..||+ ..+||+||++||||+.
T Consensus 54 l~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~ 132 (247)
T PLN02552 54 LLHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIP 132 (247)
T ss_pred ceEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCC
Confidence 345677888898885 999999987 6799665 455544422 6789999999999998
Q ss_pred CCc-----ccccceeee--eee------C----eEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 84 VSK-----LLNKDEFIE--KIF------G----QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 84 v~~-----l~~~~~~~~--~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
+.. +..+..+.. ... + +...++|+... .+.... ..+.+|+.++.|++++++.++
T Consensus 133 ~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~-~~~~~l-~lq~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 133 AEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRP-VRDVKV-NPNPDEVADVKYVNREELKEM 203 (247)
T ss_pred ccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEe-cCCCcc-cCCHHHhheEEEEeHHHHHHH
Confidence 653 322322111 111 1 23333443322 222222 234689999999999999874
No 85
>PLN02791 Nudix hydrolase homolog
Probab=99.20 E-value=1e-10 Score=113.61 Aligned_cols=111 Identities=15% Similarity=0.248 Sum_probs=77.8
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCc--ccccceeeee---
Q 026059 28 RVPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEK--- 96 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~--l~~~~~~~~~--- 96 (244)
.+.++.+.|++.+.+++||+||.. +|.|++ ||||++.||+..+||+||+.||+|+.+.. +..+..+...
T Consensus 31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~ 110 (770)
T PLN02791 31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVI 110 (770)
T ss_pred ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeec
Confidence 555667888886435999999987 799999 79999999999999999999999998642 3333222110
Q ss_pred e----eCeEEEEEEEEEeecCCC-CcCCCCCCceeeEEEEccccccC
Q 026059 97 I----FGQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 97 ~----~~~~~~~~~~~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
. ..+...++|.+....... .....+++|+.++.|++++++.+
T Consensus 111 ~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~ 157 (770)
T PLN02791 111 NDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKS 157 (770)
T ss_pred cCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHH
Confidence 0 223556677765322211 11123468999999999999975
No 86
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=99.05 E-value=6.2e-10 Score=92.81 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=63.8
Q ss_pred CEEEEEEeeC-----CCcEEeCeeecCC-CCCHHHHHHHHHHhhcCCCCCcccccceeeeeee-CeEEEEEEEEEeecCC
Q 026059 42 ERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRVRLYIIAGVRDD 114 (244)
Q Consensus 42 ~kvLLvkr~~-----~~~w~~PgG~ve~-gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 114 (244)
.+|||.||.+ .|.-+||||+.|. +++..++|.||.+||+|++...+..++....... ....++-+.+......
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~ 137 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK 137 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEeccc
Confidence 4899999887 7999999999998 5678899999999999999875444432211111 1111121211111111
Q ss_pred C-CcCCCCCCceeeEEEEccccccC
Q 026059 115 T-AFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 115 ~-~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
. ........|+.++.|+|++++..
T Consensus 138 ~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 138 ILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ccccccCCchheeeeeeeeHHHHhh
Confidence 0 11223468999999999999986
No 87
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.01 E-value=2.8e-09 Score=86.59 Aligned_cols=111 Identities=22% Similarity=0.268 Sum_probs=71.8
Q ss_pred cccEEEEEE-EeCC-CCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcc-cccceeeeeeeCe
Q 026059 28 RVPVTGAII-LDET-YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQ 100 (244)
Q Consensus 28 ~v~vv~~ii-~~~~-~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l-~~~~~~~~~~~~~ 100 (244)
+++.|+++. +..+ .-.++|+++.+ +-..++|+|-+|.||+.+.||+||++||||+..... .....|..++..+
T Consensus 72 ~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn 151 (225)
T KOG3041|consen 72 RADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTN 151 (225)
T ss_pred cCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCC
Confidence 455555443 2222 23889999888 346789999999999999999999999999985432 2233355555444
Q ss_pred EE--EEEEEEEeecCC-CC-cCCCCCCceeeEEEEccccccC
Q 026059 101 QR--VRLYIIAGVRDD-TA-FAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 101 ~~--~~~~~~~~~~~~-~~-~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.. +.++.+.+...+ +. ....++.|..++.-+++.+|.+
T Consensus 152 ~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~ 193 (225)
T KOG3041|consen 152 CNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWR 193 (225)
T ss_pred CceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHH
Confidence 33 333433332221 11 1223467888999999888876
No 88
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.92 E-value=1.7e-08 Score=76.06 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeee-eeeCeEEEEE
Q 026059 31 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRL 105 (244)
Q Consensus 31 vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~-~~~~~~~~~~ 105 (244)
.+++++.++ +++||.||.. +|.|+||+|.++.+|+.+++..||+.||.++.... +..+.+ ..+....+++
T Consensus 5 ~~~~ii~~~--~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~H~fth~~~~~~~ 79 (118)
T cd03431 5 IAVVVIRND--GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEP---LGTVKHTFTHFRLTLHV 79 (118)
T ss_pred EEEEEEecC--CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCccccc---ceeEEEecCCeEEEEEE
Confidence 344555443 4899999976 89999999999999999999999999987641111 122211 1122344566
Q ss_pred EEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 106 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
|.+....+. .+..+..|++++++...
T Consensus 80 ~~~~~~~~~--------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 80 YLARLEGDL--------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred EEEEEeCCC--------cCccccEEccHHHHhhC
Confidence 665443221 23456799999999873
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=1.4e-09 Score=94.13 Aligned_cols=110 Identities=24% Similarity=0.420 Sum_probs=74.0
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCccccc--ceeeeeeeCe
Q 026059 28 RVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--DEFIEKIFGQ 100 (244)
Q Consensus 28 ~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~--~~~~~~~~~~ 100 (244)
+.-.+++.|.|.+ ++||+++... .|.|-+|+|.|+++|++.++|+||++||||++......+ ..-....+..
T Consensus 114 h~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~ 192 (295)
T KOG0648|consen 114 HRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGL 192 (295)
T ss_pred hheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhc
Confidence 3445578888887 5999998754 799999999999999999999999999999976532222 1111111221
Q ss_pred EEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 101 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.....|+++.+..-.........|+..+.|+++++...
T Consensus 193 ~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~ 230 (295)
T KOG0648|consen 193 IKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVS 230 (295)
T ss_pred ccccceeEEEeeccccccchhHHHHHHHhcccHHHhhc
Confidence 23344445444432222223356788889999997765
No 90
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.46 E-value=1.7e-06 Score=65.43 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=54.8
Q ss_pred EEEEeCCCCEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeee-eeCeEEEEEEEE
Q 026059 34 AIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFGQQRVRLYII 108 (244)
Q Consensus 34 ~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~-~~~~~~~~~~~~ 108 (244)
+++.+.+ +++||.||.. +|.|+||.-.++. +...+.+.+.+.+..|+.+.....+..+.+. .+....+++|.+
T Consensus 2 ~~i~~~~-~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~ 79 (114)
T PF14815_consen 2 LLIIRSQ-GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEV 79 (114)
T ss_dssp EEEEETT-SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEE
T ss_pred EEEEEeC-CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEE
Confidence 4455555 4999999998 8999999988874 3335656667778888876654444443332 233445666766
Q ss_pred EeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 109 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 109 ~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
....... ....+..|++++++.+.
T Consensus 80 ~~~~~~~-------~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 80 EVSADPP-------AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEE-SS-----------TTEEEEEGGGGGGS
T ss_pred EecCCCC-------CCCCCcEEEEHHHHhhC
Confidence 5544321 13567899999999863
No 91
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.39 E-value=9.6e-07 Score=67.05 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=64.1
Q ss_pred EEEEEEeCCC--CEEEEEEeeC-------CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCC-cccccceeeeeeeCeE
Q 026059 32 TGAIILDETY--ERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKIFGQQ 101 (244)
Q Consensus 32 v~~ii~~~~~--~kvLLvkr~~-------~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~-~l~~~~~~~~~~~~~~ 101 (244)
++++++.... -.|||+.--. .|-|++|.|....||.+..||.||..||+|+.+. .+..++++.... ..
T Consensus 6 AGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~G--GK 83 (161)
T COG4119 6 AGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQSG--GK 83 (161)
T ss_pred ceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccCC--Cc
Confidence 4556554322 2666665433 6899999999999999999999999999999886 344444332211 12
Q ss_pred EEEEEEEE----------------eecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 102 RVRLYIIA----------------GVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 102 ~~~~~~~~----------------~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.+..|-+. -..... .-..-.|++...|+++.+...
T Consensus 84 vVta~~veae~Dva~~rSntFe~eWPprSG--~M~~FPEVDRagWF~l~eAr~ 134 (161)
T COG4119 84 VVTAFGVEAELDVADARSNTFELEWPPRSG--KMRKFPEVDRAGWFPLAEART 134 (161)
T ss_pred EEEEEeeeeeeehhhhhcceeeeecCCCCC--ccccCcccccccceecHHHHh
Confidence 22222222 111111 111236788899999888765
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.18 E-value=2.7e-06 Score=68.24 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=73.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCCc---cccccee--eeee
Q 026059 29 VPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK---LLNKDEF--IEKI 97 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~~---l~~~~~~--~~~~ 97 (244)
+.+..+.++|++| ++||.||.. .+.|.- ..||=-+||+..+|++|-+.+|+|+.+.. +..+..+ ....
T Consensus 33 HrAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~ 111 (185)
T COG1443 33 HRAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAAD 111 (185)
T ss_pred HhhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccC
Confidence 4556788999985 999998876 566654 35888899999999999999999999883 2222222 1111
Q ss_pred ----eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccCC
Q 026059 98 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 98 ----~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
..+.+.-++.+.... ... ..++|+.+++|++++++.+.
T Consensus 112 ~~~~~E~Eic~V~~~~~~~---~~~-~npdEV~~~~wv~~e~l~~~ 153 (185)
T COG1443 112 PDGIVENEICPVLAARLDS---ALD-PNPDEVMDYRWVSPEDLKEM 153 (185)
T ss_pred CCCcceeeeeeEEEEeecC---CCC-CChHHhhheeccCHHHHHHh
Confidence 223444455444432 222 34689999999999999873
No 93
>PLN02839 nudix hydrolase
Probab=98.10 E-value=1.8e-05 Score=70.99 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=60.9
Q ss_pred CEEEEEEeeC-----CCcEEe-CeeecCCCCCHHHHHHHHHHhhcCCCCC---cccccceeeee--e-eC--eEEEEEEE
Q 026059 42 ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS---KLLNKDEFIEK--I-FG--QQRVRLYI 107 (244)
Q Consensus 42 ~kvLLvkr~~-----~~~w~~-PgG~ve~gEs~~eaa~REl~EEtGl~v~---~l~~~~~~~~~--~-~~--~~~~~~~~ 107 (244)
.++.+.||.. +|+|+. .+|++..||++.+|++||+.||.|+... .+...+.+... . .+ .....+|-
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YD 297 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYD 297 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEee
Confidence 4777777765 677754 5899999999999999999999999755 23333322111 1 11 11222333
Q ss_pred EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+.. +.+..+.+ .+.|+.++.+++++|+.+
T Consensus 298 LeL-P~df~P~~-qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 298 LEL-PQDFVPKN-QDGEVESFKLIPVAQVAN 326 (372)
T ss_pred eec-CCccccCC-CccceeEEEEecHHHHHH
Confidence 322 22222222 378999999999999976
No 94
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.60 E-value=5.4e-05 Score=62.88 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=36.4
Q ss_pred EEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcC
Q 026059 43 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 81 (244)
Q Consensus 43 kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtG 81 (244)
+++.+||...+.|.+|||.+|+||.+-.+++||..||.=
T Consensus 140 e~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 678889988999999999999999999999999999974
No 95
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.22 E-value=0.00064 Score=59.01 Aligned_cols=113 Identities=15% Similarity=0.240 Sum_probs=76.1
Q ss_pred hcCcccccEEEEEEEeCCCCEEEEEEeeC-----------------------------CCcEEeCeeecCCCCCHHHHHH
Q 026059 23 TSYKVRVPVTGAIILDETYERCILVKGWK-----------------------------GSSWSFPRGKKNKDEEDHACAI 73 (244)
Q Consensus 23 ~~y~~~v~vv~~ii~~~~~~kvLLvkr~~-----------------------------~~~w~~PgG~ve~gEs~~eaa~ 73 (244)
..+..++..|.+++++.+..++|++++.+ +-..++.+|.|+.+-|+.+-|.
T Consensus 20 ~e~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~ 99 (405)
T KOG4432|consen 20 SEFNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIAS 99 (405)
T ss_pred HHHHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhH
Confidence 34455677778899998888999998765 1234677899999999999999
Q ss_pred HHHHhhcCCCCCc--ccccceeeeee-eCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 74 REVQEETGFDVSK--LLNKDEFIEKI-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 74 REl~EEtGl~v~~--l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
.|+.||+|+.+.. ++.+.+|.... ....-.++|++...... ....+..+..-+..+++-..+
T Consensus 100 eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~es~---kis~gggv~~~~~~~~~~a~e 164 (405)
T KOG4432|consen 100 EEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDESM---KISEGGGVITKVYYPVNVARE 164 (405)
T ss_pred HHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecchhh---ccccCCceeeEEEEeehhhHH
Confidence 9999999999873 55555554322 22345678877654322 233344455555555554444
No 96
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.17 E-value=0.0015 Score=53.53 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=51.6
Q ss_pred cchHHHHHHhhcCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCC
Q 026059 13 AHIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 84 (244)
Q Consensus 13 ~~~~~~~~~~~~y~~~v~vv~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v 84 (244)
+....+...|.+.-.+..|.|++++...+ -+|||.|. ....|.+|||.+.+||+..++..|.+.+-.|..-
T Consensus 28 ~rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~-~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 28 ARLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQI-GNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HHHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEE-TTTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred HHHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEec-cCccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 44556666777777788888888776653 37999984 4569999999999999999999999999999764
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.84 E-value=0.0093 Score=47.50 Aligned_cols=100 Identities=21% Similarity=0.302 Sum_probs=61.8
Q ss_pred EEEEEeCCCCEEEEEEeeC-------CCcEEe-CeeecCCCC---CHHH----HHHHHHHhhcCCCCC---cccccceee
Q 026059 33 GAIILDETYERCILVKGWK-------GSSWSF-PRGKKNKDE---EDHA----CAIREVQEETGFDVS---KLLNKDEFI 94 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~-------~~~w~~-PgG~ve~gE---s~~e----aa~REl~EEtGl~v~---~l~~~~~~~ 94 (244)
-++|.+++ +||+-+|-. .+.+++ -|||+..++ +..+ .+.||+.||+++.-. .+..++- +
T Consensus 65 Yvvi~~ed--evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGl-I 141 (203)
T COG4112 65 YVVIMDED--EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGL-I 141 (203)
T ss_pred EEEEecCC--EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeee-e
Confidence 45666665 899998876 456776 489998764 3333 267999999999744 3333331 2
Q ss_pred ee----eeCeEEEEEEEEEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 95 EK----IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 95 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+. ....|+-.+|..+....+.. ....+..++.|+.+.+|..
T Consensus 142 Ndd~neVgkVHiG~lf~~~~k~ndve---vKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 142 NDDTNEVGKVHIGALFLGRGKFNDVE---VKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred cCCCcccceEEEEEEEEeecccccee---eeecceeeeeeeeHHHHHH
Confidence 21 12223444555554443311 1245678899999999876
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.43 E-value=0.019 Score=50.09 Aligned_cols=114 Identities=15% Similarity=0.208 Sum_probs=71.5
Q ss_pred ccccEEEEEEEeCCCCEEEEEEeeC-------------------------------CCcEEeCeeecCCCCCHHHHHHHH
Q 026059 27 VRVPVTGAIILDETYERCILVKGWK-------------------------------GSSWSFPRGKKNKDEEDHACAIRE 75 (244)
Q Consensus 27 ~~v~vv~~ii~~~~~~kvLLvkr~~-------------------------------~~~w~~PgG~ve~gEs~~eaa~RE 75 (244)
..+..+.+|++|-...+++|+|+.+ +-..++.+|.|+..-+..+-|.||
T Consensus 227 k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e 306 (405)
T KOG4432|consen 227 KCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARE 306 (405)
T ss_pred hCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHH
Confidence 3456678888887655777776554 112345578888888999999999
Q ss_pred HHhhcCCCCCc--ccccceeeee-eeCeEEEEEEEEEeecCCCC---cCCCCCCceeeEEEEccccccCCC
Q 026059 76 VQEETGFDVSK--LLNKDEFIEK-IFGQQRVRLYIIAGVRDDTA---FAPQTKKEISEIAWQRLDELQPAS 140 (244)
Q Consensus 76 l~EEtGl~v~~--l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~~ 140 (244)
..||+|+++.. +.....|... +.....-..|++...+.... .-..+.+|..+..-+++++++.+.
T Consensus 307 ~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~ 377 (405)
T KOG4432|consen 307 SVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLY 377 (405)
T ss_pred HHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHH
Confidence 99999999874 5444444432 11112234444443332210 011234678888999999998753
No 99
>PRK10880 adenine DNA glycosylase; Provisional
Probab=95.98 E-value=0.059 Score=48.76 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=43.4
Q ss_pred CEEEEEEeeC----CCcEEeCeeecCCCCCHHHHHHHHHHhhcCCCCCcccccceeeeeeeCeEE--EEEEEEEeecCCC
Q 026059 42 ERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR--VRLYIIAGVRDDT 115 (244)
Q Consensus 42 ~kvLLvkr~~----~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl~v~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 115 (244)
+++||.||.. +|.|+||.. +..+ ..++..|+.|+.......+..+.+ .+.+.. +++|.+......
T Consensus 242 ~~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~H-~fTH~~~~~~~~~~~~~~~~- 312 (350)
T PRK10880 242 DEVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIAADNLTQLTAFRH-TFSHFHLDIVPMWLPVSSFT- 312 (350)
T ss_pred CEEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCchhhhcccCceEE-EEeeEEEEEEEEEEEccccc-
Confidence 4899999876 899999963 2111 245566788875332222222221 122233 334433321110
Q ss_pred CcCCCCCCceeeEEEEccccccCC
Q 026059 116 AFAPQTKKEISEIAWQRLDELQPA 139 (244)
Q Consensus 116 ~~~~~~~~E~~~~~W~~~~el~~~ 139 (244)
.... ..+..|++++++...
T Consensus 313 ---~~~~--~~~~~w~~~~~~~~~ 331 (350)
T PRK10880 313 ---GCMD--EGNGLWYNLAQPPSV 331 (350)
T ss_pred ---cccC--CcCCeEechHHhccc
Confidence 0001 123369999999873
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=95.73 E-value=0.035 Score=44.53 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=51.6
Q ss_pred chHHHHHHhhcCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHHhhcCC
Q 026059 14 HIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 82 (244)
Q Consensus 14 ~~~~~~~~~~~y~~~v~vv~~ii~~~~~-~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~EEtGl 82 (244)
+...|...|++--.+-.|-|++|+.+.. .+|||.|- +...+.+|||.+++||+-.+.+.|-+-|-+|-
T Consensus 55 rf~rmk~ey~k~gmRrsvegvlivheH~lPHvLLLQi-g~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 55 RFARMKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQI-GNTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred HHHHHHHHHHhhhhhheeeeeEEEeecCCCeEEEEee-CCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 3444555566666677777777766542 37888864 36789999999999999999999999999993
No 101
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.05 E-value=0.023 Score=46.82 Aligned_cols=109 Identities=15% Similarity=0.252 Sum_probs=64.7
Q ss_pred ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEe-----Ce---eecCC--CCCHHHHHHHHHHhhcCCCCCc-----
Q 026059 27 VRVPVTGAIILDETYERCILVKGWK-----GSSWSF-----PR---GKKNK--DEEDHACAIREVQEETGFDVSK----- 86 (244)
Q Consensus 27 ~~v~vv~~ii~~~~~~kvLLvkr~~-----~~~w~~-----Pg---G~ve~--gEs~~eaa~REl~EEtGl~v~~----- 86 (244)
.-+.+..+++++.++ ++||+||.. .+.|.- |- |..+. +.....||.|-+.-|+|+....
T Consensus 50 lLHRaFSVFlFns~~-~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee 128 (225)
T KOG0142|consen 50 LLHRAFSVFLFNSKN-ELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEE 128 (225)
T ss_pred hhhheeeEEEecCcc-hHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHH
Confidence 445566788899884 899998875 344421 11 22222 2357889999999999998764
Q ss_pred ccccce--eeeeee---CeEEE-EEEEEEeecCCCCcCCCCCCceeeEEEEccccccCCC
Q 026059 87 LLNKDE--FIEKIF---GQQRV-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 140 (244)
Q Consensus 87 l~~~~~--~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 140 (244)
+..+.. |..... +.+-+ .+.++.. +.... ..++|+.+++|++.++|.++-
T Consensus 129 ~~~ltrihYkA~sdg~wGEhEiDYiL~~~~---~~~~n-PnpnEv~e~ryvs~eelkel~ 184 (225)
T KOG0142|consen 129 FNFLTRIHYKAPSDGIWGEHEIDYILFLVK---DVTLN-PNPNEVSEIRYVSREELKELV 184 (225)
T ss_pred cccceeeeeecCCCCCcccceeeEEEEEec---cCCCC-CChhhhhHhheecHHHHHHHH
Confidence 333332 222221 22222 2222222 22222 236899999999999998843
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=94.79 E-value=0.12 Score=44.06 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=59.7
Q ss_pred EEEEEEee-C-CCcEEeCeeec-CCCCCHHHHHHHHHHhhcCCCCCccc----ccceeeee-e--e-----CeEEEEEEE
Q 026059 43 RCILVKGW-K-GSSWSFPRGKK-NKDEEDHACAIREVQEETGFDVSKLL----NKDEFIEK-I--F-----GQQRVRLYI 107 (244)
Q Consensus 43 kvLLvkr~-~-~~~w~~PgG~v-e~gEs~~eaa~REl~EEtGl~v~~l~----~~~~~~~~-~--~-----~~~~~~~~~ 107 (244)
=+||+++. + .+.|.||.+.. +.++++..+|.|++.+-.|-....+. .++++... . . -...+.+|.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k 219 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK 219 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence 57888855 2 68999999999 99999999999999999997655321 11211110 0 0 012244455
Q ss_pred EEeecCCCCcCCCCCCceeeEEEEccccccC
Q 026059 108 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 138 (244)
Q Consensus 108 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~ 138 (244)
+..+.+.. .......++.|++.++|-+
T Consensus 220 ~~lv~~~~----~kn~n~edfvWvTkdel~e 246 (263)
T KOG4548|consen 220 ASLVANSN----QKNQNKEDFVWVTKDELGE 246 (263)
T ss_pred eeeccccc----hhcccccceEEechHHHhh
Confidence 55554431 1234455699999999987
No 103
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=93.63 E-value=0.0091 Score=52.72 Aligned_cols=83 Identities=27% Similarity=0.580 Sum_probs=69.7
Q ss_pred ccCccc---cccccchHHHHHHhhcCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEeCeeecCCCCCHHHHHHHHHH
Q 026059 3 NSCDVL---RPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQ 77 (244)
Q Consensus 3 ~~~~~l---~~~~~~~~~~~~~~~~y~~~v~vv~~ii~~~~~~kvLLvkr~~--~~~w~~PgG~ve~gEs~~eaa~REl~ 77 (244)
.-||.| ..|+.+.+...+.+..++..++++++++.+-..+....++... +..|.||.|+++.||-...+++|+..
T Consensus 209 ~~~~~l~vlkk~~~k~~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~ 288 (348)
T KOG2937|consen 209 MVCPFLRVLKKWILKADEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTF 288 (348)
T ss_pred ccchHHHHHHHHHHhccchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcC
Confidence 456664 4557888889999999999999998888877666666666555 78999999999999999999999999
Q ss_pred hhcCCCCC
Q 026059 78 EETGFDVS 85 (244)
Q Consensus 78 EEtGl~v~ 85 (244)
||+|....
T Consensus 289 ~e~~f~~~ 296 (348)
T KOG2937|consen 289 EEPGFPFG 296 (348)
T ss_pred CCcCCccc
Confidence 99999866
No 104
>PRK13910 DNA glycosylase MutY; Provisional
Probab=91.93 E-value=1.1 Score=39.43 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=18.6
Q ss_pred EEEEEeCCCCEEEEEEeeC---CCcEEeCee
Q 026059 33 GAIILDETYERCILVKGWK---GSSWSFPRG 60 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~---~~~w~~PgG 60 (244)
.+++.++ +++||.||.+ +|.|+||+.
T Consensus 190 ~~~~~~~--~~~ll~kr~~~l~~gl~~fP~~ 218 (289)
T PRK13910 190 LGVVIQN--NQIALEKIEQKLYLGMHHFPNL 218 (289)
T ss_pred EEEEEEC--CEEEEEECCCchhcccccCCCC
Confidence 3444443 3899998855 899999963
No 105
>PF14443 DBC1: DBC1
Probab=81.69 E-value=2.4 Score=32.57 Aligned_cols=46 Identities=30% Similarity=0.381 Sum_probs=32.8
Q ss_pred EEEEEEeeC-----CCcEEeC--eeecCCC-CCHHHHHHHHHHhhcCCCCCccc
Q 026059 43 RCILVKGWK-----GSSWSFP--RGKKNKD-EEDHACAIREVQEETGFDVSKLL 88 (244)
Q Consensus 43 kvLLvkr~~-----~~~w~~P--gG~ve~g-Es~~eaa~REl~EEtGl~v~~l~ 88 (244)
++|+.++-+ +|.|+-- ||.-+.| ..+..+|+|-++|-||++.+.-.
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct 62 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCT 62 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcC
Confidence 556665544 7888654 5555543 56899999999999999987533
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=80.38 E-value=3.3 Score=36.29 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.6
Q ss_pred EEEEEeCCCCEEEEEEeeC----CCcEEeCee
Q 026059 33 GAIILDETYERCILVKGWK----GSSWSFPRG 60 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~----~~~w~~PgG 60 (244)
.+++.+.+ +++||.||.. +|.|+||+.
T Consensus 231 ~~~~~~~~-~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 231 FLVLQNYD-GEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEeCC-CeEEEEeCCCCchhhccccCCCC
Confidence 34444444 4899999876 899999973
No 107
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=78.67 E-value=4.7 Score=36.35 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=25.7
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEeCeeecCC
Q 026059 29 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNK 64 (244)
Q Consensus 29 v~vv~~ii~~~~~~kvLLvkr~~----~~~w~~PgG~ve~ 64 (244)
....+.++.+.++ .++|.+|.. +|.|+||....+.
T Consensus 235 ~~~~~~~~~~~~~-~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDG-EVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred hheeeEEEEccCc-chhhhhCcccCceecccccccccccc
Confidence 3445666666664 899988877 7999999876654
No 108
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=77.46 E-value=7.4 Score=33.48 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=53.9
Q ss_pred EEEEEEeeC-C----CcEE-eCeeecCCCCCHHHHHHHHHHhhcCCCCC---cccccceeeee-e-----eCeEEEEEEE
Q 026059 43 RCILVKGWK-G----SSWS-FPRGKKNKDEEDHACAIREVQEETGFDVS---KLLNKDEFIEK-I-----FGQQRVRLYI 107 (244)
Q Consensus 43 kvLLvkr~~-~----~~w~-~PgG~ve~gEs~~eaa~REl~EEtGl~v~---~l~~~~~~~~~-~-----~~~~~~~~~~ 107 (244)
++.+.||++ + +.|+ ..||++.-|-.+.++|+.|..||..+... ++...+..... . .....-.+|-
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfD 228 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFD 228 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEe
Confidence 556666665 3 4443 45899999999999999999999999874 34433332221 1 1112222332
Q ss_pred EEeecCCCCcCCC-CCCceeeEEEEccccccC
Q 026059 108 IAGVRDDTAFAPQ-TKKEISEIAWQRLDELQP 138 (244)
Q Consensus 108 ~~~~~~~~~~~~~-~~~E~~~~~W~~~~el~~ 138 (244)
... +.+ ..|+ .+.|+..+.-+++.+..+
T Consensus 229 L~l-~~d--~iP~~nDGEV~~F~Lltl~~~v~ 257 (306)
T KOG4313|consen 229 LEL-PLD--FIPQNNDGEVQAFELLTLKDCVE 257 (306)
T ss_pred ccC-chh--hcCCCCCCceeeEeeecHHHHHH
Confidence 222 222 2232 356777777777666544
No 109
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.17 E-value=29 Score=22.94 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=20.7
Q ss_pred EEEEEeeCCCcEEeCeeecCCCCCHHHHHHHHHH
Q 026059 44 CILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQ 77 (244)
Q Consensus 44 vLLvkr~~~~~w~~PgG~ve~gEs~~eaa~REl~ 77 (244)
+-++.......|-+|||.+-.+-.-.+-+..|+.
T Consensus 13 itl~ys~~~~GWl~Pgg~vi~NPlkAqR~AE~~n 46 (60)
T PF07026_consen 13 ITLPYSHFKNGWLMPGGKVITNPLKAQRLAEELN 46 (60)
T ss_pred EEEEEEeccceeecCCCeeEcCHHHHHHHHHHHH
Confidence 3444333356799999999877554444444443
No 110
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=50.28 E-value=14 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=11.8
Q ss_pred eCeeecCCCCCHHHHHHHHHHhhc
Q 026059 57 FPRGKKNKDEEDHACAIREVQEET 80 (244)
Q Consensus 57 ~PgG~ve~gEs~~eaa~REl~EEt 80 (244)
+-||-..+|--+...+.||+-||.
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 347777888888889999999996
No 111
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=47.99 E-value=59 Score=28.26 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=39.3
Q ss_pred eCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHHH-HHhhcCCCCCcccccceeeeee
Q 026059 38 DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIRE-VQEETGFDVSKLLNKDEFIEKI 97 (244)
Q Consensus 38 ~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~RE-l~EEtGl~v~~l~~~~~~~~~~ 97 (244)
++++-+||-|.+.. .+|.|-.|+...-.++-.|+ +.+.|+..+..+.++++|....
T Consensus 33 ~~~~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~Dr~ 89 (322)
T COG4111 33 TDGGPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFADRD 89 (322)
T ss_pred cCCCceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhcccc
Confidence 34445888886532 28999999875555555554 5778999999888888776543
No 112
>PF14044 NETI: NETI protein
Probab=30.96 E-value=40 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.5
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCCC
Q 026059 61 KKNKDEEDHACAIREVQEETGFDVS 85 (244)
Q Consensus 61 ~ve~gEs~~eaa~REl~EEtGl~v~ 85 (244)
.|+.+||+.+|+.| ..+-|+.+.
T Consensus 3 eV~enETI~~CL~R--M~~eGY~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLAR--MKKEGYMPV 25 (57)
T ss_pred eccCCCcHHHHHHH--HHHcCCCce
Confidence 47899999999999 445576543
No 113
>PF12860 PAS_7: PAS fold
Probab=29.95 E-value=28 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=32.4
Q ss_pred EEEEEeCCCCEEEEEEeeCCCcEEeCeeecCCCCCHHHHHHH
Q 026059 33 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 74 (244)
Q Consensus 33 ~~ii~~~~~~kvLLvkr~~~~~w~~PgG~ve~gEs~~eaa~R 74 (244)
|++++|.++ ++++..+.-...|.+|...+..|-++.+.+.+
T Consensus 7 Gv~v~D~~~-rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 7 GVAVFDSDG-RLVFWNQRFRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred eEEEEcCCC-eEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH
Confidence 788888884 78777655588999999999999887775543
No 114
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=25.70 E-value=40 Score=30.33 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.5
Q ss_pred ecCCCCCHHHHHHHHHHhhcCCCC
Q 026059 61 KKNKDEEDHACAIREVQEETGFDV 84 (244)
Q Consensus 61 ~ve~gEs~~eaa~REl~EEtGl~v 84 (244)
.|+..+-..+.+.||++||+++-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 566777778899999999999754
Done!