Query 026060
Match_columns 244
No_of_seqs 160 out of 517
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 2.2E-52 4.8E-57 368.5 6.0 201 19-230 1-212 (252)
2 smart00770 Zn_dep_PLPC Zinc de 95.5 0.073 1.6E-06 47.3 8.2 113 22-151 38-154 (241)
3 KOG3189 Phosphomannomutase [Li 49.7 7.8 0.00017 33.9 0.9 40 126-175 190-236 (252)
4 PRK13859 type IV secretion sys 35.4 27 0.00059 23.7 1.6 14 1-14 1-14 (55)
5 COG4307 Uncharacterized protei 27.1 40 0.00088 30.7 1.8 34 173-206 181-219 (349)
6 PRK13883 conjugal transfer pro 24.6 51 0.0011 27.3 1.8 47 1-49 1-50 (151)
7 TIGR02052 MerP mercuric transp 22.4 63 0.0014 22.1 1.8 20 1-20 1-20 (92)
8 PF00882 Zn_dep_PLPC: Zinc dep 21.8 1.1E+02 0.0025 23.9 3.4 48 127-183 79-126 (163)
9 PRK11546 zraP zinc resistance 20.2 43 0.00092 27.5 0.6 20 29-48 38-57 (143)
10 KOG3688 Cyclic GMP phosphodies 20.1 2.1E+02 0.0045 28.1 5.2 53 106-185 337-389 (554)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=2.2e-52 Score=368.47 Aligned_cols=201 Identities=38% Similarity=0.741 Sum_probs=151.3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCCccccCcccccccc---cCCcccccccccCCC--CCCCccccCcc
Q 026060 19 WGKEGHFAICKIAEGYLTEDALAAVKELLPDSAEGDLANVCSWADEVRF---HMRWSSPLHYVDTPD--FMCNYKYCRDC 93 (244)
Q Consensus 19 Wg~~GH~~Va~IA~~~L~~~a~~~v~~lL~~~~~~~l~~~A~WaD~ir~---~~~~~~~wHyid~p~--~~c~~~~~~dc 93 (244)
||..|||+||+||+++|+|+++++|++||+.....+|+++|+|||+||. +++++++|||+|+|. ..|++...++|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~ 80 (252)
T PF02265_consen 1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC 80 (252)
T ss_dssp --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence 9999999999999999999999999999986556899999999999994 579999999999998 45566666788
Q ss_pred cccCCCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcc-cccCCCCCCceEEEeeCCcccch
Q 026060 94 HDSVGRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLH-VGFIGDKGGNTITVRWYRRKTNL 172 (244)
Q Consensus 94 ~~~~~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH-~~~~~D~GGN~i~V~~~g~~~nL 172 (244)
++++|++++|.+++++|++.+.+ ..++.++||||+||||||||||| +++++|+|||+++|.|+|+++||
T Consensus 81 -----~~~~~~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL 150 (252)
T PF02265_consen 81 -----PNGGCVVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL 150 (252)
T ss_dssp ------TT--HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred -----CCCCcHHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence 78999999999999999999876 46899999999999999999999 67889999999999999999999
Q ss_pred hHhhhhhhHhHHhhhcCcchHHHHHHHHHHhhccC----CC-CCccccccccCCCccccccCc
Q 026060 173 HHVWDTMIIDSALKTYYDSDIAVMIQSIQRNITDG----WS-NDVSSWENCANNQTVCPNGGH 230 (244)
Q Consensus 173 H~vWDs~ii~~~~~~~~~~~~~~~~~~l~~~i~~~----~~-~~~~~W~~c~~~~~~c~~~~a 230 (244)
|++||+.|+++.....+..+..++++.|..+++.. |. ..+..|+.. +..++|...|.
T Consensus 151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~Wa~E-S~~la~~~~y~ 212 (252)
T PF02265_consen 151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITKESFKSWQPGDPEDWANE-SHELACNIVYP 212 (252)
T ss_dssp HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHTTST
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHhhccchhhhhhhhhhHHHHHHH-HHHHHHHHHhc
Confidence 99999999998877666677888899988877632 32 245677542 45677776664
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=95.50 E-value=0.073 Score=47.27 Aligned_cols=113 Identities=20% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHH----HHHHHHHhCCCCCCCCccccCcccccccccCCcccccccccCCCCCCCccccCcccccC
Q 026060 22 EGHFAICKIAEGYLTED----ALAAVKELLPDSAEGDLANVCSWADEVRFHMRWSSPLHYVDTPDFMCNYKYCRDCHDSV 97 (244)
Q Consensus 22 ~GH~~Va~IA~~~L~~~----a~~~v~~lL~~~~~~~l~~~A~WaD~ir~~~~~~~~wHyid~p~~~c~~~~~~dc~~~~ 97 (244)
.-|.-|..=|...|..+ ....| ++|... -..|..-..|||.-...+.- ...||.|...+ -+|-+.
T Consensus 38 ~tH~~I~~qAi~iL~nd~~~~~~~~~-~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~------- 106 (241)
T smart00770 38 NTHLFIVNQALEILKNDNNKNEYKLV-EILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG------- 106 (241)
T ss_pred cHHHHHHHHHHHHHHhcCchhHHHHH-HHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC-------
Confidence 56999999999888654 22211 233211 23567778999986643332 26799886443 232111
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccc
Q 026060 98 GRKNRCVTGAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVG 151 (244)
Q Consensus 98 ~~~~~cv~~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~ 151 (244)
..........+...-.+.-.... ...--+.|-.-.|+++|+-||+|++
T Consensus 107 ---~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 107 ---FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred ---CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence 11233333444433322211110 1112244566789999999999996
No 3
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=49.66 E-value=7.8 Score=33.89 Aligned_cols=40 Identities=35% Similarity=0.497 Sum_probs=27.9
Q ss_pred hhhcHHHHHHHH-------HHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHh
Q 026060 126 EKYNLTEALMFL-------SHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHV 175 (244)
Q Consensus 126 ~~~~~~~aL~fL-------vH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~v 175 (244)
.-|++.++|+.| +||+||--.| |||++.+. ....|-=|+|
T Consensus 190 ~GWDKtyCLqhle~dgf~~IhFFGDkT~~---------GGNDyEIf-~dprtiGhsV 236 (252)
T KOG3189|consen 190 KGWDKTYCLQHLEKDGFDTIHFFGDKTMP---------GGNDYEIF-ADPRTIGHSV 236 (252)
T ss_pred CCcchhHHHHHhhhcCCceEEEeccccCC---------CCCcceee-eCCccccccc
Confidence 478999999976 5788876554 99999884 3333333443
No 4
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.44 E-value=27 Score=23.66 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=10.7
Q ss_pred ChHHHHHHHHHhhh
Q 026060 1 MWIWRALILLQLVN 14 (244)
Q Consensus 1 m~~~~~l~~~~~~~ 14 (244)
||++|+++++++++
T Consensus 1 MKY~lL~l~l~La~ 14 (55)
T PRK13859 1 MKYCLLCLALALAG 14 (55)
T ss_pred CchhHHHHHHHHHh
Confidence 88888888877654
No 5
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=40 Score=30.69 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=19.3
Q ss_pred hHhhhhhhHhHH-----hhhcCcchHHHHHHHHHHhhcc
Q 026060 173 HHVWDTMIIDSA-----LKTYYDSDIAVMIQSIQRNITD 206 (244)
Q Consensus 173 H~vWDs~ii~~~-----~~~~~~~~~~~~~~~l~~~i~~ 206 (244)
|.+||..|-... .+..++.+-+.+++.|.+....
T Consensus 181 Hy~~drLI~d~a~~L~afralFGDeraDYaqAL~~~Y~~ 219 (349)
T COG4307 181 HYYFDRLIADSADRLSAFRALFGDERADYAQALDRYYRG 219 (349)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhCCchhHHHHHHHHHhcC
Confidence 889998775522 1222344445667777665443
No 6
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=24.57 E-value=51 Score=27.30 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHhh-h-ccCCCChHHHH-HHHHHHHhcCCHHHHHHHHHhCCC
Q 026060 1 MWIWRALILLQLV-N-GVLGWGKEGHF-AICKIAEGYLTEDALAAVKELLPD 49 (244)
Q Consensus 1 m~~~~~l~~~~~~-~-~a~AWg~~GH~-~Va~IA~~~L~~~a~~~v~~lL~~ 49 (244)
||+++++++++++ + .+. +..|-. .+...+.+.+..++.++|.+++++
T Consensus 1 Mrk~l~~~~l~l~LaGCAt--~~~gnf~~~s~~~a~~iA~D~v~qL~~~ypP 50 (151)
T PRK13883 1 MRKIVLLALLALALGGCAT--SQYGNFVQASAADQQKLATDAVQQLATLYPP 50 (151)
T ss_pred ChhHHHHHHHHHHHhcccC--CCCCcccccCHHHHHHHHHHHHHHHHHhCCC
Confidence 8888777776543 2 222 334433 266667777777777777777764
No 7
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=22.36 E-value=63 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=13.2
Q ss_pred ChHHHHHHHHHhhhccCCCC
Q 026060 1 MWIWRALILLQLVNGVLGWG 20 (244)
Q Consensus 1 m~~~~~l~~~~~~~~a~AWg 20 (244)
||+++-|++++++.+-.+|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPAWA 20 (92)
T ss_pred ChhHHHHHHHHHHhcchhhh
Confidence 88777777776655555554
No 8
>PF00882 Zn_dep_PLPC: Zinc dependent phospholipase C; InterPro: IPR001531 Bacillus cereus contains a monomeric phospholipase C 3.1.4.3 from EC (PLC) of 245 amino-acid residues that binds three zinc ions []. Although PLC prefers to act on phosphatidylcholine, it also shows weak catalytic activity with sphingomyelin and phosphatidylinositol []. Sequence studies have shown the PLC protein to be similar to the following: Alpha toxin from Clostridium perfringens and Clostridium bifermentans, which are zinc-dependent phospholipases C involved in haemolysis and cell rupture []. Lecithinase C from Listeria monocytogenes, which aids cell-to-cell spread by breaking down the 2-membrane vacuoles that surround the bacterium during transfer []. Each of these proteins is a zinc-dependent enzyme, binding 3 zinc ions per molecule []. The enzymes catalyse the conversion of phosphatidylcholine and water to 1,2-diacylglycerol and choline phosphate [, , ]. In B. cereus, there are nine residues known to be involved in binding the zinc ions: 5 His, 2 Asp, 1 Glu and 1 Trp. These residues are all conserved in the Clostridium alpha-toxin [].; GO: 0004629 phospholipase C activity, 0008270 zinc ion binding; PDB: 2WXU_A 1QMD_A 2WY6_C 1QM6_B 2WXT_A 1KHO_B 1P6E_A 2HUC_A 1P5X_A 2FFZ_A ....
Probab=21.80 E-value=1.1e+02 Score=23.93 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=31.1
Q ss_pred hhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHhhhhhhHhH
Q 026060 127 KYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDS 183 (244)
Q Consensus 127 ~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~vWDs~ii~~ 183 (244)
....++.|-++.|++.|.-. |..+. +.+ ...+....-|...++.+...
T Consensus 79 ~~~~a~~lG~~~H~~~D~~~--H~~~~---~~~----~~~~~~~~~H~~~E~~ld~~ 126 (163)
T PF00882_consen 79 SKEAAFLLGYLCHYIADSFC--HPVPA---NHN----KIFSGNLLQHRYYETYLDSY 126 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--H---H---TTT----TTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccc---ccc----cccccchHHHHHHHHHHHHH
Confidence 35678999999999999999 81000 000 02233557788888887643
No 9
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.24 E-value=43 Score=27.50 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 026060 29 KIAEGYLTEDALAAVKELLP 48 (244)
Q Consensus 29 ~IA~~~L~~~a~~~v~~lL~ 48 (244)
.=.+..|||+.++.+++|..
T Consensus 38 ~~~~~~LT~EQQa~~q~I~~ 57 (143)
T PRK11546 38 QQNAAPLTTEQQAAWQKIHN 57 (143)
T ss_pred ccccccCCHHHHHHHHHHHH
Confidence 44566799999999999986
No 10
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=20.09 E-value=2.1e+02 Score=28.06 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=38.7
Q ss_pred HHHHHHHHHHccCCCCchhhhhhcHHHHHHHHHHHHhhcCCCcccccCCCCCCceEEEeeCCcccchhHhhhhhhHhHHh
Q 026060 106 GAIYNYTMQLKSGYQDSISVEKYNLTEALMFLSHFIGDVHQPLHVGFIGDKGGNTITVRWYRRKTNLHHVWDTMIIDSAL 185 (244)
Q Consensus 106 ~aI~~~~~~L~~~~~~~~~~~~~~~~~aL~fLvH~vGDiHQPLH~~~~~D~GGN~i~V~~~g~~~nLH~vWDs~ii~~~~ 185 (244)
..|+.+++.|..... -++..+|+.|+| ..||-.|- +.=+||.-|--.+++...
T Consensus 337 qqiktmk~~L~~~e~-------iDk~k~lsLllh-~aDIshPa-------------------K~w~lH~rWT~~llEEFf 389 (554)
T KOG3688|consen 337 QQIKTMKERLQQPEG-------IDKLKALSLLLH-AADISHPA-------------------KPWGLHHRWTMALLEEFF 389 (554)
T ss_pred HHHHHHHHHhhChhh-------hhhHHHHHHHHH-HhccCCCc-------------------ccccHHHHHHHHHHHHHH
Confidence 356666666665432 378899999999 57887774 344799999999998653
Done!