Query 026062
Match_columns 244
No_of_seqs 111 out of 337
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_D 40S ribosomal protein S 100.0 5E-111 2E-115 757.1 19.7 244 1-244 19-262 (265)
2 3u5c_E RP5, S7, YS6, 40S ribos 100.0 1E-110 4E-115 753.8 17.0 242 1-242 19-260 (261)
3 2xzm_W 40S ribosomal protein S 100.0 3E-108 1E-112 737.4 24.9 239 1-239 19-259 (260)
4 3j20_E 30S ribosomal protein S 100.0 1E-98 3E-103 671.3 21.5 220 1-221 20-243 (243)
5 3kbg_A 30S ribosomal protein S 100.0 7.8E-86 2.7E-90 578.5 20.0 203 17-226 1-204 (213)
6 1p9k_A ORF, hypothetical prote 97.4 8.7E-05 3E-09 54.4 3.4 73 1-83 3-77 (79)
7 2cqj_A BRMS2, U3 small nucleol 96.9 0.00047 1.6E-08 50.2 2.7 44 33-76 16-61 (71)
8 3j20_D 30S ribosomal protein S 96.3 0.0018 6.2E-08 55.3 2.6 44 34-77 112-157 (180)
9 1c05_A Ribosomal protein S4 de 96.1 0.0079 2.7E-07 49.8 5.8 50 26-76 53-102 (159)
10 3bbn_D Ribosomal protein S4; s 96.1 0.0062 2.1E-07 52.7 5.1 43 34-76 98-140 (201)
11 2vqe_D 30S ribosomal protein S 95.5 0.013 4.5E-07 50.6 4.9 43 34-76 108-150 (209)
12 3u5c_J 40S ribosomal protein S 95.4 0.0042 1.4E-07 53.8 1.2 44 34-77 116-161 (197)
13 1dm9_A Hypothetical 15.5 KD pr 95.4 0.042 1.4E-06 44.2 7.0 61 21-83 6-66 (133)
14 2xzm_D Ribosomal protein S4 co 95.3 0.0074 2.5E-07 51.4 2.5 43 33-75 115-159 (181)
15 1ksk_A Ribosomal small subunit 95.2 0.03 1E-06 48.0 6.0 52 22-75 2-53 (234)
16 2do3_A Transcription elongatio 95.1 0.028 9.6E-07 41.2 4.7 46 157-206 18-63 (69)
17 3r8n_D 30S ribosomal protein S 94.9 0.0081 2.8E-07 52.2 1.5 43 34-76 104-146 (205)
18 1vio_A Ribosomal small subunit 94.5 0.04 1.4E-06 47.7 5.0 64 24-89 3-72 (243)
19 2ckk_A KIN17; beta barrel, rib 94.3 0.11 3.7E-06 41.8 6.7 41 139-182 56-96 (127)
20 3dh3_A Ribosomal large subunit 93.9 0.086 2.9E-06 47.5 6.0 66 22-90 5-78 (290)
21 2k6p_A Uncharacterized protein 93.8 0.016 5.5E-07 43.0 0.9 54 26-81 3-56 (92)
22 1v9f_A Ribosomal large subunit 92.2 0.054 1.8E-06 48.9 2.1 53 22-75 15-67 (325)
23 3iz6_C 40S ribosomal protein S 92.1 0.0039 1.3E-07 54.0 -5.3 42 34-75 118-159 (195)
24 2ktl_A Tyrosyl-tRNA synthetase 91.9 0.13 4.4E-06 43.3 3.9 75 25-100 51-139 (164)
25 1h3f_A Tyrosyl-tRNA synthetase 91.7 0.29 9.8E-06 46.5 6.5 44 23-67 368-411 (432)
26 2jan_A Tyrosyl-tRNA synthetase 91.5 0.38 1.3E-05 45.8 7.1 66 25-96 357-422 (432)
27 3hp7_A Hemolysin, putative; st 90.4 0.15 5.1E-06 45.9 3.0 52 24-76 7-60 (291)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 86.8 0.12 4.3E-06 48.7 0.0 49 23-72 352-400 (420)
29 1vq8_T 50S ribosomal protein L 84.4 1.2 4.2E-05 35.6 4.7 56 153-211 39-101 (120)
30 3u5e_Y L33, YL33, 60S ribosoma 82.2 1.9 6.4E-05 34.9 5.0 56 153-211 46-108 (127)
31 2ts1_A Tyrosyl-tRNA synthetase 81.1 0.31 1.1E-05 46.2 0.0 45 24-69 352-396 (419)
32 1nz9_A Transcription antitermi 80.8 3.9 0.00013 27.7 5.6 43 155-199 3-45 (58)
33 3j21_U 50S ribosomal protein L 79.8 2.1 7.1E-05 34.3 4.5 56 153-211 42-104 (121)
34 3iz5_Y 60S ribosomal protein L 73.5 3.5 0.00012 34.2 4.3 72 153-236 45-123 (150)
35 3v2d_Y 50S ribosomal protein L 71.1 2.5 8.5E-05 33.2 2.7 29 155-183 5-33 (110)
36 3r8s_U 50S ribosomal protein L 71.1 3.6 0.00012 31.9 3.6 27 156-182 3-29 (102)
37 4a17_S RPL26, 60S ribosomal pr 69.3 5.9 0.0002 32.3 4.7 71 153-235 45-122 (135)
38 2ftc_N Mitochondrial ribosomal 68.6 5.3 0.00018 30.5 4.0 23 160-182 1-23 (96)
39 4a18_F RPL14; ribosome, eukary 67.9 4.1 0.00014 32.8 3.4 32 157-192 7-38 (126)
40 2zjr_R 50S ribosomal protein L 67.6 3.9 0.00014 32.2 3.2 36 156-194 15-50 (115)
41 2zkr_t 60S ribosomal protein L 63.6 3.9 0.00013 33.7 2.5 55 154-211 46-108 (145)
42 3iz5_N 60S ribosomal protein L 59.4 5 0.00017 32.6 2.4 26 157-182 7-32 (134)
43 2e6z_A Transcription elongatio 57.8 4.8 0.00016 27.8 1.8 27 155-181 6-32 (59)
44 2wg5_A General control protein 56.3 25 0.00086 26.9 5.9 47 119-165 52-104 (109)
45 4a18_N RPL27, ribosomal protei 51.8 9.4 0.00032 31.4 2.9 27 157-183 5-31 (144)
46 3izc_N 60S ribosomal protein R 51.2 8.1 0.00028 31.5 2.4 32 157-192 15-46 (138)
47 3j21_5 50S ribosomal protein L 49.7 7.5 0.00026 28.9 1.9 26 157-182 4-29 (83)
48 2joy_A 50S ribosomal protein L 49.5 8.9 0.00031 29.0 2.3 51 157-211 4-58 (96)
49 3p8b_B Transcription antitermi 41.4 14 0.00048 29.4 2.4 29 155-183 90-118 (152)
50 3m9b_A Proteasome-associated A 38.4 49 0.0017 29.4 5.6 51 134-199 133-183 (251)
51 2x1d_A Acyl-coenzyme A\:6-amin 36.5 66 0.0023 28.2 6.3 28 22-50 177-204 (357)
52 1i3z_A EWS/FLI1 activated tran 34.8 1.1E+02 0.0039 21.9 6.4 54 37-94 9-66 (103)
53 2jvv_A Transcription antitermi 34.4 67 0.0023 25.9 5.6 29 154-182 125-153 (181)
54 2in0_A Endonuclease PI-MTUI; h 30.6 66 0.0023 24.6 4.7 25 187-211 54-78 (139)
55 3kdf_D Replication protein A 3 29.8 1.9E+02 0.0063 22.1 9.0 78 49-129 21-109 (132)
56 1d4t_A T cell signal transduct 29.8 1E+02 0.0035 22.3 5.4 54 37-94 10-67 (104)
57 1zv1_A Doublesex protein; UBA 29.0 22 0.00077 25.5 1.5 28 21-51 24-52 (65)
58 3gvz_A Uncharacterized protein 27.5 44 0.0015 29.7 3.5 30 20-49 103-132 (299)
59 2iwa_A Glutamine cyclotransfer 27.3 1E+02 0.0035 26.7 5.8 59 93-158 128-191 (266)
60 1ka6_A SH2 domain protein 1A; 26.8 1E+02 0.0036 23.4 5.2 53 38-94 11-67 (128)
61 3iuw_A Activating signal coint 26.8 39 0.0013 25.1 2.6 17 129-145 31-47 (83)
62 3hrd_D Nicotinate dehydrogenas 26.6 32 0.0011 28.3 2.3 53 22-78 21-81 (160)
63 1q7h_A Conserved hypothetical 25.6 51 0.0017 26.0 3.3 38 112-150 73-115 (153)
64 2lcj_A PAB POLC intein; hydrol 23.7 1.6E+02 0.0056 23.7 6.1 42 104-145 75-120 (185)
65 4gop_B Putative uncharacterize 23.5 2.3E+02 0.0079 21.7 6.7 77 50-129 27-114 (136)
66 2qf4_A Cell shape determining 22.9 2.7E+02 0.0094 22.4 7.3 60 133-212 106-166 (172)
67 3lag_A Uncharacterized protein 22.8 1.4E+02 0.0048 21.5 5.0 59 106-169 17-75 (98)
68 2oqc_A Penicillin V acylase; N 22.8 2.6E+02 0.0089 24.6 7.7 65 21-99 95-159 (327)
69 2bjf_A Choloylglycine hydrolas 21.9 2.8E+02 0.0096 24.4 7.8 65 21-99 97-161 (329)
70 3bbo_W Ribosomal protein L24; 21.8 12 0.00043 32.0 -1.2 27 156-182 68-94 (191)
71 4eql_A 4-substituted benzoates 21.8 31 0.0011 33.8 1.5 59 79-145 351-409 (581)
72 1mkh_A Metrs;, C-terminal doma 21.8 1.1E+02 0.0036 23.3 4.3 16 173-188 14-29 (107)
73 2quy_A Penicillin acylase; aut 21.3 53 0.0018 29.2 2.8 65 21-99 97-161 (335)
74 3r4d_A CEA-related cell adhesi 20.9 2E+02 0.0069 21.5 5.8 66 82-147 64-133 (208)
75 3e0e_A Replication protein A; 20.8 2.4E+02 0.0084 20.4 6.1 10 156-165 63-72 (97)
76 3dcl_A TM1086; SAD, structural 20.4 47 0.0016 30.0 2.2 75 116-192 24-118 (284)
77 2hbp_A Cytoskeleton assembly c 20.0 93 0.0032 22.4 3.3 42 81-136 5-46 (68)
No 1
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-111 Score=757.15 Aligned_cols=244 Identities=89% Similarity=1.414 Sum_probs=199.3
Q ss_pred CCcccCceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCce
Q 026062 1 MLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNEN 80 (244)
Q Consensus 1 ml~K~~~~~a~rpspGPH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~ 80 (244)
||+|++++|||+||||||+++|||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+|||+
T Consensus 19 ~l~kk~~~fa~rpspGPHkl~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~ 98 (265)
T 3iz6_D 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGEN 98 (265)
T ss_dssp ------------------------CHHHHHHHHHTTSSCSSSTHHHHHTTCCEETTEECCCTTCCCCTTCEEECCSSCCE
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCcEEEEEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCC
Q 026062 81 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVG 160 (244)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~~G 160 (244)
|||+||++|||.+|+|++|||+||||||++|+++++|+|||+|||||||+||||.||+||||+||||++||+|||||++|
T Consensus 99 fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~DTv~idl~~~kI~d~ikfe~G 178 (265)
T 3iz6_D 99 YRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVG 178 (265)
T ss_dssp EEEEECTTSCEEEEEECHHHHTCEEEEEEEEECCSSSCCEEEETTSCCCBSCSSCCCTTCEEEECSSSCCEEEEECCSTT
T ss_pred EEEEECCCCcEEEEECChHHcceEEEEEEEEEEccCCceEEEeecceEEecCCCCcccCCEEEEECCCCceeeEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHHHHH
Q 026062 161 NIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQAA 240 (244)
Q Consensus 161 ~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~~~ 240 (244)
|+||||||+|+|++|+|.+|++|+|||++|||+|++|++|+|+++||||||++++||||||++||||||++|||++++++
T Consensus 179 nl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~ 258 (265)
T 3iz6_D 179 NVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258 (265)
T ss_dssp CEEEECSSSSCSCEEEEEEEECCSSSCCEEEECCCSSCCEEEEGGGEEEEECSSCCCCCCCCCC----------------
T ss_pred CEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHhC
Q 026062 241 QAAA 244 (244)
Q Consensus 241 ~~~~ 244 (244)
++++
T Consensus 259 ~~~~ 262 (265)
T 3iz6_D 259 AQAA 262 (265)
T ss_dssp ----
T ss_pred hhhh
Confidence 8763
No 2
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=100.00 E-value=1e-110 Score=753.78 Aligned_cols=242 Identities=67% Similarity=1.103 Sum_probs=239.4
Q ss_pred CCcccCceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCce
Q 026062 1 MLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNEN 80 (244)
Q Consensus 1 ml~K~~~~~a~rpspGPH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~ 80 (244)
||+|++++|||+||||||+++|||||++||||+|+||+|++||++||+||+|+||||||||++||||||||||||+|||+
T Consensus 19 ~l~kk~~~fa~rps~GPH~l~eslPL~i~LRd~LkyA~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI~kt~e~ 98 (261)
T 3u5c_E 19 LLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNEN 98 (261)
T ss_dssp CCCSSSSSBCCCCCSSSSCGGGEEEHHHHHHHTTCCCSSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEETTTTEE
T ss_pred ccccccceeccCCCCCCCcchhheeeHHHhhhhhcccccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEEcCCCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCC
Q 026062 81 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVG 160 (244)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~~G 160 (244)
|||+||++|||.+|+|++|||+||||||++|+++++|+|||+|||||||+||||.||+||||++|||++||+|||||++|
T Consensus 99 fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~~~G~pql~tHDGrti~~~dp~ik~~Dtv~idl~~~kI~d~ikfe~G 178 (261)
T 3u5c_E 99 FRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAG 178 (261)
T ss_dssp EECCBCSSSCBCCEECCTTGGGCEECCEEEEEECGGGCEEEEETTTEEEESCCSSCCTTCEEEECSSSSCEEEEECCCSS
T ss_pred EEEEECCCCcEEEEECChHHcceEEEEEEEEEEecCCceEEEEecceEEecCCCCcccCCEEEEECCCCceeeEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHHHHH
Q 026062 161 NIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQAA 240 (244)
Q Consensus 161 ~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~~~ 240 (244)
|+||||||+|+|++|+|.+|++|+|||++|||+|++|++|+|+++||||||++++||||||++||||||++|||++++++
T Consensus 179 nl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd~~g~~F~T~~~nvfvIGk~~kp~IsLp~~kg~~~~~~eer~~~~~~ 258 (261)
T 3u5c_E 179 KLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRRAQ 258 (261)
T ss_dssp CCEEECSSTTTTCBCCCCEEECCTTSCCEEEEECTTSCEEEEEGGGEEECCSSSCCSSCCCTTTTCCCCHHHHHHHHTTT
T ss_pred CEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEECCCCeEEEEeCeEEEEccCCCeeEeCCCCCceeeehHHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999987
Q ss_pred HH
Q 026062 241 QA 242 (244)
Q Consensus 241 ~~ 242 (244)
+.
T Consensus 259 ~~ 260 (261)
T 3u5c_E 259 QG 260 (261)
T ss_dssp TC
T ss_pred cc
Confidence 63
No 3
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=100.00 E-value=3.2e-108 Score=737.36 Aligned_cols=239 Identities=55% Similarity=0.956 Sum_probs=236.4
Q ss_pred CCcccCceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhC--ceEEECCEEeccccCCCcceeEEEeccCC
Q 026062 1 MLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQ--RHVLVDGKVRTDKTYPAGFMDVVSIPKTN 78 (244)
Q Consensus 1 ml~K~~~~~a~rpspGPH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~--~~V~VDGkvr~D~k~PvG~mDVIsI~kt~ 78 (244)
||+|++++||||||||||+++|||||++||||+|+||+|++||++||+| |+|+||||||+|++||||||||||||+||
T Consensus 19 ~l~kk~~~~a~rpspGPH~~~eslPL~i~LRd~LkyA~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI~kt~ 98 (260)
T 2xzm_W 19 MLNKLGGIWATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRIEKTD 98 (260)
T ss_dssp TCCSSSCSBCCCCCSSSSCSSSCEEHHHHHTTTTCSCCSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEEGGGT
T ss_pred eeccccceEccCCCCCCCccceeehhHhhhhhhhccccchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeEcCCC
Confidence 7999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEee
Q 026062 79 ENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 158 (244)
Q Consensus 79 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~ 158 (244)
|+|||+||++|+|.+|+|++|||+||||||++|++++||+|||+|||||||+|+||.||+||||+||||++||+|||||+
T Consensus 99 e~fRll~D~kGrf~l~~I~~eEA~~KLcKV~~k~~~k~G~~ql~~HDGrti~~~d~~ik~~Dtv~idl~~~kI~d~ikfe 178 (260)
T 2xzm_W 99 QSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLE 178 (260)
T ss_dssp EEEEEEECSSSCEEEEECCTTGGGEEEEEEEEEEEETTTEEEEEETTTEEEESCCSSCCTTBEEEEETTTTEEECCCBCC
T ss_pred CEEEEEEcCCccEEEEEcChHHcccEEEEEEEEEEccCCceEEEecCCceEeccCCcCccCCeEEEeCCCCceeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcceeeehHHHHHHHH
Q 026062 159 VGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 238 (244)
Q Consensus 159 ~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi~~~~~~~~~~~~ 238 (244)
+||+||||||+|+|++|+|.++++|+||+|+|||+|++|++|+|+++||||||++++||||||+++|||||++|||++++
T Consensus 179 ~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd~~g~~F~T~~~~vfvIG~~~kp~Islp~~kgi~l~i~eer~~~~ 258 (260)
T 2xzm_W 179 SGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRETILEERKRKF 258 (260)
T ss_dssp SSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEECTTCCCEEEEGGGEEEEESTTCCSSCCSSSSSCCCCHHHHHHHHT
T ss_pred CCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEeCCCCeEEEEEeeEEEECCCCceeEecCCCCCeecchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999877999999999999999999999987
Q ss_pred H
Q 026062 239 A 239 (244)
Q Consensus 239 ~ 239 (244)
+
T Consensus 259 ~ 259 (260)
T 2xzm_W 259 S 259 (260)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-98 Score=671.25 Aligned_cols=220 Identities=33% Similarity=0.533 Sum_probs=218.3
Q ss_pred CCcccCceeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCce
Q 026062 1 MLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNEN 80 (244)
Q Consensus 1 ml~K~~~~~a~rpspGPH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~ 80 (244)
||+|++++||||||||||+++|||||++||||+|+||+|.+||++||+||+|+||||+|+|++|||||||||||++++|+
T Consensus 20 ~l~kk~~~~a~rps~GPH~~~~~lPL~i~LRdrLgyA~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~kt~e~ 99 (243)
T 3j20_E 20 YIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEH 99 (243)
T ss_dssp CCCTTSSSCBCCCCSCSSCSTTCEEHHHHHHTTSCCCSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEETTTTEE
T ss_pred ccccccceeccCCCCCCCccccceeehhhhhhhhccccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEecccCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecC---CCCccCCCeEEEecCCCeeeeEEEe
Q 026062 81 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYP---DPLIKANDTIKLDLEENKITDFIKF 157 (244)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~---d~~ik~~Dtv~i~l~~~kI~d~i~f 157 (244)
||++||++|||.+|+|++|||+||||||++|+++++|+|||+|||||||+|| ||.||+||||++|||++||+|||||
T Consensus 100 fr~i~d~kGr~~~~~I~~eea~~KLcKV~~k~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf 179 (243)
T 3j20_E 100 YRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPF 179 (243)
T ss_dssp EEEEECSSSCEEEEEECTTTTTEEEECCSCEEEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEEC
T ss_pred eEEEecCCCceEEEEeChhhccceEEEEeeeEEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEec
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eCCcEEEEECCCcceeEEEEEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecC
Q 026062 158 DVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 221 (244)
Q Consensus 158 ~~G~~~~v~gG~n~G~vG~I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~kp~islp 221 (244)
++||+||||||+|+|++|+|.+|++|+|| ||+|||+|++|++|+|+++||||||+ ++||||||
T Consensus 180 ~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~~V~v~d~~g~~F~T~~~~vfvIGk-~kp~islp 243 (243)
T 3j20_E 180 EKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243 (243)
T ss_dssp CTTCEEEECSSSSTTCEEEEEECCCCCSSSCCEEEEEESSCCCEEEETTTEEEEES-SCSCCSCC
T ss_pred cCCCEEEEECCccceEEEEEEEEEEecCCCceEEEEEcCCCCEEEEEeceEEEECC-CCccccCC
Confidence 99999999999999999999999999988 99999999999999999999999998 99999998
No 5
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=100.00 E-value=7.8e-86 Score=578.49 Aligned_cols=203 Identities=33% Similarity=0.486 Sum_probs=189.9
Q ss_pred CCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 026062 17 PHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 96 (244)
Q Consensus 17 PH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I 96 (244)
.|+++|||||++||||+||||+|.||||+||+||+|+||||+|+|++||||||||||| ++|+||++||++|||.+|+|
T Consensus 1 ~Hkl~eslPL~i~LRdrLgyA~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI--t~e~fRli~d~kGrf~~~~I 78 (213)
T 3kbg_A 1 MHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKE 78 (213)
T ss_dssp ---CCSCEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE--TTEEEEEEECTTSCEEEEEC
T ss_pred CCcchhceeeHHHHhhhhcccccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe--cCceeEEEecCCCcEEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEE
Q 026062 97 RDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGI 176 (244)
Q Consensus 97 ~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~~G~~~~v~gG~n~G~vG~ 176 (244)
++|||+||||||++|++++||+|||+|||||||+||||.||+||||++|||++||+|||||++||+||||||+|+||+|+
T Consensus 79 ~~eea~~KLcKV~~k~~~~~G~~~l~~HDGrti~~pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~ 158 (213)
T 3kbg_A 79 TKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGT 158 (213)
T ss_dssp CTTGGGEEEEEEEEEEEEGGGEEEEEETTSCEEEECCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEE
T ss_pred ChhHccceEEEEEEEEEecCCeeEEEecCccEEEcCCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCC-ccEEEEEcCCCCeEeEeeceEEEEccCCCceEecCCCcce
Q 026062 177 IKNREKHKGS-FETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGI 226 (244)
Q Consensus 177 I~~i~~~~~s-~~~v~i~d~~g~~F~T~~~~vfvIG~~~kp~islp~~~gi 226 (244)
|.+|++++|| +|+||++ ++|+|+++||||||+ ++|||.+|.+.=+
T Consensus 159 I~~ie~~~gs~~~iV~v~----~~F~T~~~~vfvIGk-~~p~i~~~p~~~~ 204 (213)
T 3kbg_A 159 ISKIEAKEGSSANLVHFQ----EGFSTIKDHVFMIGS-SKFSFVLSPEEVI 204 (213)
T ss_dssp EEEECCCSCC--CEEEET----TTEEEEGGGEEEEEC-SSCBCC-------
T ss_pred EEEEEEccCCCCCEEEEE----EEEEeeeceEEEEcC-CCccEEeChHHcc
Confidence 9999999999 5999997 689999999999998 7999977665433
No 6
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.43 E-value=8.7e-05 Score=54.39 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCcccCc--eeccCCCCCCCCCcccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCC
Q 026062 1 MLDKLGG--AFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTN 78 (244)
Q Consensus 1 ml~K~~~--~~a~rpspGPH~~~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~ 78 (244)
||+++.- .|.... .+.+.|--+|.+. +++.+.+||++.+.+|.|+|||+++++..+.+---|+|++. +
T Consensus 3 ~~~~~~~~~~~~v~~-------~~~~RLdk~L~~~-g~~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~--~ 72 (79)
T 1p9k_A 3 MIHRMSNMATFSLGK-------HPHVELCDLLKLE-GWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA--G 72 (79)
T ss_dssp CCCSSCCCCEEECCS-------CSCCCHHHHHHHH-TSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET--T
T ss_pred hhhccccCcEEEECC-------CCCchHHHHHHHC-CCCCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCCEEEEC--C
Confidence 6777663 355432 1236788888885 89989999999999999999999999998888777999994 4
Q ss_pred ceEEE
Q 026062 79 ENFRL 83 (244)
Q Consensus 79 e~yRv 83 (244)
+.+.+
T Consensus 73 ~~~~~ 77 (79)
T 1p9k_A 73 HSVQV 77 (79)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
No 7
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.00047 Score=50.23 Aligned_cols=44 Identities=27% Similarity=0.310 Sum_probs=39.0
Q ss_pred hhcccccHHHHHHHHhCceEEECCEEeccccCCCcc--eeEEEecc
Q 026062 33 RLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGF--MDVVSIPK 76 (244)
Q Consensus 33 ~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~--mDVIsI~k 76 (244)
++++|.|.++|++.+++|.|.|||++++.+-|.|-. -|.|++..
T Consensus 16 ~~gla~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~ 61 (71)
T 2cqj_A 16 KLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVD 61 (71)
T ss_dssp HTTCSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESC
T ss_pred HhCCcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEEC
Confidence 369999999999999999999999999999999876 67887543
No 8
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.26 E-value=0.0018 Score=55.29 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=40.5
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 77 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~m--DVIsI~kt 77 (244)
+++|.|.++|++.+.+|.|.|||.+++++.|.|-.- |+|++...
T Consensus 112 ~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~ 157 (180)
T 3j20_D 112 KGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYART 157 (180)
T ss_dssp HTSSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSC
T ss_pred CcccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCC
Confidence 589999999999999999999999999999999886 99999653
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=96.13 E-value=0.0079 Score=49.82 Aligned_cols=50 Identities=22% Similarity=0.267 Sum_probs=42.1
Q ss_pred hHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 026062 26 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 76 (244)
Q Consensus 26 L~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k 76 (244)
|--+|.. +++|.+.++|++.+.+|.|.|||++++++.|.+---|+|++..
T Consensus 53 LD~~L~~-~g~~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 53 LDNLVYR-LGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHH-TTSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHH-cCCcCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 3444543 4688999999999999999999999999999887779999954
No 10
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=96.08 E-value=0.0062 Score=52.70 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=39.6
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 76 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k 76 (244)
+++|.|..+|++.+.+|.|.|||++++++.|.|---|+|++..
T Consensus 98 ~g~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 98 LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECS
T ss_pred cCCcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCCEEEEcc
Confidence 4688899999999999999999999999999998889999964
No 11
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=95.53 E-value=0.013 Score=50.64 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=39.2
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 76 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k 76 (244)
+++|.+.++|++++.+|.|.|||++++++.|.+---|+|++..
T Consensus 108 ~g~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 108 LGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp TTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred hcCcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCCEEEEcC
Confidence 4678899999999999999999999999999988789999964
No 12
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=95.38 E-value=0.0042 Score=53.83 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=39.3
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcce--eEEEeccC
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM--DVVSIPKT 77 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~m--DVIsI~kt 77 (244)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.= |.|++...
T Consensus 116 ~G~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~ 161 (197)
T 3u5c_J 116 LGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPT 161 (197)
T ss_dssp SSTTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSS
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCC
Confidence 689999999999999999999999999999988775 67887653
No 13
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=95.36 E-value=0.042 Score=44.16 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=48.3
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEE
Q 026062 21 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRL 83 (244)
Q Consensus 21 ~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRv 83 (244)
.+++-|--||... .+..+...|++++.+|.|.|||+++ ...+.|-.-|+|+|...++.|.+
T Consensus 6 ~~~~RLDk~L~~~-~~~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~ 66 (133)
T 1dm9_A 6 AVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 (133)
T ss_dssp TTCCBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEE
T ss_pred ccchhHHHHHHHC-CCCCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeE
Confidence 3457788888874 3346899999999999999999997 78888877899999765555443
No 14
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=95.33 E-value=0.0074 Score=51.43 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=37.7
Q ss_pred hhcccccHHHHHHHHhCceEEECCEEeccccCCCccee--EEEec
Q 026062 33 RLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMD--VVSIP 75 (244)
Q Consensus 33 ~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mD--VIsI~ 75 (244)
.+++|.|.++|++.+.+|.|.|||++++++.|.|-.-| .|++.
T Consensus 115 ~~G~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~ 159 (181)
T 2xzm_D 115 KLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFA 159 (181)
T ss_dssp HTTCSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECT
T ss_pred hccccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEe
Confidence 36899999999999999999999999999999986554 67763
No 15
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=95.17 E-value=0.03 Score=48.03 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=43.2
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 026062 22 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 75 (244)
Q Consensus 22 ~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~ 75 (244)
+++-|--+|.... ..+.++|++.+.+|.|+|||+++++..+++---|+|++.
T Consensus 2 ~~~RLd~~L~~~~--~~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 53 (234)
T 1ksk_A 2 SHMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD 53 (234)
T ss_dssp CCEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred CcccHHHHHHHcC--CCCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCCEEEEe
Confidence 3566777888763 678999999999999999999998777777666999985
No 16
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=95.11 E-value=0.028 Score=41.21 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=36.3
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCeEeEeece
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGN 206 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~F~T~~~~ 206 (244)
|++|+.+-|++|+|.|+.|.|..++.. -++.+-|...+++.-...+
T Consensus 18 F~~GDHVkVi~G~~~getGlVV~v~~d----~v~v~SD~t~~Ei~V~~~d 63 (69)
T 2do3_A 18 FKMGDHVKVIAGRFEGDTGLIVRVEEN----FVILFSDLTMHELKVLPRD 63 (69)
T ss_dssp CCTTCEEEESSSTTTTCEEEEEEECSS----CEEEEESSSCSEEEECTTS
T ss_pred ccCCCeEEEeccEEcCceEEEEEEeCC----EEEEEeCCCCCEEEEEhHH
Confidence 789999999999999999999999632 3555677777777655444
No 17
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=94.86 E-value=0.0081 Score=52.20 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=39.3
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK 76 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k 76 (244)
+++|.|.++|++.+.+|.|.|||++++++.|.+---|+|++..
T Consensus 104 ~g~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V~~ 146 (205)
T 3r8n_D 104 MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp TSSCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBCCS
T ss_pred hcchhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEecC
Confidence 5788999999999999999999999999999887779999965
No 18
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=94.51 E-value=0.04 Score=47.69 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=49.5
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc-----CCce-EEEEEcCCC
Q 026062 24 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK-----TNEN-FRLLYDTKG 89 (244)
Q Consensus 24 iPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k-----t~e~-yRvl~d~kg 89 (244)
+-|--||.... ..+.++|++.+.+|.|+|||+++++..+++---|+|+++. .+++ |-++.-+.|
T Consensus 3 ~RLd~~L~~~~--~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~~~i~~ed~~~~lvvnKP~G 72 (243)
T 1vio_A 3 LRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDELLTWIEEGQYFMLNKPQG 72 (243)
T ss_dssp EEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTEECCSSCCCCEEEEEECTT
T ss_pred ccHHHHHHHcC--CCCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCCEEEEeccccccCCCCEEEEEECCCC
Confidence 45677888763 6789999999999999999999988888887778998853 2445 555555555
No 19
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=94.28 E-value=0.11 Score=41.80 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 139 NDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 139 ~Dtv~i~l~~~kI~d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
|+.+ .+....+.-.+| +.|+.+||..|.|.|.+|++.++..
T Consensus 56 g~~v--~v~q~~LETViP-~~g~~V~Iv~G~~rG~~g~L~~id~ 96 (127)
T 2ckk_A 56 GDKL--KLDQTHLETVIP-APGKRILVLNGGYRGNEGTLESINE 96 (127)
T ss_dssp CCEE--EEEGGGEEECCC-CTTCEEEECSSTTTTCEEEEEEEEG
T ss_pred CCEE--EEchHHcEEecC-CCCCEEEEEecccCCcEEEEEEEeC
Confidence 4444 444444555666 8999999999999999999999954
No 20
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=93.87 E-value=0.086 Score=47.47 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=53.0
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEecc--------CCceEEEEEcCCCc
Q 026062 22 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPK--------TNENFRLLYDTKGR 90 (244)
Q Consensus 22 ~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~k--------t~e~yRvl~d~kgr 90 (244)
+++-|--||.+. +++ +.++|++.+.+|.|.|||+++ +..+.+---|+|++.- .+++|-++.-+.|-
T Consensus 5 ~g~RLdk~La~~-g~~-SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~~~~i~~~~~ed~~~lvvnKP~G~ 78 (290)
T 3dh3_A 5 SSVRLNKYISES-GIC-SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVNGQLIEPREAEDLVLIALNKPVGI 78 (290)
T ss_dssp CCEEHHHHHHTT-TSS-CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEETTEEECCCCGGGCCEEEEEECTTC
T ss_pred cchHHHHHHHhC-CCC-CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEeccccccccccccceEEEEECCCcc
Confidence 467788899886 555 899999999999999999998 7888776669999852 24567777777773
No 21
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=93.80 E-value=0.016 Score=42.97 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=39.1
Q ss_pred hHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceE
Q 026062 26 LILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENF 81 (244)
Q Consensus 26 L~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~y 81 (244)
|--+|.. ++++.+...|++++.+|.|+|||+++ +..|.+---|+|+|...++.+
T Consensus 3 LD~~L~~-~~~~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~ 56 (92)
T 2k6p_A 3 IDKFLQS-VGLVKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIE 56 (92)
T ss_dssp HHHHSTT-TTSCCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCE
T ss_pred HHHHHHH-CCCCCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceE
Confidence 3345554 24555556699999999999999997 677888666999996544443
No 22
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=92.23 E-value=0.054 Score=48.86 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 026062 22 ECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 75 (244)
Q Consensus 22 ~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~ 75 (244)
.++.|--+|...+ ...+.++|++.+.+|.|+|||+++++..+++---|+|++.
T Consensus 15 ~g~RLd~~L~~~~-~~~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 15 LGQRLDQALAEMF-PDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp ------------------------------------------------------
T ss_pred CCchHHHHHHhhc-cccCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 3566777777654 3467899999999999999999978888888777999985
No 23
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.10 E-value=0.0039 Score=53.95 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=38.9
Q ss_pred hcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEec
Q 026062 34 LKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIP 75 (244)
Q Consensus 34 LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~ 75 (244)
+++|.|.++|++.+.+|.|.|||++++++.|.|-.=|++.|.
T Consensus 118 ~G~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~ 159 (195)
T 3iz6_C 118 AGMAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHID 159 (195)
T ss_dssp CCCHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSC
T ss_pred ccccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEE
Confidence 589999999999999999999999999999999888887774
No 24
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=91.88 E-value=0.13 Score=43.29 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=54.0
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE-----------Eec---cCCceEEEEEcCCCc
Q 026062 25 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV-----------SIP---KTNENFRLLYDTKGR 90 (244)
Q Consensus 25 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVI-----------sI~---kt~e~yRvl~d~kgr 90 (244)
+|+=+|- ..++|.+.+|||+.+.||-|+|||....|..-|.++||-= .+. -.+..|-+|---|.+
T Consensus 51 ~ivdlLv-~aGLa~SKsEARRlI~qGGv~VNg~kv~~~~~~~~i~~~~~~~tpi~d~~~~it~~dli~g~~liLRkGKK~ 129 (164)
T 2ktl_A 51 TFSKVLW-SAGLVASKSEGQRIINNNGAYVGSRPGVKKNEPGGGMPDDLTFTPIKTWNASKTQEFIIDGDLLILKLGKWK 129 (164)
T ss_dssp SHHHHHH-HHTSCSTHHHHHHHHHHTCEEEEECCSCCCCCCCSSSCSSSCCCCCCCCSHHHHHHHTTCSSCEEEEESSSC
T ss_pred cHHHHHH-HhCcccCHHHHHHHHHhCCEEECCEecccccccccccccccccccccccccccCHHHhcCCcEEEEEcCCee
Confidence 3444454 3699999999999999999999999888844477777641 111 135567777777778
Q ss_pred eEEEEcChhh
Q 026062 91 FRLHSLRDEE 100 (244)
Q Consensus 91 f~l~~I~~eE 100 (244)
|.++.+..+|
T Consensus 130 ~~lI~~~~de 139 (164)
T 2ktl_A 130 MKLVSIVSDE 139 (164)
T ss_dssp EEEEECCCHH
T ss_pred EEEEEEeccH
Confidence 8877765444
No 25
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.67 E-value=0.29 Score=46.50 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.3
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCc
Q 026062 23 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAG 67 (244)
Q Consensus 23 siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG 67 (244)
.++++=+|.. .++|.+..||++.+.||-|+|||..++|..+-+.
T Consensus 368 ~~~~~~~l~~-~~l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~ 411 (432)
T 1h3f_A 368 RIWVARLFTL-AGLTPSNAEARRLIQNRGLRLDGEVLTDPMLQVD 411 (432)
T ss_dssp EEEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTEECCCTTCEEE
T ss_pred cCcHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEecCccceec
Confidence 4567777775 6999999999999999999999999999987554
No 26
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.48 E-value=0.38 Score=45.79 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=48.7
Q ss_pred hhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEc
Q 026062 25 PLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 96 (244)
Q Consensus 25 PL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I 96 (244)
++.=+|.. .++|.+..||++.+.||-|+|||..++|..+.+.--|.+ +..|-+|---|.+|..+.+
T Consensus 357 ~~~~ll~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~~~~-----~~~~~~l~~GKk~~~~v~~ 422 (432)
T 2jan_A 357 GIVDLLVA-SGLSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSSDFL-----HGRWLVLRRGKRSIAGVER 422 (432)
T ss_dssp SHHHHHHH-HTSCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGGGSB-----TTTEEEEESSSSCEEEEEE
T ss_pred hHHHHHHH-hCCcccHHHHHHHHHhCCEEECCEEccChhcccChhhcc-----CCcEEEEEeCCeeEEEEEE
Confidence 56767764 799999999999999999999999999999877544332 2244455555555555544
No 27
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=90.36 E-value=0.15 Score=45.89 Aligned_cols=52 Identities=6% Similarity=-0.220 Sum_probs=43.2
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECC-E-EeccccCCCcceeEEEecc
Q 026062 24 LPLILVLRNRLKYALTYREVIAILMQRHVLVDG-K-VRTDKTYPAGFMDVVSIPK 76 (244)
Q Consensus 24 iPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDG-k-vr~D~k~PvG~mDVIsI~k 76 (244)
+-|-.+|-. .+++.+..+|++.|++|.|.||| + +.+++.+.|---|.|++..
T Consensus 7 ~RLD~~L~~-~g~~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~I~v~g 60 (291)
T 3hp7_A 7 ERVDVLAYK-QGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKG 60 (291)
T ss_dssp EEHHHHHHH-TTSSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEETT
T ss_pred hhHHHHHHH-cCCcccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCEEEEcc
Confidence 346666655 47889999999999999999999 8 8888888877779999963
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=86.81 E-value=0.12 Score=48.73 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEE
Q 026062 23 CLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVV 72 (244)
Q Consensus 23 siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVI 72 (244)
.++|.=+|.. .++|.+..|||+.+.||-|+|||.+++|..+.+.--|.+
T Consensus 352 ~i~l~~lL~~-agl~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~dl~ 400 (420)
T 1jil_A 352 TTNIVEVLIE-TGISPSKRQAREDVNNGAIYINGERQQDVNYALAPEDKI 400 (420)
T ss_dssp --------------------------------------------------
T ss_pred cccHHHHHHH-cCCccCHHHHHHHHHhCCEEECCEEecccccccCccccc
Confidence 4567767764 799999999999999999999999999998766544443
No 29
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=84.40 E-value=1.2 Score=35.56 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=41.1
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcC-----CCCeEe--EeeceEEEEc
Q 026062 153 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA-----LGHEFA--TRLGNVFTIG 211 (244)
Q Consensus 153 d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~-----~g~~F~--T~~~~vfvIG 211 (244)
..+++..|+.++|+.|..-|..|+|..+.. ..+.|+|+.- +|.+++ -..|||+++-
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~---k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~ 101 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDL---DKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTD 101 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEET---TTTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEEC---CCCEEEEeCeEeEcCCCCEEEeeechHHEEEEe
Confidence 457889999999999999999999999853 2356666654 344443 3457777665
No 30
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=82.15 E-value=1.9 Score=34.88 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=39.5
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEc
Q 026062 153 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIG 211 (244)
Q Consensus 153 d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG 211 (244)
-.++...|+.++|+.|+.-|..|+|..+-... +.|+||. .+|.+.+ ...|||+++-
T Consensus 46 rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk---~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~ 108 (127)
T 3u5e_Y 46 KALPIRRDDEVLVVRGSKKGQEGKISSVYRLK---FAVQVDKVTKEKVNGASVPINLHPSKLVITK 108 (127)
T ss_dssp CEEECCTTCEEEECSSTTTTCEEEEEEEEGGG---TEEEEETCEEECSSSCEEECCBCGGGEEEEE
T ss_pred CcccccCCCEEEEeecCCCCccceEEEEECCC---CEEEEeCeEEECCCCcEEEcccchHHEEEEc
Confidence 35788899999999999999999999985432 4566554 4554433 3446666554
No 31
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=81.11 E-value=0.31 Score=46.16 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred chhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcce
Q 026062 24 LPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFM 69 (244)
Q Consensus 24 iPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~m 69 (244)
+++.=+|.. .++|.+..|||+.+.||-|+|||..++|..+.+.--
T Consensus 352 ~~~~~~l~~-~gl~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~ 396 (419)
T 2ts1_A 352 VPLVELLVS-AGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAE 396 (419)
T ss_dssp ----------------------------------------------
T ss_pred ccHHHHHHH-hCCCCCHHHHHHHHHhCCEEECCEEecCcccccChh
Confidence 556666664 799999999999999999999999999998766433
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=80.84 E-value=3.9 Score=27.68 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=31.3
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 026062 155 IKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 199 (244)
Q Consensus 155 i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~ 199 (244)
+.|++|+.+.|+.|.-.|..|+|.++.... ..-.|.++ .-|++
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k-~~v~V~v~-~~Gr~ 45 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPER-GKVKVMVT-IFGRE 45 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTT-TEEEEEEE-SSSSE
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCC-CEEEEEEE-eCCCE
Confidence 468899999999999999999999985321 22344443 44444
No 33
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.82 E-value=2.1 Score=34.26 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=38.4
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeE--eEeeceEEEEc
Q 026062 153 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEF--ATRLGNVFTIG 211 (244)
Q Consensus 153 d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F--~T~~~~vfvIG 211 (244)
..+++..|+.+.|+.|+.-|..|+|..+... .+.|+||. .+|.+. -...|||+++-
T Consensus 42 r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k---~~~V~VEgvn~~k~~G~~~e~pIh~SNV~l~~ 104 (121)
T 3j21_U 42 RNLPVRVGDKVRIMRGDYKGHEGKVVEVDLK---RYRIYVEGATLRKTNGTEVFYPIHPSNVMIIE 104 (121)
T ss_dssp SEEECCSSSEEEECSSSCSSEEEEEEEEETT---TTEEEETTCEEECSSSCEEECCBCGGGEEEEE
T ss_pred cccccccCCEEEEeecCCCCcEeEEEEEEec---CCEEEEeCeEEEecCCcEEEcccCHHHeEEEc
Confidence 3578899999999999999999999998532 24555543 344332 23345665554
No 34
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=73.50 E-value=3.5 Score=34.18 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=47.1
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeEe--EeeceEEEEccCCCceEecCCCcc
Q 026062 153 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEFA--TRLGNVFTIGKGSKPWVSLPKGKG 225 (244)
Q Consensus 153 d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F~--T~~~~vfvIG~~~kp~islp~~~g 225 (244)
-.+++..|+.++|+.|+.-|..|+|..+... .+.|+|+. .+|.+.+ ...|||+++-- .+ ++
T Consensus 45 Rs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~k---k~~V~VEGVN~~K~~G~~~eapIh~SNV~i~~~------k~--dk- 112 (150)
T 3iz5_Y 45 RSIPIRKDDEVQVVRGSYKGREGKVVQVYRR---RWVIHVERITREKVNGSTVNVGIHPSKVVVTKL------KL--DK- 112 (150)
T ss_dssp SEEECCSSSEEEECSSTTTTCEEEEEEEETT---TTEEEETTCEEECTTSCEEECCBCGGGEEEEEC------CC--CS-
T ss_pred cccccCCCCEEEEeecCCCCccceEEEEEcC---CCEEEEeCcEEEeCCCCEEecccchHHEEEEcc------cC--Ch-
Confidence 3578889999999999999999999998542 23455433 5554332 34467766652 11 22
Q ss_pred eeeehHHHHHH
Q 026062 226 IKLSIIEEARK 236 (244)
Q Consensus 226 i~~~~~~~~~~ 236 (244)
-|..++|.+.+
T Consensus 113 ~R~~~lerk~~ 123 (150)
T 3iz5_Y 113 DRKAILDRKAS 123 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccchh
Confidence 56666666553
No 35
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=71.11 E-value=2.5 Score=33.25 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=25.3
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 026062 155 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 183 (244)
Q Consensus 155 i~f~~G~~~~v~gG~n~G~vG~I~~i~~~ 183 (244)
+++..|+.+.|+.|+.-|..|+|.++...
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 33 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVLPK 33 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEEGG
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEECC
Confidence 46778999999999999999999998643
No 36
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=71.07 E-value=3.6 Score=31.87 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.6
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 156 KFDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 156 ~f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
++..|+.++|+.|+.-|..|+|.++..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~ 29 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLS 29 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEET
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEe
Confidence 456799999999999999999999854
No 37
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=69.28 E-value=5.9 Score=32.25 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=45.2
Q ss_pred eEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc-----CCCCeE--eEeeceEEEEccCCCceEecCCCcc
Q 026062 153 DFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD-----ALGHEF--ATRLGNVFTIGKGSKPWVSLPKGKG 225 (244)
Q Consensus 153 d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d-----~~g~~F--~T~~~~vfvIG~~~kp~islp~~~g 225 (244)
-.++...|+.++|+.|+.-|..|+|..+-.. .+.|+||. .+|.+. -...|||+++-- .-..
T Consensus 45 Rs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~k---k~~V~VEgVn~~K~~G~~~e~pIh~SNV~i~~~---------k~dk 112 (135)
T 4a17_S 45 RSMPVRKDDEVLIVRGKFKGNKGKVTQVYRK---KWAIHVEKISKNKLNGAPYQIPLSASQLVLTKL---------KLDK 112 (135)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETT---TTEEEETTCCEEETTTEEECCCBCGGGEEEEEC---------CCCH
T ss_pred CcccccCCCEEEEeecCCCCceeeEEEEEcC---CCEEEEeCeEEEcCCCCEEEcccchHHEEEEcc---------cCCc
Confidence 3577888999999999999999999998532 24555543 455332 233456665542 2122
Q ss_pred eeeehHHHHH
Q 026062 226 IKLSIIEEAR 235 (244)
Q Consensus 226 i~~~~~~~~~ 235 (244)
-|..++|.+.
T Consensus 113 ~R~~~lerk~ 122 (135)
T 4a17_S 113 SRQSLLTRKA 122 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 5566666654
No 38
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=68.56 E-value=5.3 Score=30.54 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.0
Q ss_pred CcEEEEECCCcceeEEEEEeEEE
Q 026062 160 GNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 160 G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
|+.++|+.|+.-|..|+|.++..
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~ 23 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIR 23 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEC
Confidence 78899999999999999999864
No 39
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=67.86 E-value=4.1 Score=32.85 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=27.4
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 192 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i 192 (244)
.|+|-.|++..|.++|+.++|.+|..+ +.|.|
T Consensus 7 vevGRVv~i~~G~~aGklavIVdIID~----nrvLV 38 (126)
T 4a18_F 7 VQVGRVVYINYGADKGKLAVIVNIINQ----NRILI 38 (126)
T ss_dssp EETTEEEEECSSTTTTEEEEEEEEETT----TEEEE
T ss_pred eecceEEEEccCCccCCEEEEEEEecC----CeEEE
Confidence 478999999999999999999999654 45555
No 40
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=67.56 E-value=3.9 Score=32.23 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.1
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEc
Q 026062 156 KFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQD 194 (244)
Q Consensus 156 ~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d 194 (244)
++..|+.+.|+.|+.-|..|+|.++.. ..+.|+|+.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~---~~~~V~VEG 50 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALP---RDQKVVVEG 50 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEET---TTTEEEESS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEC---CCCEEEEeC
Confidence 778899999999999999999999853 234566654
No 41
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=63.60 E-value=3.9 Score=33.66 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=38.5
Q ss_pred EEEeeCCcEEEEECCCcceeE-EEEEeEEEecCCccEEEEEcCC-----CCeEe--EeeceEEEEc
Q 026062 154 FIKFDVGNIVMVTGGRNRGRV-GIIKNREKHKGSFETIHIQDAL-----GHEFA--TRLGNVFTIG 211 (244)
Q Consensus 154 ~i~f~~G~~~~v~gG~n~G~v-G~I~~i~~~~~s~~~v~i~d~~-----g~~F~--T~~~~vfvIG 211 (244)
.+++..|+.+.|+.|+.-|.. |+|..+... .+.|+|+.-+ |.+++ ...+||+++-
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k---~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~ 108 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRK---KYVIYIERVQREKANGTTVHVGIHPSKVVITR 108 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETT---TTEEEETTCEEECSSCCEEECCBCGGGEEECC
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECC---CCEEEEeeeEeEcCCCceEEeccCHHHEEEEc
Confidence 367888999999999999999 999998532 3456665433 43322 2357777664
No 42
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=59.43 E-value=5 Score=32.63 Aligned_cols=26 Identities=23% Similarity=0.544 Sum_probs=23.8
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
.|+|-+|++..|+++|+..+|.+|..
T Consensus 7 vevGRVV~i~~Gr~aGk~avIV~iiD 32 (134)
T 3iz5_N 7 VEIGRVALVNYGKDYGRLVVIVDVVD 32 (134)
T ss_dssp CCSSEEEECSCCSSSCCEEEEEEECS
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEcC
Confidence 47899999999999999999999954
No 43
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.80 E-value=4.8 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=25.0
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEE
Q 026062 155 IKFDVGNIVMVTGGRNRGRVGIIKNRE 181 (244)
Q Consensus 155 i~f~~G~~~~v~gG~n~G~vG~I~~i~ 181 (244)
..|++|+.+-|+.|.=.|..|+|.++.
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd 32 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVD 32 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCB
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEe
Confidence 468999999999999999999999985
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=56.35 E-value=25 Score=26.92 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred eEEEccCceeEecC-----C-CCccCCCeEEEecCCCeeeeEEEeeCCcEEEE
Q 026062 119 PYINTYDGRTIRYP-----D-PLIKANDTIKLDLEENKITDFIKFDVGNIVMV 165 (244)
Q Consensus 119 ~ql~~hDGrni~~~-----d-~~ik~~Dtv~i~l~~~kI~d~i~f~~G~~~~v 165 (244)
..+.+..|+++.++ | ..+++|++|-++-.+..|++.+|.+.+..+.+
T Consensus 52 ~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~ 104 (109)
T 2wg5_A 52 VVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYG 104 (109)
T ss_dssp EEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC---------
T ss_pred EEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchh
Confidence 33444556664332 3 46999999999999999999999999877643
No 45
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=51.78 E-value=9.4 Score=31.42 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.0
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEe
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREKH 183 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~~ 183 (244)
+++|..|+|..|+++|+-++|..+...
T Consensus 5 ~kpGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 5 LKYGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp CCTTEEEEECSSTTTTCEEEEEEEESS
T ss_pred ccCCeEEEEecCCcCCCEEEEEEecCC
Confidence 578999999999999999999988543
No 46
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=51.15 E-value=8.1 Score=31.54 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=26.9
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEE
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHI 192 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i 192 (244)
.++|-+|++..|+++|+..+|.+|..+ +.|.|
T Consensus 15 ve~GrVV~i~~Gr~aGk~avIV~iiD~----~rVLV 46 (138)
T 3izc_N 15 VEVGRVVLIKKGQSAGKLAAIVEIIDQ----KKVLI 46 (138)
T ss_dssp SSTTEEEECCSCSSSCCEEEEEEECSS----SEEEE
T ss_pred cccCeEEEEeeCCCCCCEEEEEEEecC----CEEEE
Confidence 478999999999999999999999543 45655
No 47
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.70 E-value=7.5 Score=28.88 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.3
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
+++|.+|++..|+..|+..+|.++..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD 29 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIID 29 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcC
Confidence 67899999999999999999998743
No 48
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=49.46 E-value=8.9 Score=29.02 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=34.1
Q ss_pred eeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCC----CCeEeEeeceEEEEc
Q 026062 157 FDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDAL----GHEFATRLGNVFTIG 211 (244)
Q Consensus 157 f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~----g~~F~T~~~~vfvIG 211 (244)
+++|..|++..|++.|+..+|.++.. . +.+.|-|.. ...-.....++....
T Consensus 4 v~~GrVv~~~~Gr~~Gk~~VIv~~iD--~--~~vLV~gp~~~~~~~rk~~n~khl~~T~ 58 (96)
T 2joy_A 4 IEVGRICVKVKGREAGSKCVIVDIID--D--NFVLVTGPKDITGVKRRRVNILHLEPTD 58 (96)
T ss_dssp SSTTEEEECSSSSTTCCEEEEEEECS--S--SCEEEECCTTTTCCCCEEESCSSCEEEE
T ss_pred cccCEEEEEeecCCCCCEEEEEEEeC--C--CEEEEECCcccCCcCCEEEchHHEEEee
Confidence 57899999999999999999998842 1 345555443 122344455555444
No 49
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=41.41 E-value=14 Score=29.41 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEeeCCcEEEEECCCcceeEEEEEeEEEe
Q 026062 155 IKFDVGNIVMVTGGRNRGRVGIIKNREKH 183 (244)
Q Consensus 155 i~f~~G~~~~v~gG~n~G~vG~I~~i~~~ 183 (244)
..|++|+.+-|+.|.-.|..|+|.++..+
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~ 118 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDES 118 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETT
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCC
Confidence 46899999999999999999999999643
No 50
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.42 E-value=49 Score=29.38 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEecCCccEEEEEcCCCCe
Q 026062 134 PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHE 199 (244)
Q Consensus 134 ~~ik~~Dtv~i~l~~~kI~d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~~s~~~v~i~d~~g~~ 199 (244)
..+++|++|.++ ++..|++.++|+. +|.+-++.|+- ++ .+.+.|-+..|++
T Consensus 133 e~LkPG~rVaLN-eSlaVVevLp~E~-----------~Gev~tv~E~l--~d-~~R~lV~~~~~ee 183 (251)
T 3m9b_A 133 ASLKKGQTVRLN-EALTVVEAGTFEA-----------VGEISTLREIL--AD-GHRALVVGHADEE 183 (251)
T ss_dssp TTSCSSCEEEEC-TTCCBCCCCCCCC-----------CSEEEEEEEEC--TT-SSEEEEECSSSCE
T ss_pred HHCCCCCEEEeC-CccEEEEecCCCC-----------cccEEEEEEEe--cC-CCEEEEecCCCce
Confidence 469999999996 7999999999987 56777776663 11 1344445555554
No 51
>2x1d_A Acyl-coenzyme A\:6-aminopenicillanic-acid-acyltransferase 40 kDa form; zymogen, NTN-hydrolase, penicillin biosynthesis; 1.64A {Penicillium chrysogenum} PDB: 2x1e_A* 2x1c_A
Probab=36.45 E-value=66 Score=28.24 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=25.9
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCc
Q 026062 22 ECLPLILVLRNRLKYALTYREVIAILMQR 50 (244)
Q Consensus 22 ~siPL~i~LRd~LkyA~t~rEak~Il~~~ 50 (244)
..+|...++|..|. +.|.+||..+|.+-
T Consensus 177 ~g~~~~~~~r~vL~-~~tv~eav~~l~~~ 204 (357)
T 2x1d_A 177 TGVPSHIALRIALE-STSPSQAYDRIVEQ 204 (357)
T ss_dssp TSBCHHHHHHHHHT-CSSHHHHHHHHHHT
T ss_pred CCccHhHHHHHHhc-CCCHHHHHHHHHHh
Confidence 57999999999999 99999999999854
No 52
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=34.81 E-value=1.1e+02 Score=21.93 Aligned_cols=54 Identities=26% Similarity=0.573 Sum_probs=34.5
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 026062 37 ALTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 94 (244)
Q Consensus 37 A~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~mDVIsI~kt~--e~yRvl~d~kgrf~l~ 94 (244)
..+..||.++|.+.. .||- ||.....|--+ ++|+-..+ .|||+..+..|.|.+.
T Consensus 9 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 66 (103)
T 1i3z_A 9 CLTKRECEALLLKGG--VDGNFLIRDSESVPGAL--CLCVSFKKLVYSYRIFREKHGYYRIE 66 (103)
T ss_dssp SCCHHHHHHHHHTTC--STTEEEEEECSSSTTCE--EEEEECSSSEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHhhcC--CCceEEEEeCCCCCCCE--EEEEEECCEEEEEEEEECCCCeEEEe
Confidence 347899999998643 4665 56554444323 67764332 5888887777777653
No 53
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=34.40 E-value=67 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=26.1
Q ss_pred EEEeeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 154 FIKFDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 154 ~i~f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
...|++|+.+.|+.|.=.|..|+|.++..
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~ 153 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDY 153 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEET
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeC
Confidence 34789999999999999999999999864
No 54
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=30.59 E-value=66 Score=24.55 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=17.1
Q ss_pred ccEEEEEcCCCCeEeEeeceEEEEc
Q 026062 187 FETIHIQDALGHEFATRLGNVFTIG 211 (244)
Q Consensus 187 ~~~v~i~d~~g~~F~T~~~~vfvIG 211 (244)
..++.|+..+|.+..+-.+.-|...
T Consensus 54 ~~~~~i~t~~G~~i~~T~~H~~~t~ 78 (139)
T 2in0_A 54 RDVIGLRIAGGAILWATPDHKVLTE 78 (139)
T ss_dssp EEEEEEEETTSCEEEECTTCEEEET
T ss_pred cEEEEEEeCCCCEEEecCCCeEEec
Confidence 3577777777777776667666654
No 55
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=29.80 E-value=1.9e+02 Score=22.09 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=53.6
Q ss_pred CceEEECCEEeccccCCCcceeEEEeccCCceEEEEE-cCCC-ceEEEEcChhh------hc---ceeEEEeeeEEeeCC
Q 026062 49 QRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLY-DTKG-RFRLHSLRDEE------AK---FKLCKVRSVQFGQKG 117 (244)
Q Consensus 49 ~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~-d~kg-rf~l~~I~~eE------a~---~KLcKV~~k~~~~gg 117 (244)
++...+||...+-..+ ||. |.++.+...++.+.. |..| .+....-..++ +. -..+||.+....-+|
T Consensus 21 ~~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g 97 (132)
T 3kdf_D 21 DEVFRIGNVEISQVTI-VGI--IRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQN 97 (132)
T ss_dssp SSCEEETTEECCEEEE-EEE--EEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETT
T ss_pred CCcEEECCEEEEEEEE-EEE--EEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECC
Confidence 5678999999887765 566 666766666666544 6668 77766654332 11 368999999888899
Q ss_pred ceEEEccCceeE
Q 026062 118 IPYINTYDGRTI 129 (244)
Q Consensus 118 ~~ql~~hDGrni 129 (244)
..|++.+.=|.+
T Consensus 98 ~~qi~~~~ir~v 109 (132)
T 3kdf_D 98 KKSLVAFKIMPL 109 (132)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEEEEEc
Confidence 999988654444
No 56
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=29.78 E-value=1e+02 Score=22.25 Aligned_cols=54 Identities=13% Similarity=0.315 Sum_probs=33.6
Q ss_pred cccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccCC--ceEEEEEcCCCceEEE
Q 026062 37 ALTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKTN--ENFRLLYDTKGRFRLH 94 (244)
Q Consensus 37 A~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~mDVIsI~kt~--e~yRvl~d~kgrf~l~ 94 (244)
..+..||.++|.+.. .||- ||.....|-.+ ++|+--.+ .|||+..+..|.|.+.
T Consensus 10 ~isR~~Ae~lL~~~~--~~G~FLVR~S~~~~g~~--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (104)
T 1d4t_A 10 KISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (104)
T ss_dssp SCCHHHHHHHHHHHC--CTTEEEEEECSSSTTCE--EEEEEETTEEEEEEEEECTTSCEEEC
T ss_pred CCCHHHHHHHHHhcC--CCCEEEEeeCCCCCCCE--EEEEEECCeEEEEEEEECCCCeEEEe
Confidence 347899999997532 3564 45444444333 66664332 5888888778877654
No 57
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=29.03 E-value=22 Score=25.46 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=22.6
Q ss_pred cccchhHHHHHhhhcccc-cHHHHHHHHhCce
Q 026062 21 RECLPLILVLRNRLKYAL-TYREVIAILMQRH 51 (244)
Q Consensus 21 ~~siPL~i~LRd~LkyA~-t~rEak~Il~~~~ 51 (244)
.|.|||.+++ ||+|. +..||.+-+.+|+
T Consensus 24 WEmMpLMYVI---LK~A~~d~eeAsrrI~Eg~ 52 (65)
T 1zv1_A 24 WELMPLMYVI---LKDADANIEEASRRIEEGQ 52 (65)
T ss_dssp GGGHHHHHHH---HHHTTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHH---HhccCCCHHHHHHHHHHHH
Confidence 4799999986 88996 7788888777664
No 58
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Chromobacterium violaceum atcc 12472}
Probab=27.51 E-value=44 Score=29.67 Aligned_cols=30 Identities=20% Similarity=-0.037 Sum_probs=21.9
Q ss_pred CcccchhHHHHHhhhcccccHHHHHHHHhC
Q 026062 20 SRECLPLILVLRNRLKYALTYREVIAILMQ 49 (244)
Q Consensus 20 ~~~siPL~i~LRd~LkyA~t~rEak~Il~~ 49 (244)
.+...|...++|-.|.++.|..||..+|.+
T Consensus 103 ~~~g~p~~~~~r~iL~~~aTv~EAv~~L~~ 132 (299)
T 3gvz_A 103 LRADSARHGVLTRLLRDYGSLDEVASAADK 132 (299)
T ss_dssp TC------CCHHHHHHHCCSHHHHHHTHHH
T ss_pred ccCCCCHhHHHHHHHhcCCCHHHHHHHHHh
Confidence 445679999999999999999999999984
No 59
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=27.30 E-value=1e+02 Score=26.75 Aligned_cols=59 Identities=14% Similarity=0.297 Sum_probs=36.2
Q ss_pred EEEcChhhhcceeEEEeeeEEeeCCce-----EEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEee
Q 026062 93 LHSLRDEEAKFKLCKVRSVQFGQKGIP-----YINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFD 158 (244)
Q Consensus 93 l~~I~~eEa~~KLcKV~~k~~~~gg~~-----ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~ 158 (244)
++-|+. +.++..+ .+.++.++.| .+.+.||+= |.. ....++..+||..+++++..|++.
T Consensus 128 l~viD~--~t~~v~~--~I~Vg~~~~p~~~~nele~~dg~l--yvn-~~~~~~V~vID~~tg~V~~~I~~~ 191 (266)
T 2iwa_A 128 LYEIDP--HTFKLIK--KHNVKYNGHRVIRLNELEYINGEV--WAN-IWQTDCIARISAKDGTLLGWILLP 191 (266)
T ss_dssp EEEECT--TTCCEEE--EEECEETTEECCCEEEEEEETTEE--EEE-ETTSSEEEEEETTTCCEEEEEECH
T ss_pred EEEEEC--CCCcEEE--EEEECCCCcccccceeEEEECCEE--EEe-cCCCCeEEEEECCCCcEEEEEECC
Confidence 455554 2334433 3334444554 345568852 322 245788899999999999999985
No 60
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1ka7_A
Probab=26.83 E-value=1e+02 Score=23.38 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=34.3
Q ss_pred ccHHHHHHHHhCceEEECCE--EeccccCCCcceeEEEeccC--CceEEEEEcCCCceEEE
Q 026062 38 LTYREVIAILMQRHVLVDGK--VRTDKTYPAGFMDVVSIPKT--NENFRLLYDTKGRFRLH 94 (244)
Q Consensus 38 ~t~rEak~Il~~~~V~VDGk--vr~D~k~PvG~mDVIsI~kt--~e~yRvl~d~kgrf~l~ 94 (244)
.+..||.++|.+.. .||- ||.....|-.+ ++|+-.. =.|||+..+..|.|.+.
T Consensus 11 isR~eAe~lL~~~~--~~G~FLVR~S~~~~g~y--~LSv~~~~~v~H~~I~~~~~g~~~l~ 67 (128)
T 1ka6_A 11 ISRETGEKLLLATG--LDGSYLLRDSESVPGVY--CLCVLYHGYIYTYRVSQTETGSWSAE 67 (128)
T ss_dssp CCHHHHHHHHHHHC--CTTCEEEEECSSSTTCE--EEEEESSSCEEEEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHhcCC--CCCEEEEeecCCCCCCE--EEEEEeCCEEEEEEEEECCCCeEEEe
Confidence 47899999997432 3554 45444444333 7777443 35889888888887665
No 61
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=26.76 E-value=39 Score=25.13 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred EecCCCCccCCCeEEEe
Q 026062 129 IRYPDPLIKANDTIKLD 145 (244)
Q Consensus 129 i~~~d~~ik~~Dtv~i~ 145 (244)
+|..|.+|++||.|.+.
T Consensus 31 iR~nDr~~~vGD~l~l~ 47 (83)
T 3iuw_A 31 IRKNDRNFQVGDILILE 47 (83)
T ss_dssp EEECCSCCCTTCEEEEE
T ss_pred EEecccCCCCCCEEEEE
Confidence 46778889999998864
No 62
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=26.62 E-value=32 Score=28.25 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=41.0
Q ss_pred ccchhHHHHHhhhcccccHHHHHHHHhCc-----eEEECCEEeccccCCCcc---eeEEEeccCC
Q 026062 22 ECLPLILVLRNRLKYALTYREVIAILMQR-----HVLVDGKVRTDKTYPAGF---MDVVSIPKTN 78 (244)
Q Consensus 22 ~siPL~i~LRd~LkyA~t~rEak~Il~~~-----~V~VDGkvr~D~k~PvG~---mDVIsI~kt~ 78 (244)
...+|+=+||+.|++-.+ |.=+.+| .|+|||+++.---.|+.- ++|++|+-.+
T Consensus 21 p~~tLLd~LR~~lgltgt----k~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~ 81 (160)
T 3hrd_D 21 PNKRLLDLLREDFGLTSV----KEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVA 81 (160)
T ss_dssp SSSBHHHHHHTTSCCTTS----CCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTS
T ss_pred CCCCHHHHHHHhcCCCcc----ccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCC
Confidence 467999999998877443 3335555 899999999999999865 5788887644
No 63
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=25.63 E-value=51 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=21.8
Q ss_pred EEeeCCceEEEccCceeEecC-----CCCccCCCeEEEecCCCe
Q 026062 112 QFGQKGIPYINTYDGRTIRYP-----DPLIKANDTIKLDLEENK 150 (244)
Q Consensus 112 ~~~~gg~~ql~~hDGrni~~~-----d~~ik~~Dtv~i~l~~~k 150 (244)
-++..|..+-.+ .|.++..+ ++.++.||.|.|--+.++
T Consensus 73 v~vd~ga~~~l~-~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~ 115 (153)
T 1q7h_A 73 VTVDEGAEPHIL-NGSDLFAPGIVSMDDSIRKGDMIFVKSSKGY 115 (153)
T ss_dssp EEECTTTHHHHT-TTCCEEGGGEEEECTTCCTTCEEEEEETTSC
T ss_pred EEECHhHHHHHH-cCCCcCccccCcccCceeCCCEEEEEECCCC
Confidence 334444333333 36676433 567888888887776554
No 64
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=23.66 E-value=1.6e+02 Score=23.66 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=28.0
Q ss_pred eeEEEee----eEEeeCCceEEEccCceeEecCCCCccCCCeEEEe
Q 026062 104 KLCKVRS----VQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 145 (244)
Q Consensus 104 KLcKV~~----k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 145 (244)
++.+|+- .-.++..+|.+...+|.-.-..-.++++||.|.+-
T Consensus 75 ~~~~I~t~~G~~I~~T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 75 HLIRFELEDGRSFETTVDHPVLVYENGRFIEKRAFEVKEGDKVLVS 120 (185)
T ss_dssp CEEEEEETTSCEEEECSSSEEEEEETTEEEEEEGGGCCTTCEEEEC
T ss_pred eEEEEEECCCCEEEECCCCEEEEecCCeEEEEEHHHCCCCCEEEEc
Confidence 4565542 33467888888888776443344568999998863
No 65
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.50 E-value=2.3e+02 Score=21.66 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=50.2
Q ss_pred ceEEECCEEeccccCCCcceeEEEeccCCceEEEE-EcCCCceEEEEcChhh-------hc---ceeEEEeeeEEeeCCc
Q 026062 50 RHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEE-------AK---FKLCKVRSVQFGQKGI 118 (244)
Q Consensus 50 ~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl-~d~kgrf~l~~I~~eE-------a~---~KLcKV~~k~~~~gg~ 118 (244)
+...+||...+-..+ ||. |.++.....++.+. -|..|.+....-...+ +. -.++||.+.-..-+|.
T Consensus 27 ~~f~i~g~~i~~V~i-VG~--V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 27 AEFILDGAELGQLTF-VAV--VRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCCBSSSSBCCEEEE-EEE--EEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTE
T ss_pred CcEEECCEEEEEEEE-EEE--EEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCE
Confidence 567888877776653 455 56666655555543 4667877665543322 11 3689999998888999
Q ss_pred eEEEccCceeE
Q 026062 119 PYINTYDGRTI 129 (244)
Q Consensus 119 ~ql~~hDGrni 129 (244)
+||+.+.=|.+
T Consensus 104 ~qi~~~~ir~v 114 (136)
T 4gop_B 104 RSISSGHMRPV 114 (136)
T ss_dssp EEEEESEEEEC
T ss_pred EEEEEEEEEEC
Confidence 99988754444
No 66
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=22.95 E-value=2.7e+02 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=40.7
Q ss_pred CCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCCcceeEEEEEeEEEec-CCccEEEEEcCCCCeEeEeeceEEEEc
Q 026062 133 DPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK-GSFETIHIQDALGHEFATRLGNVFTIG 211 (244)
Q Consensus 133 d~~ik~~Dtv~i~l~~~kI~d~i~f~~G~~~~v~gG~n~G~vG~I~~i~~~~-~s~~~v~i~d~~g~~F~T~~~~vfvIG 211 (244)
+.+++.||.|+-+=-.+.-..=+ -||+|.+++..+ +.+..+.++=+. . -.++++|+||-
T Consensus 106 ~~~i~~GD~vvTSGl~g~fP~Gi-----------------pVG~V~~v~~~~~~~~~~i~v~p~a--d-~~~l~~V~Vi~ 165 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFNVADI-----------------PVGEVVATTHSTDYLTREVTVKLSA--D-THNVDVIELVG 165 (172)
T ss_dssp CCCCCTTCEEEEECCSSSCCEEE-----------------EEEEEEEEESTTCSSCCEEEEEESC--C-CTTCCEEEEEE
T ss_pred CCCCCCCCEEEECCCCCcCCCCC-----------------EEEEEEEEecCCCCcEEEEEEEECC--C-cccCeEEEEEe
Confidence 45788998888776554322222 389999998766 456778887443 2 35678999997
Q ss_pred c
Q 026062 212 K 212 (244)
Q Consensus 212 ~ 212 (244)
.
T Consensus 166 ~ 166 (172)
T 2qf4_A 166 N 166 (172)
T ss_dssp E
T ss_pred C
Confidence 5
No 67
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=22.82 E-value=1.4e+02 Score=21.47 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=38.9
Q ss_pred EEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEecCCCeeeeEEEeeCCcEEEEECCC
Q 026062 106 CKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGR 169 (244)
Q Consensus 106 cKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~l~~~kI~d~i~f~~G~~~~v~gG~ 169 (244)
+||...+.-+|+..-+..|..+...+. =+.-++.+..++++. ..+.+.+|...++--|.
T Consensus 17 ~rV~r~~i~PG~~~~~H~H~~~~e~~~----v~~G~~~v~~~d~~~-~~~~l~~G~~~~ip~G~ 75 (98)
T 3lag_A 17 VRVTEWRLPPGSATGHHTHGMDYVVVP----MADGEMTIVAPDGTR-SLAQLKTGRSYARKAGV 75 (98)
T ss_dssp EEEEEEEECTTEECCSEECCSCEEEEE----SSCBC-CEECTTSCE-ECCCBCTTCCEEECTTC
T ss_pred EEEEEEEECCCCccCcEECCCcEEEEE----EeccEEEEEeCCCce-EEEEecCCcEEEEcCCC
Confidence 677777888999999999988876432 222345556655543 24466778888876663
No 68
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=22.78 E-value=2.6e+02 Score=24.63 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=46.0
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 026062 21 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 99 (244)
Q Consensus 21 ~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (244)
..+|+...|+|-.|..+.|-.||+.+|.+ +.+ -+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 95 ~~~l~~~~~i~~iL~~~~tV~Ea~~~L~~--~~i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 159 (327)
T 2oqc_A 95 TVHIVPHEFVTWVLSVCQSLEDVKEKIRS--LTI-----VEKKLDLLD------TVLPLHW-ILSDRTGRNLTIEPRAD 159 (327)
T ss_dssp SEEECGGGHHHHHHHHCCSHHHHHHHGGG--EEE-----BCCCBGGGT------BCCCEEE-EEECTTSCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHc--Cce-----ecccccCcC------CccceEE-EEEcCCCCEEEEEEecC
Confidence 45899999999999999999999999986 222 233444321 1134465 46788887777776553
No 69
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=21.95 E-value=2.8e+02 Score=24.42 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=46.2
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 026062 21 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 99 (244)
Q Consensus 21 ~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (244)
...|+...|+|-.|..+.|-.||+.+|.+-. + -+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 97 ~~~l~~~~~~~~iL~~~~tV~Ea~~~l~~~~--i-----~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (329)
T 2bjf_A 97 KTNIPVYNFLLWVLANFSSVEEVKEALKNAN--I-----VDIPISENI------PNTTLHW-MISDITGKSIVVEQTKE 161 (329)
T ss_dssp SEEEEGGGHHHHHHHHCSSHHHHHHHHTTEE--E-----ECCCSSTTC------CCCCEEE-EEECTTSCEEEEEECSS
T ss_pred CCccCHHHHHHHHHHhCCCHHHHHHHHHhCc--e-----ecccccCcC------CCcceEE-EEEcCCCCEEEEEEecC
Confidence 4589999999999999999999999998632 2 233444321 1133455 46788887777777654
No 70
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.82 E-value=12 Score=32.01 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=23.1
Q ss_pred EeeCCcEEEEECCCcceeEEEEEeEEE
Q 026062 156 KFDVGNIVMVTGGRNRGRVGIIKNREK 182 (244)
Q Consensus 156 ~f~~G~~~~v~gG~n~G~vG~I~~i~~ 182 (244)
++..|+.++|+.|+.-|..|+|.++..
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~ 94 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHK 94 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred eeecCCEEEEeecCCCCceEEEEEEEC
Confidence 367899999999999999999988854
No 71
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=21.81 E-value=31 Score=33.78 Aligned_cols=59 Identities=12% Similarity=0.372 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCccCCCeEEEe
Q 026062 79 ENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLD 145 (244)
Q Consensus 79 e~yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~ik~~Dtv~i~ 145 (244)
..|.+++|. ..|.+.+.++.|.. +.+-...+..+....+.+.|.-| -+| |.+||+|.+.
T Consensus 351 ~~~~L~~~~-~ffEFip~~~~~~~-~~v~l~eVe~G~~YelViTt~~G-L~R-----Yr~GD~v~v~ 409 (581)
T 4eql_A 351 VSYTFMPNM-SYFEFIPMDGGDKN-DVVDLEDVKLGCTYEPVVTNFAG-LYR-----MRVGDIVLVT 409 (581)
T ss_dssp CCEEECTTS-SEEEEEECSTTCCS-SCEEGGGCCTTCEEEEEEECSSS-CCS-----EECCEEEEEE
T ss_pred CceeecCCc-EEEEEEeccccCCC-cEeCHHHcCCCceEEEEEeeccc-eee-----EEcCCEEEEc
Confidence 479999999 89999998765422 56666666667777777777766 334 7888888765
No 72
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=21.77 E-value=1.1e+02 Score=23.28 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.0
Q ss_pred eEEEEEeEEEecCCcc
Q 026062 173 RVGIIKNREKHKGSFE 188 (244)
Q Consensus 173 ~vG~I~~i~~~~~s~~ 188 (244)
++|+|.+.++||.+..
T Consensus 14 ~VG~I~~~e~hp~adk 29 (107)
T 1mkh_A 14 RVGKIIEVKDHPNADK 29 (107)
T ss_dssp EEEEEEEEEECTTCSS
T ss_pred EEEEEEEEEECCCCCc
Confidence 6899999999998764
No 73
>2quy_A Penicillin acylase; autoproteolysis, NTN, OXY-anion HOLE, antibiotic resistance, hydrolase, zymogen; 1.70A {Bacillus sphaericus} PDB: 3pva_A 2iwm_A 3mji_A 2z71_A* 2pva_A
Probab=21.35 E-value=53 Score=29.20 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=46.0
Q ss_pred cccchhHHHHHhhhcccccHHHHHHHHhCceEEECCEEeccccCCCcceeEEEeccCCceEEEEEcCCCceEEEEcChh
Q 026062 21 RECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDE 99 (244)
Q Consensus 21 ~~siPL~i~LRd~LkyA~t~rEak~Il~~~~V~VDGkvr~D~k~PvG~mDVIsI~kt~e~yRvl~d~kgrf~l~~I~~e 99 (244)
..++|...|+|..|..+.|..||+.+|.+-. .-+..+|... +...-|| ++-|..|+-.+++..+.
T Consensus 97 ~~~l~~~~~~r~iL~~~~tV~EA~~~L~~~~-------i~~~~~~~~~------~~~~~H~-~i~D~sG~s~viE~~~g 161 (335)
T 2quy_A 97 TRGINPVYVISQVLGNCVTVDDVIEKLTSYT-------LLNEANIILG------FAPPLHY-TFTDASGESIVIEPDKT 161 (335)
T ss_dssp CEEECGGGHHHHHHHHCCSHHHHHHHHHTEE-------EBCCCCTTTS------SCCCEEE-EEECTTCCEEEEEEETT
T ss_pred CCccCHHHHHHHHHHcCCCHHHHHHHHhhCe-------eeccccCCCC------CCcceEE-EEEcCCCCEEEEEEeCC
Confidence 4589999999999999999999999999722 2233444321 1123455 45788888877777554
No 74
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=20.92 E-value=2e+02 Score=21.50 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=39.3
Q ss_pred EEEEcCCCceEEEEcChhhhcceeEEEeeeE-EeeCCceEEEccCc---eeEecCCCCccCCCeEEEecC
Q 026062 82 RLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQ-FGQKGIPYINTYDG---RTIRYPDPLIKANDTIKLDLE 147 (244)
Q Consensus 82 Rvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~-~~~gg~~ql~~hDG---rni~~~d~~ik~~Dtv~i~l~ 147 (244)
|......|.|.+..++.++++.--|.+.+.. .......+|..... -.+.........|+++.+.-.
T Consensus 64 r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~ 133 (208)
T 3r4d_A 64 REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133 (208)
T ss_dssp SEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEE
T ss_pred eeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEE
Confidence 3334467789999999999999999998863 22223333443332 222222223667777766554
No 75
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=20.85 E-value=2.4e+02 Score=20.37 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=6.3
Q ss_pred EeeCCcEEEE
Q 026062 156 KFDVGNIVMV 165 (244)
Q Consensus 156 ~f~~G~~~~v 165 (244)
.|++|+.+.|
T Consensus 63 ~i~~Gdvv~i 72 (97)
T 3e0e_A 63 EVKKGDIAEV 72 (97)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 5666666666
No 76
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.25A {Thermotoga maritima} PDB: 3n99_A
Probab=20.44 E-value=47 Score=30.02 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=46.8
Q ss_pred CCceEEEccCceeEecCCC-----CccCCCe------------EEEecCCCeeeeEEE--eeCCcEEEEECCCcceeEEE
Q 026062 116 KGIPYINTYDGRTIRYPDP-----LIKANDT------------IKLDLEENKITDFIK--FDVGNIVMVTGGRNRGRVGI 176 (244)
Q Consensus 116 gg~~ql~~hDGrni~~~d~-----~ik~~Dt------------v~i~l~~~kI~d~i~--f~~G~~~~v~gG~n~G~vG~ 176 (244)
.+.||=.-|||.-..+|.- ++++||+ |-+..++.+--..+. -=.||.|.|+.|..-|+.|.
T Consensus 24 ~~~~yrv~~dG~p~ilP~~GGItyNv~vGD~afg~aGDHvEPgVS~~n~~~~~N~al~~~sCiGN~A~VvSG~AKG~~G~ 103 (284)
T 3dcl_A 24 MRSPYSVTTEGTVRVIPVLGGITYNVKVGDSAYGWAGDHVEPGVSVMARRKEEEIPLMTLSCIGNEVIVMSGDAKGSRGF 103 (284)
T ss_dssp CSSSCEECTTSCEECCCCSBSEESSCCTTSBSSSCBSSSCCCEEEEECSSGGGHHHHHHHCCBTCEEEECSSTTTTCEEE
T ss_pred CCCCeEECCCCCEeeccccCcEEEeeeeCCccccccccccCCCccccCCCcCcccceeEEeecCceeEEeecccCCCcce
Confidence 4566667788887766643 5666665 334444333100000 01599999999999999999
Q ss_pred EEeEEEecCCc-cEEEE
Q 026062 177 IKNREKHKGSF-ETIHI 192 (244)
Q Consensus 177 I~~i~~~~~s~-~~v~i 192 (244)
+..- |-|+. -+|++
T Consensus 104 VtGk--HGGieHVlV~F 118 (284)
T 3dcl_A 104 VTGK--HGGVNHVLVHF 118 (284)
T ss_dssp EEEE--ETTTTEEEEEC
T ss_pred Eecc--cCCeeeEEEEC
Confidence 9874 66765 34444
No 77
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=20.01 E-value=93 Score=22.43 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=31.9
Q ss_pred EEEEEcCCCceEEEEcChhhhcceeEEEeeeEEeeCCceEEEccCceeEecCCCCc
Q 026062 81 FRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLI 136 (244)
Q Consensus 81 yRvl~d~kgrf~l~~I~~eEa~~KLcKV~~k~~~~gg~~ql~~hDGrni~~~d~~i 136 (244)
.|..-|..|.|.+ ||.| +- +++|.++|.--||..|-+|-...
T Consensus 5 ~RtWtDrtG~F~V------eA~f--lg------~~dgki~LhK~nGv~I~VP~~kl 46 (68)
T 2hbp_A 5 SRLWVDRSGTFKV------DAEF--IG------CAKGKIHLHKANGVKIAVAADKL 46 (68)
T ss_dssp SEEEEBSSSCCEE------EEEE--EE------EETTEEEEECTTSCEEEEETTSB
T ss_pred ccEEEcCCCCeEE------EEEE--EE------EeCCEEEEEecCCcEEEeEhHHc
Confidence 4889999999965 5643 22 45899999999999998775543
Done!