Query 026063
Match_columns 244
No_of_seqs 212 out of 1443
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 4.3E-39 9.2E-44 285.8 22.5 221 11-233 18-261 (262)
2 KOG2620 Prohibitins and stomat 100.0 8.3E-39 1.8E-43 277.2 18.6 229 12-243 32-295 (301)
3 PRK11029 FtsH protease regulat 100.0 8.2E-33 1.8E-37 252.9 21.3 214 11-234 49-327 (334)
4 TIGR01933 hflK HflK protein. H 100.0 6.7E-32 1.5E-36 239.0 20.9 204 11-221 23-250 (261)
5 TIGR01932 hflC HflC protein. H 100.0 1.7E-31 3.6E-36 243.3 21.4 211 12-232 50-315 (317)
6 PRK10930 FtsH protease regulat 100.0 3.5E-31 7.5E-36 248.4 20.6 202 12-221 120-345 (419)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.7E-30 3.7E-35 227.1 19.1 193 11-208 24-241 (242)
8 COG0330 HflC Membrane protease 100.0 4.2E-30 9.2E-35 230.6 20.1 188 33-225 92-280 (291)
9 cd03404 Band_7_HflK Band_7_Hfl 100.0 6.5E-29 1.4E-33 220.4 19.4 170 34-209 94-266 (266)
10 cd03403 Band_7_stomatin_like B 99.9 2.2E-25 4.8E-30 191.4 17.5 173 11-220 20-214 (215)
11 KOG2621 Prohibitins and stomat 99.9 2.5E-26 5.4E-31 201.4 10.6 178 9-225 77-275 (288)
12 KOG3090 Prohibitin-like protei 99.9 1.4E-23 3.1E-28 179.0 12.4 185 1-222 77-273 (290)
13 cd03406 Band_7_3 A subgroup of 99.8 4.8E-20 1E-24 165.2 16.7 146 12-159 29-211 (280)
14 cd03402 Band_7_2 A subgroup of 99.8 8.3E-21 1.8E-25 164.8 10.8 128 12-140 26-180 (219)
15 cd03401 Band_7_prohibitin Band 99.8 4.3E-20 9.2E-25 156.5 13.9 81 52-132 90-170 (196)
16 KOG3083 Prohibitin [Posttransl 99.8 1.3E-19 2.8E-24 154.7 9.1 182 1-223 66-264 (271)
17 PF01145 Band_7: SPFH domain / 99.6 3.4E-14 7.3E-19 117.3 13.0 130 10-140 21-178 (179)
18 smart00244 PHB prohibitin homo 99.6 1.3E-14 2.9E-19 117.8 9.6 113 11-123 25-159 (160)
19 cd03399 Band_7_flotillin Band_ 99.4 1E-12 2.2E-17 104.5 6.0 88 33-121 29-125 (128)
20 cd03400 Band_7_1 A subgroup of 99.3 5.3E-12 1.2E-16 99.7 7.6 72 52-123 51-123 (124)
21 KOG2668 Flotillins [Intracellu 99.3 9.7E-11 2.1E-15 106.2 15.6 146 60-210 102-366 (428)
22 cd03408 Band_7_5 A subgroup of 99.2 2.5E-11 5.5E-16 103.3 7.1 89 34-123 107-206 (207)
23 cd02106 Band_7 The band 7 doma 99.2 1.6E-10 3.5E-15 88.6 9.3 91 33-123 29-120 (121)
24 COG2268 Uncharacterized protei 98.7 2.7E-07 5.9E-12 89.0 14.8 147 8-156 62-247 (548)
25 KOG2962 Prohibitin-related mem 98.6 3.5E-06 7.6E-11 73.2 16.8 143 12-156 47-226 (322)
26 PF13421 Band_7_1: SPFH domain 98.0 5.4E-05 1.2E-09 65.6 9.8 88 35-123 108-206 (211)
27 cd03405 Band_7_HflC Band_7_Hfl 97.6 0.00018 3.9E-09 62.8 7.7 89 87-183 121-210 (242)
28 PTZ00491 major vault protein; 97.4 0.0023 5.1E-08 64.8 12.9 77 43-120 563-649 (850)
29 PRK11029 FtsH protease regulat 97.3 0.0017 3.8E-08 59.9 10.1 73 104-183 202-275 (334)
30 TIGR01932 hflC HflC protein. H 97.3 0.0021 4.5E-08 58.9 10.0 73 103-182 191-264 (317)
31 COG4260 Membrane protease subu 97.2 0.0022 4.7E-08 57.6 8.5 89 35-124 135-234 (345)
32 TIGR01933 hflK HflK protein. H 97.0 0.0064 1.4E-07 53.8 10.5 73 104-183 134-207 (261)
33 cd03404 Band_7_HflK Band_7_Hfl 96.9 0.0049 1.1E-07 54.6 8.5 146 44-207 94-248 (266)
34 cd03407 Band_7_4 A subgroup of 96.9 0.003 6.5E-08 56.1 6.9 74 104-184 128-202 (262)
35 KOG2620 Prohibitins and stomat 96.8 0.0035 7.6E-08 55.7 6.2 131 111-241 125-290 (301)
36 PRK10930 FtsH protease regulat 95.9 0.044 9.5E-07 52.2 9.1 130 44-182 163-302 (419)
37 COG0330 HflC Membrane protease 94.6 0.12 2.6E-06 46.2 7.3 163 11-183 44-230 (291)
38 COG2268 Uncharacterized protei 93.7 0.86 1.9E-05 44.8 11.3 73 148-222 411-491 (548)
39 cd03401 Band_7_prohibitin Band 91.2 0.47 1E-05 39.7 5.5 58 103-164 136-194 (196)
40 COG1580 FliL Flagellar basal b 90.3 0.89 1.9E-05 37.8 6.1 67 44-111 85-157 (159)
41 PRK01558 V-type ATP synthase s 88.0 4 8.8E-05 34.8 8.8 48 115-162 7-54 (198)
42 KOG3083 Prohibitin [Posttransl 87.5 0.67 1.5E-05 40.6 3.7 26 157-182 201-226 (271)
43 COG2811 NtpF Archaeal/vacuolar 86.3 14 0.0003 28.8 10.6 65 118-182 7-88 (108)
44 KOG2668 Flotillins [Intracellu 85.8 2.3 5E-05 39.6 6.3 55 130-184 302-361 (428)
45 cd03403 Band_7_stomatin_like B 85.2 1.5 3.4E-05 37.1 4.7 26 148-173 156-181 (215)
46 PTZ00491 major vault protein; 85.0 7.2 0.00016 40.3 9.9 23 98-120 631-653 (850)
47 PRK01558 V-type ATP synthase s 84.1 4.2 9.1E-05 34.7 6.9 8 213-220 119-126 (198)
48 PRK02292 V-type ATP synthase s 81.0 12 0.00026 31.2 8.5 44 119-162 5-48 (188)
49 PRK02292 V-type ATP synthase s 80.8 14 0.00029 31.0 8.8 20 128-147 25-44 (188)
50 PF03748 FliL: Flagellar basal 80.3 7.3 0.00016 28.7 6.3 51 58-110 44-96 (99)
51 PLN03086 PRLI-interacting fact 80.0 4.1 9E-05 40.4 6.0 27 200-231 80-106 (567)
52 cd03406 Band_7_3 A subgroup of 74.4 5.5 0.00012 36.0 4.8 58 104-169 144-210 (280)
53 TIGR01147 V_ATP_synt_G vacuola 73.7 26 0.00056 27.5 7.8 40 119-158 7-46 (113)
54 PRK07718 fliL flagellar basal 73.0 10 0.00022 30.6 5.6 50 59-110 88-139 (142)
55 PRK01005 V-type ATP synthase s 72.5 63 0.0014 27.9 11.9 33 134-166 33-65 (207)
56 TIGR01147 V_ATP_synt_G vacuola 71.5 23 0.00049 27.8 7.0 55 130-184 7-63 (113)
57 KOG3090 Prohibitin-like protei 70.0 9.9 0.00021 33.6 5.1 18 145-162 211-228 (290)
58 PRK05697 flagellar basal body- 69.6 16 0.00035 29.4 6.0 54 58-111 78-135 (137)
59 KOG2621 Prohibitins and stomat 69.2 21 0.00045 32.4 7.1 22 162-183 217-238 (288)
60 PRK08404 V-type ATP synthase s 68.2 45 0.00098 25.4 8.0 33 119-151 4-36 (103)
61 PRK13665 hypothetical protein; 68.1 47 0.001 30.1 9.0 45 71-118 187-232 (316)
62 PRK06568 F0F1 ATP synthase sub 67.6 69 0.0015 26.4 9.5 12 195-206 129-140 (154)
63 PRK08455 fliL flagellar basal 66.7 18 0.00038 30.6 5.9 51 58-110 127-179 (182)
64 PF03179 V-ATPase_G: Vacuolar 62.3 19 0.0004 27.3 4.8 42 119-160 5-46 (105)
65 PHA02571 a-gt.4 hypothetical p 61.6 75 0.0016 24.7 9.9 72 133-208 25-96 (109)
66 PRK13428 F0F1 ATP synthase sub 58.7 1.8E+02 0.0038 28.1 13.3 31 175-209 128-158 (445)
67 PRK07021 fliL flagellar basal 58.5 36 0.00077 28.0 6.3 52 59-110 104-159 (162)
68 PRK12785 fliL flagellar basal 55.1 34 0.00073 28.4 5.6 51 59-111 112-164 (166)
69 PRK05696 fliL flagellar basal 54.9 43 0.00094 27.7 6.2 52 59-110 112-167 (170)
70 PRK06654 fliL flagellar basal 53.2 37 0.0008 28.8 5.5 50 59-111 128-177 (181)
71 PRK15322 invasion protein OrgB 52.7 1.6E+02 0.0034 25.6 11.9 37 178-221 83-119 (210)
72 PF12127 YdfA_immunity: SigmaW 51.2 1.7E+02 0.0036 26.8 9.5 55 61-118 171-227 (316)
73 PRK09098 type III secretion sy 49.4 1E+02 0.0022 27.0 7.9 23 137-159 48-70 (233)
74 PRK14474 F0F1 ATP synthase sub 49.1 1.9E+02 0.0041 25.6 12.3 27 136-162 83-109 (250)
75 PF03179 V-ATPase_G: Vacuolar 48.8 51 0.0011 24.8 5.3 40 133-172 8-47 (105)
76 PRK08475 F0F1 ATP synthase sub 48.1 1.4E+02 0.0031 24.5 8.3 18 72-89 46-64 (167)
77 PRK13453 F0F1 ATP synthase sub 46.6 1.7E+02 0.0036 24.2 9.1 17 72-88 42-59 (173)
78 PRK09173 F0F1 ATP synthase sub 46.2 1.6E+02 0.0034 23.8 8.2 15 73-87 27-42 (159)
79 PRK01005 V-type ATP synthase s 46.0 2E+02 0.0042 24.8 11.4 13 216-228 132-146 (207)
80 PRK08404 V-type ATP synthase s 45.8 99 0.0021 23.6 6.5 23 140-162 40-62 (103)
81 PRK07352 F0F1 ATP synthase sub 45.2 1.7E+02 0.0038 24.0 9.1 19 70-88 41-60 (174)
82 PRK13454 F0F1 ATP synthase sub 45.2 1.8E+02 0.0039 24.2 9.0 16 72-87 55-71 (181)
83 PRK06231 F0F1 ATP synthase sub 44.9 1.6E+02 0.0034 25.2 8.3 18 72-89 72-90 (205)
84 PRK14471 F0F1 ATP synthase sub 44.8 1.7E+02 0.0037 23.7 9.1 18 72-89 32-50 (164)
85 PF06188 HrpE: HrpE/YscL/FliH 44.3 72 0.0016 27.1 6.0 25 133-157 35-59 (191)
86 PRK09098 type III secretion sy 44.2 85 0.0018 27.5 6.6 33 130-162 50-82 (233)
87 PRK13460 F0F1 ATP synthase sub 43.8 1.8E+02 0.0039 23.9 8.3 19 71-89 39-58 (173)
88 PRK13461 F0F1 ATP synthase sub 42.9 1.8E+02 0.0039 23.5 9.1 17 72-88 29-46 (159)
89 PRK06568 F0F1 ATP synthase sub 42.0 2E+02 0.0042 23.7 8.3 13 137-149 68-80 (154)
90 PF06188 HrpE: HrpE/YscL/FliH 42.0 72 0.0016 27.0 5.7 17 219-235 135-151 (191)
91 PRK14473 F0F1 ATP synthase sub 40.8 2E+02 0.0042 23.4 9.1 18 72-89 32-50 (164)
92 PRK14472 F0F1 ATP synthase sub 40.2 2.1E+02 0.0045 23.5 8.3 17 72-88 42-59 (175)
93 PRK01194 V-type ATP synthase s 39.4 1.1E+02 0.0023 25.8 6.3 31 124-154 10-40 (185)
94 CHL00118 atpG ATP synthase CF0 39.4 2E+02 0.0044 23.2 8.3 9 73-81 47-55 (156)
95 PRK13428 F0F1 ATP synthase sub 39.0 2.2E+02 0.0047 27.4 9.1 18 72-89 25-43 (445)
96 PRK09174 F0F1 ATP synthase sub 39.0 2.5E+02 0.0054 24.0 8.9 17 72-88 77-94 (204)
97 TIGR03321 alt_F1F0_F0_B altern 37.2 2.8E+02 0.0061 24.2 14.3 30 136-165 83-112 (246)
98 PRK13455 F0F1 ATP synthase sub 36.6 2.5E+02 0.0054 23.3 9.1 18 72-89 51-69 (184)
99 PRK06669 fliH flagellar assemb 35.3 2.4E+02 0.0052 25.1 8.3 22 133-154 93-114 (281)
100 PRK15322 invasion protein OrgB 32.3 1.7E+02 0.0037 25.4 6.4 15 143-157 27-41 (210)
101 PF11978 MVP_shoulder: Shoulde 30.8 64 0.0014 25.5 3.3 70 43-113 40-117 (118)
102 PRK08476 F0F1 ATP synthase sub 30.6 2.8E+02 0.006 22.1 9.5 17 72-88 31-48 (141)
103 TIGR01144 ATP_synt_b ATP synth 29.9 2.8E+02 0.006 21.8 8.3 8 73-80 20-27 (147)
104 PRK04057 30S ribosomal protein 29.7 2.3E+02 0.0049 24.5 6.8 60 48-112 122-183 (203)
105 COG2811 NtpF Archaeal/vacuolar 29.0 1.6E+02 0.0035 22.9 5.2 22 150-171 67-88 (108)
106 KOG0742 AAA+-type ATPase [Post 28.9 4E+02 0.0087 26.2 8.8 11 199-209 254-264 (630)
107 CHL00019 atpF ATP synthase CF0 28.7 3.4E+02 0.0073 22.5 12.1 19 71-89 47-66 (184)
108 TIGR03321 alt_F1F0_F0_B altern 28.7 4E+02 0.0086 23.2 9.5 18 72-89 29-47 (246)
109 PF12127 YdfA_immunity: SigmaW 27.6 1.9E+02 0.0041 26.4 6.1 99 91-196 194-296 (316)
110 CHL00118 atpG ATP synthase CF0 26.3 3.5E+02 0.0075 21.8 9.5 8 147-154 85-92 (156)
111 PF01015 Ribosomal_S3Ae: Ribos 26.0 2.4E+02 0.0053 24.0 6.4 59 48-111 128-188 (194)
112 TIGR02499 HrpE_YscL_not type I 26.0 2.9E+02 0.0063 22.0 6.7 7 223-229 122-128 (166)
113 PRK14475 F0F1 ATP synthase sub 25.8 3.7E+02 0.008 21.9 9.5 18 72-89 34-52 (167)
114 COG1390 NtpE Archaeal/vacuolar 24.3 4.5E+02 0.0097 22.4 10.9 7 215-221 121-127 (194)
115 TIGR02926 AhaH ATP synthase ar 23.0 3E+02 0.0064 19.9 7.5 11 136-146 17-27 (85)
116 KOG1772 Vacuolar H+-ATPase V1 22.2 3.7E+02 0.0079 20.9 6.0 38 120-157 8-45 (108)
117 PRK12613 galactose-6-phosphate 20.8 94 0.002 25.3 2.7 31 84-114 11-41 (141)
118 COG1654 BirA Biotin operon rep 20.4 1.6E+02 0.0034 21.5 3.5 29 73-106 25-54 (79)
119 PRK05759 F0F1 ATP synthase sub 20.4 4.4E+02 0.0095 20.9 8.8 63 114-176 59-122 (156)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=4.3e-39 Score=285.81 Aligned_cols=221 Identities=53% Similarity=0.752 Sum_probs=200.0
Q ss_pred hhhhhhhccCCc---cccccccc---cc---------------ceEEEEeecc--cceeeccchHHHHHhhHHHHHHHhh
Q 026063 11 MCLLMWLLPFNT---EPWQRRLQ---MP---------------FISSAILDRR--SKRMSLMSLQEILTTSCLGLVIRAS 67 (244)
Q Consensus 11 ~~~l~~~~p~~~---~~~~~~l~---~~---------------~~~~~i~d~~--~~~~~v~~~~~~i~~~~v~~~lR~v 67 (244)
-.||+|++||.. +.++.|++ ++ .+.|+|.|+. +++|++.|+...|. +.+++++|++
T Consensus 18 ~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~-~~~~s~lR~v 96 (262)
T cd03407 18 WPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGNPEEQIQ-SYVFDVLRAR 96 (262)
T ss_pred CCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCCHHHHHH-HHHHHHHHHH
Confidence 469999999972 33455443 22 4467888877 89999999888777 8999999999
Q ss_pred cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR 147 (244)
Q Consensus 68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~ 147 (244)
+|++++++++++|+.|+..|.+.+++.+++|||.|.+|.|++|+||+++++||++++.|+|++++.+.+||+++.+.+.+
T Consensus 97 ig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~~i~~ 176 (262)
T cd03407 97 IPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIKDIKA 176 (262)
T ss_pred hcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchh
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVK 227 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~~~ 227 (244)
|+|++++.+++|+|+|++.++.|+|+++++..+.+++...++++++++++..+|+++|++++++++ +++|+|.+++++.
T Consensus 177 A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~-kviv~p~~~~~~~ 255 (262)
T cd03407 177 AEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSS-TVVFRPHGPGGAQ 255 (262)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCC-CEEEecCCCccHH
Confidence 999999999999999999999999999999999998866567899999999999999999996555 8899999999988
Q ss_pred HHHHHH
Q 026063 228 DIASQI 233 (244)
Q Consensus 228 ~~~~~~ 233 (244)
+++..|
T Consensus 256 ~~~~~~ 261 (262)
T cd03407 256 DIYAQI 261 (262)
T ss_pred HHHHhc
Confidence 887665
No 2
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=8.3e-39 Score=277.25 Aligned_cols=229 Identities=36% Similarity=0.545 Sum_probs=203.4
Q ss_pred hhhhhhccCCccc----cccccccc------------------ceEEEEeeccc--ceeeccchHHHHHhhHHHHHHHhh
Q 026063 12 CLLMWLLPFNTEP----WQRRLQMP------------------FISSAILDRRS--KRMSLMSLQEILTTSCLGLVIRAS 67 (244)
Q Consensus 12 ~~l~~~~p~~~~~----~~~~l~~~------------------~~~~~i~d~~~--~~~~v~~~~~~i~~~~v~~~lR~v 67 (244)
-||.||.||+.+. -.++++++ .++++|+||.+ ++|.|+|+..+|. .++++++|+.
T Consensus 32 PG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp~~aI~-qlaqttmRse 110 (301)
T KOG2620|consen 32 PGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENPEYAIQ-QLAQTTMRSE 110 (301)
T ss_pred CcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCHHHHHH-HHHHHHHHHh
Confidence 3899999997221 12233322 34569999999 9999999999999 6999999999
Q ss_pred cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR 147 (244)
Q Consensus 68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~ 147 (244)
+|++|||.+|.+|+.|+..|.+.+++.++.||+.|.+.+|+||.||+.+.+||+.+.+|||.++|.+.++||+|+++|.+
T Consensus 111 vgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~Inr 190 (301)
T KOG2620|consen 111 VGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINR 190 (301)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCC-----------CCchhHHHHHHHHHHHHHHHHHhcCCCCcE
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPG-----------TSSKDVMDMVLVTQYFDTMKEIGASSKTNS 216 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~-----------~~~~~~~~~~l~~ryleal~~i~~~~~~~~ 216 (244)
|||++++.++.++|.+..+...++|+++++-.++++..+ .+.-++++|+...+|+.++.+++ +.+|+
T Consensus 191 AEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~la--k~snt 268 (301)
T KOG2620|consen 191 AEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLA--KKSNT 268 (301)
T ss_pred hcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhc--ccCce
Confidence 999999999999999999999999999998888776543 23456678889999999999998 45678
Q ss_pred EEecCCCCchhHHHHHHHHHHHhhhhc
Q 026063 217 VFIPHGPGAVKDIASQIREGLLQANAT 243 (244)
Q Consensus 217 ivlp~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
+|||.+||++.++..+++.++.++..+
T Consensus 269 v~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 269 VFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred EEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999998887654
No 3
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=8.2e-33 Score=252.90 Aligned_cols=214 Identities=15% Similarity=0.203 Sum_probs=179.9
Q ss_pred hhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeecc--chHH--HHHhhHHHHHHH
Q 026063 11 MCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLM--SLQE--ILTTSCLGLVIR 65 (244)
Q Consensus 11 ~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~--~~~~--~i~~~~v~~~lR 65 (244)
--||+|.+||. ...++.|++ .+ ++.|+|.||.+++|.+. |+.. ....+.+++++|
T Consensus 49 ~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR 128 (334)
T PRK11029 49 APGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLR 128 (334)
T ss_pred CCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEEEEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 46999999997 245555543 21 34678888887766532 3322 233467899999
Q ss_pred hhcCCCCHHHHHh-hHHHHHHHHHHHHHHH---------------------------------------HhhcCcEEEEE
Q 026063 66 ASVPKLDLDATFE-QKNDIAKAVEEELEKA---------------------------------------MSHYGYEIVQT 105 (244)
Q Consensus 66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~---------------------------------------~~~~GI~V~~V 105 (244)
+++|+++++++++ +|++|+.++++.+++. +.+|||+|.+|
T Consensus 129 ~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V 208 (334)
T PRK11029 129 SEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDV 208 (334)
T ss_pred HHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccccccccccccccccccCCcEEEEE
Confidence 9999999999998 7999999999999864 47899999999
Q ss_pred EeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCC
Q 026063 106 LIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVP 185 (244)
Q Consensus 106 ~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~ 185 (244)
+|++++||+++.++|+.+|.|||+++|...+|||++.+..++++|+.++.++.|+|++++..++|+|++++++.++++|.
T Consensus 209 ~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~ 288 (334)
T PRK11029 209 RIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS 288 (334)
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHHHH
Q 026063 186 GTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQIR 234 (244)
Q Consensus 186 ~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~~~~ 234 (244)
. +| +++.+++||++|+++++ ++++++|||. + .+++..++
T Consensus 289 ~--~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~--~--~~~~~~l~ 327 (334)
T PRK11029 289 Q--DP---DFYAFIRSLRAYENSFS-GNQDVMVLSP--D--SDFFRYMK 327 (334)
T ss_pred c--CH---HHHHHHHHHHHHHHHhc-CCCcEEEECC--C--hHHHHHhh
Confidence 3 33 67778999999999983 4457888984 3 36777775
No 4
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=6.7e-32 Score=239.04 Aligned_cols=204 Identities=18% Similarity=0.215 Sum_probs=178.9
Q ss_pred hhhhhhhccCC--cccccccc-c-c----c-------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcC
Q 026063 11 MCLLMWLLPFN--TEPWQRRL-Q-M----P-------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVP 69 (244)
Q Consensus 11 ~~~l~~~~p~~--~~~~~~~l-~-~----~-------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig 69 (244)
-.||+|++||. .+.++.+. + . + .+.|+|.|+.+++|++.|+...+. +.+++++|+++|
T Consensus 23 ~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~~~l~-~~~~s~lR~vig 101 (261)
T TIGR01933 23 DPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPEDSLR-QATDSALRGVIG 101 (261)
T ss_pred CCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHHhCCCHHHHHH-HHHHHHHHHHHh
Confidence 46999999996 23344331 1 1 1 346799999999999999888877 899999999999
Q ss_pred CCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 70 KLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIK 146 (244)
Q Consensus 70 ~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~ 146 (244)
+++++++++ +|++|+..|.+.+++.++.| ||.|.+|.|++++||+++.++|++++.|++++++.+.+||++++..+.
T Consensus 102 ~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~ 181 (261)
T TIGR01933 102 DSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYINEAEAYANEVVP 181 (261)
T ss_pred hCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 89999999999999999976 999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecC
Q 026063 147 RAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH 221 (244)
Q Consensus 147 ~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~ 221 (244)
+|+|++++.++.|+|++++..++|+|+++++..++++|.. +| +++.+++||++|++++ ++++++++++.
T Consensus 182 ~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~--~p---~~~~~~~~le~~~~~~-~~~~~~~~~~~ 250 (261)
T TIGR01933 182 KARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKK--AP---DVTRERLYLETMEKVL-SNTRKVLLDDK 250 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--Ch---HHHHHHHHHHHHHHHH-ccCCeEEEECC
Confidence 9999999999999999999999999999999999999863 45 5556788999999998 44556677763
No 5
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.7e-31 Score=243.31 Aligned_cols=211 Identities=13% Similarity=0.184 Sum_probs=177.0
Q ss_pred hhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeecc--chH--HHHHhhHHHHHHHh
Q 026063 12 CLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLM--SLQ--EILTTSCLGLVIRA 66 (244)
Q Consensus 12 ~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~--~~~--~~i~~~~v~~~lR~ 66 (244)
-||+|.+||. .+.++.|++ .+ .+.|+|.|+.++++++. ++. +....+.+++++|+
T Consensus 50 pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~ 129 (317)
T TIGR01932 50 PGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRS 129 (317)
T ss_pred CCeEEEeccccEEEEeeeeEEEecCCcceeECCCCCEEEEEEEEEEEECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999996 355666643 11 34568888888887765 332 23344789999999
Q ss_pred hcCCCCHHHHHh-hHHHH-----------------------------HHHHHHHHHHHHhhcCcEEEEEEeeeccchHHH
Q 026063 67 SVPKLDLDATFE-QKNDI-----------------------------AKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHV 116 (244)
Q Consensus 67 vig~~tldeil~-~R~~i-----------------------------~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i 116 (244)
++|+++++++++ +|++| ...|.+.+.+.+.+|||.|.+|.|++++||+++
T Consensus 130 vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v 209 (317)
T TIGR01932 130 EIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDEL 209 (317)
T ss_pred HHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHH
Confidence 999999999998 46666 557888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHH
Q 026063 117 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMV 196 (244)
Q Consensus 117 ~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~ 196 (244)
+++|++++.|+|++.|...+++|++.+..+.|+|++++.++.|+|+|++..++|+|++++++.++++|.. +| +++
T Consensus 210 ~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~--~p---~~~ 284 (317)
T TIGR01932 210 SESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGK--DP---EFY 284 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcc--CH---HHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999974 44 555
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEecCCCCchhHHHHH
Q 026063 197 LVTQYFDTMKEIGASSKTNSVFIPHGPGAVKDIASQ 232 (244)
Q Consensus 197 l~~ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~~ 232 (244)
.+++||++|++++ +++++++|||.+ +++|..
T Consensus 285 ~~~~~le~~~~~~-~~~~~~~vl~~~----~~~~~~ 315 (317)
T TIGR01932 285 SFWRSLEAYEKSF-KDNQDEKVLSTD----SEFFQY 315 (317)
T ss_pred HHHHHHHHHHHHh-CCCCCEEEECCC----cHHHHh
Confidence 5788999999998 456678899853 466654
No 6
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=99.98 E-value=3.5e-31 Score=248.37 Aligned_cols=202 Identities=19% Similarity=0.216 Sum_probs=174.9
Q ss_pred hhhhhhccCCc--cccccccc--c-----------------cceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCC
Q 026063 12 CLLMWLLPFNT--EPWQRRLQ--M-----------------PFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPK 70 (244)
Q Consensus 12 ~~l~~~~p~~~--~~~~~~l~--~-----------------~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~ 70 (244)
.||+|.+||+. ..++.+.. + -+++|+|.||.+++|+|.|++..|. +.++++||+++|+
T Consensus 120 PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~~~L~-~~~~SAlR~vIG~ 198 (419)
T PRK10930 120 PGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLR-QATDSALRGVIGK 198 (419)
T ss_pred CceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHHHHHH-HHHHHHHHHHHcc
Confidence 49999999972 33333221 1 0446899999999999999988887 7999999999999
Q ss_pred CCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 71 LDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR 147 (244)
Q Consensus 71 ~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~ 147 (244)
++++++++ +|++|+..|++.+++.++.| ||+|.+|+|++++||+++++||++.+.|++++++.+.+||++++..+.+
T Consensus 199 ~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~ 278 (419)
T PRK10930 199 YTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPR 278 (419)
T ss_pred CCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 69999999999999999997 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecC
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH 221 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~ 221 (244)
|+|++++.+.+|+|++++.+++|+|+++++..+..+|.. +|+.+. ...|||||+++++ +.+.||+..
T Consensus 279 A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~k--aP~vtr---~RlYletme~vl~--~~~kvivd~ 345 (419)
T PRK10930 279 ANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKA--APEITR---ERLYIETMEKVLG--HTRKVLVND 345 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--CHHHHH---HHHHHHHHHHHHc--cCCEEEEeC
Confidence 999999999999999999999999999887777778863 676665 4559999999983 334455543
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.97 E-value=1.7e-30 Score=227.15 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=167.9
Q ss_pred hhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeeccchHH---HHHhhHHHHHHHh
Q 026063 11 MCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQE---ILTTSCLGLVIRA 66 (244)
Q Consensus 11 ~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~---~i~~~~v~~~lR~ 66 (244)
--||+|.+||. .+.++.|++ ++ .+.|+|.|+.++++++.+..+ .++.+.+++++|+
T Consensus 24 ~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~~~i~~~~~~~lr~ 103 (242)
T cd03405 24 EPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRA 103 (242)
T ss_pred CCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 36899999997 244555543 11 335678788777777766542 3344789999999
Q ss_pred hcCCCCHHHHHhh-HHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 67 SVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQI 145 (244)
Q Consensus 67 vig~~tldeil~~-R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i 145 (244)
++|++++++++++ |++|+..|.+.+++.+++|||.|.+|.|++|+||+++.++|++++.|+|++.++..+|+|++++.+
T Consensus 104 vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~ 183 (242)
T cd03405 104 EFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAER 183 (242)
T ss_pred HHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999997 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 026063 146 KRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEI 208 (244)
Q Consensus 146 ~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i 208 (244)
+.|++++++.++.|+|+|++.+++|+|+++++++++++|.. +|+ ++.++++|++|+.+
T Consensus 184 ~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~--~p~---~~~~~~~l~~~~~~ 241 (242)
T cd03405 184 IRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGK--DPE---FYAFYRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CHH---HHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999974 554 45578899999865
No 8
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-30 Score=230.58 Aligned_cols=188 Identities=23% Similarity=0.360 Sum_probs=168.7
Q ss_pred ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHH-HHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 33 FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKN-DIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 33 ~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~-~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
.+.|+|.|+.+++|.+.+++..+. ..++++||+++|++++++++++|+ .|+..+.+.+++.+++|||.|.+|+|++++
T Consensus 92 ~v~~rv~d~~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~ 170 (291)
T COG0330 92 VVQYRVTDPQKAVYNVENAEAALR-QLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDID 170 (291)
T ss_pred EEEEEEcCHHHHHHhcCCHHHHHH-HHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecC
Confidence 346688899999999999888888 799999999999999999999887 999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchh
Q 026063 112 PDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKD 191 (244)
Q Consensus 112 ~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~ 191 (244)
||+++..+|+++|.|||++++.+.+|||++++.+++|+|++++.++.+||++++ +..++|++++++.+++++.. .+
T Consensus 171 ~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~--~~- 246 (291)
T COG0330 171 PPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE--AP- 246 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc--cc-
Confidence 999999999999999999999999999999999999999999999999999998 66666666788999998864 23
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 026063 192 VMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGA 225 (244)
Q Consensus 192 ~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~ 225 (244)
...++.+++|++++.+++.+++++++++|.+.++
T Consensus 247 ~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 247 AAPQALAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred chhHHHHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 3467778999999999986667788888876554
No 9
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=99.96 E-value=6.5e-29 Score=220.39 Aligned_cols=170 Identities=24% Similarity=0.278 Sum_probs=157.7
Q ss_pred eEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh-HHHHHHHHHHHHHHHHhhc--CcEEEEEEeeec
Q 026063 34 ISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQ-KNDIAKAVEEELEKAMSHY--GYEIVQTLIVDI 110 (244)
Q Consensus 34 ~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~-R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i 110 (244)
+.|+|.|+.+++|.+.|+...+. +.+++++|+++|++++++++++ |++|+..|++.+++.++.| ||.|.+|.|+++
T Consensus 94 v~yrI~d~~~~~~~~~~~~~~l~-~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i 172 (266)
T cd03404 94 VQYRISDPYDYLFNVRDPEGTLR-QAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDA 172 (266)
T ss_pred EEEEECCHHHHHhhCCCHHHHHH-HHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeC
Confidence 36799999999999999888777 8999999999999999999996 9999999999999999977 999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCch
Q 026063 111 EPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSK 190 (244)
Q Consensus 111 ~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~ 190 (244)
+||+++.++|++++.|++++++.+.+|++++++.+.+|+|++++.++.|+|++++.++.|+|+++++.+++++|.. +|
T Consensus 173 ~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~--~~ 250 (266)
T cd03404 173 DPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK--AP 250 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--Ch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974 55
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 026063 191 DVMDMVLVTQYFDTMKEIG 209 (244)
Q Consensus 191 ~~~~~~l~~ryleal~~i~ 209 (244)
+.+ .++.|+++|++++
T Consensus 251 ~~~---~~~~~~~~~~~~~ 266 (266)
T cd03404 251 DVT---RERLYLETMEEVL 266 (266)
T ss_pred HHH---HHHHHHHHHHHhC
Confidence 554 4566999999863
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=99.94 E-value=2.2e-25 Score=191.44 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=141.1
Q ss_pred hhhhhhhccCC--c-cccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhc
Q 026063 11 MCLLMWLLPFN--T-EPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASV 68 (244)
Q Consensus 11 ~~~l~~~~p~~--~-~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vi 68 (244)
--||+|++||. . +.++.|++ ++ .+.|+|.||.+++|.+.|+...+. +.+++++|+++
T Consensus 20 ~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~-~~~~~~lr~~i 98 (215)
T cd03403 20 GPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGVEDYRYAIS-QLAQTTLRSVI 98 (215)
T ss_pred CCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcCCCHHHHHH-HHHHHHHHHHH
Confidence 46999999997 3 55666654 21 346788899999999999988777 79999999999
Q ss_pred CCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026063 69 PKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRA 148 (244)
Q Consensus 69 g~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~A 148 (244)
|++++++++++|+.|+..|++.+++.+.+|||.|.+|.|+++++|+++.++|+.++.|+++++|.+.+|+|++++.++.|
T Consensus 99 ~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a~i~~A~ge~~a~~~~a 178 (215)
T cd03403 99 GKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA 178 (215)
T ss_pred ccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988887777777776666665
Q ss_pred hhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEec
Q 026063 149 EGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIP 220 (244)
Q Consensus 149 eaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp 220 (244)
+|++++.. ++.+ +.++++++++.++++++.++++.|
T Consensus 179 ea~~~~~~--------------------------------~~~~----~~~~~~e~~~~~~~~~~~~~~~~~ 214 (215)
T cd03403 179 EAAKQAAI--------------------------------NPAA----LQLRELETLEEIAKEAASTVVFPA 214 (215)
T ss_pred HHHHHHcc--------------------------------CHHH----HHHHHHHHHHHHHhccCCeEEeeC
Confidence 55543311 2223 368899999999976665444433
No 11
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.93 E-value=2.5e-26 Score=201.37 Aligned_cols=178 Identities=21% Similarity=0.248 Sum_probs=142.3
Q ss_pred chhhhhhhhccCC--ccccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhh
Q 026063 9 RTMCLLMWLLPFN--TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRAS 67 (244)
Q Consensus 9 ~~~~~l~~~~p~~--~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~v 67 (244)
..-=|++|++||+ +++++.|++ +| .+.++|.||.-+..+|.|...+.. -+.+++||++
T Consensus 77 ~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr-~lAqttLrn~ 155 (288)
T KOG2621|consen 77 ARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATR-LLAQTTLRNY 155 (288)
T ss_pred CCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHH-HHHHHHHHHH
Confidence 4456999999998 686666655 33 223366677777777777666666 6899999999
Q ss_pred cCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 68 VPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKR 147 (244)
Q Consensus 68 ig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~ 147 (244)
+|+.++.|++++|+.|..+++..+++.+..|||+|++|+|+||.+|.+.+++|....+|.|+.+|++..||||+.+
T Consensus 156 lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~a---- 231 (288)
T KOG2621|consen 156 LGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKA---- 231 (288)
T ss_pred HccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999988888887777653
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPHGPGA 225 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~~~~~ 225 (244)
.++++++...+++ +|.++ ++|||++|.+++ +.+++|+++|. |.+
T Consensus 232 ----------------------s~al~~aa~v~~~------sp~al----qLryLqtl~sia-~e~~~tivfP~-p~e 275 (288)
T KOG2621|consen 232 ----------------------SEALKEAADVISE------SPIAL----QLRYLQTLNSIA-AEKNSTIVFPL-PID 275 (288)
T ss_pred ----------------------HHHHHHhhccccC------Cchhh----hhhhhhcchhhh-cCCCCCcccCC-CHH
Confidence 2344444333332 45554 689999999998 67788999997 443
No 12
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-23 Score=179.02 Aligned_cols=185 Identities=22% Similarity=0.331 Sum_probs=145.2
Q ss_pred CCCcCCCcchhhhhhhhccCCcccccccccccceEEEEeecccc-----eee--ccchHHHHHhhHHHHHHHhhcCCCCH
Q 026063 1 MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRRSK-----RMS--LMSLQEILTTSCLGLVIRASVPKLDL 73 (244)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~d~~~~-----~~~--v~~~~~~i~~~~v~~~lR~vig~~tl 73 (244)
+||||++||.+.|++ +++ +|||..|.+++++++.. .|+ =+|+.+.+..++++++|++++++++.
T Consensus 77 iYDvRarP~~i~S~t-----Gsk----DLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNA 147 (290)
T KOG3090|consen 77 IYDVRARPRLISSPT-----GSK----DLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNA 147 (290)
T ss_pred eeeeccCcccccCCC-----CCc----ceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhH
Confidence 699999999999999 977 99999999999997731 111 12344444448999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 026063 74 DATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLA---ANEKAEAEKILQIKRAEG 150 (244)
Q Consensus 74 deil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A---~~~~Aegek~a~i~~Aea 150 (244)
++++++|+.+...|++.+.+...+|.|.++||.|+.+.+++++..|++.+..|.++.+. -+.+|+.+++..+++|+|
T Consensus 148 SqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqG 227 (290)
T KOG3090|consen 148 SQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQG 227 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999998888777654 245677777766666666
Q ss_pred HHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEecCC
Q 026063 151 EAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--SSKTNSVFIPHG 222 (244)
Q Consensus 151 eaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--~~~~~~ivlp~~ 222 (244)
|++++.+. .+|++ ++|..+ .+|.+++-++|+. +.+.|.++|+++
T Consensus 228 EaksAqli----------------------GeAi~--nn~~fi----~Lrki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090|consen 228 EAKSAQLI----------------------GEAIK--NNPAFI----TLRKIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred chHHHHHH----------------------HHHHh--CCccce----eehhHHHHHHHHHHHhcCCCeEEeccc
Confidence 65554433 33332 244433 5788999888874 355677888853
No 13
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.84 E-value=4.8e-20 Score=165.20 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=117.9
Q ss_pred hhhhhhccCCc--cccccccc---c---cc-------eE---E---EEeeccc---ce--eeccchHHHHHhhHHHHHHH
Q 026063 12 CLLMWLLPFNT--EPWQRRLQ---M---PF-------IS---S---AILDRRS---KR--MSLMSLQEILTTSCLGLVIR 65 (244)
Q Consensus 12 ~~l~~~~p~~~--~~~~~~l~---~---~~-------~~---~---~i~d~~~---~~--~~v~~~~~~i~~~~v~~~lR 65 (244)
-||+|.+||+. ..++.+++ + ++ ++ | .++||.+ .+ |.+.+. ..++.+.+.+.+|
T Consensus 29 PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y~~~~~-~~~I~~~Vrsavr 107 (280)
T cd03406 29 PGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYD-KTLIFNKIHHELN 107 (280)
T ss_pred CceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHHhHhhH-HHHHHHHHHHHHH
Confidence 48999999972 24555542 1 21 11 1 2334443 11 455443 4445588999999
Q ss_pred hhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHHH--------HHH
Q 026063 66 ASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLRL--------AAN 134 (244)
Q Consensus 66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~--------A~~ 134 (244)
.++|+++++++++ +|+.|...+++.+++.++.| ||.|.+|.|++++||+++.++| ++|.|||++. +.+
T Consensus 108 ~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM~aER~k~~~~~~~~~~~~ 186 (280)
T cd03406 108 QFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELMEAEKTKLLIAIQKQKVVE 186 (280)
T ss_pred HHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHHHHHHHhhhhccchhHHHH
Confidence 9999999999999 89999999999999999988 9999999999999999999997 7999999999 999
Q ss_pred HHHHHHHHHHHHHhhhHHHhhHhhc
Q 026063 135 EKAEAEKILQIKRAEGEAESKYLAG 159 (244)
Q Consensus 135 ~~Aegek~a~i~~Aeaeaea~~~~A 159 (244)
.+|||+|.+.+++|+|+++-..+.-
T Consensus 187 ~~ae~~~~~~~~~a~~~~~~~~~~~ 211 (280)
T cd03406 187 KEAETERKKAVIEAEKVAQVAKILF 211 (280)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999998876543
No 14
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.84 E-value=8.3e-21 Score=164.83 Aligned_cols=128 Identities=16% Similarity=0.271 Sum_probs=112.8
Q ss_pred hhhhhhccCC-ccccccccc---cc----------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCC
Q 026063 12 CLLMWLLPFN-TEPWQRRLQ---MP----------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKL 71 (244)
Q Consensus 12 ~~l~~~~p~~-~~~~~~~l~---~~----------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~ 71 (244)
-||+|.+||. .+.++.|++ .+ ++.|+|.||.+++|++.|+...+. ..+++++|+++|++
T Consensus 26 pGL~~~~P~~~~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~~~~l~-~~~~salR~vig~~ 104 (219)
T cd03402 26 TGLRWVNPFSSKKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDYEEFVH-IQSESALRHVASQY 104 (219)
T ss_pred CceEEEeccceEEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCHHHHHH-HHHHHHHHHHHccC
Confidence 5999999997 344555543 11 457899999999999999988777 79999999999999
Q ss_pred CHHHHHh-------hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 72 DLDATFE-------QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAE 140 (244)
Q Consensus 72 tldeil~-------~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aege 140 (244)
+++++++ +|++|+.++++.+++.++.|||.|.+|+|++++||+++.+||+++|+|+++..|+...++|.
T Consensus 105 ~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~Ae~~~~Ar~~~~~Ga 180 (219)
T cd03402 105 PYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIAARRKIVEGA 180 (219)
T ss_pred cHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999986 57999999999999999999999999999999999999999999999999988887777763
No 15
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=99.84 E-value=4.3e-20 Score=156.49 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=74.1
Q ss_pred HHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHH
Q 026063 52 QEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRL 131 (244)
Q Consensus 52 ~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~ 131 (244)
.+.++.+.+++++|+++|+++++|++++|++|+..|.+.+.+.+++|||.|.+|.|++|+||+++.++|++++.|+++.+
T Consensus 90 ~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~ 169 (196)
T cd03401 90 DERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAE 169 (196)
T ss_pred HhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 34444578999999999999999999999999999999999999999999999999999999999999999888887754
Q ss_pred H
Q 026063 132 A 132 (244)
Q Consensus 132 A 132 (244)
.
T Consensus 170 ~ 170 (196)
T cd03401 170 R 170 (196)
T ss_pred H
Confidence 3
No 16
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=154.68 Aligned_cols=182 Identities=21% Similarity=0.356 Sum_probs=139.5
Q ss_pred CCCcCCCcchhhhhhhhccCCcccccccccccceEEEEeecc------------cceeeccchHHHHHhhHHHHHHHhhc
Q 026063 1 MFDVKQKPRTMCLLMWLLPFNTEPWQRRLQMPFISSAILDRR------------SKRMSLMSLQEILTTSCLGLVIRASV 68 (244)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~d~~------------~~~~~v~~~~~~i~~~~v~~~lR~vi 68 (244)
+||+|.+|+++.+.+ +++ +||+..++.+|+..+ +-.|+ +.++. ++..+.|++++
T Consensus 66 i~d~rs~p~~v~~it-----Gsk----dLQ~VniTlril~rp~~sqLP~If~~~G~dyD----ErVLp-sI~~eiLKsVV 131 (271)
T KOG3083|consen 66 IFDCRSRPRNVPVIT-----GSK----DLQNVNITLRILFRPVVSQLPCIFTSIGEDYD----ERVLP-SITTEILKSVV 131 (271)
T ss_pred EEeccCCCccccccc-----Cch----hhhcccceEEEEecccccccchHHHhhccccc----ccccc-cchHHHHHHHH
Confidence 699999999998888 766 899999988887744 23344 45555 78999999999
Q ss_pred CCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 026063 69 PKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLRLAA---NEKAEAEKILQI 145 (244)
Q Consensus 69 g~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~---~~~Aegek~a~i 145 (244)
++++..|++++|+.+.+.+...+.+....||+.+++|.|+++.+..++.+|++.+..|+|+.+.. +.+||.+|.+.+
T Consensus 132 a~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aav 211 (271)
T KOG3083|consen 132 ARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAV 211 (271)
T ss_pred HhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999998876542 345666666555
Q ss_pred HHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEecCCC
Q 026063 146 KRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--SSKTNSVFIPHGP 223 (244)
Q Consensus 146 ~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--~~~~~~ivlp~~~ 223 (244)
++||||+++ .+..+.+.+.+ + +-++.++.+|+-++++. +.+.|+.+||.+.
T Consensus 212 IsAEGds~a-----------A~li~~sla~a------------G----~gLielrrlEAa~dia~~Ls~s~nv~YLp~g~ 264 (271)
T KOG3083|consen 212 ISAEGDSKA-----------AELIANSLATA------------G----DGLIELRRLEAAEDIAYQLSRSRNVTYLPAGQ 264 (271)
T ss_pred eecccchHH-----------HHHHHHHHhhc------------C----CceeeehhhhhHHHHHHHHhcCCCceeccCCc
Confidence 555555444 44444444432 1 11224667787777763 4667888999643
No 17
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.58 E-value=3.4e-14 Score=117.31 Aligned_cols=130 Identities=26% Similarity=0.396 Sum_probs=90.2
Q ss_pred hhhhhhhhccCC--ccccccccc---cc------------------ceEEEEeecccceeec----cchHHHHHhhHHHH
Q 026063 10 TMCLLMWLLPFN--TEPWQRRLQ---MP------------------FISSAILDRRSKRMSL----MSLQEILTTSCLGL 62 (244)
Q Consensus 10 ~~~~l~~~~p~~--~~~~~~~l~---~~------------------~~~~~i~d~~~~~~~v----~~~~~~i~~~~v~~ 62 (244)
.--|++|++||. .+.++.+.+ +. .++|+|-|+...+.+. .+++..+. +.+.+
T Consensus 21 ~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~~~~~~~~~~~~~~l~-~~~~~ 99 (179)
T PF01145_consen 21 LGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFVQNYEGGEEDPENLLR-QIVES 99 (179)
T ss_dssp -----------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCCCCCSS-HCHHHHHHH-HHHHH
T ss_pred ECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHHHhhhcchhhhhhhhh-hhhhh
Confidence 345899999976 233333322 22 2244665666666555 56666666 79999
Q ss_pred HHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 026063 63 VIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARLR-LAANEKAEAE 140 (244)
Q Consensus 63 ~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~-~A~~~~Aege 140 (244)
++|++++++++++++++|.++...+.+.+++.+.+|||+|.+|.|.++.+|+++.++|..+..+++++ ++...+|++|
T Consensus 100 ~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 100 ALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988877 5555444443
No 18
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.57 E-value=1.3e-14 Score=117.84 Aligned_cols=113 Identities=21% Similarity=0.316 Sum_probs=96.1
Q ss_pred hhhhhhhccCC--ccccccccccc-------------------ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcC
Q 026063 11 MCLLMWLLPFN--TEPWQRRLQMP-------------------FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVP 69 (244)
Q Consensus 11 ~~~l~~~~p~~--~~~~~~~l~~~-------------------~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig 69 (244)
--|++|++||. .+.++.+.+.. .+.|+|.|+.++.|++.++......+.+++++|+++|
T Consensus 25 ~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~~~~~~~~~~~l~~~i~~~ir~~i~ 104 (160)
T smart00244 25 GPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDADYAVIEQLAQTTLRSVIG 104 (160)
T ss_pred CCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence 45999999995 35555554411 3356888998888888887743444899999999999
Q ss_pred CCCHHHHHh-hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHH
Q 026063 70 KLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123 (244)
Q Consensus 70 ~~tldeil~-~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~ 123 (244)
+++++++++ +|+++++.+.+.+.+.+++||+.|.+|.|+++++|+++.++|+++
T Consensus 105 ~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 105 KMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999 799999999999999999999999999999999999999999764
No 19
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.36 E-value=1e-12 Score=104.49 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=75.2
Q ss_pred ceEEEEeecccceee---------ccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063 33 FISSAILDRRSKRMS---------LMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIV 103 (244)
Q Consensus 33 ~~~~~i~d~~~~~~~---------v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~ 103 (244)
++.|+|.|+.+++.. +.+....+. +.+++++|+++|++++++++++|++|+..|.+.+...+++|||+|.
T Consensus 29 ~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~lR~~ig~~tl~el~~~R~~i~~~i~~~v~~~~~~~Gi~i~ 107 (128)
T cd03399 29 VFQVKVGGTEEAIATAAERFLGKSEEEIEELVK-EVLEGHLRAVVGTMTVEEIYEDRDKFAEQVQEVVAPDLNKMGLELD 107 (128)
T ss_pred EEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 457899998854322 233444444 6889999999999999999999999999999999999999999999
Q ss_pred EEEeeeccchHHHHHHHH
Q 026063 104 QTLIVDIEPDEHVKRAMN 121 (244)
Q Consensus 104 ~V~I~~i~~p~~i~~ai~ 121 (244)
+|+|++|++|+++.+++.
T Consensus 108 ~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 108 SFTIKDITDTDGYLNNLG 125 (128)
T ss_pred EEeeEEecCCCCCHHHcC
Confidence 999999999999887764
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.31 E-value=5.3e-12 Score=99.68 Aligned_cols=72 Identities=13% Similarity=0.294 Sum_probs=66.2
Q ss_pred HHHHHhhHHHHHHHhhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchHHHHHHHHHH
Q 026063 52 QEILTTSCLGLVIRASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEI 123 (244)
Q Consensus 52 ~~~i~~~~v~~~lR~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~~i~~ai~~~ 123 (244)
.+.++.+.+.+++|+++|+++++++++ +|++|+..+.+.+++.+.+|||.|.+|.|++++||+++.+||+++
T Consensus 51 ~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 51 ARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred hheeechhHHHHHHHHhcCCCHHHHhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 344444789999999999999999997 799999999999999999999999999999999999999999764
No 21
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.30 E-value=9.7e-11 Score=106.16 Aligned_cols=146 Identities=21% Similarity=0.168 Sum_probs=110.7
Q ss_pred HHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccchH--HHHHHHHHHHHHHHHHHHHH---
Q 026063 60 LGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDE--HVKRAMNEINAAARLRLAAN--- 134 (244)
Q Consensus 60 v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~--~i~~ai~~~~~Aer~~~A~~--- 134 (244)
+..++|.++|+||++|+|.+|+++...+++.....+.++||.|.+..|+|+...+ ++..++.+...++-.+.|.+
T Consensus 102 lEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGka~taev~rdArIgvA 181 (428)
T KOG2668|consen 102 LEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGKATTAEVARDARIGVA 181 (428)
T ss_pred hhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhhHHHHHHHhhcccchH
Confidence 5668999999999999999999999999999999999999999999999998766 68887765444332221111
Q ss_pred --------------------------------------------------------------------------------
Q 026063 135 -------------------------------------------------------------------------------- 134 (244)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (244)
T Consensus 182 EAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dveV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr 261 (428)
T KOG2668|consen 182 EAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDVEVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVER 261 (428)
T ss_pred HhhhhcchhhhhHHHHHhHHhhhhhhhHHHhhhhHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence
Q ss_pred ----------------------------------HHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHH
Q 026063 135 ----------------------------------EKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAF 180 (244)
Q Consensus 135 ----------------------------------~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~ 180 (244)
..||+++...+..|++|++..+.+++|||.++...|.++++.+.+-
T Consensus 262 ~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~k 341 (428)
T KOG2668|consen 262 TKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAK 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 1244445556677888888888888888888888888888888888
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHHHhc
Q 026063 181 SENVPGTSSKDVMDMVLVTQYFDTMKEIGA 210 (244)
Q Consensus 181 a~a~~~~~~~~~~~~~l~~ryleal~~i~~ 210 (244)
+++|..+ .+++.+ .-.|++|+.++.
T Consensus 342 a~v~~~y--~~aa~l---~~lLealp~Ia~ 366 (428)
T KOG2668|consen 342 AEVYQAY--AQAAYL---RTLLEALPMIAA 366 (428)
T ss_pred HHHHHHh--hhhHHH---HHHHHHHHHHHH
Confidence 8877643 333322 336899998873
No 22
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.21 E-value=2.5e-11 Score=103.32 Aligned_cols=89 Identities=18% Similarity=0.295 Sum_probs=78.2
Q ss_pred eEEEEeecccce---------eeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh--HHHHHHHHHHHHHHHHhhcCcEE
Q 026063 34 ISSAILDRRSKR---------MSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAMSHYGYEI 102 (244)
Q Consensus 34 ~~~~i~d~~~~~---------~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~--R~~i~~~I~~~l~~~~~~~GI~V 102 (244)
++|+|.||.+++ |.+++.+..+. +.+++++|+++|++++++++.+ |++|+..+++.+++.+.+|||+|
T Consensus 107 ~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~~Gi~i 185 (207)
T cd03408 107 YSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLR-ALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLEL 185 (207)
T ss_pred EEEEEcCHHHHHHHhcCCCcceeHHHHHHHHH-HHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHhcCcEE
Confidence 467888988655 33345666666 7999999999999999999986 99999999999999999999999
Q ss_pred EEEEeeeccchHHHHHHHHHH
Q 026063 103 VQTLIVDIEPDEHVKRAMNEI 123 (244)
Q Consensus 103 ~~V~I~~i~~p~~i~~ai~~~ 123 (244)
.+|.|++|.+|++++++|+++
T Consensus 186 ~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 186 VSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred EEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999998764
No 23
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.18 E-value=1.6e-10 Score=88.62 Aligned_cols=91 Identities=25% Similarity=0.435 Sum_probs=79.7
Q ss_pred ceEEEEeecccceeeccchHH-HHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 33 FISSAILDRRSKRMSLMSLQE-ILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 33 ~~~~~i~d~~~~~~~v~~~~~-~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
.++|+|-|+....|...+... .+..+.+..++|+++++++++++.++|++|...+++.+...++.||+.|.+|.|.++.
T Consensus 29 ~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~ 108 (121)
T cd02106 29 VVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDID 108 (121)
T ss_pred EEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecC
Confidence 457888888866666655542 3444789999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 026063 112 PDEHVKRAMNEI 123 (244)
Q Consensus 112 ~p~~i~~ai~~~ 123 (244)
+|+++.++++++
T Consensus 109 ~~~~~~~ai~~~ 120 (121)
T cd02106 109 PPEEVQEAMEDR 120 (121)
T ss_pred CCHHHHHHHHhh
Confidence 999999999775
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.73 E-value=2.7e-07 Score=89.01 Aligned_cols=147 Identities=20% Similarity=0.202 Sum_probs=109.0
Q ss_pred cchhhhhhhhccCCcccccccccccceEEEEe-ecc------------cceeeccc-h---------------HH---HH
Q 026063 8 PRTMCLLMWLLPFNTEPWQRRLQMPFISSAIL-DRR------------SKRMSLMS-L---------------QE---IL 55 (244)
Q Consensus 8 ~~~~~~l~~~~p~~~~~~~~~l~~~~~~~~i~-d~~------------~~~~~v~~-~---------------~~---~i 55 (244)
+-...|.+|++|+. +-..|+.+..+..++. +.+ -++..|-+ . ++ ..
T Consensus 62 ~vV~gGg~~v~Pi~--q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~ 139 (548)
T COG2268 62 KVVRGGGAIVMPIF--QTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQL 139 (548)
T ss_pred cEEecCceEEecce--eeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHH
Confidence 33467888999997 4445777666654333 110 12222222 1 11 12
Q ss_pred HhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccch-------HHHHHHHHHHHHHHH
Q 026063 56 TTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEPD-------EHVKRAMNEINAAAR 128 (244)
Q Consensus 56 ~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p-------~~i~~ai~~~~~Aer 128 (244)
..+...++||.+++++|+.+++++|..+...|.+.+...++..|+.++++.|+++..+ ..+.++...+..++-
T Consensus 140 ~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~qv 219 (548)
T COG2268 140 AEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIAQV 219 (548)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHHHH
Confidence 2355788999999999999999999999999999999999999999999999999999 899999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhH
Q 026063 129 LRLAANEKAEAEKILQIKRAEGEAESKY 156 (244)
Q Consensus 129 ~~~A~~~~Aegek~a~i~~Aeaeaea~~ 156 (244)
.+++.+..+|.+++..+..++++.++..
T Consensus 220 ~~~a~ia~~E~~~~t~i~i~~a~~~a~~ 247 (548)
T COG2268 220 LQDAEIAENEAEKETEIAIAEANRDAKL 247 (548)
T ss_pred HHHHHHHHhhhhhhhHHHHHhhhhHHHH
Confidence 7777777777777777766655555543
No 25
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=98.62 E-value=3.5e-06 Score=73.23 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred hhhhhhccCC--ccccccccccc---ceEE-------EEeecc--------cce------eeccchHHHHHhhHHHHHHH
Q 026063 12 CLLMWLLPFN--TEPWQRRLQMP---FISS-------AILDRR--------SKR------MSLMSLQEILTTSCLGLVIR 65 (244)
Q Consensus 12 ~~l~~~~p~~--~~~~~~~l~~~---~~~~-------~i~d~~--------~~~------~~v~~~~~~i~~~~v~~~lR 65 (244)
-|.++.|||+ ++.+...||.. .+-| -.+|+. .+. |.| |+...++-+-+---+.
T Consensus 47 PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NYtv-dYD~~lIfnKiHHE~N 125 (322)
T KOG2962|consen 47 PGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTV-DYDKTLIFNKIHHELN 125 (322)
T ss_pred CCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHccc-CCcchhhhhHHHHHHH
Confidence 3677889997 67777777732 1111 112211 111 221 2344444344555677
Q ss_pred hhcCCCCHHHHHh-hHHHHHHHHHHHHHHHHhhc--CcEEEEEEeeeccchHHHHHHHHHHHHHHHHH--------HHHH
Q 026063 66 ASVPKLDLDATFE-QKNDIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDEHVKRAMNEINAAARLR--------LAAN 134 (244)
Q Consensus 66 ~vig~~tldeil~-~R~~i~~~I~~~l~~~~~~~--GI~V~~V~I~~i~~p~~i~~ai~~~~~Aer~~--------~A~~ 134 (244)
...+.|||.+++- --++|...++..++..+..+ |+.|..|+++....|+.+++.+ ..|++|+-+ +-..
T Consensus 126 QFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~-E~ME~EkTKlLiA~ekQkVvE 204 (322)
T KOG2962|consen 126 QFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNF-ELMEAEKTKLLIAAEKQKVVE 204 (322)
T ss_pred hHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhH-HHHHHHhhhhHHHHHHHHHHH
Confidence 7788899999987 47899999999999999887 9999999999999999999887 456666532 1123
Q ss_pred HHHHHHHHHHHHHhhhHHHhhH
Q 026063 135 EKAEAEKILQIKRAEGEAESKY 156 (244)
Q Consensus 135 ~~Aegek~a~i~~Aeaeaea~~ 156 (244)
.+||.++...+++||--++.+.
T Consensus 205 KeAETerkkAviEAEK~AqVa~ 226 (322)
T KOG2962|consen 205 KEAETERKKAVIEAEKNAQVAK 226 (322)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 4677777777777776655443
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=97.98 E-value=5.4e-05 Score=65.59 Aligned_cols=88 Identities=24% Similarity=0.315 Sum_probs=71.7
Q ss_pred EEEEeeccc---------ceeeccchHHHHHhhHHHHHHHhhcC--CCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063 35 SSAILDRRS---------KRMSLMSLQEILTTSCLGLVIRASVP--KLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIV 103 (244)
Q Consensus 35 ~~~i~d~~~---------~~~~v~~~~~~i~~~~v~~~lR~vig--~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~ 103 (244)
+.+|.||.. ..|..++..+.+. +.+.+.+-++++ ++++.++-++-++|++.+++.++..++.||+++.
T Consensus 108 s~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~-~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~~Gi~l~ 186 (211)
T PF13421_consen 108 SFRIVDPVLFIRNLVGTQSEFTTEEINEQLR-SEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFERYGIELV 186 (211)
T ss_pred EEEEeCHHHHHHhhCCCCCcccHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEE
Confidence 458888773 4466666666665 455555666665 4788899889999999999999999999999999
Q ss_pred EEEeeeccchHHHHHHHHHH
Q 026063 104 QTLIVDIEPDEHVKRAMNEI 123 (244)
Q Consensus 104 ~V~I~~i~~p~~i~~ai~~~ 123 (244)
++.|.+|.+|+++++++.++
T Consensus 187 ~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 187 DFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred EEEEEeecCCHHHHHHHHHH
Confidence 99999999999999998765
No 27
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.65 E-value=0.00018 Score=62.77 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhcCcEEEEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHH
Q 026063 87 VEEELEKAMSHYGYEIVQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQ 165 (244)
Q Consensus 87 I~~~l~~~~~~~GI~V~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea 165 (244)
|.+.+.+.+..- +.=-.+.|.++.+.+ .+-+.+.+.+.. ...|+.++.+...+|+|++++.+++|+|++++
T Consensus 121 i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~-------~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~ 192 (242)
T cd03405 121 LMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYR-------RMRAERERIAAEFRAEGEEEAERIRADADRER 192 (242)
T ss_pred HHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 444444444331 222468888888753 344554444332 23566777788899999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHhc
Q 026063 166 RQAIVDGLRDSVLAFSEN 183 (244)
Q Consensus 166 ~~~~Aea~a~a~~~~a~a 183 (244)
.++.|+|++++...-+++
T Consensus 193 ~~~~Aea~a~a~~~~a~g 210 (242)
T cd03405 193 TVILAEAYREAQEIRGEG 210 (242)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 999999999887777654
No 28
>PTZ00491 major vault protein; Provisional
Probab=97.41 E-value=0.0023 Score=64.84 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=53.3
Q ss_pred cceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhH-HHHHHHHHHHHHHH--------HhhcCcEEEEEEeeeccch
Q 026063 43 SKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQK-NDIAKAVEEELEKA--------MSHYGYEIVQTLIVDIEPD 113 (244)
Q Consensus 43 ~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R-~~i~~~I~~~l~~~--------~~~~GI~V~~V~I~~i~~p 113 (244)
...|+|.|.---.- ..+.+.+|..+++.++++.-.+- .-|...|....++. +...|+.|.+|.|+++.|-
T Consensus 563 ~k~Fsv~DFvGd~C-k~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvEpv 641 (850)
T PTZ00491 563 QKCFSVPDFVGDAC-KTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVEPV 641 (850)
T ss_pred hheeccCchHHHHH-HHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeeeec
Confidence 47788877655555 36889999999999999997643 33444444422222 3456999999999999984
Q ss_pred H-HHHHHH
Q 026063 114 E-HVKRAM 120 (244)
Q Consensus 114 ~-~i~~ai 120 (244)
+ ..++++
T Consensus 642 D~~tr~~L 649 (850)
T PTZ00491 642 DERTRDSL 649 (850)
T ss_pred CHHHHHHH
Confidence 4 344444
No 29
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=97.32 E-value=0.0017 Score=59.95 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=57.1
Q ss_pred EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
.|+|.++.+-+ ..-..+.+.+.. ..+||.++.+...+|+|++++.+++++|+.++.++.|+|++++...-++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~-------~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae 274 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYN-------RMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE 274 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 57888888754 445555544442 2368888889999999999999999999999999999999887766665
Q ss_pred c
Q 026063 183 N 183 (244)
Q Consensus 183 a 183 (244)
.
T Consensus 275 g 275 (334)
T PRK11029 275 G 275 (334)
T ss_pred h
Confidence 3
No 30
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=97.27 E-value=0.0021 Score=58.93 Aligned_cols=73 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred EEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHH
Q 026063 103 VQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFS 181 (244)
Q Consensus 103 ~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a 181 (244)
..+.|.++.+-+ ..-..+.+.+.. ...||.++.+...+++|++++..+.++|++++.++.|+|++++...-+
T Consensus 191 ~Gi~V~~V~I~~i~~p~~v~~Ai~~-------~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a~~~~A 263 (317)
T TIGR01932 191 IGIEVVDVRIKKINYSDELSESIYN-------RMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTARIIKG 263 (317)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666633 333444333333 235777778888899999999999999999999999998877755555
Q ss_pred h
Q 026063 182 E 182 (244)
Q Consensus 182 ~ 182 (244)
+
T Consensus 264 e 264 (317)
T TIGR01932 264 E 264 (317)
T ss_pred h
Confidence 4
No 31
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0022 Score=57.58 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=75.7
Q ss_pred EEEEeecc---------cceeeccchHHHHHhhHHHHHHHhhcCCCCHH--HHHhhHHHHHHHHHHHHHHHHhhcCcEEE
Q 026063 35 SSAILDRR---------SKRMSLMSLQEILTTSCLGLVIRASVPKLDLD--ATFEQKNDIAKAVEEELEKAMSHYGYEIV 103 (244)
Q Consensus 35 ~~~i~d~~---------~~~~~v~~~~~~i~~~~v~~~lR~vig~~tld--eil~~R~~i~~~I~~~l~~~~~~~GI~V~ 103 (244)
+.+|.||. +-.|.|+|..+.+. +.+..+|-..|+++-.+ .+-++--+|+.-+.+.|++.+..+|..|+
T Consensus 135 s~kvtDpi~fi~~I~g~~dvy~v~di~~q~l-s~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~Gm~v~ 213 (345)
T COG4260 135 SIKVTDPILFIQQIPGNRDVYTVDDINQQYL-SEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQYGMAVD 213 (345)
T ss_pred EEEecCHHHHHHhccCCCceEEHHHHHHHHH-HHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHHhhCceEe
Confidence 45788866 45689999888888 68888999999887543 45457779999999999999999999999
Q ss_pred EEEeeeccchHHHHHHHHHHH
Q 026063 104 QTLIVDIEPDEHVKRAMNEIN 124 (244)
Q Consensus 104 ~V~I~~i~~p~~i~~ai~~~~ 124 (244)
+|.|-+|.+|++.+..++.+.
T Consensus 214 sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 214 SFQVASISYPDESQALINMRN 234 (345)
T ss_pred eEEEEEecCcHHHHHHHHhhc
Confidence 999999999999999998764
No 32
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=97.04 E-value=0.0064 Score=53.76 Aligned_cols=73 Identities=14% Similarity=0.082 Sum_probs=52.3
Q ss_pred EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
.+.|.++.+-. ..-..+.+.+.. ...|+.++++.+.+|+++++..+.+|+|+|++.+..|+|.+++....++
T Consensus 134 GI~V~~v~I~~i~~p~~v~~a~~~-------~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~ 206 (261)
T TIGR01933 134 GITVTDVNFQSARPPEEVKEAFDD-------VIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAK 206 (261)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888887754 334444333322 2346667777888888888888889999999888888888888777766
Q ss_pred c
Q 026063 183 N 183 (244)
Q Consensus 183 a 183 (244)
+
T Consensus 207 g 207 (261)
T TIGR01933 207 G 207 (261)
T ss_pred h
Confidence 4
No 33
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.89 E-value=0.0049 Score=54.62 Aligned_cols=146 Identities=11% Similarity=0.138 Sum_probs=87.5
Q ss_pred ceeeccchHHHHHh-hHHHHHHHhhcCCCCHHHHHhhH--HHH-H---HHHHHHHHHHHhh-cCcEEEEEEeeeccchH-
Q 026063 44 KRMSLMSLQEILTT-SCLGLVIRASVPKLDLDATFEQK--NDI-A---KAVEEELEKAMSH-YGYEIVQTLIVDIEPDE- 114 (244)
Q Consensus 44 ~~~~v~~~~~~i~~-~~v~~~lR~vig~~tldeil~~R--~~i-~---~~I~~~l~~~~~~-~GI~V~~V~I~~i~~p~- 114 (244)
.+|.|.|+...+.. ......++..+-. .+.++++.. +++ + ..+.+.+.+.++. .+-.-..+.|.++.+-+
T Consensus 94 v~yrI~d~~~~~~~~~~~~~~l~~~~~~-~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i 172 (266)
T cd03404 94 VQYRISDPYDYLFNVRDPEGTLRQAAES-AMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDA 172 (266)
T ss_pred EEEEECCHHHHHhhCCCHHHHHHHHHHH-HHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeC
Confidence 67999887655431 0011222222211 233333321 122 1 2344444444433 22212269999998864
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHH
Q 026063 115 HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMD 194 (244)
Q Consensus 115 ~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~ 194 (244)
..-..+.+.+.+ ...|+.++++.+.+|++++++.+.+|+|+|++.++.|+|++++...-+++ ++-.
T Consensus 173 ~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~-------~a~~ 238 (266)
T cd03404 173 DPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQG-------EAAR 238 (266)
T ss_pred CCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHH-------HHHH
Confidence 445656554443 34577778888889999999999999999999999999999988777764 2222
Q ss_pred HHHHHHHHHHHHH
Q 026063 195 MVLVTQYFDTMKE 207 (244)
Q Consensus 195 ~~l~~ryleal~~ 207 (244)
+.-|.+++++
T Consensus 239 ---~~~~~~a~~~ 248 (266)
T cd03404 239 ---FESLLAEYKK 248 (266)
T ss_pred ---HHHHHHHHhh
Confidence 3446777763
No 34
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.88 E-value=0.003 Score=56.14 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=57.3
Q ss_pred EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
.+.|.++.+-+ ..-+.+...+. ....|+.++++.+.+|+|++.+.+..|+|+|++.++.|+|.+++...+++
T Consensus 128 GI~V~~v~I~~i~~p~~v~~A~~-------~~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~ 200 (262)
T cd03407 128 GFEIVATLITDIDPDAEVKRAMN-------EINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIAD 200 (262)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 56666665533 23333333332 34578889999999999999999999999999999999999999999988
Q ss_pred cC
Q 026063 183 NV 184 (244)
Q Consensus 183 a~ 184 (244)
+.
T Consensus 201 g~ 202 (262)
T cd03407 201 GL 202 (262)
T ss_pred HH
Confidence 64
No 35
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=96.75 E-value=0.0035 Score=55.69 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=82.7
Q ss_pred cchHHHHHHHHHHHHH----------------HHHHHH--HHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhh
Q 026063 111 EPDEHVKRAMNEINAA----------------ARLRLA--ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDG 172 (244)
Q Consensus 111 ~~p~~i~~ai~~~~~A----------------er~~~A--~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea 172 (244)
++...+.+++++.|.+ ++-++| ++.+||..|.+.+.++||++++.+.+|||++++..+-.+|
T Consensus 125 ~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg 204 (301)
T KOG2620|consen 125 SLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEG 204 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHH
Confidence 4456777888777766 223444 5678888899999999999999999999999999998887
Q ss_pred hhHHHHHHHhcCCC------CCch-----hHHHHH-----HHHHHHHHHHHHhcCCCC-cEEEecCCCCchhHHHHHHHH
Q 026063 173 LRDSVLAFSENVPG------TSSK-----DVMDMV-----LVTQYFDTMKEIGASSKT-NSVFIPHGPGAVKDIASQIRE 235 (244)
Q Consensus 173 ~a~a~~~~a~a~~~------~~~~-----~~~~~~-----l~~ryleal~~i~~~~~~-~~ivlp~~~~~~~~~~~~~~~ 235 (244)
.+.--..+++...+ .+-+ .++++. -.-.|.++.+.+..+++- +.-=--.=|.|.+++.+++.|
T Consensus 205 ~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQ 284 (301)
T KOG2620|consen 205 IARQRQNIADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQ 284 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHH
Confidence 65332222221110 0000 111222 125688888888644321 110011236788899999999
Q ss_pred HHHhhh
Q 026063 236 GLLQAN 241 (244)
Q Consensus 236 ~~~~~~ 241 (244)
++.--.
T Consensus 285 a~~~~~ 290 (301)
T KOG2620|consen 285 ALNGYK 290 (301)
T ss_pred HHHHHH
Confidence 987543
No 36
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=95.93 E-value=0.044 Score=52.24 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=72.5
Q ss_pred ceeeccchHHHHHh-hHHHHHHHhhcCCCCHHHHHhhH--HHHH----HHHHHHHHHHHhhcCcEE--EEEEeeeccchH
Q 026063 44 KRMSLMSLQEILTT-SCLGLVIRASVPKLDLDATFEQK--NDIA----KAVEEELEKAMSHYGYEI--VQTLIVDIEPDE 114 (244)
Q Consensus 44 ~~~~v~~~~~~i~~-~~v~~~lR~vig~~tldeil~~R--~~i~----~~I~~~l~~~~~~~GI~V--~~V~I~~i~~p~ 114 (244)
..|+|.|+...+.. ......|+.++ .-.+.+++..+ +++- ..|...+.+.+... +.= ..|+|.++.+-+
T Consensus 163 VqYrI~Dp~~~lf~v~~~~~~L~~~~-~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~d 240 (419)
T PRK10930 163 VQYRVTDPEKYLFSVTSPDDSLRQAT-DSALRGVIGKYTMDRILTEGRTVIRSDTQRELEET-IRPYDMGITLLDVNFQA 240 (419)
T ss_pred EEEEECCHHHHHHhccCHHHHHHHHH-HHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHH-HhhcCCCeEEEEEEEee
Confidence 56888887665531 01233344333 12344444422 2221 23444555555441 111 247778887743
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 115 -HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 115 -~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
..=+.+.. | =..+..|+.++++.+.+|++++...+.+|+|+|+++...|+|.+++...-++
T Consensus 241 i~pP~eV~~---A----f~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~Ae 302 (419)
T PRK10930 241 ARPPEEVKA---A----FDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQ 302 (419)
T ss_pred cCCCHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22233321 1 1134456777778888889998888889999888888888887766444443
No 37
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.12 Score=46.24 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=91.9
Q ss_pred hhhhhhhccCC--cccccccccccceEEEEe--------ecc------cceeeccchHHHHHh-hHHHHHHHhhcCCCCH
Q 026063 11 MCLLMWLLPFN--TEPWQRRLQMPFISSAIL--------DRR------SKRMSLMSLQEILTT-SCLGLVIRASVPKLDL 73 (244)
Q Consensus 11 ~~~l~~~~p~~--~~~~~~~l~~~~~~~~i~--------d~~------~~~~~v~~~~~~i~~-~~v~~~lR~vig~~tl 73 (244)
.-||+|+|||. ......+++++..++++. |-. -.+|+|.|+...+.. +.....++..+. -++
T Consensus 44 ~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~l~~~~~-~~l 122 (291)
T COG0330 44 EPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQ-SAL 122 (291)
T ss_pred CCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCHHHHHHhcCCHHHHHHHHHH-HHH
Confidence 46999999994 234445666654444442 211 377999998855541 011112221111 122
Q ss_pred HHHHhhH--HHH---HH-HHHHHHHHHHhhcCcEEEEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026063 74 DATFEQK--NDI---AK-AVEEELEKAMSHYGYEIVQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIK 146 (244)
Q Consensus 74 deil~~R--~~i---~~-~I~~~l~~~~~~~GI~V~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~ 146 (244)
..++..+ +++ .. .+...+.+.++. +..=..+.+.++.+-. ..-..+.. .-.....||.++.+.+.
T Consensus 123 R~vig~~~~~e~~~~~~~~i~~~i~~~l~~-~~~~~Gi~V~~V~i~~i~~p~ev~~-------a~~~~~~Aer~~ra~i~ 194 (291)
T COG0330 123 RSVIGRMTLDELLTERRAEINAKIREILDE-AADPWGIKVVDVEIKDIDPPEEVQA-------AMEKQMAAERDKRAEIL 194 (291)
T ss_pred HHHHccccHHHHhhCchHHHHHHHHHHHHH-hhhhcCcEEEEEEEeecCCCHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 2222221 111 01 222222222222 2333455556665533 22233322 33345678889999999
Q ss_pred HhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhc
Q 026063 147 RAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSEN 183 (244)
Q Consensus 147 ~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a 183 (244)
+|++++++.+++|+|++++..+.++|.+++ +.++++
T Consensus 195 ~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a 230 (291)
T COG0330 195 EAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARA 230 (291)
T ss_pred HhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhh
Confidence 999999999999999999999999999887 555554
No 38
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=0.86 Score=44.77 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=46.9
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhc--------CCCCcEEEe
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGA--------SSKTNSVFI 219 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~--------~~~~~~ivl 219 (244)
+++++++.+..+.++|++.+..+.|++++.+.+++++...++...... +...+++|+.+++ -+..+++.+
T Consensus 411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~a~~--~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i 488 (548)
T COG2268 411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAAAEL--FKALVQALPEVAEEAAQPMKNIDSEKVRVI 488 (548)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 345677777777888888888888888888899988865433312222 2355677776653 134456666
Q ss_pred cCC
Q 026063 220 PHG 222 (244)
Q Consensus 220 p~~ 222 (244)
|..
T Consensus 489 ~~~ 491 (548)
T COG2268 489 GGA 491 (548)
T ss_pred CCc
Confidence 643
No 39
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=91.25 E-value=0.47 Score=39.71 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=27.9
Q ss_pred EEEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHH
Q 026063 103 VQTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIAR 164 (244)
Q Consensus 103 ~~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAe 164 (244)
-.+.|.++.+-+ .+-+.+.+.+.+.+.++....+|+ ..+.+|++|+++.+++|+|+|+
T Consensus 136 ~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~q~~~~a~----~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 136 FGIILDDVSITHLTFSKEFTKAVEAKQVAQQEAERAK----FVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred CCeEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhh
Confidence 456677776654 444555444444433332222221 2334455555555555555543
No 40
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=90.32 E-value=0.89 Score=37.77 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=53.2
Q ss_pred ceeeccch--HHHHH--hhHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 44 KRMSLMSL--QEILT--TSCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 44 ~~~~v~~~--~~~i~--~~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
..|.+.|. ...+. .+.+++.+...+++.|.+++-+ +++++..+|++.++..+..-| .|.+|.++++.
T Consensus 85 i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~dV~fT~fi 157 (159)
T COG1580 85 ITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVKDVLFTNFI 157 (159)
T ss_pred EEEeeCCHHHHHHHHHhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeEEEeeehhh
Confidence 44666661 22222 3469999999999999999988 699999999999999998876 88888888764
No 41
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=87.98 E-value=4 Score=34.81 Aligned_cols=48 Identities=21% Similarity=0.099 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063 115 HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 115 ~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae 162 (244)
++.+.|..+...+-+.+|..+.+++++++..+.++|++++..+..+|+
T Consensus 7 ~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe 54 (198)
T PRK01558 7 DLINKIKKDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAE 54 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666655555544444444444444333
No 42
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=0.67 Score=40.62 Aligned_cols=26 Identities=4% Similarity=-0.063 Sum_probs=15.9
Q ss_pred hhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 157 LAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 157 ~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
.+|+-+..+..+.|||++++.+.+++
T Consensus 201 eKAeQqk~aavIsAEGds~aA~li~~ 226 (271)
T KOG3083|consen 201 EKAEQQKKAAVISAEGDSKAAELIAN 226 (271)
T ss_pred HHHhhhhhhheeecccchHHHHHHHH
Confidence 44555555666666777776666654
No 43
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=86.35 E-value=14 Score=28.79 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhch-----------------hhHHHHHHHhhhhhHHHHHH
Q 026063 118 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL-----------------GIARQRQAIVDGLRDSVLAF 180 (244)
Q Consensus 118 ~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Ae-----------------aeAea~~~~Aea~a~a~~~~ 180 (244)
+.+...-.++......+..|+-++...+..|..++...+.+++ ++.++..+.++|.+++-.++
T Consensus 7 Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~ 86 (108)
T COG2811 7 EVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAIL 86 (108)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555554444444332 34455566666666666666
Q ss_pred Hh
Q 026063 181 SE 182 (244)
Q Consensus 181 a~ 182 (244)
++
T Consensus 87 ~k 88 (108)
T COG2811 87 SK 88 (108)
T ss_pred HH
Confidence 65
No 44
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=85.79 E-value=2.3 Score=39.61 Aligned_cols=55 Identities=24% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhh-----hhhHHHHHHHhcC
Q 026063 130 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVD-----GLRDSVLAFSENV 184 (244)
Q Consensus 130 ~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Ae-----a~a~a~~~~a~a~ 184 (244)
+...+..|++|......+-++|+.++...|.+||+....+|+ +++.-++++.+++
T Consensus 302 k~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLeal 361 (428)
T KOG2668|consen 302 KELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEAL 361 (428)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 334555666666666666666666666666666666655543 3334455565555
No 45
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=85.17 E-value=1.5 Score=37.13 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=13.3
Q ss_pred hhhHHHhhHhhchhhHHHHHHHhhhh
Q 026063 148 AEGEAESKYLAGLGIARQRQAIVDGL 173 (244)
Q Consensus 148 Aeaeaea~~~~AeaeAea~~~~Aea~ 173 (244)
|+.++++.+.+|+|++++.++.++|+
T Consensus 156 A~~~~~a~i~~A~ge~~a~~~~aea~ 181 (215)
T cd03403 156 AEREKRAKIIEAEGERQAAILLAEAA 181 (215)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455555555555555555553
No 46
>PTZ00491 major vault protein; Provisional
Probab=84.95 E-value=7.2 Score=40.33 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=12.4
Q ss_pred cCcEEEEEEeeeccchHHHHHHH
Q 026063 98 YGYEIVQTLIVDIEPDEHVKRAM 120 (244)
Q Consensus 98 ~GI~V~~V~I~~i~~p~~i~~ai 120 (244)
++|.|.+|+..|-..-+.+++++
T Consensus 631 t~VDvqsvEpvD~~tr~~LqkSV 653 (850)
T PTZ00491 631 TNVDVQSVEPVDERTRDSLQKSV 653 (850)
T ss_pred EEEeeeeeeecCHHHHHHHHHHH
Confidence 44555555555555555555444
No 47
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=84.09 E-value=4.2 Score=34.73 Aligned_cols=8 Identities=0% Similarity=0.160 Sum_probs=3.8
Q ss_pred CCcEEEec
Q 026063 213 KTNSVFIP 220 (244)
Q Consensus 213 ~~~~ivlp 220 (244)
+.-.|++|
T Consensus 119 ~~~~I~~~ 126 (198)
T PRK01558 119 DKLEIILN 126 (198)
T ss_pred CCeeEEEC
Confidence 33345555
No 48
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=81.02 E-value=12 Score=31.24 Aligned_cols=44 Identities=20% Similarity=0.046 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063 119 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 119 ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae 162 (244)
.+-..+..+-++++..+.+++++++..+.+++++++..+..++.
T Consensus 5 ~i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~ 48 (188)
T PRK02292 5 TVVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDRE 48 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666667777777777776666666665555443
No 49
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=80.83 E-value=14 Score=30.97 Aligned_cols=20 Identities=25% Similarity=-0.117 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026063 128 RLRLAANEKAEAEKILQIKR 147 (244)
Q Consensus 128 r~~~A~~~~Aegek~a~i~~ 147 (244)
-++++....+++++++..+.
T Consensus 25 a~~~~~~i~~ea~~~a~~i~ 44 (188)
T PRK02292 25 ADEEAEEIIAEAEADAEEIL 44 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444443
No 50
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=80.28 E-value=7.3 Score=28.74 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=42.3
Q ss_pred hHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeec
Q 026063 58 SCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 110 (244)
Q Consensus 58 ~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i 110 (244)
..+++.+-..+++++.+++-+ +++.+..++.+.+++.+.+ -.|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 458889999999999999986 6899999999999988843 34888888765
No 51
>PLN03086 PRLI-interacting factor K; Provisional
Probab=80.01 E-value=4.1 Score=40.38 Aligned_cols=27 Identities=11% Similarity=0.438 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCCchhHHHH
Q 026063 200 QYFDTMKEIGASSKTNSVFIPHGPGAVKDIAS 231 (244)
Q Consensus 200 ryleal~~i~~~~~~~~ivlp~~~~~~~~~~~ 231 (244)
+-|+++... ++++.|+|| |+-|.++..
T Consensus 80 ~~~~~~~~~---~~GdKI~LP--pSaL~~L~~ 106 (567)
T PLN03086 80 RIFEAVSFQ---GNGDKIKLP--PSCFTELSD 106 (567)
T ss_pred EEeeccccC---CCCCeEEcC--HHHHHHHHh
Confidence 344444433 566789999 776666654
No 52
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=74.41 E-value=5.5 Score=36.03 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=41.4
Q ss_pred EEEeeeccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHhhHhhchhhHHHHHHH
Q 026063 104 QTLIVDIEPDE-HVKRAMNEINAAARLRLAANEKAEAEKI--------LQIKRAEGEAESKYLAGLGIARQRQAI 169 (244)
Q Consensus 104 ~V~I~~i~~p~-~i~~ai~~~~~Aer~~~A~~~~Aegek~--------a~i~~Aeaeaea~~~~AeaeAea~~~~ 169 (244)
.+.|.++.+-. ..-+.+...+ ...+||.++. +.+.+|||++.+.+++|+|+|+-..+.
T Consensus 144 GI~I~dV~I~~id~P~~V~~af--------erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~ 210 (280)
T cd03406 144 GLEIQAVRVTKPKIPEAIRRNY--------ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKIL 210 (280)
T ss_pred CcEEEEEEEEecCCCHHHHHHH--------HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Confidence 67778877743 4455554433 2335666666 889999999999999999998776554
No 53
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=73.67 E-value=26 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhh
Q 026063 119 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 158 (244)
Q Consensus 119 ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~ 158 (244)
.|..-+.||++...-+..|..+|..++..|+.+|+.-+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888877775543
No 54
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=73.03 E-value=10 Score=30.59 Aligned_cols=50 Identities=10% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeec
Q 026063 59 CLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 110 (244)
Q Consensus 59 ~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i 110 (244)
.+++.+=..+++.+.+++-+ +|+.+..++.+.++..+.+ | .|.+|.+++.
T Consensus 88 ~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 88 QVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 47788888999999999987 6999999999999988875 4 6888888765
No 55
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=72.46 E-value=63 Score=27.89 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHH
Q 026063 134 NEKAEAEKILQIKRAEGEAESKYLAGLGIARQR 166 (244)
Q Consensus 134 ~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~ 166 (244)
+..|+.+++..+..|+.+++..+..|+.+++..
T Consensus 33 l~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 33 VHNAKEQAKRIIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554444333
No 56
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=71.47 E-value=23 Score=27.79 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHH--hhhhhHHHHHHHhcC
Q 026063 130 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAI--VDGLRDSVLAFSENV 184 (244)
Q Consensus 130 ~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~--Aea~a~a~~~~a~a~ 184 (244)
-..+...||.+++..+..|...+...+-+|+.+|+.-... ++-+.+--+..++..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~ 63 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHL 63 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556778888888888888888888888887776654443 344444334444443
No 57
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.02 E-value=9.9 Score=33.56 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=11.5
Q ss_pred HHHhhhHHHhhHhhchhh
Q 026063 145 IKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 145 i~~Aeaeaea~~~~Aeae 162 (244)
+.+|+.|++..+.+|+||
T Consensus 211 VekA~qek~~~ivrAqGE 228 (290)
T KOG3090|consen 211 VEKAEQEKQSAIVRAQGE 228 (290)
T ss_pred hHHHHHhhhhhhhhhccc
Confidence 356777777766666655
No 58
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=69.59 E-value=16 Score=29.41 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=44.8
Q ss_pred hHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhc-C-cEEEEEEeeecc
Q 026063 58 SCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDIE 111 (244)
Q Consensus 58 ~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~-G-I~V~~V~I~~i~ 111 (244)
+.+++.+=..+++.+.+++.+ +|+.+..++.+.++..+..- | -.|.+|.+++.-
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~FV 135 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKYI 135 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeeee
Confidence 348889999999999999987 79999999999999998753 2 358888887753
No 59
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=69.16 E-value=21 Score=32.37 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=15.6
Q ss_pred hHHHHHHHhhhhhHHHHHHHhc
Q 026063 162 IARQRQAIVDGLRDSVLAFSEN 183 (244)
Q Consensus 162 eAea~~~~Aea~a~a~~~~a~a 183 (244)
+|.+..+-|+|+..|.+.+.++
T Consensus 217 eA~Akviaaege~~as~al~~a 238 (288)
T KOG2621|consen 217 EARAKVIAAEGEKKASEALKEA 238 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHh
Confidence 4556667788888887777665
No 60
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=68.20 E-value=45 Score=25.45 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026063 119 AMNEINAAARLRLAANEKAEAEKILQIKRAEGE 151 (244)
Q Consensus 119 ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeae 151 (244)
.+...-.+|.+.+..+..|+.+.+..+..|..+
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~ 36 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEE 36 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555444444433
No 61
>PRK13665 hypothetical protein; Provisional
Probab=68.14 E-value=47 Score=30.14 Aligned_cols=45 Identities=20% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHhh-cCcEEEEEEeeeccchHHHHH
Q 026063 71 LDLDATFEQKNDIAKAVEEELEKAMSH-YGYEIVQTLIVDIEPDEHVKR 118 (244)
Q Consensus 71 ~tldeil~~R~~i~~~I~~~l~~~~~~-~GI~V~~V~I~~i~~p~~i~~ 118 (244)
-+-.++|++-+.|.+.+. .+-++. --++|.++.|-|++..+.+=.
T Consensus 187 ~~hk~VLEnPd~ISk~VL---~kGLDagTAFeIlSIDIADvdVG~NIGA 232 (316)
T PRK13665 187 ESHKEVLENPDSISKTVL---SKGLDAGTAFEILSIDIADVDVGKNIGA 232 (316)
T ss_pred chHHHHhcCHHHHHHHHH---hccCCcCceeEEEEEeeeccccchhhch
Confidence 345677777777776543 333332 358899999999998776543
No 62
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=67.62 E-value=69 Score=26.39 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 026063 195 MVLVTQYFDTMK 206 (244)
Q Consensus 195 ~~l~~ryleal~ 206 (244)
..+..+|++...
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 345677777654
No 63
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=66.74 E-value=18 Score=30.65 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=42.7
Q ss_pred hHHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeec
Q 026063 58 SCLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDI 110 (244)
Q Consensus 58 ~~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i 110 (244)
+.+++++=..+++.+.+++.+ +|+.|..++.+.++..+.+ | .|.+|.+++.
T Consensus 127 p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 127 PVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 357888888999999999987 6899999999999998875 3 5778887765
No 64
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=62.33 E-value=19 Score=27.30 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhch
Q 026063 119 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL 160 (244)
Q Consensus 119 ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Ae 160 (244)
.|..-+.||.+...-+..|..++...+..|..+++..+....
T Consensus 5 ~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r 46 (105)
T PF03179_consen 5 GIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFR 46 (105)
T ss_dssp -SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777777777777777777766554443
No 65
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=61.61 E-value=75 Score=24.72 Aligned_cols=72 Identities=15% Similarity=0.072 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 026063 133 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEI 208 (244)
Q Consensus 133 ~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i 208 (244)
..+++++++++...-..-.++-.++..-|+--....--++...|+.++..-+.++-+++++ ...|.-+-+.+
T Consensus 25 ~~~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp~~de~i----~tmW~TSrqqi 96 (109)
T PHA02571 25 ARNEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQPYTDELI----ETMWETSRQQI 96 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCCCcHHHH----HHHHHHHHHHH
Confidence 3446667777666666666666666666554444444567788888888888764333333 34455544433
No 66
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=58.72 E-value=1.8e+02 Score=28.06 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHh
Q 026063 175 DSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKEIG 209 (244)
Q Consensus 175 ~a~~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~ 209 (244)
.+-+++.+.+.+ ++ .+--+..+|++.+.++.
T Consensus 128 ~A~kil~~~l~d---~~-~~~~lId~~i~~l~~~~ 158 (445)
T PRK13428 128 QAGELVRNHVAD---PA-QQSATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHcCC---HH-HHHHHHHHHHHHhhccC
Confidence 344455555531 22 23345688888888875
No 67
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=58.47 E-value=36 Score=27.98 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcC--cEEEEEEeeec
Q 026063 59 CLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYG--YEIVQTLIVDI 110 (244)
Q Consensus 59 ~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~G--I~V~~V~I~~i 110 (244)
.+++.+=..++..+.+++.+ +++.+..+|.+.++..+..-+ -.|.+|.++++
T Consensus 104 ~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 104 EVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 47788888899999999987 689999999999998886532 46888888765
No 68
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=55.08 E-value=34 Score=28.35 Aligned_cols=51 Identities=6% Similarity=0.034 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 59 CLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 59 ~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
.+++.+=..+++.+.+|+.+ +++.|..++.+.++..+.+- .|.+|.++++-
T Consensus 112 ~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~FV 164 (166)
T PRK12785 112 RVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEVV 164 (166)
T ss_pred HHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEeeE
Confidence 47788888889999999987 69999999999999887752 48888887753
No 69
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=54.91 E-value=43 Score=27.70 Aligned_cols=52 Identities=8% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCHHHHHh--hHHHHHHHHHHHHHHHHhhc-C-cEEEEEEeeec
Q 026063 59 CLGLVIRASVPKLDLDATFE--QKNDIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 110 (244)
Q Consensus 59 ~v~~~lR~vig~~tldeil~--~R~~i~~~I~~~l~~~~~~~-G-I~V~~V~I~~i 110 (244)
.+++.+-..+++.+.+++-+ +++.+..++...++..++.. | -.|.+|.+++.
T Consensus 112 ~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 112 LIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 47888999999999999987 68899999988888887654 3 25788888765
No 70
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=53.21 E-value=37 Score=28.85 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 59 CLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 59 ~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
-+++.+...+++.+.+|+- ++++|..+|.+.++..+.+ =.|.+|.+++..
T Consensus 128 qIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~--GkV~~VYFTeFv 177 (181)
T PRK06654 128 RLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRN--GEIKDIAFTQID 177 (181)
T ss_pred HHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCC--CceEEEEEEEEE
Confidence 4889999999999999998 8899999999999988775 347778777764
No 71
>PRK15322 invasion protein OrgB; Provisional
Probab=52.68 E-value=1.6e+02 Score=25.63 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCcEEEecC
Q 026063 178 LAFSENVPGTSSKDVMDMVLVTQYFDTMKEIGASSKTNSVFIPH 221 (244)
Q Consensus 178 ~~~a~a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~~~ivlp~ 221 (244)
..++.++. .|+.. +.+...|+-.++... ..-.+.||.
T Consensus 83 ~lls~~Ld---~pd~L-L~~le~Wl~~l~~~~---~pL~l~lP~ 119 (210)
T PRK15322 83 ELFSAAVD---HPETL-LTVLDEWLRDFDKPE---GQLFLTLPV 119 (210)
T ss_pred HHHHHHcc---CHHHH-HHHHHHHHHhCcccc---CceeEecCh
Confidence 45666665 47764 445577888777753 334567884
No 72
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=51.21 E-value=1.7e+02 Score=26.77 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=33.8
Q ss_pred HHHHHhhcCC-CCHHHHHhhHHHHHHHHHHHHHHHHh-hcCcEEEEEEeeeccchHHHHH
Q 026063 61 GLVIRASVPK-LDLDATFEQKNDIAKAVEEELEKAMS-HYGYEIVQTLIVDIEPDEHVKR 118 (244)
Q Consensus 61 ~~~lR~vig~-~tldeil~~R~~i~~~I~~~l~~~~~-~~GI~V~~V~I~~i~~p~~i~~ 118 (244)
-+-+=+.+|+ -+-.+++.+-+.|.+.+.+ +-++ .--++|.++.|-||+..+.+-.
T Consensus 171 GEgIVttiGSa~~hk~VLEnPd~ISk~VL~---kgLDagTAFeIlSIDIaDidVG~NIGA 227 (316)
T PF12127_consen 171 GEGIVTTIGSAESHKEVLENPDSISKTVLE---KGLDAGTAFEILSIDIADIDVGENIGA 227 (316)
T ss_pred ccceeeeeccchhHHHHhcCHHHHHHHHHh---hCCCcCceeEEEEeeeeccccchhhch
Confidence 3333334443 3456777777777775543 2333 2358899999999998765543
No 73
>PRK09098 type III secretion system protein HrpB; Validated
Probab=49.41 E-value=1e+02 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhHHHhhHhhc
Q 026063 137 AEAEKILQIKRAEGEAESKYLAG 159 (244)
Q Consensus 137 Aegek~a~i~~Aeaeaea~~~~A 159 (244)
|+.+.+..+-.|+.++++.+..|
T Consensus 48 Ar~~A~~Il~~A~~~A~~I~~~A 70 (233)
T PRK09098 48 ARARAERIVAEARAQAEAILEAA 70 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 74
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=49.13 E-value=1.9e+02 Score=25.55 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063 136 KAEAEKILQIKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 136 ~Aegek~a~i~~Aeaeaea~~~~Aeae 162 (244)
+|+.+++..+.+|+.+++..+..++.+
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ 109 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQ 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544443
No 75
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=48.76 E-value=51 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhh
Q 026063 133 ANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDG 172 (244)
Q Consensus 133 ~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea 172 (244)
++..||.++...+..|..++...+..|+.+|+........
T Consensus 8 ~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~ 47 (105)
T PF03179_consen 8 QLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRA 47 (105)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777777666665444433
No 76
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=48.09 E-value=1.4e+02 Score=24.49 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=9.6
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 46 Pi~~~l~~R~~~I~~~l~~ 64 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEE 64 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666654 45544443
No 77
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=46.61 E-value=1.7e+02 Score=24.19 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=9.0
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~ 88 (244)
++..++.+|. .|...+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4566666654 3444443
No 78
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=46.22 E-value=1.6e+02 Score=23.80 Aligned_cols=15 Identities=7% Similarity=0.361 Sum_probs=7.1
Q ss_pred HHHHHhhHH-HHHHHH
Q 026063 73 LDATFEQKN-DIAKAV 87 (244)
Q Consensus 73 ldeil~~R~-~i~~~I 87 (244)
+..++.+|. .|...+
T Consensus 27 i~~~l~~R~~~I~~~l 42 (159)
T PRK09173 27 IARSLDARADRIKNEL 42 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 555556543 344333
No 79
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=45.98 E-value=2e+02 Score=24.84 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=6.6
Q ss_pred EEEecC--CCCchhH
Q 026063 216 SVFIPH--GPGAVKD 228 (244)
Q Consensus 216 ~ivlp~--~~~~~~~ 228 (244)
+.++|. +|..+.+
T Consensus 132 ~~~i~~~~~~~~~~~ 146 (207)
T PRK01005 132 TAYIGKHVSARAVNE 146 (207)
T ss_pred chhhhhcCCHHHHHH
Confidence 366664 3444444
No 80
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=45.77 E-value=99 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.017 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhHHHhhHhhchhh
Q 026063 140 EKILQIKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 140 ek~a~i~~Aeaeaea~~~~Aeae 162 (244)
..+..+..|..+++..+..|+.+
T Consensus 40 ~~~eii~eA~~eA~~ile~Ak~e 62 (103)
T PRK08404 40 IEEEIIKKAEEEAQKLIEKKKKE 62 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444443
No 81
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=45.21 E-value=1.7e+02 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=11.0
Q ss_pred CCCHHHHHhhHH-HHHHHHH
Q 026063 70 KLDLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 70 ~~tldeil~~R~-~i~~~I~ 88 (244)
-.++..++.+|. .|...+.
T Consensus 41 ~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 41 RGFLGKILEERREAILQALK 60 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 335777777664 4554444
No 82
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=45.15 E-value=1.8e+02 Score=24.23 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=8.2
Q ss_pred CHHHHHhhHH-HHHHHH
Q 026063 72 DLDATFEQKN-DIAKAV 87 (244)
Q Consensus 72 tldeil~~R~-~i~~~I 87 (244)
++..++.+|. .|...+
T Consensus 55 PI~~~l~~R~~~I~~~l 71 (181)
T PRK13454 55 RIGAVLAERQGTITNDL 71 (181)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 4556666654 344333
No 83
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.93 E-value=1.6e+02 Score=25.21 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=9.9
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 72 Pi~~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 72 PTQRFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666667654 45554443
No 84
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.80 E-value=1.7e+02 Score=23.75 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=9.3
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14471 32 PILGAVKEREDSIKNALAS 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666554 45544443
No 85
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=44.28 E-value=72 Score=27.06 Aligned_cols=25 Identities=28% Similarity=0.199 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhHh
Q 026063 133 ANEKAEAEKILQIKRAEGEAESKYL 157 (244)
Q Consensus 133 ~~~~Aegek~a~i~~Aeaeaea~~~ 157 (244)
-+..|+.+++..+..|+.+++..+.
T Consensus 35 IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 35 ILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555544444
No 86
>PRK09098 type III secretion system protein HrpB; Validated
Probab=44.16 E-value=85 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.044 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh
Q 026063 130 RLAANEKAEAEKILQIKRAEGEAESKYLAGLGI 162 (244)
Q Consensus 130 ~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae 162 (244)
.+|+.+.+++..++..+..++..+......+|+
T Consensus 50 ~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy 82 (233)
T PRK09098 50 ARAERIVAEARAQAEAILEAARREADRSARRGY 82 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445455555554454444444443444444
No 87
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=43.78 E-value=1.8e+02 Score=23.92 Aligned_cols=19 Identities=0% Similarity=0.170 Sum_probs=11.0
Q ss_pred CCHHHHHhhHH-HHHHHHHH
Q 026063 71 LDLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 71 ~tldeil~~R~-~i~~~I~~ 89 (244)
-++..++.+|. .|...+.+
T Consensus 39 kpi~~~l~~R~~~I~~~l~~ 58 (173)
T PRK13460 39 DVILKALDERASGVQNDINK 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35667777664 45555443
No 88
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=42.87 E-value=1.8e+02 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=9.2
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~ 88 (244)
++..++.+|. .|...+.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5666667654 3444443
No 89
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=41.99 E-value=2e+02 Score=23.71 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhh
Q 026063 137 AEAEKILQIKRAE 149 (244)
Q Consensus 137 Aegek~a~i~~Ae 149 (244)
|+.+++..+..|+
T Consensus 68 Ar~EA~~Ii~~A~ 80 (154)
T PRK06568 68 LETLRSQMIEESN 80 (154)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 90
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=41.95 E-value=72 Score=27.04 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=8.9
Q ss_pred ecCCCCchhHHHHHHHH
Q 026063 219 IPHGPGAVKDIASQIRE 235 (244)
Q Consensus 219 lp~~~~~~~~~~~~~~~ 235 (244)
|-..|+.+..+...+..
T Consensus 135 L~~hP~~~~~V~~~L~~ 151 (191)
T PF06188_consen 135 LRCHPDQLEEVAAWLAE 151 (191)
T ss_pred EEECHHHHHHHHHHHHh
Confidence 33446666666554443
No 91
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=40.77 E-value=2e+02 Score=23.35 Aligned_cols=18 Identities=6% Similarity=0.265 Sum_probs=9.7
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666654 45544443
No 92
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.17 E-value=2.1e+02 Score=23.52 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=9.7
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~ 88 (244)
++..++.+|. .|...+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (175)
T PRK14472 42 PILSALEEREKGIQSSID 59 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5667777664 4554444
No 93
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=39.42 E-value=1.1e+02 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Q 026063 124 NAAARLRLAANEKAEAEKILQIKRAEGEAES 154 (244)
Q Consensus 124 ~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea 154 (244)
+..+.+..+..+.+++++++..+.+++++++
T Consensus 10 I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a 40 (185)
T PRK01194 10 IEKSREEKKKEINDEYSKRIEKLEKECDSKI 40 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555444444444443333
No 94
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.39 E-value=2e+02 Score=23.17 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=4.8
Q ss_pred HHHHHhhHH
Q 026063 73 LDATFEQKN 81 (244)
Q Consensus 73 ldeil~~R~ 81 (244)
+..++..|.
T Consensus 47 i~~~l~~R~ 55 (156)
T CHL00118 47 LLKVLDERK 55 (156)
T ss_pred HHHHHHHHH
Confidence 555556554
No 95
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=39.04 E-value=2.2e+02 Score=27.42 Aligned_cols=18 Identities=6% Similarity=0.241 Sum_probs=9.8
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 25 Pi~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667654 45554443
No 96
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.96 E-value=2.5e+02 Score=24.04 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=8.7
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~ 88 (244)
.+..++.+|. .|...+.
T Consensus 77 pI~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4556666553 4444443
No 97
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=37.24 E-value=2.8e+02 Score=24.17 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhHHHhhHhhchhhHHH
Q 026063 136 KAEAEKILQIKRAEGEAESKYLAGLGIARQ 165 (244)
Q Consensus 136 ~Aegek~a~i~~Aeaeaea~~~~AeaeAea 165 (244)
+|+.+++..+.+|+.+++..+..++.+.+.
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~ 112 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQEALRR 112 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444333
No 98
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=36.56 E-value=2.5e+02 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=10.7
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
.+..++.+|. .|...+.+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677788664 45554443
No 99
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=35.33 E-value=2.4e+02 Score=25.06 Aligned_cols=22 Identities=23% Similarity=0.065 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHh
Q 026063 133 ANEKAEAEKILQIKRAEGEAES 154 (244)
Q Consensus 133 ~~~~Aegek~a~i~~Aeaeaea 154 (244)
.+.+|+.+.+..+..|+.+++.
T Consensus 93 ~l~~a~~q~e~~~~ea~~e~e~ 114 (281)
T PRK06669 93 IIEKLQMQIEREQEEWEEELER 114 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 100
>PRK15322 invasion protein OrgB; Provisional
Probab=32.26 E-value=1.7e+02 Score=25.36 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=6.5
Q ss_pred HHHHHhhhHHHhhHh
Q 026063 143 LQIKRAEGEAESKYL 157 (244)
Q Consensus 143 a~i~~Aeaeaea~~~ 157 (244)
..+..|+.|+++...
T Consensus 27 ~ii~qA~~eaE~ir~ 41 (210)
T PRK15322 27 RILRQAEEEAETLRM 41 (210)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 101
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=30.85 E-value=64 Score=25.50 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=46.9
Q ss_pred cceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHH-HHHHHHH-----HHHH--HHhhcCcEEEEEEeeeccch
Q 026063 43 SKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKND-IAKAVEE-----ELEK--AMSHYGYEIVQTLIVDIEPD 113 (244)
Q Consensus 43 ~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~-i~~~I~~-----~l~~--~~~~~GI~V~~V~I~~i~~p 113 (244)
...|+|.|.---.- ..+.+.+|..+++.++++.-.+-.. |...|.- .... .+..-|+.|.+|.|+++.|-
T Consensus 40 ~k~F~VpDFVGd~C-k~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 40 AKLFSVPDFVGDAC-KAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDENGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp HHTTSSTTHHHHHH-HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred HHhcCCcchHHHHH-HHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCCCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 46788877666666 3688999999999999999764332 2222211 1111 12446999999999999873
No 102
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=30.60 E-value=2.8e+02 Score=22.09 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=9.1
Q ss_pred CHHHHHhhHH-HHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVE 88 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~ 88 (244)
++..++.+|. .|...+.
T Consensus 31 Pi~~~l~~R~~~I~~~l~ 48 (141)
T PRK08476 31 PLLKFMDNRNASIKNDLE 48 (141)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4556667664 3444443
No 103
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=29.90 E-value=2.8e+02 Score=21.85 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=3.8
Q ss_pred HHHHHhhH
Q 026063 73 LDATFEQK 80 (244)
Q Consensus 73 ldeil~~R 80 (244)
+..++.+|
T Consensus 20 i~~~l~~R 27 (147)
T TIGR01144 20 LAKAIETR 27 (147)
T ss_pred HHHHHHHH
Confidence 44445544
No 104
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=29.74 E-value=2.3e+02 Score=24.48 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=37.8
Q ss_pred ccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh--HHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccc
Q 026063 48 LMSLQEILTTSCLGLVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEP 112 (244)
Q Consensus 48 v~~~~~~i~~~~v~~~lR~vig~~tldeil~~--R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~ 112 (244)
....|..-++....+.+....+.+++++++.. -+.|+.+|........ .+.+|+|+.+.+
T Consensus 122 a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~Iy-----Plr~veIrKvkv 183 (203)
T PRK04057 122 ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIY-----PLRRVEIRKSKV 183 (203)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhcc-----CcceEEEEEEEE
Confidence 33445555556788899999999999999853 3556665555555442 233555554443
No 105
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=28.96 E-value=1.6e+02 Score=22.90 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=11.1
Q ss_pred hHHHhhHhhchhhHHHHHHHhh
Q 026063 150 GEAESKYLAGLGIARQRQAIVD 171 (244)
Q Consensus 150 aeaea~~~~AeaeAea~~~~Ae 171 (244)
++.++..+.++|++++....+.
T Consensus 67 ~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 67 AEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555444
No 106
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=4e+02 Score=26.16 Aligned_cols=11 Identities=0% Similarity=0.250 Sum_probs=7.3
Q ss_pred HHHHHHHHHHh
Q 026063 199 TQYFDTMKEIG 209 (244)
Q Consensus 199 ~ryleal~~i~ 209 (244)
.+||+++...+
T Consensus 254 ekwl~aInTtf 264 (630)
T KOG0742|consen 254 EKWLEAINTTF 264 (630)
T ss_pred HHHHHHHhhhH
Confidence 56777776654
No 107
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=28.74 E-value=3.4e+02 Score=22.49 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=10.9
Q ss_pred CCHHHHHhhHH-HHHHHHHH
Q 026063 71 LDLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 71 ~tldeil~~R~-~i~~~I~~ 89 (244)
-++..++.+|. .|...+.+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46777777654 45554443
No 108
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=28.69 E-value=4e+02 Score=23.24 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=10.2
Q ss_pred CHHHHHhhHH-HHHHHHHH
Q 026063 72 DLDATFEQKN-DIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R~-~i~~~I~~ 89 (244)
++..++.+|. .|...+.+
T Consensus 29 Pi~~~l~~R~~~I~~~l~~ 47 (246)
T TIGR03321 29 PILDAMDAREKKIAGELAD 47 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666677654 45555443
No 109
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=27.61 E-value=1.9e+02 Score=26.42 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=50.5
Q ss_pred HHHHHhhcCcEE-EEEEeeeccchH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhh-HHHH
Q 026063 91 LEKAMSHYGYEI-VQTLIVDIEPDE-HVKRAMNEINAAARL-RLAANEKAEAEKILQIKRAEGEAESKYLAGLGI-ARQR 166 (244)
Q Consensus 91 l~~~~~~~GI~V-~~V~I~~i~~p~-~i~~ai~~~~~Aer~-~~A~~~~Aegek~a~i~~Aeaeaea~~~~Aeae-Aea~ 166 (244)
+.+..-..|+.. +.++|.+|+.-+ ++=+.+..+.++.|. ..-++.+|++|.+ +|.+-+..+..+|+.+ .++.
T Consensus 194 ISk~VL~kgLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeR----RA~AvA~EQEm~A~vqe~rAk 269 (316)
T PF12127_consen 194 ISKTVLEKGLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEER----RAMAVAREQEMKAKVQEMRAK 269 (316)
T ss_pred HHHHHHhhCCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhH
Confidence 333334458887 788999999976 777888887766542 2222333333322 2333333333333322 2333
Q ss_pred HHHhhhhhHHHHHHHhcCCCCCchhHHHHH
Q 026063 167 QAIVDGLRDSVLAFSENVPGTSSKDVMDMV 196 (244)
Q Consensus 167 ~~~Aea~a~a~~~~a~a~~~~~~~~~~~~~ 196 (244)
...||+ +-=..+++++.. ++--.++||
T Consensus 270 vVeAea--evP~A~aeAfr~-G~lGvmDYy 296 (316)
T PF12127_consen 270 VVEAEA--EVPLAMAEAFRS-GNLGVMDYY 296 (316)
T ss_pred heehhh--hchHHHHHHHHc-CCCcchhhh
Confidence 333333 333445566543 444556655
No 110
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=26.32 E-value=3.5e+02 Score=21.80 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=2.9
Q ss_pred HhhhHHHh
Q 026063 147 RAEGEAES 154 (244)
Q Consensus 147 ~Aeaeaea 154 (244)
.|+.++..
T Consensus 85 ~A~~ea~~ 92 (156)
T CHL00118 85 KARKEAQL 92 (156)
T ss_pred HHHHHHHH
Confidence 33333333
No 111
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=26.05 E-value=2.4e+02 Score=24.03 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred ccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh--HHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 48 LMSLQEILTTSCLGLVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 48 v~~~~~~i~~~~v~~~lR~vig~~tldeil~~--R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
....|..-++....+.+...++..++++++.. -+.|+.+|....... +.+.+|+|+.+.
T Consensus 128 a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I-----yPl~~v~IrKvK 188 (194)
T PF01015_consen 128 AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI-----YPLRNVEIRKVK 188 (194)
T ss_dssp -TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT-------EEEEEEEEEE
T ss_pred ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc-----cccceEEEEEEE
Confidence 33445555667789999999999999999853 445555554444433 234456665543
No 112
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=26.02 E-value=2.9e+02 Score=21.99 Aligned_cols=7 Identities=14% Similarity=0.700 Sum_probs=3.4
Q ss_pred CCchhHH
Q 026063 223 PGAVKDI 229 (244)
Q Consensus 223 ~~~~~~~ 229 (244)
|+.+..+
T Consensus 122 P~d~~~l 128 (166)
T TIGR02499 122 PEQLDEV 128 (166)
T ss_pred HHHHHHH
Confidence 5554433
No 113
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=25.79 E-value=3.7e+02 Score=21.92 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=9.4
Q ss_pred CHHHHHhhH-HHHHHHHHH
Q 026063 72 DLDATFEQK-NDIAKAVEE 89 (244)
Q Consensus 72 tldeil~~R-~~i~~~I~~ 89 (244)
++..++..| +.|...+.+
T Consensus 34 pi~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 34 ALAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 355666655 345555543
No 114
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=24.27 E-value=4.5e+02 Score=22.37 Aligned_cols=7 Identities=14% Similarity=0.026 Sum_probs=3.0
Q ss_pred cEEEecC
Q 026063 215 NSVFIPH 221 (244)
Q Consensus 215 ~~ivlp~ 221 (244)
..+|.|.
T Consensus 121 ~~iV~~~ 127 (194)
T COG1390 121 ELVVYLN 127 (194)
T ss_pred CeEEEeC
Confidence 3344443
No 115
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=23.03 E-value=3e+02 Score=19.86 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026063 136 KAEAEKILQIK 146 (244)
Q Consensus 136 ~Aegek~a~i~ 146 (244)
.|+.++...+.
T Consensus 17 ~A~~ea~~Ii~ 27 (85)
T TIGR02926 17 EAEEERKQRIA 27 (85)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=22.21 E-value=3.7e+02 Score=20.91 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHh
Q 026063 120 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYL 157 (244)
Q Consensus 120 i~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~ 157 (244)
|.+-..||.+..-.+..|.-.+..+...|.-||+..+.
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie 45 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIE 45 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777776667777877788888888777766553
No 117
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=20.84 E-value=94 Score=25.26 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCcEEEEEEeeeccchH
Q 026063 84 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDE 114 (244)
Q Consensus 84 ~~~I~~~l~~~~~~~GI~V~~V~I~~i~~p~ 114 (244)
.-++++.+.+.+..+|++|.|+--.++++|+
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 4467888888999999999998765667776
No 118
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=20.45 E-value=1.6e+02 Score=21.53 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHh-hHHHHHHHHHHHHHHHHhhcCcEEEEEE
Q 026063 73 LDATFE-QKNDIAKAVEEELEKAMSHYGYEIVQTL 106 (244)
Q Consensus 73 ldeil~-~R~~i~~~I~~~l~~~~~~~GI~V~~V~ 106 (244)
+.+.+. .|..|.+.| +.+.+||+.|+++.
T Consensus 25 La~~LgiSRtaVwK~I-----q~Lr~~G~~I~s~~ 54 (79)
T COG1654 25 LAEELGISRTAVWKHI-----QQLREEGVDIESVR 54 (79)
T ss_pred HHHHHCccHHHHHHHH-----HHHHHhCCceEecC
Confidence 344445 677777655 35678999999885
No 119
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.39 E-value=4.4e+02 Score=20.85 Aligned_cols=63 Identities=16% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHH
Q 026063 114 EHVKRAMNE-INAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDS 176 (244)
Q Consensus 114 ~~i~~ai~~-~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a 176 (244)
.++...+.. +.++..-.......|+..++..+..|+.+++..+..|+.+.+.....+..+-..
T Consensus 59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~ 122 (156)
T PRK05759 59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRK 122 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!