Query 026063
Match_columns 244
No_of_seqs 212 out of 1443
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 99.9 2.8E-25 9.7E-30 186.6 13.1 154 23-214 27-180 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.8 3.2E-21 1.1E-25 153.8 7.6 93 33-126 41-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.7 2.3E-17 7.9E-22 132.9 2.9 95 33-127 37-139 (143)
4 2rpb_A Hypothetical membrane p 99.6 5.7E-16 1.9E-20 119.3 6.4 91 23-115 23-113 (113)
5 2zuo_A MVP, major vault protei 97.2 0.0054 1.8E-07 61.0 13.8 70 44-114 560-647 (861)
6 2zuo_A MVP, major vault protei 75.7 15 0.0005 36.8 10.0 27 95-121 633-659 (861)
7 3v6i_A V-type ATP synthase sub 67.4 20 0.00068 28.7 7.6 16 213-230 116-131 (187)
8 3v6i_B V-type ATP synthase, su 67.4 25 0.00085 26.0 7.3 25 132-156 20-44 (105)
9 4efa_G V-type proton ATPase su 60.3 24 0.00082 26.7 6.4 44 115-158 7-50 (119)
10 3v6i_A V-type ATP synthase sub 56.9 57 0.0019 25.9 8.6 29 123-151 6-34 (187)
11 3bk6_A PH stomatin; archaea, t 56.6 9.9 0.00034 30.4 3.9 13 44-56 37-49 (188)
12 3v6i_B V-type ATP synthase, su 49.9 33 0.0011 25.4 5.3 35 119-153 17-52 (105)
13 2k6i_A Uncharacterized protein 49.2 19 0.00065 23.7 3.5 22 125-146 23-44 (56)
14 2acm_B Mucin-1; auto-catalytic 33.7 65 0.0022 21.1 4.2 25 91-115 28-52 (55)
15 4efa_G V-type proton ATPase su 29.5 1.4E+02 0.0047 22.4 6.2 37 131-167 12-48 (119)
16 4efa_E V-type proton ATPase su 28.4 2.4E+02 0.0083 23.0 8.5 29 113-141 10-41 (233)
17 3j20_A 30S ribosomal protein S 24.4 2.9E+02 0.0099 22.5 8.4 59 48-111 129-189 (198)
18 4efa_E V-type proton ATPase su 21.5 1.5E+02 0.005 24.3 5.5 36 125-160 14-49 (233)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.93 E-value=2.8e-25 Score=186.56 Aligned_cols=154 Identities=16% Similarity=0.212 Sum_probs=118.4
Q ss_pred ccccccccccceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEE
Q 026063 23 EPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEI 102 (244)
Q Consensus 23 ~~~~~~l~~~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V 102 (244)
+.+.++++. ++.|+|.||.+++|.+.|+...+. +.+++++|+++|++++++++++|++|+..|++.+++.+++|||.|
T Consensus 27 D~~~V~v~~-~v~yrI~dp~~~~~~v~~~~~~i~-~~~~~~lR~vig~~~l~ell~~R~~i~~~i~~~l~~~~~~~GI~v 104 (188)
T 3bk6_A 27 DNVPVRVNA-VVYFRVVDPVKAVTQVKNYIMATS-QISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKV 104 (188)
T ss_dssp TSCEEEEEE-EEEEEESCHHHHHHSSSCHHHHHH-HHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred CCCEEEEEE-EEEEEECCHHHHHHHhcCHHHHHH-HHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhcCeEE
Confidence 333344443 358999999999999999999887 799999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHHHHhhhhhHHHHHHHh
Q 026063 103 VQTLIVDIEPDEHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSE 182 (244)
Q Consensus 103 ~~V~I~~i~~p~~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~~~Aea~a~a~~~~a~ 182 (244)
.+|+|++|.||+++.++|+++++|||+++|.+.+|||++++....++ +.+.++.
T Consensus 105 ~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~--------------------------a~~~~~~ 158 (188)
T 3bk6_A 105 TAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLRE--------------------------AAEIISE 158 (188)
T ss_dssp EEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHH
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------------------HHHHHHh
Confidence 99999999999999999999999999888777777776664333222 1223332
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHhcCCCC
Q 026063 183 NVPGTSSKDVMDMVLVTQYFDTMKEIGASSKT 214 (244)
Q Consensus 183 a~~~~~~~~~~~~~l~~ryleal~~i~~~~~~ 214 (244)
+|.++ .+|||++++++++++++
T Consensus 159 ------~~~~l----~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 159 ------HPMAL----QLRTLQTISDVAGDKSN 180 (188)
T ss_dssp ------CTTHH----HHHHTTC----------
T ss_pred ------CHHHH----HHHHHHHHHHHhcCCCC
Confidence 24543 68899999999854443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.84 E-value=3.2e-21 Score=153.81 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=79.5
Q ss_pred ceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEEEEeeeccc
Q 026063 33 FISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQTLIVDIEP 112 (244)
Q Consensus 33 ~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~~ 112 (244)
++.|+|.||.+++|+|.|++.++. .+++++||+++|++++++++++|++|+..+++.+++.+++|||+|.+|+|++++|
T Consensus 41 ~v~yrI~Dp~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~ 119 (133)
T 4fvg_A 41 VVYYRVQNATLAVANITNADSATR-LLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKL 119 (133)
T ss_dssp EEEEEESCHHHHHHSSSCHHHHHH-HHHHHHHHHHHHTSCHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEC
T ss_pred EEEEEEeehHHhHhhhhhHHHHHH-HHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCC
Confidence 557899999999999999999998 7999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 026063 113 DEHVKRAMNEINAA 126 (244)
Q Consensus 113 p~~i~~ai~~~~~A 126 (244)
|+++++||+++|+|
T Consensus 120 P~~v~~am~~~~~A 133 (133)
T 4fvg_A 120 PVQLQRAMAAEAEA 133 (133)
T ss_dssp CCC-----------
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999988775
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.66 E-value=2.3e-17 Score=132.93 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=81.8
Q ss_pred ceEEEEe-ecccceeeccch----HH---HHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEEEE
Q 026063 33 FISSAIL-DRRSKRMSLMSL----QE---ILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEIVQ 104 (244)
Q Consensus 33 ~~~~~i~-d~~~~~~~v~~~----~~---~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V~~ 104 (244)
++.|+|. ||.++++.++++ .. .+..+.++++||+++|+++++|++++|++|+..|++.+++.+++|||+|.+
T Consensus 37 vv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~ 116 (143)
T 1win_A 37 VAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILS 116 (143)
T ss_dssp EEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578998 577777766552 12 223367899999999999999999999999999999999999999999999
Q ss_pred EEeeeccchHHHHHHHHHHHHHH
Q 026063 105 TLIVDIEPDEHVKRAMNEINAAA 127 (244)
Q Consensus 105 V~I~~i~~p~~i~~ai~~~~~Ae 127 (244)
|+|++|++|+++.+||+++++||
T Consensus 117 v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 117 FTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp EECCCEECTTCHHHHHCCCCCCC
T ss_pred EEEEeecChHHHHHHHHHHHhhc
Confidence 99999999999999998877665
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.61 E-value=5.7e-16 Score=119.25 Aligned_cols=91 Identities=18% Similarity=0.292 Sum_probs=81.8
Q ss_pred ccccccccccceEEEEeecccceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHHHHHHHHHHHHHHhhcCcEE
Q 026063 23 EPWQRRLQMPFISSAILDRRSKRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDIAKAVEEELEKAMSHYGYEI 102 (244)
Q Consensus 23 ~~~~~~l~~~~~~~~i~d~~~~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i~~~I~~~l~~~~~~~GI~V 102 (244)
+...++++. ++.|+|.||.+++|++.|+...+. +.+++++|+++|++++++++++|++|+..+++.+++.+++|||+|
T Consensus 23 D~~~v~v~~-~v~~rI~dp~~~~~~v~~~~~~l~-~~~~~~lR~vig~~~l~ei~~~R~~i~~~i~~~l~~~~~~~Gi~v 100 (113)
T 2rpb_A 23 DNVVVTVDA-VVYYQVIDPVKAVYNVSDFLMAIV-KLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKI 100 (113)
T ss_dssp TSCEEEECE-EEEEEESCTTTCTTTTTHHHHHHH-HHHHHHHHHHHTSCCTTHHHHCHHHHHHHHHHHHHHHHGGGTEEC
T ss_pred CCCEEEEEE-EEEEEECCHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcCcHHHHHhCHHHHHHHHHHHHHHHHHhcCeEE
Confidence 333334443 468999999999999999998877 799999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccchHH
Q 026063 103 VQTLIVDIEPDEH 115 (244)
Q Consensus 103 ~~V~I~~i~~p~~ 115 (244)
.+|+|+++.||++
T Consensus 101 ~~v~I~~i~~p~e 113 (113)
T 2rpb_A 101 TRVEIQRIDPPKD 113 (113)
T ss_dssp CCEEECCCBCCCC
T ss_pred EEEEEEEecCCCC
Confidence 9999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=97.16 E-value=0.0054 Score=60.96 Aligned_cols=70 Identities=16% Similarity=0.165 Sum_probs=44.7
Q ss_pred ceeeccchHHHHHhhHHHHHHHhhcCCCCHHHHHhhHHHH-HHHHHHHHH-----------------HHHhhcCcEEEEE
Q 026063 44 KRMSLMSLQEILTTSCLGLVIRASVPKLDLDATFEQKNDI-AKAVEEELE-----------------KAMSHYGYEIVQT 105 (244)
Q Consensus 44 ~~~~v~~~~~~i~~~~v~~~lR~vig~~tldeil~~R~~i-~~~I~~~l~-----------------~~~~~~GI~V~~V 105 (244)
..|+|.|.---.- ..+.+.+|..+++.++|+.-.+-..| ...+.-.=. -.+...|+.|.+|
T Consensus 560 k~Fsv~DFvGd~C-k~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~lvitsV 638 (861)
T 2zuo_A 560 KLFSVPDFVGDAC-KAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSV 638 (861)
T ss_dssp GGGSSSSHHHHHH-HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCEEEEEE
T ss_pred hhccCCchHHHHH-HHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCeEEEEE
Confidence 4555555433344 25788999999999999997643333 222211000 0144569999999
Q ss_pred EeeeccchH
Q 026063 106 LIVDIEPDE 114 (244)
Q Consensus 106 ~I~~i~~p~ 114 (244)
.|+++.|-+
T Consensus 639 DvqsvEpvD 647 (861)
T 2zuo_A 639 DVQSVEPVD 647 (861)
T ss_dssp EEEEEEESS
T ss_pred eeeeecccC
Confidence 999999854
No 6
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=75.67 E-value=15 Score=36.83 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=16.1
Q ss_pred HhhcCcEEEEEEeeeccchHHHHHHHH
Q 026063 95 MSHYGYEIVQTLIVDIEPDEHVKRAMN 121 (244)
Q Consensus 95 ~~~~GI~V~~V~I~~i~~p~~i~~ai~ 121 (244)
+-=..|.|.+|+..|-..-+.+++++.
T Consensus 633 lvitsVDvqsvEpvDqrtrd~LqkSVq 659 (861)
T 2zuo_A 633 LVVSSVDVQSVEPVDQRTRDALQRSVQ 659 (861)
T ss_dssp EEEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccCHHHHHHHHHHHH
Confidence 334456666677666666665555553
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=67.45 E-value=20 Score=28.72 Aligned_cols=16 Identities=6% Similarity=0.289 Sum_probs=7.6
Q ss_pred CCcEEEecCCCCchhHHH
Q 026063 213 KTNSVFIPHGPGAVKDIA 230 (244)
Q Consensus 213 ~~~~ivlp~~~~~~~~~~ 230 (244)
+..++++ +|.++.-+-
T Consensus 116 ~~~~vv~--~~~D~~~v~ 131 (187)
T 3v6i_A 116 GAKALVA--NPEDLPHLE 131 (187)
T ss_dssp TCCEEEE--CTTTHHHHH
T ss_pred CCCeEEE--CHHHHHHHH
Confidence 3445543 466544443
No 8
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=67.37 E-value=25 Score=25.99 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHhhH
Q 026063 132 AANEKAEAEKILQIKRAEGEAESKY 156 (244)
Q Consensus 132 A~~~~Aegek~a~i~~Aeaeaea~~ 156 (244)
+++..|..+....+..|++++.++.
T Consensus 20 ~~lE~Ar~eA~~~v~~AEAeA~ril 44 (105)
T 3v6i_B 20 ERLEAAKKEAEERVKRAEAEAKALL 44 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 9
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=60.32 E-value=24 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhh
Q 026063 115 HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAESKYLA 158 (244)
Q Consensus 115 ~i~~ai~~~~~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~ 158 (244)
+-...|..-+.||++....+..|..+|..++..|..+|++.+..
T Consensus 7 Sqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~ 50 (119)
T 4efa_G 7 SQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDS 50 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456777788888888788888888888888888887776543
No 10
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=56.91 E-value=57 Score=25.93 Aligned_cols=29 Identities=21% Similarity=0.028 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 026063 123 INAAARLRLAANEKAEAEKILQIKRAEGE 151 (244)
Q Consensus 123 ~~~Aer~~~A~~~~Aegek~a~i~~Aeae 151 (244)
.+..+-+.++..+.+++++++..+.++++
T Consensus 6 ~l~~eA~~~a~~I~~eA~~~a~~I~~eA~ 34 (187)
T 3v6i_A 6 ILSQEVEAEIQALLQEAEAKAEAVKREAE 34 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433333333
No 11
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=56.64 E-value=9.9 Score=30.43 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=9.9
Q ss_pred ceeeccchHHHHH
Q 026063 44 KRMSLMSLQEILT 56 (244)
Q Consensus 44 ~~~~v~~~~~~i~ 56 (244)
.+|+|.|+...+.
T Consensus 37 v~yrI~dp~~~~~ 49 (188)
T 3bk6_A 37 VYFRVVDPVKAVT 49 (188)
T ss_dssp EEEEESCHHHHHH
T ss_pred EEEEECCHHHHHH
Confidence 7899999766553
No 12
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=49.93 E-value=33 Score=25.36 Aligned_cols=35 Identities=29% Similarity=0.213 Sum_probs=19.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 026063 119 AMNEIN-AAARLRLAANEKAEAEKILQIKRAEGEAE 153 (244)
Q Consensus 119 ai~~~~-~Aer~~~A~~~~Aegek~a~i~~Aeaeae 153 (244)
++..++ .|.++.++.+..||++.....-.|+..+.
T Consensus 17 ~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 17 QLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433 34555666777777776655555544433
No 13
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=49.18 E-value=19 Score=23.73 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026063 125 AAARLRLAANEKAEAEKILQIK 146 (244)
Q Consensus 125 ~Aer~~~A~~~~Aegek~a~i~ 146 (244)
.||++....+.+|+.++...+.
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii~ 44 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIKA 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 14
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=33.69 E-value=65 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=16.8
Q ss_pred HHHHHhhcCcEEEEEEeeeccchHH
Q 026063 91 LEKAMSHYGYEIVQTLIVDIEPDEH 115 (244)
Q Consensus 91 l~~~~~~~GI~V~~V~I~~i~~p~~ 115 (244)
..+....|.+.|.+|.++|+.+|-+
T Consensus 28 ~~~a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 28 KTEAASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHHHHCCCEEEEEEECC-----
T ss_pred hhhccccccceecceeEEeccCCCc
Confidence 3445668999999999999999854
No 15
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=29.45 E-value=1.4e+02 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.057 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhHhhchhhHHHHH
Q 026063 131 LAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQ 167 (244)
Q Consensus 131 ~A~~~~Aegek~a~i~~Aeaeaea~~~~AeaeAea~~ 167 (244)
..+...||.++...+..|...+....-+|+.+|+.-.
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EI 48 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEI 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777776666666655543
No 16
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=28.38 E-value=2.4e+02 Score=22.97 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=12.1
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 026063 113 DEHVKRAMNE---INAAARLRLAANEKAEAEK 141 (244)
Q Consensus 113 p~~i~~ai~~---~~~Aer~~~A~~~~Aegek 141 (244)
|+++..-+.+ -+..|.+..|..+.++++.
T Consensus 10 ~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAee 41 (233)
T 4efa_E 10 PNQVNDELNKMQAFIRKEAEEKAKEIQLKADQ 41 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555433 2223333444444444433
No 17
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.39 E-value=2.9e+02 Score=22.53 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=40.3
Q ss_pred ccchHHHHHhhHHHHHHHhhcCCCCHHHHHhh--HHHHHHHHHHHHHHHHhhcCcEEEEEEeeecc
Q 026063 48 LMSLQEILTTSCLGLVIRASVPKLDLDATFEQ--KNDIAKAVEEELEKAMSHYGYEIVQTLIVDIE 111 (244)
Q Consensus 48 v~~~~~~i~~~~v~~~lR~vig~~tldeil~~--R~~i~~~I~~~l~~~~~~~GI~V~~V~I~~i~ 111 (244)
....|..-++....+.+...++..++++++.. -+.|+.+|....+.. +.+.+|+|+.+.
T Consensus 129 a~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I-----yPl~~V~IrKvK 189 (198)
T 3j20_A 129 IQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI-----YPLRKAEIRKIK 189 (198)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH-----SCEEEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc-----cccceEEEEEEE
Confidence 34445555556788899999999999999874 367777777766655 234456665544
No 18
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=21.49 E-value=1.5e+02 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHhhch
Q 026063 125 AAARLRLAANEKAEAEKILQIKRAEGEAESKYLAGL 160 (244)
Q Consensus 125 ~Aer~~~A~~~~Aegek~a~i~~Aeaeaea~~~~Ae 160 (244)
..+-++-...++.|++..+..+.++|+.++.+.+++
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~ 49 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTN 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344456666666666666666665554443
Done!