Query 026064
Match_columns 244
No_of_seqs 134 out of 1093
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 1.3E-62 2.8E-67 414.7 29.9 224 9-237 1-226 (227)
2 PRK03996 proteasome subunit al 100.0 5.8E-62 1.3E-66 414.2 30.7 236 1-240 1-239 (241)
3 PTZ00246 proteasome subunit al 100.0 5.8E-62 1.3E-66 416.9 30.5 233 8-243 4-244 (253)
4 KOG0182 20S proteasome, regula 100.0 2E-61 4.4E-66 385.1 25.0 244 1-244 1-246 (246)
5 cd03754 proteasome_alpha_type_ 100.0 8E-60 1.7E-64 394.5 26.7 211 8-218 1-215 (215)
6 TIGR03633 arc_protsome_A prote 100.0 1.3E-59 2.8E-64 395.8 27.7 221 7-232 1-224 (224)
7 cd03751 proteasome_alpha_type_ 100.0 2.9E-59 6.3E-64 390.1 26.7 208 7-218 2-212 (212)
8 KOG0176 20S proteasome, regula 100.0 6.6E-60 1.4E-64 372.8 20.4 229 6-239 5-240 (241)
9 cd03752 proteasome_alpha_type_ 100.0 7.9E-59 1.7E-63 388.2 27.2 209 7-218 1-213 (213)
10 COG0638 PRE1 20S proteasome, a 100.0 2.5E-58 5.3E-63 389.8 29.5 231 7-243 1-235 (236)
11 cd03755 proteasome_alpha_type_ 100.0 9.4E-59 2E-63 386.1 26.5 205 9-218 1-207 (207)
12 cd03749 proteasome_alpha_type_ 100.0 1.8E-58 3.8E-63 385.4 26.9 207 9-219 1-211 (211)
13 KOG0183 20S proteasome, regula 100.0 2.8E-59 6.1E-64 373.4 19.3 233 6-242 1-235 (249)
14 cd03756 proteasome_alpha_arche 100.0 7.4E-58 1.6E-62 381.8 27.4 208 8-219 1-210 (211)
15 cd01911 proteasome_alpha prote 100.0 1.2E-56 2.7E-61 373.9 25.9 207 9-218 1-209 (209)
16 cd03753 proteasome_alpha_type_ 100.0 2.3E-56 5E-61 373.3 26.0 206 9-218 1-213 (213)
17 KOG0181 20S proteasome, regula 100.0 2.2E-57 4.9E-62 357.7 18.4 227 8-240 5-233 (233)
18 KOG0184 20S proteasome, regula 100.0 8.6E-57 1.9E-61 360.9 22.1 232 6-241 5-239 (254)
19 KOG0178 20S proteasome, regula 100.0 1.8E-55 4E-60 350.7 23.2 234 8-243 4-243 (249)
20 KOG0863 20S proteasome, regula 100.0 7E-54 1.5E-58 345.8 23.3 228 8-240 5-236 (264)
21 TIGR03690 20S_bact_beta protea 100.0 1.4E-46 2.9E-51 315.4 25.3 202 36-242 2-216 (219)
22 TIGR03691 20S_bact_alpha prote 100.0 2.1E-46 4.6E-51 315.1 25.8 212 17-237 8-228 (228)
23 cd03760 proteasome_beta_type_4 100.0 8.7E-46 1.9E-50 305.9 23.6 189 35-227 1-194 (197)
24 PTZ00488 Proteasome subunit be 100.0 2E-45 4.3E-50 312.7 25.5 201 31-243 35-241 (247)
25 cd03758 proteasome_beta_type_2 100.0 1.8E-45 4E-50 303.0 24.0 185 37-227 2-190 (193)
26 cd03759 proteasome_beta_type_3 100.0 5.5E-45 1.2E-49 300.7 23.7 186 36-227 3-193 (195)
27 cd03761 proteasome_beta_type_5 100.0 1.6E-44 3.6E-49 296.2 23.7 183 37-228 1-187 (188)
28 cd03757 proteasome_beta_type_1 100.0 3.2E-44 6.9E-49 299.7 23.3 185 35-223 7-202 (212)
29 TIGR03634 arc_protsome_B prote 100.0 1.3E-43 2.8E-48 290.2 23.5 180 36-222 1-184 (185)
30 cd03765 proteasome_beta_bacter 100.0 5.2E-43 1.1E-47 295.1 23.8 184 37-223 1-202 (236)
31 cd03764 proteasome_beta_archea 100.0 9.5E-43 2.1E-47 285.8 24.1 184 37-229 1-188 (188)
32 cd03762 proteasome_beta_type_6 100.0 1E-42 2.2E-47 285.6 23.7 180 37-223 1-184 (188)
33 cd03763 proteasome_beta_type_7 100.0 1.6E-42 3.5E-47 284.7 23.7 182 37-228 1-186 (189)
34 PF00227 Proteasome: Proteasom 100.0 4.3E-42 9.4E-47 281.7 23.1 184 32-218 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 4.8E-41 1E-45 275.7 22.6 180 37-222 1-184 (189)
36 cd01906 proteasome_protease_Hs 100.0 1.9E-40 4E-45 270.3 23.6 178 37-218 1-182 (182)
37 KOG0175 20S proteasome, regula 100.0 7.5E-39 1.6E-43 262.4 16.0 198 35-241 70-271 (285)
38 KOG0179 20S proteasome, regula 100.0 6.9E-37 1.5E-41 244.1 19.0 190 35-228 28-230 (235)
39 KOG0177 20S proteasome, regula 100.0 4.9E-37 1.1E-41 241.6 17.0 186 38-229 3-192 (200)
40 KOG0173 20S proteasome, regula 100.0 8.1E-35 1.8E-39 238.2 16.6 183 35-225 36-222 (271)
41 KOG0174 20S proteasome, regula 100.0 2.4E-34 5.2E-39 227.1 14.9 199 32-238 16-218 (224)
42 KOG0185 20S proteasome, regula 100.0 1.2E-32 2.5E-37 223.4 15.9 215 12-233 12-240 (256)
43 KOG0180 20S proteasome, regula 100.0 4.4E-32 9.6E-37 210.5 18.0 182 36-223 8-194 (204)
44 PRK05456 ATP-dependent proteas 100.0 3.4E-31 7.4E-36 213.2 18.8 163 36-217 1-171 (172)
45 cd01913 protease_HslV Protease 100.0 2.8E-30 6E-35 206.6 18.9 161 37-217 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.3E-29 2.8E-34 202.7 18.2 162 37-217 1-170 (171)
47 cd01901 Ntn_hydrolase The Ntn 100.0 9.2E-29 2E-33 196.0 21.5 159 37-201 1-163 (164)
48 PF10584 Proteasome_A_N: Prote 99.6 8.2E-16 1.8E-20 80.9 2.4 23 9-31 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.5 1.3E-12 2.8E-17 101.3 12.3 166 35-218 3-175 (178)
50 COG3484 Predicted proteasome-t 99.3 4.5E-11 9.7E-16 96.1 11.7 183 37-222 2-202 (255)
51 PF09894 DUF2121: Uncharacteri 94.2 2.6 5.7E-05 34.4 16.9 152 37-222 2-181 (194)
52 COG4079 Uncharacterized protei 90.8 9.4 0.0002 32.4 14.3 170 37-236 2-196 (293)
53 KOG3361 Iron binding protein i 78.6 3.9 8.5E-05 31.3 4.2 44 150-195 71-114 (157)
54 smart00481 POLIIIAc DNA polyme 65.8 7.7 0.00017 25.5 2.9 32 14-46 6-38 (67)
55 PRK08868 flagellar protein Fla 57.0 63 0.0014 25.3 6.9 33 210-242 99-132 (144)
56 PF03646 FlaG: FlaG protein; 54.2 40 0.00087 24.5 5.3 33 210-242 65-98 (107)
57 PF00178 Ets: Ets-domain; Int 52.8 35 0.00076 24.1 4.5 28 215-242 21-48 (85)
58 PRK07738 flagellar protein Fla 49.8 96 0.0021 23.3 6.7 33 210-242 74-107 (117)
59 smart00413 ETS erythroblast tr 46.6 36 0.00077 24.2 3.7 28 214-241 20-47 (87)
60 PF07499 RuvA_C: RuvA, C-termi 45.7 15 0.00031 22.7 1.5 34 165-199 12-45 (47)
61 PF14804 Jag_N: Jag N-terminus 44.6 37 0.0008 21.6 3.3 29 187-221 5-33 (52)
62 PRK08452 flagellar protein Fla 44.4 1.3E+02 0.0028 22.8 6.8 33 210-242 81-114 (124)
63 COG0279 GmhA Phosphoheptose is 42.9 37 0.0008 27.3 3.7 36 16-51 116-151 (176)
64 PF11211 DUF2997: Protein of u 41.7 55 0.0012 20.4 3.7 32 150-181 3-34 (48)
65 PF02811 PHP: PHP domain; Int 37.6 32 0.0007 26.6 2.8 31 14-45 7-38 (175)
66 COG4245 TerY Uncharacterized p 36.8 84 0.0018 25.9 4.9 45 191-235 22-67 (207)
67 COG4537 ComGC Competence prote 35.5 79 0.0017 23.1 4.1 29 85-113 49-78 (107)
68 PF08140 Cuticle_1: Crustacean 34.8 60 0.0013 19.5 2.8 29 15-51 5-33 (40)
69 PF03928 DUF336: Domain of unk 31.9 56 0.0012 24.7 3.1 36 185-223 1-36 (132)
70 PF01380 SIS: SIS domain SIS d 31.7 65 0.0014 23.5 3.5 35 12-46 56-90 (131)
71 TIGR03544 DivI1A_domain DivIVA 31.6 43 0.00092 19.1 1.9 19 225-243 15-33 (34)
72 KOG3806 Predicted transcriptio 31.0 73 0.0016 25.8 3.7 26 215-240 88-113 (177)
73 TIGR02261 benz_CoA_red_D benzo 29.7 56 0.0012 28.2 3.1 56 134-199 98-158 (262)
74 PF06057 VirJ: Bacterial virul 28.6 76 0.0016 26.1 3.5 35 105-143 43-77 (192)
75 PF01242 PTPS: 6-pyruvoyl tetr 28.1 1E+02 0.0022 22.8 4.0 46 79-124 43-98 (123)
76 PRK10886 DnaA initiator-associ 27.8 90 0.0019 25.6 3.9 34 14-47 114-147 (196)
77 PRK09732 hypothetical protein; 27.3 1.7E+02 0.0036 22.5 5.0 37 184-223 4-40 (134)
78 PRK11092 bifunctional (p)ppGpp 26.7 60 0.0013 32.2 3.1 41 9-49 384-431 (702)
79 COG4728 Uncharacterized protei 26.5 70 0.0015 23.5 2.6 31 66-96 9-39 (124)
80 TIGR00441 gmhA phosphoheptose 26.2 1.1E+02 0.0023 23.8 3.9 36 12-47 82-117 (154)
81 TIGR03192 benz_CoA_bzdQ benzoy 25.5 86 0.0019 27.6 3.5 56 131-196 123-183 (293)
82 PF04539 Sigma70_r3: Sigma-70 25.5 1.4E+02 0.003 19.9 4.0 29 89-117 3-31 (78)
83 TIGR01856 hisJ_fam histidinol 24.7 74 0.0016 26.9 3.0 32 14-46 7-38 (253)
84 PRK07328 histidinol-phosphatas 24.7 78 0.0017 27.0 3.1 31 14-45 10-40 (269)
85 PHA01810 hypothetical protein 23.3 93 0.002 21.4 2.6 38 167-204 12-49 (100)
86 PF08529 NusA_N: NusA N-termin 23.0 3.2E+02 0.007 20.3 6.2 44 183-227 11-55 (122)
87 COG3193 GlcG Uncharacterized p 22.9 2E+02 0.0044 22.4 4.7 36 184-222 5-40 (141)
88 PF06787 UPF0254: Uncharacteri 22.9 3.8E+02 0.0082 21.2 6.2 66 12-95 73-144 (160)
89 PRK06361 hypothetical protein; 22.9 1E+02 0.0022 25.1 3.4 31 14-46 3-33 (212)
90 PF01458 UPF0051: Uncharacteri 22.7 2.8E+02 0.006 23.0 6.0 47 147-200 183-229 (229)
91 PF00564 PB1: PB1 domain; Int 22.6 2.5E+02 0.0054 18.8 6.1 52 185-242 20-71 (84)
92 PF08289 Flu_M1_C: Influenza M 22.4 2.9E+02 0.0062 19.5 5.1 48 79-126 39-86 (95)
93 PF07676 PD40: WD40-like Beta 21.8 45 0.00098 19.0 0.8 11 12-22 12-22 (39)
94 COG0771 MurD UDP-N-acetylmuram 21.6 91 0.002 29.2 3.1 62 134-200 346-411 (448)
95 COG1334 FlaG Uncharacterized f 21.4 3.7E+02 0.008 20.3 6.0 52 191-242 49-110 (120)
96 TIGR02259 benz_CoA_red_A benzo 21.4 1E+02 0.0022 28.6 3.2 52 138-199 274-328 (432)
97 PF06523 DUF1106: Protein of u 21.2 1.6E+02 0.0034 20.2 3.3 31 38-72 36-66 (91)
98 PRK00414 gmhA phosphoheptose i 21.2 1.4E+02 0.003 24.2 3.8 35 12-46 114-148 (192)
99 COG1387 HIS2 Histidinol phosph 21.0 1E+02 0.0023 25.9 3.1 30 13-44 8-37 (237)
100 KOG0083 GTPase Rab26/Rab37, sm 20.9 1E+02 0.0022 24.0 2.6 91 35-141 8-111 (192)
101 PRK02260 S-ribosylhomocysteina 20.5 4.4E+02 0.0096 20.9 6.8 61 146-206 71-150 (158)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-62 Score=414.70 Aligned_cols=224 Identities=37% Similarity=0.622 Sum_probs=215.4
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||+|||||.||+++ |+|+|||+++||||||+|++ ++++.+++.+||++|++|++|+++|+.+|++
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~-G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSS-GAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFR 79 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHH
Confidence 89999999999999999999999995 99999999999999999999 7888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEe
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 166 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 166 (244)
.+.+++|.+++.|++.++++++++.++++|++.+|.|+++++.|||+|++||+|||+ .||+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 80 VLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999997 6999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 026064 167 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 237 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~ 237 (244)
|+|+..++++||++ |+++||++||++++++||+.+.+|++...+++|++|++++ +|+.++++||++++
T Consensus 159 G~g~~~~~~~Le~~--~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~-~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKR--YNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETK-GFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-CEEECCHHHHHHHh
Confidence 99999999999998 6789999999999999999999998877899999999874 59999999999886
No 2
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.8e-62 Score=414.22 Aligned_cols=236 Identities=38% Similarity=0.655 Sum_probs=223.9
Q ss_pred CCCC-CCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEE
Q 026064 1 MSRG-SGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLL 77 (244)
Q Consensus 1 ~~~~-~~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~ 77 (244)
|-|. ++++||+++|+|||||||+|+|||.||+++ |+|+|||+++||||||+|++ +.++..++.+||++|+++++|+
T Consensus 1 ~~~~~~~~~y~~~~~~fsp~Gr~~Q~eya~~av~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~ 79 (241)
T PRK03996 1 MMMQPQQMGYDRAITIFSPDGRLYQVEYAREAVKR-GTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAA 79 (241)
T ss_pred CCCCccccccCCCCceECCCCeEhHHHHHHHHHHh-CCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEE
Confidence 4554 599999999999999999999999999995 99999999999999999999 7777778999999999999999
Q ss_pred EecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcc
Q 026064 78 ATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGH 157 (244)
Q Consensus 78 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~ 157 (244)
++|+.+|++.+.++++.++..|++.++++++++.+++.+++.+|.|+|+++.|||++++||||||+ .||+||++||+|+
T Consensus 80 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~ 158 (241)
T PRK03996 80 SAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGA 158 (241)
T ss_pred EcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred eeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 026064 158 FFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 237 (244)
Q Consensus 158 ~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~ 237 (244)
+.+++++|+|+|+..++++||+. |+++|+++||++++++||+.+.+++....+++|+++++++++|+.++++||++++
T Consensus 159 ~~~~~~~a~G~g~~~~~~~Le~~--~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~ 236 (241)
T PRK03996 159 YLEYKATAIGAGRDTVMEFLEKN--YKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYL 236 (241)
T ss_pred eecceEEEECCCcHHHHHHHHHh--cccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHH
Confidence 99999999999999999999998 6789999999999999999998876656689999999998789999999999999
Q ss_pred HHh
Q 026064 238 TAI 240 (244)
Q Consensus 238 ~~~ 240 (244)
+++
T Consensus 237 ~~~ 239 (241)
T PRK03996 237 EKL 239 (241)
T ss_pred HHh
Confidence 875
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.8e-62 Score=416.89 Aligned_cols=233 Identities=35% Similarity=0.547 Sum_probs=218.7
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCccc-CCCceeeEEecCcEEEEEecChHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLD-QTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
+||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|++ ..++. .++.+|||+|+++++++++|+.+|
T Consensus 4 ~yd~~~~~fsp~Grl~QvEYA~~av~~-g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 4 RYDSRTTTFSPEGRLYQVEYALEAINN-ASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred ccCCCCceECCCCEEhHHHHHHHHHHh-CCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 899999999999999999999999996 99999999999999999999 44444 446899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.+.+.+|.++..|++.+++++++..+++.++..+|.|+|+++.|||+|++||+|||++.||+||++||+|++.+++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~ 162 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKAT 162 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEE
Confidence 99999999999999999999999999999999999999999999999999999999997678999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCC----ceEEEcCHHHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDD----RVFRVLSSEEIDEHLTA 239 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~----~~~~~~~~~ev~~~~~~ 239 (244)
|+|+|+..++++||++ |+++|+++||++++++||+.+.++|..+ .+++|++|++++ +.|+.++++||++++.+
T Consensus 163 a~G~gs~~~~~~Le~~--~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~ 240 (253)
T PTZ00246 163 AIGQNNQTAQSILKQE--WKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKK 240 (253)
T ss_pred EECCCcHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHH
Confidence 9999999999999998 6789999999999999999999998765 589999999874 34999999999999999
Q ss_pred hhcc
Q 026064 240 ISER 243 (244)
Q Consensus 240 ~~~~ 243 (244)
+++.
T Consensus 241 ~~~~ 244 (253)
T PTZ00246 241 VTQE 244 (253)
T ss_pred Hhhh
Confidence 8753
No 4
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-61 Score=385.07 Aligned_cols=244 Identities=66% Similarity=1.013 Sum_probs=238.1
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEE
Q 026064 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLA 78 (244)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~ 78 (244)
|+|||+.+||+.+|+|||||||+|||||+||+++.|.|+||++++|++|+++.|+ .++++++.+..+|+|..+++|++
T Consensus 1 ~s~gs~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~ 80 (246)
T KOG0182|consen 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVI 80 (246)
T ss_pred CCCCCcCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEE
Confidence 8999999999999999999999999999999998899999999999999999999 99999999999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcce
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 158 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~ 158 (244)
+|..+|++..+.++|.++..+++.+|.+||++.||++++++.|.|||+..+||+||.+++.|+|++.||.||.+||.|-+
T Consensus 81 tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy 160 (246)
T KOG0182|consen 81 TGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYY 160 (246)
T ss_pred ecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 159 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 159 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
..+++++.|.....+.++||++++...++|.+|++++|+.||..++.-|..+.++||.+++++.++|++|+.+||+++|.
T Consensus 161 ~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~ 240 (246)
T KOG0182|consen 161 YGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQ 240 (246)
T ss_pred ccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHH
Confidence 99999999999999999999998766678999999999999999999899999999999999998999999999999999
Q ss_pred HhhccC
Q 026064 239 AISERD 244 (244)
Q Consensus 239 ~~~~~~ 244 (244)
.|+||+
T Consensus 241 ~IAEkd 246 (246)
T KOG0182|consen 241 AIAEKD 246 (246)
T ss_pred HhhhcC
Confidence 999986
No 5
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8e-60 Score=394.48 Aligned_cols=211 Identities=71% Similarity=1.078 Sum_probs=199.4
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADA 85 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (244)
+||+++|+|||||||+|||||+||++++|+|+|||+++||||||+|+| +.++..++.+|||+|+++++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999987688999999999999999999 566666688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEE
Q 026064 86 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 165 (244)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a 165 (244)
+.+.+++|.++..|+++++++++++.+|+.+++++|.|+++++.|||++++||||||+++||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999976799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 026064 166 AGLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQEDFKATEIEVGVV 218 (244)
Q Consensus 166 ~G~g~~~~~~~Le~~~~~~~~~--s~~eai~la~~al~~~~~~d~~~~~iev~iv 218 (244)
+|+|++.++++||++|++..+| |.+||++++++||..+.+||+...++||+||
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999996543357 9999999999999999999988779999875
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.3e-59 Score=395.75 Aligned_cols=221 Identities=40% Similarity=0.684 Sum_probs=210.0
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
++||+++|+|||||||+|||||+||+++ |+|+|||+++||||||+|+| +.++..++.+||++|+++++|++||+.+|
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~-G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 79 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVAD 79 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHh
Confidence 4899999999999999999999999995 99999999999999999999 77777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.+.+.++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||+|+|+ ++|+||++||.|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 80 ARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEE
Confidence 99999999999999999999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCCceEEEcCHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDDRVFRVLSSEE 232 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~-~~~iev~iv~~~~~~~~~~~~~e 232 (244)
|+|+|+..++++||+. |+++|+.+||++++++||+.+.+ |+. .++++|++|+++++.|++++++|
T Consensus 159 a~G~g~~~~~~~L~~~--~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKE--YREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999998 67899999999999999999887 654 45899999999987799998875
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-59 Score=390.09 Aligned_cols=208 Identities=38% Similarity=0.558 Sum_probs=197.7
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
.+||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|++ +.++..++.+|||+|++|++++++|+.+|
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~-G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVEN-SGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhc-CCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 5899999999999999999999999996 99999999999999999999 66777778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.+.+++|.+++.|++.++++++++.++++|++++|.|++++++|||+|++||+|||+ +||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 68999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEE
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED-FKATEIEVGVV 218 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d-~~~~~iev~iv 218 (244)
|+|+|+..++++||++ |+++||++||+++++++|+.+.+.+ ....+|||.++
T Consensus 160 a~G~g~~~a~~~Lek~--~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKL--KFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999998 6789999999999999999999854 56678998874
No 8
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-60 Score=372.76 Aligned_cols=229 Identities=33% Similarity=0.590 Sum_probs=217.4
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
.+.||+.+++|||||||||||||++|++ .|+|.|||+.++||||+++|| ++++.+.+.+||++|++||+|++||+.+
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAik-LGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~a 83 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIK-LGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIA 83 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHh-cCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeecccccc
Confidence 4689999999999999999999999999 599999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcccceeEEEEEeCCCCcEEEEECCCcce
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 158 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~ 158 (244)
|++.+++++|.+|++|.+.||++++++.+.+.++++.-+|-.... .|||||++|+||+|+ .||+||+.||+|++
T Consensus 84 DarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 84 DARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTF 162 (241)
T ss_pred chHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCce
Confidence 999999999999999999999999999999999999987754311 489999999999996 89999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 159 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 159 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
++|++-|+|+|++-|.+.|++. |.++|+++||+.+++..|+.+.+..+++.++++.+|++.+ +|+.++++|++..+.
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e--~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~-~f~~~t~EE~~~~i~ 239 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEE--YHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEG-EFHIYTPEEVEQVIK 239 (241)
T ss_pred EEecceeccccchHHHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccC-ceEecCHHHHHHHHh
Confidence 9999999999999999999998 5789999999999999999999999999999999999987 499999999999886
Q ss_pred H
Q 026064 239 A 239 (244)
Q Consensus 239 ~ 239 (244)
+
T Consensus 240 ~ 240 (241)
T KOG0176|consen 240 R 240 (241)
T ss_pred c
Confidence 5
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.9e-59 Score=388.17 Aligned_cols=209 Identities=35% Similarity=0.553 Sum_probs=197.3
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCccc-CCCceeeEEecCcEEEEEecChH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLD-QTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~-~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
.+||+++|+|||||||+|+|||+||+++ |+|+|||+++||||||+|++ ..++. .++.+||++|+++++|++||+.+
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~-G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~ 79 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISH-AGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITS 79 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhc-CCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChH
Confidence 3799999999999999999999999996 99999999999999999999 44444 45899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.+.+++|.+++.|+++++++|+++.+++.|+..+|.|||+++.|||+|++||+|||++.||+||.+||+|++.++++
T Consensus 80 D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 80 DANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999767999999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVV 218 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv 218 (244)
+|+|+++..++++||+. |+++||++||++++++||..+.+||... .+++|++|
T Consensus 160 ~a~G~gs~~~~~~Le~~--y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQD--YKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999998 6799999999999999999999988554 58999875
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-58 Score=389.78 Aligned_cols=231 Identities=44% Similarity=0.702 Sum_probs=218.4
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
.+||+.+|+|||+||++|+|||.+++++.|+|+|||+++||||||+|+| +.++..++.+|||+|+||++|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 3799999999999999999999999998679999999999999999999 4466677799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|++++|.+++.|++.++++++++.+++.+++++|.|+++ .|||+|++||||+|+ ++|+||++||+|++.++++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~ 157 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKA 157 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcC-CCCeEEEECCCCceeecCE
Confidence 9999999999999999999999999999999999999999987 899999999999998 8999999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~-~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
+|+|+|++.++++||+. |+++|+.|||++++++||+.+.+||.. .++++|++++++. +++.++++++..++..+++
T Consensus 158 ~a~Gsgs~~a~~~Le~~--y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~-~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 158 TAIGSGSQFAYGFLEKE--YREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDE-GFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred EEEcCCcHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCC-CeEEcCHHHHHHHHHHHhh
Confidence 99999999999999999 578999999999999999999999985 4588999999974 5999999999999998876
Q ss_pred c
Q 026064 243 R 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 235 ~ 235 (236)
T COG0638 235 K 235 (236)
T ss_pred c
Confidence 5
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-59 Score=386.09 Aligned_cols=205 Identities=39% Similarity=0.626 Sum_probs=195.6
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++ +.++.+++.+||++|++|++|++||+.+|++
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~-G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRK-GTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADAR 79 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHc-CCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHH
Confidence 89999999999999999999999996 99999999999999999999 6677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEe
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 166 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 166 (244)
.+.+++|.+++.|++.++++++++.+++++++++|.|+++++.|||+|++||+|||++++|+||++||+|++.+++++|+
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 80 VLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999867999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 026064 167 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 218 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv 218 (244)
|+|+..++++||++ |+++||.+||++++++||..+.+ ....++||+++
T Consensus 160 G~gs~~~~~~Le~~--~~~~ms~eeai~l~~~~l~~~~~--~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKN--YKEEMTRDDTIKLAIKALLEVVQ--SGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEC
Confidence 99999999999999 67899999999999999999986 45568999875
No 12
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-58 Score=385.41 Aligned_cols=207 Identities=36% Similarity=0.618 Sum_probs=195.3
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++ +.+ .++.+||++|+++++|++||+.+|++
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~-G~t~IgIk~~dgVvlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~~D~~ 77 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQ-GSATVGLKSKTHAVLVALKRATSEL--SSYQKKIFKVDDHIGIAIAGLTADAR 77 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhc-CCCEEEEEeCCEEEEEEeccCcccc--CCccccEEEeCCCEEEEEEeChHhHH
Confidence 89999999999999999999999996 99999999999999999999 433 34669999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEe
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 166 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 166 (244)
.+.+++|.+++.|+++++++++++.+++.+++.+|.|||+.+.|||+|++||+|||+ .||+||++||+|++.+++++|+
T Consensus 78 ~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 78 VLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999996 6899999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEE
Q 026064 167 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVR 219 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d--~~~~~iev~iv~ 219 (244)
|+|++.++++||++|+.+++||++||+++++++|+.+.++| ....+|||++|+
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999999754579999999999999999999987 555799999983
No 13
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-59 Score=373.41 Aligned_cols=233 Identities=37% Similarity=0.576 Sum_probs=220.3
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
+++||+.+|+|||||+|||||||++||++ |+|.||++++|+|||+.+++ ++|.+.+...||..+++|++|+++|+.+
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrk-GstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~a 79 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRK-GSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTA 79 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhc-CceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCc
Confidence 35899999999999999999999999996 99999999999999999999 8899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|++++|.+|+.|+++.+.|++++.++++|+.+.|.|||..+.||||++.||+|||+++.|+||++||+|.+.+|++
T Consensus 80 DArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 80 DARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred cceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999987899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
.|+|.+++.++.+||+.|...+-.+..++++|++++|.++... ...++|++++++.++ ++.++.++|+.++..++.
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs--~~~nie~aVm~~~~~-~~~l~~~~I~~~v~~ie~ 235 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS--GGKNIEVAVMKRRKD-LKMLESEEIDDIVKEIEQ 235 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc--CCCeeEEEEEecCCc-eeecCHHHHHHHHHHHHH
Confidence 9999999999999999876555688899999999999998753 345899999999875 999999999999988754
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-58 Score=381.79 Aligned_cols=208 Identities=39% Similarity=0.673 Sum_probs=200.0
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADA 85 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (244)
+||+++|+|||||||+|+|||.||+++ |+|+|||+++||||||+|++ +.++..++.+||++|+++++|++||+.+|+
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~-G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 79 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADA 79 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHc-CCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHH
Confidence 699999999999999999999999995 99999999999999999999 677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEE
Q 026064 86 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 165 (244)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a 165 (244)
+.+.++++.+++.|+++++++++++.+++.+++.+|.|+++++.|||++++||+|||+ .+|+||++||+|++.+++++|
T Consensus 80 ~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 80 RVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999997 689999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE
Q 026064 166 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVR 219 (244)
Q Consensus 166 ~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~ 219 (244)
+|+|++.++++||+. |+++|+++||++++++||+.+.+++....+++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~--~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKE--YKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999998 6789999999999999999999888866799999986
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.2e-56 Score=373.93 Aligned_cols=207 Identities=52% Similarity=0.826 Sum_probs=197.5
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||+|+|||+|++++ |+|+|||+++||||+|+|++ +.++..++.+||++|+++++++++|+.+|++
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~-G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 79 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKN-GSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADAR 79 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHc-CCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHH
Confidence 89999999999999999999999995 99999999999999999999 5566678899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEe
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 166 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 166 (244)
.+.+.++.++..|+++++++++++.+|+++++++|.|+++++.|||+|++||+|||++.||+||.+||.|++.+++++++
T Consensus 80 ~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 80 VLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999866999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 026064 167 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 218 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv 218 (244)
|+|+..++++||+. |+++|+.+||++++++||+.+.+||+....++|+++
T Consensus 160 G~g~~~~~~~L~~~--~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKR--YKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHh--cccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 99999999999998 678999999999999999999999994458999875
No 16
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-56 Score=373.29 Aligned_cols=206 Identities=35% Similarity=0.626 Sum_probs=195.1
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||+|+|||++|+++ |+|+|||+++||||||+|++ +.++..++.+||++|+++++|+++|+.+|++
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~-G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 79 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKL-GSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADAR 79 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhc-CCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 89999999999999999999999995 99999999999999999999 6677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcC-----CCCcccceeEEEEEeCCCCcEEEEECCCcceeee
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHA-----YMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 161 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~-----~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~ 161 (244)
.+.+.+|.+++.|+++++++++++.++++|++++|.|+++. +.|||+|++||+|||+ .||+||++||+|++.++
T Consensus 80 ~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 80 TLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecc
Confidence 99999999999999999999999999999999999998743 4699999999999996 78999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEE
Q 026064 162 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVV 218 (244)
Q Consensus 162 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv 218 (244)
+++|+|++++.++++|+++ |+++||++||++++++||+.+.+++....++||+++
T Consensus 159 ~~~a~G~~~~~~~~~L~~~--~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEK--YHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999998 678999999999999999999888877789999875
No 17
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-57 Score=357.67 Aligned_cols=227 Identities=36% Similarity=0.613 Sum_probs=219.3
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADA 85 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (244)
+|.+++|+|||+|+|-|+|||+.||.+ |.|.|||+-.||||||++++ +.++.....+|++.|.++|+|.+||+.+|+
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~-G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~ 83 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVN-GQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDY 83 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhC-CCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCce
Confidence 799999999999999999999999996 99999999999999999998 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEE
Q 026064 86 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 165 (244)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a 165 (244)
+.+++..|+.++.|...+++++|+..|...++..+|+|||+++.||||+++++||||+ ++|.||++||+|+++.|+++|
T Consensus 84 RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 84 RVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred eehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhh
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 026064 166 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 166 ~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~ 240 (244)
+|.+...++++||++ |+.+|.+|+++..|+..|++..+.....++|||+++..+ +|+++++.||+++|.++
T Consensus 163 ~Gkn~v~aktFlEkR--~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~--~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKR--YNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGEN--GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHH--hccccccchHHHHHHHHHHHHhccccccCceEEEEecCC--ceeecCHHHHHHHHhcC
Confidence 999999999999998 678999999999999999999999999999999999965 59999999999998754
No 18
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-57 Score=360.89 Aligned_cols=232 Identities=33% Similarity=0.522 Sum_probs=215.3
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
+.+||++.++||||||+||+|||+|||.| |+|+|||||||||||+++|. ++|..+...+|||.|++||+|+++|+.+
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven-~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~ 83 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVEN-SGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIP 83 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhc-CCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEecccc
Confidence 66999999999999999999999999997 78999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|.+.+.+++|.++..|+.+|+.++|...++..++++.|.||.++..||||++.++++||. +||+||.+||+|..+.+++
T Consensus 84 Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~ 162 (254)
T KOG0184|consen 84 DGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKG 162 (254)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceee
Confidence 999999999999999999999999999999999999999999999999999999999995 8999999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~-~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
+|+|.|.+.|++.||++ ...+|+.+|+++.+.+.|..+.+..-. ...+|+.|+...+.+.+..-|+||.+..++++
T Consensus 163 aaiGKgrq~aKtElEKL--~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a 239 (254)
T KOG0184|consen 163 AAIGKGRQAAKTELEKL--KIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA 239 (254)
T ss_pred eeccchhHHHHHHHHhc--ccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence 99999999999999998 566899999999999999988765332 34799999998876666666678877766654
No 19
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-55 Score=350.71 Aligned_cols=234 Identities=35% Similarity=0.563 Sum_probs=217.2
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccC-CCceeeEEecCcEEEEEecChHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQ-TCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~-~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
.||...|+||||||++|||||++++.+.| |+|||-.+||||||++++ ++++.. ...+||++|+||++|+++|+.+|
T Consensus 4 ~ydsrttiFspEGRLyQVEyAmeais~aG-t~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAG-TCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred CcCCcccccCCCcchHHHHHHHHHHhhhc-ceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 78999999999999999999999999755 999999999999999988 777654 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
+..|++.+|..++.|.+++++++|++.|++.|+++.|.|||++|.|||||++|.+|||...|.+||+.||+|++..|++.
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ 162 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKAT 162 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc-CCCCcEEEEEEEeCCc--eEEEcCHHHHHHHHHHhh
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED-FKATEIEVGVVRSDDR--VFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d-~~~~~iev~iv~~~~~--~~~~~~~~ev~~~~~~~~ 241 (244)
++|.++..|.+.|.+-++ ...++++||+.+|++.|..+.+.. +.+..+|++.++++.. .++++.++||.++++++.
T Consensus 163 ciG~N~~Aa~s~Lkqdyk-dd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~ 241 (249)
T KOG0178|consen 163 CIGANSGAAQSMLKQDYK-DDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYH 241 (249)
T ss_pred eeccchHHHHHHHHhhhc-cccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhh
Confidence 999999999999999863 345679999999999999998876 4456899999998864 378999999999999987
Q ss_pred cc
Q 026064 242 ER 243 (244)
Q Consensus 242 ~~ 243 (244)
+.
T Consensus 242 ~~ 243 (249)
T KOG0178|consen 242 ET 243 (249)
T ss_pred hh
Confidence 64
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-54 Score=345.80 Aligned_cols=228 Identities=34% Similarity=0.557 Sum_probs=214.9
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADA 85 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (244)
.||..+|+|||+|||||||||++|++. |+++||+|.++..||++-++ +.+. ..++|||+|++|++++++|+++|+
T Consensus 5 qyd~d~t~wsPqGrl~QvEya~Eavkq-GsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Da 81 (264)
T KOG0863|consen 5 QYDNDVTTWSPQGRLHQVEYAMEAVKQ-GSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADA 81 (264)
T ss_pred cccCceeEECCcceehHHHHHHHHHhc-ccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcch
Confidence 699999999999999999999999996 99999999999999999888 5443 567999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEE
Q 026064 86 RSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS 165 (244)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a 165 (244)
+.|.+++|.+|..+++.+++++++..|...|++.+|..||+.+.|||||.++++|||+ .||+||+++|+|+++++++++
T Consensus 82 rvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 82 RVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeee
Confidence 9999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHh
Q 026064 166 AGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 166 ~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d--~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~ 240 (244)
||+.++.++++||+....+++++.||.+..+++||+.+...| +...+++|+|+.++.+ |..++.+++.+++...
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p-f~~~d~~~~~k~~~~~ 236 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP-FTILDQKDVAKYVDLF 236 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc-eEeecHHHHHHHHHHh
Confidence 999999999999999877889999999999999999998754 5567999999999997 9999999998776543
No 21
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=1.4e-46 Score=315.42 Aligned_cols=202 Identities=21% Similarity=0.257 Sum_probs=186.8
Q ss_pred CceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
|+|+|||+++||||||+|++ ++++.+++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.+
T Consensus 2 G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~l 81 (219)
T TIGR03690 2 GTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGK 81 (219)
T ss_pred CcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 89999999999999999999 588888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCC-CCcEEEEECCCc-ceeeeeEEEecCChHHHHHHHHhhccCCCCCCHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEE-KGPQLYKCDPAG-HFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYE 190 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~-~gp~Ly~id~~G-~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 190 (244)
+++|++++|.++ ...+|||++++||||||++ ++|+||++||+| ++..++++|+|+|+..++++||++ |+++||.+
T Consensus 82 a~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~--~~~~ms~e 158 (219)
T TIGR03690 82 ANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKL--YSPDLDED 158 (219)
T ss_pred HHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhc--CCCCcCHH
Confidence 999999999877 4458999999999999964 579999999999 467779999999999999999998 67899999
Q ss_pred HHHHHHHHHHHHhhhccCCCC---c-----EEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 191 ETVQTAVSALQSVLQEDFKAT---E-----IEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 191 eai~la~~al~~~~~~d~~~~---~-----iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
||++++.+||..+.+||..++ . ++|++|+++ +|+.++++||+++++++++
T Consensus 159 eai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~--g~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 159 DALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITAD--GARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccC--ceEEcCHHHHHHHHHHHHh
Confidence 999999999999999997543 2 399999866 4999999999999999876
No 22
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.1e-46 Score=315.12 Aligned_cols=212 Identities=18% Similarity=0.242 Sum_probs=186.9
Q ss_pred CCCCcch-hhhhHHHHHhccCceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHH
Q 026064 17 SPEGRLF-QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNE 95 (244)
Q Consensus 17 sp~G~~~-Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~ 95 (244)
+|+--+- .-|||+||+++ |+|+|||+++||||||+|++. ++.+|||+|+||++|+++|+.+|++.+++.++.+
T Consensus 8 ~~~~~~~~~~EYA~kav~~-g~T~VGIk~kdgVVLaaek~~-----~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~ 81 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIAR-GRSVVVLTYADGILFVAENPS-----RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRY 81 (228)
T ss_pred CHHHHHhhHHHHHHHHHHc-CCcEEEEEeCCeEEEEEecCC-----CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4443333 35999999996 999999999999999999982 4678999999999999999999999999999999
Q ss_pred HHHhHHHcC-CCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeC-CCCcEEEEECCCcceeeee-EEEecCChHH
Q 026064 96 AAEYRFKFG-YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGHK-ATSAGLKEQE 172 (244)
Q Consensus 96 ~~~~~~~~~-~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~ 172 (244)
++.|++.++ .+++++.+++.+++.+..++ +++.|||+|++|++|||+ +.||+||++||+|++.+++ ++|+|+|++.
T Consensus 82 a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~ 160 (228)
T TIGR03691 82 ADMRGYSYDRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEP 160 (228)
T ss_pred HHHHhhhcCCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHH
Confidence 999999998 68999999988887776665 567899999999999985 4689999999999999976 8999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhh--cc-CCCCcEEEEEEEeCC--ceEEEcCHHHHHHHH
Q 026064 173 AINFLEKKMKNDPAFSYEETVQTAVSALQSVLQ--ED-FKATEIEVGVVRSDD--RVFRVLSSEEIDEHL 237 (244)
Q Consensus 173 ~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~--~d-~~~~~iev~iv~~~~--~~~~~~~~~ev~~~~ 237 (244)
++++||++ |+++||.+||++++++||..+.+ |+ +...+|||+++++++ +.|++++++||+++|
T Consensus 161 a~~~Lek~--y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 161 IATALKES--YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHHHHh--cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 99999998 67899999999999999999964 43 455799999999753 459999999998864
No 23
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-46 Score=305.92 Aligned_cols=189 Identities=19% Similarity=0.270 Sum_probs=174.2
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHH-HhHHHcCCCCCHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAA-EYRFKFGYEMPVD 110 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 110 (244)
+|+|+|||+++||||||+|+| +.++.+++.+|||+|+++++++++|+.+|++.+.+++|.+++ .|++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999 688888899999999999999999999999999999999997 4667899999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHH
Q 026064 111 VLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYE 190 (244)
Q Consensus 111 ~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 190 (244)
.+++++++++ |++++++|||+|++||||||+++||+||++||+|++.+++++|+|+|+.+++++||+.|+++++||.|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 78888899999999999999767899999999999999999999999999999999995322299999
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEE
Q 026064 191 ETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRV 227 (244)
Q Consensus 191 eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~ 227 (244)
||++++.+||+.+.+||..+ ++++|++|++++ +++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g--~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG--VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC--EEe
Confidence 99999999999999999765 589999999985 444
No 24
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=2e-45 Score=312.68 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=185.6
Q ss_pred HHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCC
Q 026064 31 AVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 107 (244)
Q Consensus 31 av~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 107 (244)
.++ +|+|+|||+++||||||+|++ +.++.+++.+||++|+++++++++|+.+|++.+.+++|.+++.|+++++++|
T Consensus 35 ~~~-~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~i 113 (247)
T PTZ00488 35 EFA-HGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELI 113 (247)
T ss_pred ccC-CCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 344 499999999999999999998 6788889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccc--eeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCC
Q 026064 108 PVDVLSRWIADKSQVYTQHAYMRPLGV--VAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 185 (244)
Q Consensus 108 ~~~~la~~l~~~~~~~t~~~~~rP~~v--~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 185 (244)
+++.++++|++++|.+ ||+++ ++||||||+ .||+||++||+|++.+++++|+|+|+..++++||+. |++
T Consensus 114 sv~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~--~k~ 184 (247)
T PTZ00488 114 SVAAASKILANIVWNY------KGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAG--FKW 184 (247)
T ss_pred CHHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhc--CcC
Confidence 9999999999999754 55554 589999996 789999999999999999999999999999999998 678
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 186 AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 186 ~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
+||.+||++++++||+.+.+||..+ .+++|++|++++ |+.++++||+++++++++.
T Consensus 185 dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g--~~~l~~~ei~~~l~~~~~~ 241 (247)
T PTZ00488 185 DLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG--WKKISADDCFDLHQKYAAE 241 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc--cEECCHHHHHHHHHHHhhh
Confidence 9999999999999999999999765 589999999874 8999999999999988753
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-45 Score=303.04 Aligned_cols=185 Identities=18% Similarity=0.305 Sum_probs=173.6
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++.+++.+|||+|++++++++||+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5999999999999999999 5678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++++|.|+++ + |||++++||+|||++.||+||++||+|++.+++++|+|+|+.+++++||+. |+++||.+||+
T Consensus 82 ~~l~~~~~~~~~~-~-rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~--~~~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRS-R-TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRY--YKPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhc-C-CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhc--cCCCCCHHHHH
Confidence 9999999988754 3 899999999999976789999999999999999999999999999999998 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEE
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRV 227 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~ 227 (244)
+++++|++.+.+||+.+ .+++|++|++++ +++
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g--~~~ 190 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG--IRD 190 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC--eEe
Confidence 99999999999999876 589999999885 454
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.5e-45 Score=300.69 Aligned_cols=186 Identities=20% Similarity=0.236 Sum_probs=170.4
Q ss_pred CceEEEEecCCeEEEEeecC--CCccc-CCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK--DKLLD-QTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~--~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
|+|+|||+++||||||+|++ ..++. .++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.+
T Consensus 3 G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~l 82 (195)
T cd03759 3 GGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTF 82 (195)
T ss_pred CceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 89999999999999999999 45544 5578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeee-EEEecCChHHHHHHHHhhccCCCCCCHHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEE 191 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 191 (244)
+++|++++ |+++ .|||+|++||||||++++|+||++||+|++..++ ++|+|+|++.++++||+. |+++||.+|
T Consensus 83 a~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~--~~~~~s~~e 156 (195)
T cd03759 83 SSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESL--WRPDMEPDE 156 (195)
T ss_pred HHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhc--cCCCCCHHH
Confidence 99999998 5553 5799999999999976789999999999998887 999999999999999998 678999999
Q ss_pred HHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEE
Q 026064 192 TVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRV 227 (244)
Q Consensus 192 ai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~ 227 (244)
|++++++||+.+.+||+.+ .+++|++|++++...+.
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~ 193 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDKVTTRT 193 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEe
Confidence 9999999999999999765 58999999998754443
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-44 Score=296.23 Aligned_cols=183 Identities=21% Similarity=0.264 Sum_probs=171.2
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|++ +.++.+++.+|||+|++|++++++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999 4677778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++++|.+++ .||++++||||||+ .||+||++||+|++.+++++|+|+|+..++++||++ |+++||.+||+
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~--~~~~~s~eea~ 153 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSG--YRYDLSVEEAY 153 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhc--CCCCCCHHHHH
Confidence 999999988743 48999999999996 799999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEc
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVL 228 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~ 228 (244)
+++.+||+.+.+||..+ ++++|++|++++ ++++
T Consensus 154 ~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g--~~~~ 187 (188)
T cd03761 154 DLARRAIYHATHRDAYSGGNVNLYHVREDG--WRKI 187 (188)
T ss_pred HHHHHHHHHHHHhcccCCCCeEEEEEcCCc--eEEc
Confidence 99999999999999776 489999999885 5554
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-44 Score=299.70 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=170.8
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
.|+|+|||+++||||||+|++ +.++..++.+||++|+++++|+++|+.+|++.+.+.+|.+++.|++.++++++++.
T Consensus 7 ~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~ 86 (212)
T cd03757 7 NGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEA 86 (212)
T ss_pred CCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHH
Confidence 599999999999999999999 44465788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhcc-------CC
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 184 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------~~ 184 (244)
++++++++++ .+ +.|||++++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|+ |+
T Consensus 87 la~~ls~~ly--~~--R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 162 (212)
T cd03757 87 IAQLLSTILY--SR--RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVER 162 (212)
T ss_pred HHHHHHHHHH--hh--cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCC
Confidence 9999999994 33 3579999999999997678999999999999999999999999999999999864 34
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCc
Q 026064 185 PAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDR 223 (244)
Q Consensus 185 ~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~ 223 (244)
++||++||++++.+||+.+.+||+.+ .+++|++|++++.
T Consensus 163 ~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~ 202 (212)
T cd03757 163 TPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGI 202 (212)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCE
Confidence 89999999999999999999999765 5899999999974
No 29
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.3e-43 Score=290.17 Aligned_cols=180 Identities=29% Similarity=0.488 Sum_probs=171.0
Q ss_pred CceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
|+|+|||+++||||||+|++ +.++.+++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999 678888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEET 192 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 192 (244)
+++|++.+|.+ ++|||+|++||||||+ .||+||.+||+|++.+++++++|+|+..++++||+. |+++||++||
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~--~~~~~s~~ea 153 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDE--YREDMSVEEA 153 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhc--CCCCCCHHHH
Confidence 99999999764 6899999999999997 689999999999999999999999999999999998 5789999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCC
Q 026064 193 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDD 222 (244)
Q Consensus 193 i~la~~al~~~~~~d~~~-~~iev~iv~~~~ 222 (244)
++++++||+.+.+||+.+ .+++|+++++++
T Consensus 154 ~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 154 KKLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999999999776 589999999875
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-43 Score=295.08 Aligned_cols=184 Identities=13% Similarity=0.211 Sum_probs=167.5
Q ss_pred ceEEEEecCCeEEEEeecC--CCcccCCCceeeEEec----CcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCC-CCCH
Q 026064 37 ITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPIT----KYLGLLATGNTADARSLVHQARNEAAEYRFKFGY-EMPV 109 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~ 109 (244)
|-+|||+++||||||+|+| +.++..++.+||++|+ +|++|+.||+.+|++.+++++|.++++|++.+++ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4689999999999999999 6666666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-hhhcCC-----CCcccceeEEEEEeCCCCcEEEEECCCcceeee----eEEEecCChHHHHHHHHh
Q 026064 110 DVLSRWIADKSQV-YTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH----KATSAGLKEQEAINFLEK 179 (244)
Q Consensus 110 ~~la~~l~~~~~~-~t~~~~-----~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~----~~~a~G~g~~~~~~~Le~ 179 (244)
+.+|+++++++++ ++|+.+ .|||+|++||+|||++.||+||++||+|++.++ +++|+|. +++++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998654 555554 489999999999996678999999999999998 5689996 6999999999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc
Q 026064 180 KMKNDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR 223 (244)
Q Consensus 180 ~~~~~~~~s~~eai~la~~al~~~~~~d~~~~-~iev~iv~~~~~ 223 (244)
+ |+++||++||+++|++||..+.+||..++ +|+|++|+++|.
T Consensus 160 ~--yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~ 202 (236)
T cd03765 160 V--ITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSL 202 (236)
T ss_pred h--cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCe
Confidence 8 67899999999999999999999997764 899999999974
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.5e-43 Score=285.75 Aligned_cols=184 Identities=27% Similarity=0.454 Sum_probs=173.0
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|++ +.++.+++.+||++|+++++++++|+.+|++.+.+.+|.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999 5778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+|.+ ++|||+|++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+. |+++|+++||+
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~--~~~~~~~~ea~ 153 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDE--YKEDMTVEEAK 153 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhc--CCCCCCHHHHH
Confidence 9999999764 5799999999999997 789999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~ 229 (244)
+++++||+.+.+||+.+ ++++|++|++++ |++++
T Consensus 154 ~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g--~~~~~ 188 (188)
T cd03764 154 KLAIRAIKSAIERDSASGDGIDVVVITKDG--YKELE 188 (188)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEECCCC--eEeCC
Confidence 99999999999999765 589999999885 77653
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-42 Score=285.60 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=169.4
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|++ +.++.+++.+||++|+++++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999 5677788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
++++++++.+ .|||++++||||||+++||+||++||.|++.+++++++|+|+..++++||+. |+++||++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~--~~~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDAN--YKPGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhc--CCCCCCHHHHH
Confidence 9999999765 3799999999999976789999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCc
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDR 223 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~ 223 (244)
+++++||+.+.+||+.+ ++++|++|++++.
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCCE
Confidence 99999999999999876 4899999998863
No 33
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=284.65 Aligned_cols=182 Identities=19% Similarity=0.285 Sum_probs=169.4
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++..++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999 4567778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
++|++.++.|. .||+|++||||||+ +||+||.+||.|++.+++++|+|+++..++++||++ |+|+||.+||+
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~--~~~~ls~~ea~ 152 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDR--YKPDMTEEEAK 152 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhh--cCCCCCHHHHH
Confidence 99999998652 39999999999996 689999999999999999999999999999999999 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEc
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVL 228 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~ 228 (244)
+++++||+.+.+||+.+ .+++|++|++++ +++.
T Consensus 153 ~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g--~~~~ 186 (189)
T cd03763 153 KLVCEAIEAGIFNDLGSGSNVDLCVITKDG--VEYL 186 (189)
T ss_pred HHHHHHHHHHHHhcCcCCCceEEEEEcCCc--EEEe
Confidence 99999999999999765 589999999986 4444
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4.3e-42 Score=281.73 Aligned_cols=184 Identities=35% Similarity=0.562 Sum_probs=171.7
Q ss_pred HhccCceEEEEecCCeEEEEeecC---CCcc-cCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCC
Q 026064 32 VKATAITSIGVRGKDSVCVVTQKK---DKLL-DQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEM 107 (244)
Q Consensus 32 v~~~G~t~vgi~~~dgVvla~d~~---~~~~-~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 107 (244)
|+ +|+|+|||+++||||||+|++ +..+ .+++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.+++++
T Consensus 1 v~-~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 79 (190)
T PF00227_consen 1 VN-NGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPI 79 (190)
T ss_dssp HH-TSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGT
T ss_pred CC-CCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccc
Confidence 45 499999999999999999998 4555 444479999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeee-eEEEecCChHHHHHHHHhhccCCCC
Q 026064 108 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPA 186 (244)
Q Consensus 108 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~ 186 (244)
+++.+++.++..++.++++.++|||++++|++|||++++|+||.+||+|++.++ +++|+|+|++.++++||+. |+++
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~--~~~~ 157 (190)
T PF00227_consen 80 SPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKL--YKPD 157 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHH--HTTT
T ss_pred cchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhh--ccCC
Confidence 999999999999999999999999999999999998667999999999999999 6999999999999999999 5789
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 026064 187 FSYEETVQTAVSALQSVLQEDFKA-TEIEVGVV 218 (244)
Q Consensus 187 ~s~~eai~la~~al~~~~~~d~~~-~~iev~iv 218 (244)
||++||++++++||+.+.++|..+ ++++|+||
T Consensus 158 ~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 158 LSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 999999999999999999999765 58999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-41 Score=275.69 Aligned_cols=180 Identities=24% Similarity=0.426 Sum_probs=168.1
Q ss_pred ceEEEEecCCeEEEEeecC--CCc-ccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK--DKL-LDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~--~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|++ ..+ ...++.+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999 333 4378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.++.+++ |||++++||||||++++|+||++||+|++.+++++|+|++++.++++||+. |+++||++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~--~~~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRG--YKPDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhc--cCCCCCHHHHH
Confidence 999999976543 899999999999976789999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCC
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDD 222 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~ 222 (244)
+++.+||+.+.+||+.+ .+++|++|++++
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g 184 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDG 184 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCC
Confidence 99999999999998765 589999999986
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.9e-40 Score=270.27 Aligned_cols=178 Identities=40% Similarity=0.673 Sum_probs=166.4
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|++ +....+++.+|||.|+++++++++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999 3334478899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+|.++++ .|||++++||+|||++.+|+||.+||+|++.+++++|+|+++..++++||+. |+++||.+||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~--~~~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKL--YKPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHH--ccCCCCHHHHH
Confidence 9999999998875 7999999999999976799999999999999999999999999999999999 57889999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEE
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVV 218 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv 218 (244)
+++++||+.+.++|..+ .+++|+++
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999855 58999875
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-39 Score=262.39 Aligned_cols=198 Identities=21% Similarity=0.237 Sum_probs=186.0
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
+|||++|++++.|||+|+|+| +.++.+..++||.+|+++++-+.+|-++||+.+.+.+.++|++|++++++.|++..
T Consensus 70 hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsa 149 (285)
T KOG0175|consen 70 HGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSA 149 (285)
T ss_pred CCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHH
Confidence 699999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHH
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEE 191 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 191 (244)
.++.|++++.+| .++ .+.+..+|||||+ +||.||.+|..|+...-+-.++|||+.+|+++|++. |+++||.||
T Consensus 150 ASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsg--Yr~dls~eE 222 (285)
T KOG0175|consen 150 ASKLLSNMVYQY---KGM-GLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSG--YRYDLSDEE 222 (285)
T ss_pred HHHHHHHHHhhc---cCc-chhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccC--CCCCCCHHH
Confidence 999999999765 344 5788999999997 899999999999999999999999999999999998 688999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 192 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 192 ai~la~~al~~~~~~d~~~~-~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
|.+|+++|+..|..||..++ -|.++.|++++ |.++++.+|.++..++.
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG--W~~v~~~Dv~~L~~~~~ 271 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG--WVKVSNTDVSELHYHYY 271 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc--ceecCCccHHHHHHHHH
Confidence 99999999999999999886 68999999995 78999999999966554
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-37 Score=244.15 Aligned_cols=190 Identities=19% Similarity=0.327 Sum_probs=175.3
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
.|+|+|||++.|++|+|+|+| +-.+.+++.+|||+++|+++++.+|+++|+..|...++...+.|++.++..|++..
T Consensus 28 NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s 107 (235)
T KOG0179|consen 28 NGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHS 107 (235)
T ss_pred CCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 488999999999999999999 55678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccC--------
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN-------- 183 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~-------- 183 (244)
+|++|+..+ | ..++.||++..+|+|+|+++++.+|+.||.|++.+..+.|.|+++..++++|+.++..
T Consensus 108 ~A~lls~~L--Y--~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~ 183 (235)
T KOG0179|consen 108 AAQLLSTIL--Y--SKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENA 183 (235)
T ss_pred HHHHHHHHH--h--hcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccC
Confidence 999999999 4 3468899999999999998899999999999999999999999999999999987642
Q ss_pred -CCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEc
Q 026064 184 -DPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVL 228 (244)
Q Consensus 184 -~~~~s~~eai~la~~al~~~~~~d~~~~-~iev~iv~~~~~~~~~~ 228 (244)
+..+|+|+|+.++..+|..|.+||+.++ .++|+|+++++...+.+
T Consensus 184 ~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~ 230 (235)
T KOG0179|consen 184 ERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETL 230 (235)
T ss_pred cccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEee
Confidence 3458999999999999999999999986 79999999998644444
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=241.62 Aligned_cols=186 Identities=18% Similarity=0.300 Sum_probs=174.4
Q ss_pred eEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHH
Q 026064 38 TSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSR 114 (244)
Q Consensus 38 t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~ 114 (244)
+++||++.|+|++|+|+. +.++..++.+|++.+++++.|+++|..+|+.++.+++++.+++|+.++|.++||..+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 799999999999999998 77888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHH
Q 026064 115 WIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQ 194 (244)
Q Consensus 115 ~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~ 194 (244)
++.+.+.++.. ..+||-|++++||+|++.||.||++|..|+..+.++++.|.++.++.++|+++ |+|+||.+||++
T Consensus 83 FtR~~La~~LR--sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~--Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLR--SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRY--YKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHh--cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhh--hCCCCCHHHHHH
Confidence 99999988754 35799999999999999999999999999999999999999999999999999 789999999999
Q ss_pred HHHHHHHHhhhcc-CCCCcEEEEEEEeCCceEEEcC
Q 026064 195 TAVSALQSVLQED-FKATEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 195 la~~al~~~~~~d-~~~~~iev~iv~~~~~~~~~~~ 229 (244)
+..+|+.+..+|= ++..++.|.||+||| .+.++
T Consensus 159 lmkKCv~El~kRlvin~~~f~v~IVdkdG--ir~~~ 192 (200)
T KOG0177|consen 159 LMKKCVLELKKRLVINLPGFIVKIVDKDG--IRKLD 192 (200)
T ss_pred HHHHHHHHHHHhcccCCCCcEEEEEcCCC--ceecc
Confidence 9999999999984 456799999999996 45543
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-35 Score=238.17 Aligned_cols=183 Identities=20% Similarity=0.283 Sum_probs=172.0
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
+|+|++|+.++||||+++|+| ++.+..++++||+.|.++|+|+.+|.++|...+.+.+..+..+|+++.++++++-.
T Consensus 36 TGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~ 115 (271)
T KOG0173|consen 36 TGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVT 115 (271)
T ss_pred cCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceee
Confidence 799999999999999999999 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHH
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEE 191 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 191 (244)
..+++.+.+.+| .+ -.++.+||+|+|. .|||||++.|.|+....+|++.|||+..++++||.+ |+|+|+.||
T Consensus 116 A~~mlkQ~LFrY---qG--~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr--~k~dlt~ee 187 (271)
T KOG0173|consen 116 ALRMLKQHLFRY---QG--HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESR--WKPDLTKEE 187 (271)
T ss_pred HHHHHHHHHHHh---cC--cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHh--cCcccCHHH
Confidence 889999988665 23 4899999999998 899999999999999999999999999999999998 689999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceE
Q 026064 192 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVF 225 (244)
Q Consensus 192 ai~la~~al~~~~~~d~~~~-~iev~iv~~~~~~~ 225 (244)
|++|+.+|+...+.+|+.++ +|++++|++.+..|
T Consensus 188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~ 222 (271)
T KOG0173|consen 188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY 222 (271)
T ss_pred HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence 99999999999999999886 89999999776444
No 41
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-34 Score=227.11 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=184.8
Q ss_pred HhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCC
Q 026064 32 VKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMP 108 (244)
Q Consensus 32 v~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 108 (244)
+. +|+|++|+++++||||++|+| +.++.++-.+|+-+|.|||+|+-||.++|.|.+.++++..+..|...++.+++
T Consensus 16 vs-tGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 16 VS-TGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred cc-cCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 44 699999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCC
Q 026064 109 VDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFS 188 (244)
Q Consensus 109 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s 188 (244)
+...|+...++.++|. .-+...+||||||++.|.++|.+---|...+.+++.-|+|+.+++++++.. |+|+||
T Consensus 95 v~~aA~l~r~~~Y~~r-----e~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~--~r~nMt 167 (224)
T KOG0174|consen 95 VHTAASLFREICYNYR-----EMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDAN--WRPNMT 167 (224)
T ss_pred HHHHHHHHHHHHHhCH-----HhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhh--cCCCCC
Confidence 9999999999986542 237899999999998999999999999999999999999999999999998 689999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 189 YEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 189 ~~eai~la~~al~~~~~~d~~~~-~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
+||++.+..+|+..++.||-+++ .|.+.+|+++|..++.+.++++..+..
T Consensus 168 ~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~~v 218 (224)
T KOG0174|consen 168 LEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQFAV 218 (224)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccccc
Confidence 99999999999999999998875 699999999998888999999876654
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=223.39 Aligned_cols=215 Identities=19% Similarity=0.258 Sum_probs=188.2
Q ss_pred ccceeCCCCcchhhhhHHH--------HHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEec
Q 026064 12 HITIFSPEGRLFQVEYAFK--------AVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATG 80 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~k--------av~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG 80 (244)
..++|.|.|. +++-|.. +.- +||++||+|++||||+|+|+. |.+...++.+||++++||+++++||
T Consensus 12 a~~~f~~~~~--~m~~a~~~~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sG 88 (256)
T KOG0185|consen 12 APGTFYPSGS--LMENAGDYPIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASG 88 (256)
T ss_pred CCCcCcCccc--hhhhccCCCcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCc
Confidence 3566778754 3444433 222 699999999999999999999 8889999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhH-HHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCccee
Q 026064 81 NTADARSLVHQARNEAAEYR-FKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFF 159 (244)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~ 159 (244)
..+|.|.+.+.|........ +..|..+.|+.++++|...+ |..++.+.|+...++|+|+|+++.|+|-.+|-.|..+
T Consensus 89 disD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y 166 (256)
T KOG0185|consen 89 DISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAY 166 (256)
T ss_pred cHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccc
Confidence 99999999999988887754 66779999999999999999 6678899999999999999987789999999999999
Q ss_pred eeeEEEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHH
Q 026064 160 GHKATSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEI 233 (244)
Q Consensus 160 ~~~~~a~G~g~~~~~~~Le~~~~-~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev 233 (244)
+.+..|+|.|+..|.++|++.|. ..++++.+||.+++.+||+....||+.+ .+++|++|+++| +.+-.|..|
T Consensus 167 ~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG--v~i~~p~qv 240 (256)
T KOG0185|consen 167 ESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG--VTISKPYQV 240 (256)
T ss_pred cCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc--eEecCceee
Confidence 99999999999999999999975 4578999999999999999999999987 489999999976 444444433
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-32 Score=210.54 Aligned_cols=182 Identities=18% Similarity=0.239 Sum_probs=169.9
Q ss_pred CceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
|+++||++++|||.||+|.| ......++.+|||+|.|+++++.+|++.|++.+.++++...++|+++.++.|.|+.+
T Consensus 8 Gg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~ 87 (204)
T KOG0180|consen 8 GGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETF 87 (204)
T ss_pred CceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHH
Confidence 88999999999999999999 444556899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceee-eeEEEecCChHHHHHHHHhhccCCCCCCHHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFG-HKATSAGLKEQEAINFLEKKMKNDPAFSYEE 191 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 191 (244)
++++|.++++ + ++-||.+..+|||+|+.++|+|..+|..|+... .++++.|.+++..++.+|.. |+|+|..||
T Consensus 88 s~mvS~~lYe--k--RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~l--y~pnmepd~ 161 (204)
T KOG0180|consen 88 SSMVSSLLYE--K--RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEAL--YEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHH--h--hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHh--cCCCCCHHH
Confidence 9999999953 3 567999999999999988999999999999976 58999999999999999999 789999999
Q ss_pred HHHHHHHHHHHhhhccCCCC-cEEEEEEEeCCc
Q 026064 192 TVQTAVSALQSVLQEDFKAT-EIEVGVVRSDDR 223 (244)
Q Consensus 192 ai~la~~al~~~~~~d~~~~-~iev~iv~~~~~ 223 (244)
.++.+.+||.++.+||+-++ +..|+||+||..
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEEEEEccchh
Confidence 99999999999999998775 999999999853
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.98 E-value=3.4e-31 Score=213.18 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred CceEEEEecCCeEEEEeecC---CCcccCCCceeeEEe-cCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
|+|+|||+++||||||+|+| |.++.+++.+||++| +++++|++||..+|+|.|.++++.+++.|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 68999999999999999999 889999999999999 9999999999999999999999999999882 22 455
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeee--eEEEecCChHHHHHHHHhhccCC-CCCC
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKND-PAFS 188 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-~~~s 188 (244)
+++....+.. +...+|+.+++|++ |+ |+||.+||.|+..+. +++++|||+.+++++||++ |+ |+|
T Consensus 76 ~a~l~~~l~~----~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~--y~~~~m- 143 (172)
T PRK05456 76 AVELAKDWRT----DRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARAL--LENTDL- 143 (172)
T ss_pred HHHHHHHHHh----ccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHh--hhcCCC-
Confidence 5544433321 22236888999984 43 699999999999776 7999999999999999998 56 899
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 026064 189 YEETVQTAVSALQSVLQEDFKAT-EIEVGV 217 (244)
Q Consensus 189 ~~eai~la~~al~~~~~~d~~~~-~iev~i 217 (244)
||++++++|++.+.+||..++ +|+|-.
T Consensus 144 --eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 --SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred --CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 999999999999999998875 677654
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=2.8e-30 Score=206.59 Aligned_cols=161 Identities=14% Similarity=0.048 Sum_probs=135.5
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecC-cEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITK-YLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
+|+|||+++||||||+|+| +.++.+++.+||++|+| |++|+++|..+|++.|.++++.++++|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 5999999999999999999 88999999999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHHhhhcCCCCccc-ceeEEEEEeCCCCcEEEEECCCcceeee--eEEEecCChHHHHHHHHhhccCCCC-CC
Q 026064 113 SRWIADKSQVYTQHAYMRPLG-VVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA-FS 188 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~-v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~-~s 188 (244)
++.+..++. | +.+|+. +.++++++ ++||.+||.|.+.+. +++++|||+++|+++||.+ |+++ ||
T Consensus 76 a~l~~~l~~-~----~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~--yk~~~ms 143 (171)
T cd01913 76 VELAKDWRT-D----RYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARAL--LDHTDLS 143 (171)
T ss_pred HHHHHHHHh-c----cCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHh--hccCCCC
Confidence 444333321 1 345665 55555544 389999999999998 4999999999999999998 5674 98
Q ss_pred HHHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 026064 189 YEETVQTAVSALQSVLQEDFKAT-EIEVGV 217 (244)
Q Consensus 189 ~~eai~la~~al~~~~~~d~~~~-~iev~i 217 (244)
+.++|.+|++.|.+||..++ +|+|..
T Consensus 144 ---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 ---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred ---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 66999999999999999876 677643
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.3e-29 Score=202.73 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=134.0
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEe-cCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
+|+|||+++||||||+|+| +.++.+++.+||++| +++++|+++|..+|++.|.++++.++++|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 5999999999999999999 889999999999999 599999999999999999999999999988643 2455
Q ss_pred HHHHHHHHHHhhhcCCCCc-ccceeEEEEEeCCCCcEEEEECCCcceeee--eEEEecCChHHHHHHHHhhccCCCCCCH
Q 026064 113 SRWIADKSQVYTQHAYMRP-LGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFSY 189 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP-~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~s~ 189 (244)
++.+.++. .+ ..+| +.+.++++|| ++||.+||.|.+.++ +++++|||+++++++||..|+ +++|+
T Consensus 76 a~l~~~~~----~~-~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~-~~~~s- 143 (171)
T TIGR03692 76 VELAKDWR----TD-RYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLR-NTDLS- 143 (171)
T ss_pred HHHHHHHh----hc-ccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhh-cCCCC-
Confidence 55544421 11 2233 3366666543 389999999999996 699999999999999999953 36776
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-cEEEEE
Q 026064 190 EETVQTAVSALQSVLQEDFKAT-EIEVGV 217 (244)
Q Consensus 190 ~eai~la~~al~~~~~~d~~~~-~iev~i 217 (244)
|+++|.+|++.|.+||..++ +|+|..
T Consensus 144 --a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 --AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 99999999999999999876 677643
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=9.2e-29 Score=195.99 Aligned_cols=159 Identities=34% Similarity=0.507 Sum_probs=149.1
Q ss_pred ceEEEEecCCeEEEEeecC--CCc-ccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK--DKL-LDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~--~~~-~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+||++++||||+|+|++ ..+ ......+||+.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999 333 3367889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeee-eEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSYEET 192 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 192 (244)
+.+++.++.+++ .||+++++||+|+|+ ++|+||.+||.|++..+ +++++|+++..+.++|++. ++++++.+|+
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~--~~~~~~~~~~ 154 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKL--YKPDMTLEEA 154 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHH--hcCCCCHHHH
Confidence 999999998876 789999999999997 78999999999999999 9999999999999999998 5788999999
Q ss_pred HHHHHHHHH
Q 026064 193 VQTAVSALQ 201 (244)
Q Consensus 193 i~la~~al~ 201 (244)
++++.+||+
T Consensus 155 ~~~~~~~l~ 163 (164)
T cd01901 155 VELALKALK 163 (164)
T ss_pred HHHHHHHHh
Confidence 999999985
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.58 E-value=8.2e-16 Score=80.85 Aligned_cols=23 Identities=83% Similarity=1.328 Sum_probs=22.3
Q ss_pred CccccceeCCCCcchhhhhHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKA 31 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~ka 31 (244)
||+++|+|||+|||+|||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999987
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-12 Score=101.35 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=125.4
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecC-cEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITK-YLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVD 110 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (244)
++||+|+++-++-|++|+|.. ++.+...+.+|+.+|.. +++.+++|..+|+..|.+.+..++++|. .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---------g 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---------G 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---------C
Confidence 489999999999999999988 88888888888888765 8999999999999999999999998874 2
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeee--eEEEecCChHHHHHHHHhhccCCCCCC
Q 026064 111 VLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFS 188 (244)
Q Consensus 111 ~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~s 188 (244)
.|.+..-++.+.+.....+|.+-.-++|+ |+ -.++-+...|...+. ..++||||..+|.+.-...+. .+++|
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~-~~~ls 147 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALME-NTELS 147 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHh-ccCCC
Confidence 33333334444443333345566666665 33 358888999998864 589999999999999888763 45675
Q ss_pred HHHHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 026064 189 YEETVQTAVSALQSVLQEDFKA-TEIEVGVV 218 (244)
Q Consensus 189 ~~eai~la~~al~~~~~~d~~~-~~iev~iv 218 (244)
|-+++.++|..+.+-++.+ .+|.|..+
T Consensus 148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l 175 (178)
T COG5405 148 ---AREIAEKSLKIAGDICIYTNHNIVVEEL 175 (178)
T ss_pred ---HHHHHHHHHhhhheEEEecCCcEEEEEe
Confidence 7778888998887544444 35555544
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4.5e-11 Score=96.10 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=140.6
Q ss_pred ceEEEEecCCeEEEEeecC-CC-cccCCCceeeEEe---cC-cEEEEEecChHHHHHHHHHHHHHHHHhH-HHcCCCCCH
Q 026064 37 ITSIGVRGKDSVCVVTQKK-DK-LLDQTCVTHLFPI---TK-YLGLLATGNTADARSLVHQARNEAAEYR-FKFGYEMPV 109 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~-~~-~~~~~~~~KI~~i---~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~ 109 (244)
+-|||++...|.|+++|+| +. .-.-...+|+|.. .+ -+++..+|..+-.|.+.+.+....+.-. -..-..+++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 5799999999999999999 22 1112455677655 23 3567789999999999999988775322 122334577
Q ss_pred HHHHHHHHHHHHHhhhcCC------CCcccceeEEEEEeCCCCcEEEEECCCcceee----eeEEEecCChHHHHHHHHh
Q 026064 110 DVLSRWIADKSQVYTQHAY------MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFG----HKATSAGLKEQEAINFLEK 179 (244)
Q Consensus 110 ~~la~~l~~~~~~~t~~~~------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~----~~~~a~G~g~~~~~~~Le~ 179 (244)
-..+..++...++-..+.+ ---|.|++|++|.-..+-|.||.+.|.|++.+ .++.-+|.. .+.+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhh
Confidence 7888888888766543221 12389999999998755689999999999985 378999975 477899999
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEEEeCC
Q 026064 180 KMKNDPAFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVVRSDD 222 (244)
Q Consensus 180 ~~~~~~~~s~~eai~la~~al~~~~~~d~~~~-~iev~iv~~~~ 222 (244)
.+ +-++.++||.++|+-++....+.+++.+ .+++.++.+|.
T Consensus 161 ~i--~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TI--TYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hh--hccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 85 5679999999999999999998888876 78998888884
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=94.17 E-value=2.6 Score=34.39 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=86.2
Q ss_pred ceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWI 116 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l 116 (244)
+-+||.-+++|.|+|+|+|. ++|-|.-.....|-+.| | .|.--+-+.|.+..
T Consensus 2 SLII~y~GknGaViaGDkR~-------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL~kkA 53 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN-------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEELLKKA 53 (194)
T ss_pred eEEEEEecCCCcEEecccee-------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHHHHHH
Confidence 57899999999999999991 34556554444443321 2 34444445555443
Q ss_pred HHHHHH--hh-hcCCCCcccceeEEE------EEeCCCCcEEEEE-------CCCcceeeeeEEEecCCh----------
Q 026064 117 ADKSQV--YT-QHAYMRPLGVVAMVL------GIDEEKGPQLYKC-------DPAGHFFGHKATSAGLKE---------- 170 (244)
Q Consensus 117 ~~~~~~--~t-~~~~~rP~~v~~iva------G~D~~~gp~Ly~i-------d~~G~~~~~~~~a~G~g~---------- 170 (244)
..+=-. .+ .+...+-.+- ++++ |.|. ..-++|.+ |-.|.-.. -...|.++
T Consensus 54 ~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~--~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 54 EELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEIT--NKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEE--EEecCCceeEEEECCHHH
Confidence 322100 00 0111122222 3333 3332 23445553 33333322 23334443
Q ss_pred -HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCC
Q 026064 171 -QEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDD 222 (244)
Q Consensus 171 -~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~-~~~iev~iv~~~~ 222 (244)
+.|...|.++ |.+.|+++++.++...+|..+.....+ +..+++.+.++.-
T Consensus 130 K~ia~~~lkk~--~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~~ 181 (194)
T PF09894_consen 130 KEIANKELKKY--WKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKKE 181 (194)
T ss_pred HHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEecccc
Confidence 5667777777 568999999999999999998765544 4688888777653
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.78 E-value=9.4 Score=32.43 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=96.8
Q ss_pred ceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWI 116 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l 116 (244)
+-+|+.-++||.|+|.|+| . +++-|.-.|-+.|-+. +-.|.--+-+.|++..
T Consensus 2 tLviay~gknGaviaGDrR----------~---------i~frgdee~re~lEek---------LYsGeIkteEEL~r~a 53 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRR----------E---------ITFRGDEEDREKLEEK---------LYSGEIKTEEELARKA 53 (293)
T ss_pred eEEEEEecCCCcEEeccce----------E---------EEEecChhHHHHHHHH---------hhcCccccHHHHHHHH
Confidence 5689999999999999999 2 3345665665554432 2356666667777766
Q ss_pred HHHHHHhh---hcCCCCcccceeEEEEEeCC-----CCcEEEEECCCcceee-----eeEEEecC-------C----hHH
Q 026064 117 ADKSQVYT---QHAYMRPLGVVAMVLGIDEE-----KGPQLYKCDPAGHFFG-----HKATSAGL-------K----EQE 172 (244)
Q Consensus 117 ~~~~~~~t---~~~~~rP~~v~~ivaG~D~~-----~gp~Ly~id~~G~~~~-----~~~~a~G~-------g----~~~ 172 (244)
..+--.++ .+...|-..-+.+++-+... ..-.+|.+--.=...+ ......|. | .+.
T Consensus 54 eel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~Ke~ 133 (293)
T COG4079 54 EELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTKEV 133 (293)
T ss_pred HHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHHHH
Confidence 54432221 01122333333444333221 1134554321111111 12233333 2 245
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCC-CCcEEEEEEEeCCceEEEcCHHHHHHH
Q 026064 173 AINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFK-ATEIEVGVVRSDDRVFRVLSSEEIDEH 236 (244)
Q Consensus 173 ~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~-~~~iev~iv~~~~~~~~~~~~~ev~~~ 236 (244)
+..+|... |.+.++++++.+....+|..+...-.+ +...+++.+.++-..+.++-..+|+.+
T Consensus 134 aneflk~~--l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 134 ANEFLKDN--LTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHhh--ccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 56677766 678899999999999999887754333 568889888876433555555665444
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=78.64 E-value=3.9 Score=31.32 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=38.4
Q ss_pred EEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHH
Q 026064 150 YKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQT 195 (244)
Q Consensus 150 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~l 195 (244)
..+|-+|.....++-..|.|+..|-+-+-.. |...+|+|||.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTe--wvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATE--WVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHH--HHccccHHHHHhc
Confidence 3678899999999999999999999988887 5678999998874
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=65.79 E-value=7.7 Score=25.52 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=28.2
Q ss_pred ceeCC-CCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 14 TIFSP-EGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 14 t~fsp-~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
|.||+ +|.+..-+|...|.++ |-..+||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~-g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKEL-GLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHc-CCCEEEEeeCC
Confidence 57888 9999999999999996 99999998776
No 55
>PRK08868 flagellar protein FlaG; Provisional
Probab=57.05 E-value=63 Score=25.25 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=27.1
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 026064 210 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 210 ~~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~~ 242 (244)
++.+-|.|++++.+ -+|.++++|+-++.+.|.+
T Consensus 99 tgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 99 SGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred CCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 45688999998865 4788999999999888874
No 56
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=54.21 E-value=40 Score=24.48 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 026064 210 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 210 ~~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~~ 242 (244)
++.+-|.+++++++ -++.++++++-++...|.+
T Consensus 65 ~~~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e 98 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVIRQIPPEELLDLAKRLRE 98 (107)
T ss_dssp TTEEEEEEEETTT-SEEEEE-HHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCCcHHHHHHHHHHHH
Confidence 45688999998865 4689999999888877654
No 57
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=52.79 E-value=35 Score=24.09 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=22.7
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
|.+.++++..|+.++|++|.++...-..
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~ 48 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKN 48 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTT
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcC
Confidence 5678877778999999999998876544
No 58
>PRK07738 flagellar protein FlaG; Provisional
Probab=49.78 E-value=96 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 026064 210 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 210 ~~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~~ 242 (244)
++.+-|.+++++.+ -++.++++++-+++..+.+
T Consensus 74 t~~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e 107 (117)
T PRK07738 74 LNEYYVQVVDERTNEVIREIPPKKLLDMYAAMME 107 (117)
T ss_pred CCcEEEEEEECCCCeeeeeCCCHHHHHHHHHHHH
Confidence 45788999998765 4788999999888887754
No 59
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=46.61 E-value=36 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=22.4
Q ss_pred EEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 214 EVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 214 ev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
-|.+.+++++.|+.+++++|.++...-.
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~K 47 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQRK 47 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhhc
Confidence 4677887766799999999999877543
No 60
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=45.73 E-value=15 Score=22.71 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=25.0
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 199 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~a 199 (244)
+.|.....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 458888889999988753 6889999988887653
No 61
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=44.57 E-value=37 Score=21.57 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeC
Q 026064 187 FSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSD 221 (244)
Q Consensus 187 ~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~ 221 (244)
-|+|||++.|.+-|.... ..+++.|+.+.
T Consensus 5 kt~eeAi~~A~~~l~~~~------~~~~~eVi~~g 33 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR------EELEYEVIEEG 33 (52)
T ss_dssp SSHHHHHHHHHHHTT--G------GGEEEEEEE--
T ss_pred CCHHHHHHHHHHHhCCCh------HHEEEEEEEcC
Confidence 488999999888775432 46888888874
No 62
>PRK08452 flagellar protein FlaG; Provisional
Probab=44.36 E-value=1.3e+02 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=26.1
Q ss_pred CCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 026064 210 ATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 210 ~~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~~ 242 (244)
.+.+-|.+++++++ -+|.++|+++-++...+.+
T Consensus 81 ~~~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 81 IKGLVVSVKEANGGKVIREIPSKEAIELMEYMRD 114 (124)
T ss_pred CCcEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 34688999998864 4788999999888877654
No 63
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=42.87 E-value=37 Score=27.29 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=25.9
Q ss_pred eCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEE
Q 026064 16 FSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVV 51 (244)
Q Consensus 16 fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla 51 (244)
+||.|.=--|=-|.|+.+..|-++||+.++||=-++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 566766555555665555569999999999986554
No 64
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=41.74 E-value=55 Score=20.42 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.9
Q ss_pred EEECCCcceeeeeEEEecCChHHHHHHHHhhc
Q 026064 150 YKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 181 (244)
Q Consensus 150 y~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 181 (244)
|.++|+|.+...---..|+....+...||+.+
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777788888888888888764
No 65
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=37.62 E-value=32 Score=26.55 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.3
Q ss_pred ceeC-CCCcchhhhhHHHHHhccCceEEEEecC
Q 026064 14 TIFS-PEGRLFQVEYAFKAVKATAITSIGVRGK 45 (244)
Q Consensus 14 t~fs-p~G~~~Q~eya~kav~~~G~t~vgi~~~ 45 (244)
|.|| ++|....-||...|.++ |-+.|||+=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~-Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEK-GLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHT-TESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHc-CCCEEEEcCC
Confidence 5688 89999999999999995 9999998766
No 66
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=36.79 E-value=84 Score=25.86 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHH
Q 026064 191 ETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDE 235 (244)
Q Consensus 191 eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~ 235 (244)
|+++..++.|......|... ..++++|||.+++-..+.+--++.+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~n 67 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAAN 67 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhh
Confidence 68888888888888778765 5799999999974223344444433
No 67
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=35.54 E-value=79 Score=23.13 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhHHHcCC-CCCHHHHH
Q 026064 85 ARSLVHQARNEAAEYRFKFGY-EMPVDVLS 113 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~la 113 (244)
+..+++.++.+++.|++.+++ +++.+.|.
T Consensus 49 c~A~vkmV~sQ~~~YeLdh~~~~pSl~~L~ 78 (107)
T COG4537 49 CEAVVKMVESQAEAYELDHNRLPPSLSDLK 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 467888999999999999998 66665543
No 68
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=34.79 E-value=60 Score=19.51 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=21.9
Q ss_pred eeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEE
Q 026064 15 IFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVV 51 (244)
Q Consensus 15 ~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla 51 (244)
+-.|||+..|+. +|-..|.+.+..|+|+.
T Consensus 5 ii~~dG~~~q~~--------~~~a~ivl~GpSG~v~s 33 (40)
T PF08140_consen 5 IITPDGTNVQFP--------HGVANIVLIGPSGAVLS 33 (40)
T ss_pred eECCCCCEEECC--------cccceEEEECCceEEee
Confidence 568999999983 34336778888888865
No 69
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=31.93 E-value=56 Score=24.71 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 026064 185 PAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 223 (244)
Q Consensus 185 ~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~ 223 (244)
|.+|.++|.+++..++..+.++.. .+-|.||+..+.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g~---~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERGL---PVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT------EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCC---CeEEEEEECCCC
Confidence 357899999999999999887542 378888888763
No 70
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.74 E-value=65 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=27.2
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
-+-+||..|+-.+.-...+..++.|.++|.|+...
T Consensus 56 ~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~ 90 (131)
T PF01380_consen 56 LVIIISYSGETRELIELLRFAKERGAPVILITSNS 90 (131)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESST
T ss_pred eeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCC
Confidence 45678999999988877777776798887777653
No 71
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=31.64 E-value=43 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.7
Q ss_pred EEEcCHHHHHHHHHHhhcc
Q 026064 225 FRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 225 ~~~~~~~ev~~~~~~~~~~ 243 (244)
++=++++||+.+|.++++.
T Consensus 15 ~rGY~~~eVD~fLd~v~~~ 33 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVADD 33 (34)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4458999999999998764
No 72
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=30.96 E-value=73 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHh
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~ 240 (244)
|++..+++.+|+.++|+||.+++..=
T Consensus 88 I~Wtg~~g~EFkl~dp~eVArlWG~r 113 (177)
T KOG3806|consen 88 IAWTGKDGLEFKLVDPDEVARLWGAR 113 (177)
T ss_pred eEEeCCCCceEEecCHHHHHHHHhhh
Confidence 55666777689999999999988753
No 73
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=29.74 E-value=56 Score=28.21 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=38.4
Q ss_pred ceeE--EEEEeCCCCcEEEEECCCcceeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026064 134 VVAM--VLGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 199 (244)
Q Consensus 134 v~~i--vaG~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~a 199 (244)
+..+ ++|.|. .+..+|..|....+ +.||.|+|+ +||..- ..-+++++|.-+++.++
T Consensus 98 ~~tIiDIGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A-~~L~i~leel~~~a~~~ 158 (262)
T TIGR02261 98 ARAVLDIGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIA-RYLGIAQDEIGSLSQQA 158 (262)
T ss_pred CCEEEEeCCCce----EEEEEcCCCcEeeEEecCcccccccH-----HHHHHH-HHhCCCHHHHHHHHhcC
Confidence 4444 578775 47888999998764 678889984 555442 13457888877776555
No 74
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=28.56 E-value=76 Score=26.06 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeC
Q 026064 105 YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE 143 (244)
Q Consensus 105 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~ 143 (244)
.+-+|+..+..++.+++.|.++++.+. ++|.||.-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~----vvLiGYSF 77 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKR----VVLIGYSF 77 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCce----EEEEeecC
Confidence 355899999999999999998877543 47788853
No 75
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=28.07 E-value=1e+02 Score=22.85 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=29.5
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcC------C----CCCHHHHHHHHHHHHHHhh
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFG------Y----EMPVDVLSRWIADKSQVYT 124 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~------~----~~~~~~la~~l~~~~~~~t 124 (244)
.|..-|+..+.+.++..+..+-..+- . .+|++.+|.++.+.++...
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 46677888888888875554332221 1 1789999999999887654
No 76
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.82 E-value=90 Score=25.59 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.3
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecCCe
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDS 47 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dg 47 (244)
-.+|..|+--.+-.+.+..++.|.++|+|++.++
T Consensus 114 i~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 114 LAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3589999999998888888888999999998765
No 77
>PRK09732 hypothetical protein; Provisional
Probab=27.34 E-value=1.7e+02 Score=22.52 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 026064 184 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 223 (244)
Q Consensus 184 ~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~ 223 (244)
.+.||++.|.+++..++..+.+.. ..+.|.|++..+-
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~g---~~v~iaVvD~~G~ 40 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKNN---WSVSIAVADDGGH 40 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhC---CCEEEEEEcCCCC
Confidence 456999999999999999987652 3689999998873
No 78
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=26.73 E-value=60 Score=32.18 Aligned_cols=41 Identities=24% Similarity=0.548 Sum_probs=33.4
Q ss_pred CccccceeCCCCcch-------hhhhHHHHHhccCceEEEEecCCeEE
Q 026064 9 YDRHITIFSPEGRLF-------QVEYAFKAVKATAITSIGVRGKDSVC 49 (244)
Q Consensus 9 yd~~~t~fsp~G~~~-------Q~eya~kav~~~G~t~vgi~~~dgVv 49 (244)
|+..+-+|||.|++. .+.||...-..-|..|+|.+-++-+|
T Consensus 384 ~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~v 431 (702)
T PRK11092 384 FPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPY 431 (702)
T ss_pred ccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEEC
Confidence 455688999999998 78888888776799999999975443
No 79
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.48 E-value=70 Score=23.47 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=26.7
Q ss_pred eeEEecCcEEEEEecChHHHHHHHHHHHHHH
Q 026064 66 HLFPITKYLGLLATGNTADARSLVHQARNEA 96 (244)
Q Consensus 66 KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 96 (244)
-+|.|-+.+++.+.|..+|...+.+.+++..
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4788999999999999999999888887654
No 80
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.23 E-value=1.1e+02 Score=23.77 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=28.6
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEEecCCe
Q 026064 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDS 47 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dg 47 (244)
-+-.+|..|+-..+-.+.+..++.|.++|+|+....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345788899988888888877777999999988543
No 81
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=25.51 E-value=86 Score=27.56 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=36.9
Q ss_pred cccceeE--EEEEeCCCCcEEEEECCCcceeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHH
Q 026064 131 PLGVVAM--VLGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTA 196 (244)
Q Consensus 131 P~~v~~i--vaG~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la 196 (244)
|-.+..| |+|.|. .+..+|..|..... +.||.|+|+ +||..- ..-+++++|.-+++
T Consensus 123 pp~v~tIIDIGGQDs----K~I~~d~~G~v~dF~MNdkCAAGTGr-----FLE~~A-~~Lgi~leel~~~a 183 (293)
T TIGR03192 123 GNAVRTILDMGGQDC----KAIHCDEKGKVTNFLMNDKCAAGTGR-----GMEVIS-DLMQIPIADLGPRS 183 (293)
T ss_pred CCCCCEEEEeCCCce----EEEEEcCCCcEeeeeecCcccccccH-----HHHHHH-HHcCCCHHHHHHHH
Confidence 3345444 578875 47788999987764 678899984 555432 12357778766654
No 82
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=25.50 E-value=1.4e+02 Score=19.87 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHcCCCCCHHHHHHHHH
Q 026064 89 VHQARNEAAEYRFKFGYEMPVDVLSRWIA 117 (244)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~la~~l~ 117 (244)
.+.+++.........|+.++.+.+|..+.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lg 31 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELG 31 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHc
Confidence 34555566667778999999999998765
No 83
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=24.69 E-value=74 Score=26.93 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.8
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
|.||++|+-.--||+..|+++ |-+.+||.-..
T Consensus 7 t~~s~d~~~~~ee~v~~A~~~-Gl~~i~~TdH~ 38 (253)
T TIGR01856 7 SPFCAHGTDTLEEVVQEAIQL-GFEEICFTEHA 38 (253)
T ss_pred cCCCCCCCCCHHHHHHHHHHc-CCCEEEecCCC
Confidence 579999998888999999995 99999998663
No 84
>PRK07328 histidinol-phosphatase; Provisional
Probab=24.68 E-value=78 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=27.1
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecC
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGK 45 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~ 45 (244)
|.||++|.-.--||+.+|+++ |-+.+||+-.
T Consensus 10 T~~s~~~~~~~ee~v~~A~~~-Gl~~i~~TdH 40 (269)
T PRK07328 10 TPLCGHAVGTPEEYVQAARRA-GLKEIGFTDH 40 (269)
T ss_pred CCCCCCCCCCHHHHHHHHHHC-CCCEEEEecC
Confidence 579999988888999999995 9999999866
No 85
>PHA01810 hypothetical protein
Probab=23.33 E-value=93 Score=21.39 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh
Q 026064 167 GLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVL 204 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~ 204 (244)
|.....+...+.+.+.|.|..+.+.|+.++..|-....
T Consensus 12 gqaytemlqlfnkliqwnpaytfdnainlvsacqqlll 49 (100)
T PHA01810 12 GQAYTEMLQLFNKLIQWNPAYTFDNAINLVSACQQLLL 49 (100)
T ss_pred hHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHH
Confidence 44445566677777789999999999999887754433
No 86
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=23.01 E-value=3.2e+02 Score=20.29 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEE
Q 026064 183 NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRV 227 (244)
Q Consensus 183 ~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~ 227 (244)
...+++.+..++....||..+..+.... .+++| .++.+.+.++.
T Consensus 11 ~ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v-~id~~~g~i~v 55 (122)
T PF08529_consen 11 REKGIDKEVVIEALEEALIKAYKKKYGPEANIRV-EIDEDTGEIKV 55 (122)
T ss_dssp CCCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEE-EEETTTTEEEE
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEE-EEECCCCeEEE
Confidence 3567999999999999999999887654 46776 44555444443
No 87
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=22.94 E-value=2e+02 Score=22.36 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCC
Q 026064 184 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDD 222 (244)
Q Consensus 184 ~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~ 222 (244)
.+.+|++.|.+++..++.++.+. ...+.+.+++..+
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~---g~~VtvaVVD~~G 40 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL---GVPVTVAVVDAGG 40 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh---CCceEEEEECCCC
Confidence 46799999999999999888753 3479999999887
No 88
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function.
Probab=22.93 E-value=3.8e+02 Score=21.24 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=43.5
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEE-----ecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGV-----RGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi-----~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
..-.|+.|+.+.--....|++++.=..=||| .++.+|++++|++ .....|...+|..
T Consensus 73 ~~K~Y~ee~D~~vA~~mA~avk~~~~~dI~IgTTAGiGrGaI~I~t~~~------------------~~~~tSdv~adL~ 134 (160)
T PF06787_consen 73 YIKAYNEENDLEVAKLMAKAVKNKLNCDIGIGTTAGIGRGAICIVTDKN------------------EYVFTSDVYADLR 134 (160)
T ss_pred cceeecccccHHHHHHHHHHHHHHhCCCeeeecccccCCceEEEEeCCc------------------EEEEecceehhHh
Confidence 5567888888887777788888632244454 4667777776655 3455566778877
Q ss_pred HH-HHHHHHH
Q 026064 87 SL-VHQARNE 95 (244)
Q Consensus 87 ~l-~~~~~~~ 95 (244)
.- .+.++++
T Consensus 135 ~~~e~I~~RQ 144 (160)
T PF06787_consen 135 KSDENILERQ 144 (160)
T ss_pred hhHHHHHHHH
Confidence 77 5555544
No 89
>PRK06361 hypothetical protein; Provisional
Probab=22.85 E-value=1e+02 Score=25.13 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=27.4
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
|.|| +|+...-|++..|.+. |-..|||+-..
T Consensus 3 t~~s-dg~~~~~e~v~~A~~~-Gl~~i~iTDH~ 33 (212)
T PRK06361 3 TIFS-DGELIPSELVRRARVL-GYRAIAITDHA 33 (212)
T ss_pred cccc-CCCCCHHHHHHHHHHc-CCCEEEEecCC
Confidence 5688 8999999999999995 99999998775
No 90
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=22.68 E-value=2.8e+02 Score=23.00 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=32.5
Q ss_pred cEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q 026064 147 PQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSAL 200 (244)
Q Consensus 147 p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al 200 (244)
|.|- ++.+-. .-...+++|.=.+...-+|..+ .++.+||.++++++|
T Consensus 183 P~Le-I~~~dV-~a~H~AtvG~idee~LFYL~SR-----Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 183 PELE-IDEDDV-KASHGATVGQIDEEQLFYLMSR-----GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEE-E-SSSE-EEEEEEEEEES-HHHHHHHHCT-----T--HHHHHHHHHHHH
T ss_pred EhHh-cccCCc-EEEEeeEeecCCHHHHHHHHHc-----CCCHHHHHHHHHhhC
Confidence 6663 343333 3346788999999999999975 699999999998875
No 91
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=22.61 E-value=2.5e+02 Score=18.80 Aligned_cols=52 Identities=12% Similarity=0.249 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 185 PAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 185 ~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
++++.++....+.+.+... ...+.+.+.+.+|..+...+.+++...++...+
T Consensus 20 ~~~s~~~L~~~i~~~~~~~------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 20 SDVSFDDLRSKIREKFGLL------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp STSHHHHHHHHHHHHHTTS------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCC------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 4567777777766666443 357999999999876778889989888877543
No 92
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=22.36 E-value=2.9e+02 Score=19.46 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=37.8
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhc
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQH 126 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~ 126 (244)
+--.+|++.+.+.+|..++--+-.--.+-+-..|+..+-+.+|.|-.+
T Consensus 39 seq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~ 86 (95)
T PF08289_consen 39 SEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKR 86 (95)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHH
Confidence 445789999999999998887765556667788999888888877443
No 93
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.76 E-value=45 Score=18.99 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=6.6
Q ss_pred ccceeCCCCcc
Q 026064 12 HITIFSPEGRL 22 (244)
Q Consensus 12 ~~t~fsp~G~~ 22 (244)
.--.|||||+-
T Consensus 12 ~~p~~SpDGk~ 22 (39)
T PF07676_consen 12 GSPAWSPDGKY 22 (39)
T ss_dssp EEEEE-TTSSE
T ss_pred cCEEEecCCCE
Confidence 33478898864
No 94
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=21.60 E-value=91 Score=29.16 Aligned_cols=62 Identities=19% Similarity=0.117 Sum_probs=41.4
Q ss_pred ceeEEEEEeCCCCcEEEEECCCccee---eeeEEEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHH
Q 026064 134 VVAMVLGIDEEKGPQLYKCDPAGHFF---GHKATSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSAL 200 (244)
Q Consensus 134 v~~ivaG~D~~~gp~Ly~id~~G~~~---~~~~~a~G~g~~~~~~~Le~~~~-~~~~~s~~eai~la~~al 200 (244)
+.+|++|.|+ ++. +++..... .-....+|..+..+...|++... ....-++++|+..+..-.
T Consensus 346 v~lI~GG~~K-g~d----f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDK-GAD----FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCC-CCC----hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 6678888886 333 34444433 34588999999999999988732 334467778877765544
No 95
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=21.37 E-value=3.7e+02 Score=20.33 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhc---cC------CCCcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhhc
Q 026064 191 ETVQTAVSALQSVLQE---DF------KATEIEVGVVRSDDR-VFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 191 eai~la~~al~~~~~~---d~------~~~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~~ 242 (244)
|.++++.+=|....+. ++ ..+.+-|.|++++++ -++.++|+++=++...+.+
T Consensus 49 e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 49 EKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAARMRD 110 (120)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHHHHH
Confidence 3455555555444432 22 234678999999875 3678999999888877654
No 96
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=21.36 E-value=1e+02 Score=28.57 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=35.6
Q ss_pred EEEEeCCCCcEEEEECCCcceeee---eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHH
Q 026064 138 VLGIDEEKGPQLYKCDPAGHFFGH---KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSA 199 (244)
Q Consensus 138 vaG~D~~~gp~Ly~id~~G~~~~~---~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~a 199 (244)
|+|.|. .+..+|..|.+... +.||.|+|+ +||..-+ .-+++++|.-+++.++
T Consensus 274 IGGQDs----K~I~ld~~G~V~dF~MNDKCAAGTGr-----FLE~mA~-~Lgi~leEl~~lA~~a 328 (432)
T TIGR02259 274 IGGQDT----KGIQIDDHGIVENFQMNDRCAAGCGR-----YLGYIAD-EMNMGLHELGPLAMKS 328 (432)
T ss_pred eCCCce----EEEEEcCCCcEeeeeecCcccccchH-----HHHHHHH-HcCCCHHHHHHHHhcC
Confidence 578775 47899999987754 678889984 5554421 3457888777765544
No 97
>PF06523 DUF1106: Protein of unknown function (DUF1106); InterPro: IPR009490 This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown.
Probab=21.20 E-value=1.6e+02 Score=20.18 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=21.4
Q ss_pred eEEEEecCCeEEEEeecCCCcccCCCceeeEEecC
Q 026064 38 TSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITK 72 (244)
Q Consensus 38 t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~ 72 (244)
.++-|||.+|++-.+=+. .+++.+.||--+.
T Consensus 36 iv~t~kcs~g~iylsi~v----~pnn~~hi~ly~k 66 (91)
T PF06523_consen 36 IVLTIKCSNGIIYLSIKV----NPNNSNHIFLYHK 66 (91)
T ss_pred EEEEEEecCcEEEEEEEe----CCCCcceEEEEec
Confidence 788899999998775443 3455566665544
No 98
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=21.17 E-value=1.4e+02 Score=24.21 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=28.6
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
-+-.+|..|+--.+--+.+..++.|.++|+|++..
T Consensus 114 v~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 114 VLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34468889998888888888887899999999874
No 99
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=21.04 E-value=1e+02 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.0
Q ss_pred cceeCCCCcchhhhhHHHHHhccCceEEEEec
Q 026064 13 ITIFSPEGRLFQVEYAFKAVKATAITSIGVRG 44 (244)
Q Consensus 13 ~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~ 44 (244)
=|+|| +|...-.|++.+|... |-..++++=
T Consensus 8 HT~~s-dg~~~~~e~~~~A~~~-g~~~~~iTd 37 (237)
T COG1387 8 HTVFS-DGEATPEEMVEAAIEL-GLEYIAITD 37 (237)
T ss_pred Ccccc-cCCCCHHHHHHHHHHc-CCeEEEEec
Confidence 37899 9999999999999985 877777653
No 100
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=20.88 E-value=1e+02 Score=24.02 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=49.2
Q ss_pred cCceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEE---EE-EecChHHHHHHHHHHHHHHHHhH---------H
Q 026064 35 TAITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLG---LL-ATGNTADARSLVHQARNEAAEYR---------F 101 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~---~~-~sG~~~D~~~l~~~~~~~~~~~~---------~ 101 (244)
.|.||+=|++|||..|+..-.+- +--.-.+|+..+++.-+ |+ .+| . ++.|..-..|. +
T Consensus 8 ~gktcllir~kdgafl~~~fist-vgid~rnkli~~~~~kvklqiwdtag-q-------erfrsvt~ayyrda~alllly 78 (192)
T KOG0083|consen 8 TGKTCLLIRFKDGAFLAGNFIST-VGIDFRNKLIDMDDKKVKLQIWDTAG-Q-------ERFRSVTHAYYRDADALLLLY 78 (192)
T ss_pred cCceEEEEEeccCceecCceeee-eeeccccceeccCCcEEEEEEeeccc-h-------HHHhhhhHhhhcccceeeeee
Confidence 48899999999999988532210 00122356666655332 22 233 1 22222222222 1
Q ss_pred HcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEE
Q 026064 102 KFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGI 141 (244)
Q Consensus 102 ~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~ 141 (244)
.-...-+.+.+-.||+.+. +|.+. .|.+++.|-
T Consensus 79 diankasfdn~~~wlsei~-ey~k~------~v~l~llgn 111 (192)
T KOG0083|consen 79 DIANKASFDNCQAWLSEIH-EYAKE------AVALMLLGN 111 (192)
T ss_pred ecccchhHHHHHHHHHHHH-HHHHh------hHhHhhhcc
Confidence 2234567888888888765 46543 466666663
No 101
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=20.50 E-value=4.4e+02 Score=20.92 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=43.8
Q ss_pred CcEEEEECCCcceeeeeEEEec-CChHHHHHHHHhhccC------------------CCCCCHHHHHHHHHHHHHHhhhc
Q 026064 146 GPQLYKCDPAGHFFGHKATSAG-LKEQEAINFLEKKMKN------------------DPAFSYEETVQTAVSALQSVLQE 206 (244)
Q Consensus 146 gp~Ly~id~~G~~~~~~~~a~G-~g~~~~~~~Le~~~~~------------------~~~~s~~eai~la~~al~~~~~~ 206 (244)
+-.+..+.|-|+...+.....| ...+.+...|++-+++ ..++|++.|.+.|.+-|......
T Consensus 71 ~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~~~~~eVPga~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~ 150 (158)
T PRK02260 71 GVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVLDDQEEVPGANEYQCGNYKDHSLEGAKEIARKILDQGISV 150 (158)
T ss_pred CceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHHhhcCCCCCCChhcCCChhhCCHHHHHHHHHHHHHhhccc
Confidence 4457888999999988888888 6666666666654321 23578888888888888765543
Done!