Query 026064
Match_columns 244
No_of_seqs 134 out of 1093
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_A 20S proteasome; cell cy 100.0 1E-65 3.4E-70 437.5 31.2 244 1-244 1-246 (246)
2 1ryp_A 20S proteasome; multica 100.0 3.2E-65 1.1E-69 433.6 28.0 236 7-244 1-243 (243)
3 3h4p_A Proteasome subunit alph 100.0 8.5E-66 2.9E-70 441.5 22.9 238 1-243 4-243 (264)
4 1iru_B 20S proteasome; cell cy 100.0 2.4E-63 8.2E-68 419.6 29.6 230 6-241 2-233 (233)
5 1ryp_C 20S proteasome; multica 100.0 3.9E-63 1.3E-67 421.0 31.1 232 8-242 4-243 (244)
6 1iru_C 20S proteasome; cell cy 100.0 6.9E-63 2.4E-67 423.3 30.1 233 8-243 4-243 (261)
7 1yar_A Proteasome alpha subuni 100.0 3.7E-63 1.3E-67 418.4 27.7 226 7-237 6-233 (233)
8 1ryp_D 20S proteasome; multica 100.0 2.3E-62 7.9E-67 415.6 30.4 232 8-243 1-237 (241)
9 1j2p_A Alpha-ring, proteasome 100.0 3.3E-62 1.1E-66 415.8 30.2 231 7-243 6-239 (246)
10 1iru_G 20S proteasome; cell cy 100.0 1.7E-62 5.9E-67 419.3 28.1 233 6-241 4-240 (254)
11 1iru_E 20S proteasome; cell cy 100.0 2.1E-62 7.2E-67 415.8 27.4 234 1-240 1-241 (241)
12 1iru_D 20S proteasome; cell cy 100.0 2E-62 7E-67 417.5 26.9 229 9-243 3-235 (248)
13 1ryp_B 20S proteasome; multica 100.0 9.6E-62 3.3E-66 413.8 29.6 230 8-240 4-250 (250)
14 1ryp_E 20S proteasome; multica 100.0 6.1E-62 2.1E-66 413.2 27.5 230 10-243 1-238 (242)
15 1iru_F 20S proteasome; cell cy 100.0 5E-62 1.7E-66 418.3 26.6 231 7-242 4-238 (263)
16 3nzj_F Proteasome component C1 100.0 8.9E-62 3E-66 420.5 28.3 228 6-235 5-238 (288)
17 1ryp_G 20S proteasome; multica 100.0 6.8E-61 2.3E-65 407.2 28.8 235 6-242 1-240 (244)
18 1ryp_F 20S proteasome; multica 100.0 1.9E-61 6.5E-66 408.0 22.5 225 7-237 3-233 (233)
19 1q5q_A Proteasome alpha-type s 100.0 1.8E-52 6.3E-57 358.0 22.4 219 15-243 6-238 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.5E-50 1.2E-54 341.3 27.3 208 24-241 16-238 (248)
21 3h4p_a Proteasome subunit beta 100.0 2.3E-48 7.9E-53 325.1 25.2 201 36-244 1-206 (219)
22 1yar_H Proteasome beta subunit 100.0 2.9E-47 9.9E-52 318.0 27.1 202 30-241 3-208 (217)
23 2jay_A Proteasome; hydrolase; 100.0 8.9E-48 3E-52 333.4 23.7 231 6-243 22-277 (291)
24 3nzj_K Proteasome component PR 100.0 1.6E-47 5.6E-52 331.0 23.2 209 26-243 66-278 (287)
25 1q5r_H Proteasome beta-type su 100.0 4.2E-47 1.4E-51 329.4 25.6 210 28-243 58-285 (294)
26 1j2q_H Proteasome beta subunit 100.0 1.2E-46 4E-51 311.0 25.9 196 37-241 1-201 (202)
27 1q5q_H Proteasome beta-type su 100.0 3.3E-46 1.1E-50 315.2 26.0 202 37-243 1-220 (235)
28 1ryp_L 20S proteasome; multica 100.0 3E-46 1E-50 310.8 23.4 199 37-243 1-203 (212)
29 1iru_L 20S proteasome; cell cy 100.0 6.7E-46 2.3E-50 306.9 23.4 198 37-243 1-202 (204)
30 1iru_H 20S proteasome; cell cy 100.0 1.9E-46 6.5E-51 310.4 19.7 196 37-239 1-200 (205)
31 1ryp_N 20S proteasome; multica 100.0 1.3E-46 4.4E-51 317.3 15.5 201 30-236 3-217 (233)
32 1iru_N 20S proteasome; cell cy 100.0 2.4E-46 8.2E-51 312.8 16.9 202 30-237 3-209 (219)
33 1iru_M 20S proteasome; cell cy 100.0 1.4E-44 4.6E-49 301.0 25.1 185 35-223 8-203 (213)
34 1ryp_H 20S proteasome; multica 100.0 1E-44 3.5E-49 300.1 21.7 191 29-228 3-197 (205)
35 1g0u_M Proteasome component PR 100.0 5.7E-46 2E-50 319.0 13.6 207 24-236 30-250 (266)
36 3nzj_H Proteasome component PU 100.0 4.3E-44 1.5E-48 306.0 24.6 190 29-228 23-216 (261)
37 1ryp_M 20S proteasome; multica 100.0 6.3E-44 2.2E-48 298.8 24.8 187 32-223 6-212 (222)
38 1ryp_K 20S proteasome; multica 100.0 5.7E-44 1.9E-48 294.0 24.1 188 37-230 2-194 (198)
39 3unf_N Proteasome subunit beta 100.0 1.3E-44 4.6E-49 298.0 18.5 193 37-238 1-198 (199)
40 3unf_H Proteasome subunit beta 100.0 4.8E-44 1.7E-48 301.4 22.2 188 37-234 1-192 (234)
41 1iru_J 20S proteasome; cell cy 100.0 3.9E-43 1.3E-47 290.5 25.2 189 35-229 7-201 (205)
42 1ryp_J 20S proteasome; multica 100.0 1.2E-42 4E-47 287.4 25.7 188 35-229 7-200 (204)
43 1iru_K 20S proteasome; cell cy 100.0 8.1E-43 2.8E-47 287.8 23.2 187 37-229 2-192 (201)
44 1ryp_I 20S proteasome; multica 100.0 1.5E-42 5.1E-47 290.5 24.4 184 37-229 1-188 (222)
45 1iru_I 20S proteasome; cell cy 100.0 1.7E-41 5.9E-46 286.1 24.5 184 37-230 1-188 (234)
46 2z3b_A ATP-dependent protease 100.0 1.4E-35 4.7E-40 240.5 18.4 165 35-218 4-179 (180)
47 1m4y_A ATP-dependent protease 100.0 4.4E-35 1.5E-39 235.7 18.6 164 37-218 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 7.6E-35 2.6E-39 235.0 18.2 165 37-219 1-173 (174)
49 2hc5_A ORF 99, hypothetical pr 61.8 18 0.0006 26.2 5.5 33 210-242 66-99 (117)
50 3rj2_X ORF158L protein, putati 45.6 6.6 0.00022 28.5 0.9 17 7-23 53-69 (138)
51 1yo5_C SAM pointed domain cont 43.6 37 0.0013 23.6 4.5 28 215-242 31-58 (97)
52 2yxo_A Histidinol phosphatase; 40.4 17 0.00059 29.3 2.9 33 14-47 8-40 (267)
53 2dao_A Transcription factor ET 38.0 40 0.0014 24.3 4.1 29 215-243 28-56 (118)
54 3jx9_A Putative phosphoheptose 37.0 27 0.00094 26.8 3.4 31 13-44 81-112 (170)
55 3jtg_A ETS-related transcripti 32.7 66 0.0023 22.6 4.5 27 215-241 25-51 (103)
56 3hvz_A Uncharacterized protein 32.6 29 0.001 23.0 2.5 42 9-51 4-52 (78)
57 1vd2_A Protein kinase C, IOTA 32.1 68 0.0023 21.8 4.4 50 184-238 23-72 (89)
58 1wwx_A E74-like factor 5 ESE-2 27.0 59 0.002 23.0 3.4 27 215-241 29-55 (107)
59 4gof_A Small glutamine-rich te 26.3 80 0.0027 19.2 3.5 36 172-208 8-45 (52)
60 4asv_A Small glutamine-rich te 24.1 1.1E+02 0.0037 21.0 4.1 35 172-207 25-61 (92)
61 1x92_A APC5045, phosphoheptose 23.7 82 0.0028 23.9 4.1 33 13-45 117-149 (199)
62 2yva_A DNAA initiator-associat 23.5 83 0.0029 23.8 4.1 34 13-46 113-146 (196)
63 1m65_A Hypothetical protein YC 22.6 55 0.0019 25.8 3.0 32 14-46 10-41 (245)
64 2wuj_A Septum site-determining 21.7 23 0.00078 22.0 0.3 18 225-242 17-34 (57)
65 2i2w_A Phosphoheptose isomeras 21.4 86 0.0029 24.3 3.8 33 13-45 135-167 (212)
66 2lxb_A Small glutamine-rich te 21.1 1.5E+02 0.005 19.5 4.2 35 172-207 13-49 (74)
67 1m3s_A Hypothetical protein YC 21.1 1E+02 0.0036 23.0 4.2 35 12-46 82-116 (186)
68 2xbl_A Phosphoheptose isomeras 20.8 1E+02 0.0035 23.2 4.1 33 13-45 120-152 (198)
69 3fpw_A HBPS, extracellular HAE 20.6 1.5E+02 0.0053 23.1 5.0 38 183-223 61-98 (192)
70 1sau_A Sulfite reductase, desu 20.4 1.5E+02 0.0051 21.2 4.5 36 81-120 46-81 (115)
71 3kol_A Oxidoreductase, glyoxal 20.2 1.2E+02 0.0042 21.1 4.3 19 145-163 132-150 (156)
No 1
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1e-65 Score=437.47 Aligned_cols=244 Identities=61% Similarity=0.983 Sum_probs=228.4
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEE
Q 026064 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLA 78 (244)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~ 78 (244)
|.|.++++||+++|+|||||||||||||.||++++|+|+|||+++||||||+|+| ++++.+++.+||++|++++++++
T Consensus 1 ~~m~~~~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~ 80 (246)
T 1iru_A 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVM 80 (246)
T ss_dssp -CCSCCCTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEE
T ss_pred CCCCccCCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEE
Confidence 6676778999999999999999999999999995499999999999999999999 78888889999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcce
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 158 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~ 158 (244)
+|+.+|++.|.++++.+++.|+++++++++++.+++.+++++|.|+++++.|||++++||||||+++||+||++||+|++
T Consensus 81 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~ 160 (246)
T 1iru_A 81 TGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY 160 (246)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCE
T ss_pred eccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999997678999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 159 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 159 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
.+++++|+|+|++.++++||++|++.++||++||++++++||..+.+||.+..+++|++|+++++.|++++++||++++.
T Consensus 161 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 240 (246)
T 1iru_A 161 CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLV 240 (246)
T ss_dssp EEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHH
Confidence 99999999999999999999995322299999999999999999999995556899999999976699999999999999
Q ss_pred HhhccC
Q 026064 239 AISERD 244 (244)
Q Consensus 239 ~~~~~~ 244 (244)
++++++
T Consensus 241 ~~~~~~ 246 (246)
T 1iru_A 241 ALAERD 246 (246)
T ss_dssp HHHTC-
T ss_pred HhhccC
Confidence 998875
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.2e-65 Score=433.60 Aligned_cols=236 Identities=52% Similarity=0.852 Sum_probs=223.4
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
++||+++|+|||||||||||||.||++++|+|+|||+++||||||+|+| ++++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999994399999999999999999999 78888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+++||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999997678999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDP-----AFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTA 239 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~-----~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~ 239 (244)
|+|+|++.++++||+.|++.+ +||++||++++++||..+.+||.+..+++|++|++++ |++++++||++++.+
T Consensus 161 a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g--~~~l~~~ei~~~~~~ 238 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK--FFTLSAENIEERLVA 238 (243)
T ss_dssp EESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE--EEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC--eEECCHHHHHHHHHH
Confidence 999999999999999964211 8999999999999999999999655699999999984 999999999999999
Q ss_pred hhccC
Q 026064 240 ISERD 244 (244)
Q Consensus 240 ~~~~~ 244 (244)
+++++
T Consensus 239 ~~~~~ 243 (243)
T 1ryp_A 239 IAEQD 243 (243)
T ss_dssp HTTTC
T ss_pred hhccC
Confidence 98875
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.5e-66 Score=441.51 Aligned_cols=238 Identities=34% Similarity=0.602 Sum_probs=216.2
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEE
Q 026064 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLA 78 (244)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~ 78 (244)
|.|.++++||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| .+++.+++.+||++|++|++|++
T Consensus 4 ~~~~~~~~yd~~~t~fSp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~ 82 (264)
T 3h4p_A 4 MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRR-GTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAAT 82 (264)
T ss_dssp ------------CCCCCSSSSCHHHHHHHHHHHH-SCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEE
T ss_pred CcCCCccccCCCcceECCCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEe
Confidence 7788899999999999999999999999999995 99999999999999999999 66888899999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcce
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHF 158 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~ 158 (244)
+|+.+|++.|.++++.+++.|+++++++++++.+++.|++++|.|++++++|||+|++||||||+ +||+||++||+|++
T Consensus 83 aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~ 161 (264)
T 3h4p_A 83 SGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGAL 161 (264)
T ss_dssp EECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999996 79999999999999
Q ss_pred eeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 159 FGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 159 ~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
.+++++|+|+|+..++++||+. |+++||++||++++++||..+.++ ....+++|++|++++.+|++++++||+++++
T Consensus 162 ~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~a~~~-~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~ 238 (264)
T 3h4p_A 162 IEYKATAIGSGRPVVMELLEKE--YRDDITLDEGLELAITALTKANED-IKPENVDVCIITVKDAQFKKIPVEEIKKLIE 238 (264)
T ss_dssp EEESEEEESTTHHHHTTTHHHH--CCTTCCSHHHHHHHHHHHHHHSSS-CCTTSEEEEEEETTTTEEEECCTTTTGGGTT
T ss_pred EecCeEEECCCHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEeCCCcEEECCHHHHHHHHH
Confidence 9999999999999999999998 678999999999999999999987 6556999999999877899999999999998
Q ss_pred Hhhcc
Q 026064 239 AISER 243 (244)
Q Consensus 239 ~~~~~ 243 (244)
++.++
T Consensus 239 ~~~~~ 243 (264)
T 3h4p_A 239 KVKKK 243 (264)
T ss_dssp TTTTS
T ss_pred HHHHh
Confidence 88654
No 4
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.4e-63 Score=419.62 Aligned_cols=230 Identities=35% Similarity=0.602 Sum_probs=219.9
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
.++||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|+| ++++.+++.+||++|+++++++++|+.+
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~a 80 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAG-GAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGP 80 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHc-CCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccH
Confidence 35899999999999999999999999996 99999999999999999999 7888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||||||+ +||+||++||+|++.++++
T Consensus 81 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999989999999999999995 7899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
+|+|+|++.++++||++ |+++||++||++++++||..+.++|.+.++++|++|++++ |++++++||++++++++
T Consensus 160 ~aiG~gs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKR--YNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EEESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred EEECCCCHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC--EEECCHHHHHHHHHhcC
Confidence 99999999999999999 5789999999999999999999999666699999999984 99999999999998763
No 5
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.9e-63 Score=421.01 Aligned_cols=232 Identities=31% Similarity=0.560 Sum_probs=219.5
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCccc-CCCceeeEEecCcEEEEEecChHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLD-QTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
+||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ..++. +++.+||++|+++++|+++|+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISH-AGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 899999999999999999999999996 99999999999999999999 55555 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++++++++|.|+|++++|||++++||||||+++||+||++||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAI 162 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995479999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc-cCCCCcEEEEEEE--eCCce--EEEcCHHHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQE-DFKATEIEVGVVR--SDDRV--FRVLSSEEIDEHLTA 239 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~-d~~~~~iev~iv~--~~~~~--~~~~~~~ev~~~~~~ 239 (244)
|+|+|++.++++||++ |+++||++||++++++||..+.+| +.+..+++|++|+ +++++ |+.++++||++++.+
T Consensus 163 aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~ 240 (244)
T 1ryp_C 163 SVGANTSAAQTLLQMD--YKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVK 240 (244)
T ss_dssp EESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHh--hhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHH
Confidence 9999999999999999 578999999999999999999999 5555689999999 88765 999999999999998
Q ss_pred hhc
Q 026064 240 ISE 242 (244)
Q Consensus 240 ~~~ 242 (244)
+..
T Consensus 241 ~~~ 243 (244)
T 1ryp_C 241 TGI 243 (244)
T ss_dssp HTC
T ss_pred hhc
Confidence 753
No 6
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=6.9e-63 Score=423.30 Aligned_cols=233 Identities=29% Similarity=0.497 Sum_probs=219.2
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
+||+++|+|||||||||||||++|+++ |+|+|||+++||||||+|+| +.++..++.+||++|+++++|+++|+.+|
T Consensus 4 ~yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 4 RYDSRTTIFSPEGRLYQVEYAMEAIGH-AGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHHHHTT-SCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred ccCCCCccCCCCCeehHHHhHHHHHhc-CCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 899999999999999999999999995 99999999999999999999 33444455899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++.+++++|.|+|+++.|||++++||||||+++||+||++||+|++.+++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKAT 162 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999997578999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCc--eEEEcCHHHHHHHHHHh
Q 026064 165 SAGLKEQEAINFLEKKMKNDP-AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDR--VFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~-~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~--~~~~~~~~ev~~~~~~~ 240 (244)
|+|+|+++++++||++ |++ +||++||++++++||..+.++|..+ .+++|++|+++++ .|++++++||++++.++
T Consensus 163 aiGsgs~~a~~~Le~~--~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~ 240 (261)
T 1iru_C 163 CIGNNSAAAVSMLKQD--YKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKH 240 (261)
T ss_dssp EESTTTTHHHHHHHHH--CCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHH
T ss_pred EeCcccHHHHHHHHHh--hccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHH
Confidence 9999999999999999 567 9999999999999999999998765 4899999999875 38999999999999999
Q ss_pred hcc
Q 026064 241 SER 243 (244)
Q Consensus 241 ~~~ 243 (244)
.++
T Consensus 241 ~~~ 243 (261)
T 1iru_C 241 EEE 243 (261)
T ss_dssp HTT
T ss_pred Hhc
Confidence 754
No 7
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.7e-63 Score=418.44 Aligned_cols=226 Identities=35% Similarity=0.604 Sum_probs=210.0
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
++||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| .+++.+++.+||++|+++++++++|+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 84 (233)
T 1yar_A 6 MAYSRAITVFSPDGRLFQVEYAREAVKK-GSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVAD 84 (233)
T ss_dssp -------CCCCTTSCCHHHHHHHHHHTT-SCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHH
T ss_pred ccCCCCCceECcCCeeHHHHhHHHHHhc-CCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHH
Confidence 5999999999999999999999999996 99999999999999999999 66888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++++++++|.|+++++.|||++++||||||+ +||+||.+||+|++.+++++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~ 163 (233)
T 1yar_A 85 ARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKAT 163 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997 79999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHL 237 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~ 237 (244)
|+|+|++.++++||+. |+++||++||++++++||..+.++|+...+++|++|+++++ |++++++||+++|
T Consensus 164 aiG~gs~~a~~~Le~~--~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 164 AIGSGKDAVVSFLERE--YKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp EESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSC-CEECCHHHHHTTC
T ss_pred EEcCCcHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 9999999999999999 57899999999999999999999998656899999999975 9999999998753
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=2.3e-62 Score=415.56 Aligned_cols=232 Identities=37% Similarity=0.593 Sum_probs=216.5
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCccc-CCCceeeEEecCcEEEEEecChHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLD-QTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~-~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
+||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ..++. .++.+||++|+++++|+++|+.+|
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 79 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNAD 79 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHH
Confidence 699999999999999999999999996 99999999999999999999 44444 448999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCC-CCcEEEEECCCcceeeeeE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEE-KGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~-~gp~Ly~id~~G~~~~~~~ 163 (244)
++.|.++++.+++.|+++++++++++.+++++++++|.|+|++++|||++++||||||++ +||+||++||+|++.++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 80 SRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeee
Confidence 999999999999999999999999999999999999999999889999999999999975 7899999999999999999
Q ss_pred EEecCChHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 164 TSAGLKEQEAINFLEKKMKN-DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~-~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
+|+|+|++.++++||++|.. +++||++||++++++||..+.+ .+..+++|++|++++ +|++++++||++++.++.+
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~i~v~vi~~~~-~~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDS-DIVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTTEEEEEEETTT-EEEECCHHHHHHHHHHHTH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCcEEEEEEECCC-cEEECCHHHHHHHHHHHhh
Confidence 99999999999999998422 7899999999999999999986 555689999999987 4999999999999998865
Q ss_pred c
Q 026064 243 R 243 (244)
Q Consensus 243 ~ 243 (244)
+
T Consensus 237 ~ 237 (241)
T 1ryp_D 237 E 237 (241)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=3.3e-62 Score=415.76 Aligned_cols=231 Identities=35% Similarity=0.617 Sum_probs=217.8
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
++||+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|+| .+++.+++.+||++|+++++++++|+.+|
T Consensus 6 ~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD 84 (246)
T 1j2p_A 6 MGYDRAITVFSPDGRLFQVEYAREAVKR-GATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVAD 84 (246)
T ss_dssp TTSSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHH
T ss_pred cCcCCCCceECCCCeehHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHH
Confidence 3899999999999999999999999996 99999999999999999999 66777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++.+++++|.|+++++.|||++++|||||| +||+||.+||+|++.+++++
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~ 162 (246)
T 1j2p_A 85 ARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKAT 162 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEE
Confidence 9999999999999999999999999999999999999999999999999999999999 68999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEE-eCCceEEEcCHHHHHHHHHHhhcc
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVR-SDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~-~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
|+|+|++.++++||+. |+++||++||++++++||..+.++.....+++|++|+ +++ +|++++++||++++.++.++
T Consensus 163 aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~l~~~ei~~~~~~~~~~ 239 (246)
T 1j2p_A 163 AIGMGRMAVTEFFEKE--YRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDR-TFKEVSPEELKPYVERANER 239 (246)
T ss_dssp EESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTC-CCEECCHHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCC-ceEECCHHHHHHHHHHHHHH
Confidence 9999999999999999 5789999999999999999999883344589999999 655 59999999999999988653
No 10
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.7e-62 Score=419.29 Aligned_cols=233 Identities=32% Similarity=0.477 Sum_probs=217.8
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
+++||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ..++..++.+||++|++|++|+++|+.+
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 82 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAMKAVEN-SSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 82 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHH
T ss_pred ccccCCCCccCCcCCccHHHHhHHHHHhc-CCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChH
Confidence 45899999999999999999999999996 99999999999999999999 5555568899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|.++++.+++.|+++++++++++.+++++++++|.|+|++++|||++++||||||+++||+||++||+|++.++++
T Consensus 83 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~ 162 (254)
T 1iru_G 83 DARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWG 162 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999557999999999999999999
Q ss_pred EEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCc-eEEEcCHHHHHHHHHHhh
Q 026064 164 TSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDR-VFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~-~~~~~~~~ev~~~~~~~~ 241 (244)
+|+|+|++.++++||+. |+++||++||++++++||+.+.+++..+ .+++|++|+++.+ +|+++++++|+++++.+.
T Consensus 163 ~aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 163 CAIGKARQAAKTEIEKL--QMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp EEESTTHHHHHHHHTTS--CGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 99999999999999998 4679999999999999999998887644 4899999998733 499999999999998754
No 11
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2.1e-62 Score=415.81 Aligned_cols=234 Identities=31% Similarity=0.583 Sum_probs=215.3
Q ss_pred CCCCCCCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEE
Q 026064 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLA 78 (244)
Q Consensus 1 ~~~~~~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~ 78 (244)
|-|.. ++||+++|+|||||||+|||||.+|+++ |+|+|||+++||||||+|+| ..++.+++.+||++|++++++++
T Consensus 1 ~~m~~-~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~ 78 (241)
T 1iru_E 1 MFLTR-SEYDRGVNTFSPEGRLFQVEYDIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAM 78 (241)
T ss_dssp --------CCCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEE
T ss_pred CCCcc-CCCCCCCceECCCCccHHHHHHHHHHHc-CCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEE
Confidence 43433 6999999999999999999999999995 99999999999999999999 55555889999999999999999
Q ss_pred ecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCC-----CCcccceeEEEEEeCCCCcEEEEEC
Q 026064 79 TGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY-----MRPLGVVAMVLGIDEEKGPQLYKCD 153 (244)
Q Consensus 79 sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~ivaG~D~~~gp~Ly~id 153 (244)
+|+.+|++.|.++++.+++.|+++++++++++.+++.+++++|.|+++.+ .|||++++||||||+ +||+||.+|
T Consensus 79 aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~id 157 (241)
T 1iru_E 79 SGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMD 157 (241)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEEC
T ss_pred eeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999887 899999999999994 799999999
Q ss_pred CCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHH
Q 026064 154 PAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEI 233 (244)
Q Consensus 154 ~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev 233 (244)
|+|++.+++++|+|+|+++++++||+. |+++||++||++++++||..+.+++.+..+++|++|+++++ |++++++||
T Consensus 158 p~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~l~~~ei 234 (241)
T 1iru_E 158 PSGTFVQCDARAIGSASEGAQSSLQEL--YHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQN-FHMFTKEEL 234 (241)
T ss_dssp TTSCEEEBSEEEESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSC-CEECCHHHH
T ss_pred CCCcEEecceEEECCCcHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCC-eEECCHHHH
Confidence 999999999999999999999999999 57899999999999999999999955556899999999986 999999999
Q ss_pred HHHHHHh
Q 026064 234 DEHLTAI 240 (244)
Q Consensus 234 ~~~~~~~ 240 (244)
++++.++
T Consensus 235 ~~~~~~~ 241 (241)
T 1iru_E 235 EEVIKDI 241 (241)
T ss_dssp HHHHTTC
T ss_pred HHHHHhC
Confidence 9998754
No 12
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2e-62 Score=417.50 Aligned_cols=229 Identities=37% Similarity=0.596 Sum_probs=217.6
Q ss_pred CccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHH
Q 026064 9 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADAR 86 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 86 (244)
||+++|+|||||||||||||+||+++ |+|+|||+++||||||+|+| ..++..++.+||++|++|++|+++|+.+|++
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 81 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKK-GSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADAR 81 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHT-SCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHc-CCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHH
Confidence 99999999999999999999999996 99999999999999999999 5677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEe
Q 026064 87 SLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSA 166 (244)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~ 166 (244)
.|.++++.+++.|+++++++++++.+++++++++|.|+|+++.|||++++||||||+++||+||++||+|++.+++++|+
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ai 161 (248)
T 1iru_D 82 IVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAI 161 (248)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEE
Confidence 99999999999999999999999999999999999999998999999999999999557999999999999999999999
Q ss_pred cCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 167 GLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 167 G~g~~~~~~~Le~~~~~~~~~--s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
|+|++.++++||++ |+++| |++||++++++||..+.+ .+..+++|++|+++++ |++++++||++++.++.++
T Consensus 162 G~gs~~a~~~Le~~--~~~~m~~s~eea~~la~~al~~~~~--~sg~~i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 162 GRGAKSVREFLEKN--YTDEAIETDDLTIKLVIKALLEVVQ--SGGKNIELAVMRRDQS-LKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp STTHHHHHHHHTTT--CCSSTTCSHHHHHHHHHHHHHTTSC--TTSTTCCEEEEESSSC-EECCCHHHHHHHTTTTTTT
T ss_pred CCCcHHHHHHHHHh--hcccccCCHHHHHHHHHHHHHHHHc--CCCCcEEEEEEECCCc-EEECCHHHHHHHHHHHHhc
Confidence 99999999999998 57899 999999999999999986 3456899999999974 9999999999999988765
No 13
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=9.6e-62 Score=413.84 Aligned_cols=230 Identities=33% Similarity=0.537 Sum_probs=218.4
Q ss_pred CCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHH
Q 026064 8 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADA 85 (244)
Q Consensus 8 ~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 85 (244)
+||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ++++.+++.+||++|+++++|++||+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 82 (250)
T 1ryp_B 4 RYSFSLTTFSPSGKLGQIDYALTAVKQ-GVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDY 82 (250)
T ss_dssp CCCSBSSCBCTTSCBHHHHHHHHHHHT-SCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHH
T ss_pred cccCCceeECCCCccHHHHhHHHHHHc-CCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHH
Confidence 899999999999999999999999996 99999999999999999999 888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-hHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 86 RSLVHQARNEAAE-YRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 86 ~~l~~~~~~~~~~-~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
+.|.++++.+++. |++.++.+++++.+++.+++++|.++++.++|||++++||||||+++||+||++||+|++.+++++
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 162 (250)
T 1ryp_B 83 RVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKAT 162 (250)
T ss_dssp HHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeecee
Confidence 9999999999999 999999999999999999999999999988999999999999997678999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCC--------------ceEEEcCH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDD--------------RVFRVLSS 230 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~--------------~~~~~~~~ 230 (244)
|+|+|+++++++||+. |+++||++||++++++||..+.+++.+.++++|++|++++ +.|+++++
T Consensus 163 aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (250)
T 1ryp_B 163 AIGKGSVAAKTFLEKR--WNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS 240 (250)
T ss_dssp EESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCH
T ss_pred EecCccHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCH
Confidence 9999999999999999 5789999999999999999999887766699999999862 34999999
Q ss_pred HHHHHHHHHh
Q 026064 231 EEIDEHLTAI 240 (244)
Q Consensus 231 ~ev~~~~~~~ 240 (244)
+||++++.++
T Consensus 241 ~ei~~~l~~~ 250 (250)
T 1ryp_B 241 QEINDRLEAL 250 (250)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 14
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=6.1e-62 Score=413.19 Aligned_cols=230 Identities=28% Similarity=0.526 Sum_probs=217.7
Q ss_pred ccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHHHHH
Q 026064 10 DRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTADARS 87 (244)
Q Consensus 10 d~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 87 (244)
|+++|+|||||||||||||.+|+++ |+|+|||+++||||||+|+| ..++.+++.+||++|+++++|+++|+.+|++.
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~ 79 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKL-GSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTT-SCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHc-CCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHH
Confidence 7899999999999999999999996 99999999999999999999 55555788999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCC------CCcccceeEEEEEeCCCCcEEEEECCCcceeee
Q 026064 88 LVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAY------MRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH 161 (244)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~------~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~ 161 (244)
|.++++.+++.|+++++++++++.+++.+++++|.|+|+++ .|||++++||||||+++||+||++||+|++.++
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999988 899999999999996579999999999999999
Q ss_pred eEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 162 KATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 162 ~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
+++|+|+|+++++++||++ |+++||++||++++++||..+.+|+.+..+++|++|+++++ |++++++||+++++++.
T Consensus 160 ~~~aiGsgs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNE--WHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDG-FKIYDNEKTAELIKELK 236 (242)
T ss_dssp SEEEESTTHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTE-EEECCHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-eEECCHHHHHHHHHHHh
Confidence 9999999999999999999 57899999999999999999999955556899999999986 99999999999999987
Q ss_pred cc
Q 026064 242 ER 243 (244)
Q Consensus 242 ~~ 243 (244)
++
T Consensus 237 ~~ 238 (242)
T 1ryp_E 237 EK 238 (242)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 15
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=5e-62 Score=418.25 Aligned_cols=231 Identities=30% Similarity=0.551 Sum_probs=216.8
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
.+||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ..+. ++.+||++|+++++|+++|+.+|
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQ-GSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHH-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHc-CCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHH
Confidence 5899999999999999999999999996 99999999999999999999 4443 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++++++++|.|+|+++.|||++++||||||+ +||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcc--CCCCcEEEEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQED--FKATEIEVGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d--~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
|+|+|++.++++||+.|++.++||++||++++++||..+.+|| .+..+++|++|++++ +|++++++||++++.++.+
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~-~~~~l~~~ei~~~~~~~~~ 238 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL-EFTIYDDDDVSPFLEGLEE 238 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE-EEEEECSGGGHHHHTTCCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC-CeEECCHHHHHHHHHHHhc
Confidence 9999999999999999643238999999999999999999998 345689999999986 4999999999999998864
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=8.9e-62 Score=420.47 Aligned_cols=228 Identities=29% Similarity=0.495 Sum_probs=210.8
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
+++||+++|+|||+|||||||||.|||++ |+|+|||+++||||||+|+| ..++..++.+||++|++|++|+++|+.+
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~-GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~a 83 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 83 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhc-CCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHH
Confidence 67999999999999999999999999995 99999999999999999999 5566666889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|.++++.+++.|++++++++++..++++|++++|.||+++++|||+|++||||||+ +||+||++||+|++.++++
T Consensus 84 D~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~ 162 (288)
T 3nzj_F 84 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKG 162 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCE
Confidence 999999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred EEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEe-C-CceEEEcCHHHHHH
Q 026064 164 TSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRS-D-DRVFRVLSSEEIDE 235 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~-~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~-~-~~~~~~~~~~ev~~ 235 (244)
+|+|+|++.++++||++++ |+++||++||++++++||..+.+++..+ ..++|++|++ + ++.++.++.+++++
T Consensus 163 ~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~ 238 (288)
T 3nzj_F 163 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQE 238 (288)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHH
T ss_pred EEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHH
Confidence 9999999999999999854 6789999999999999999999998665 4899999999 4 43455666666554
No 17
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6.8e-61 Score=407.15 Aligned_cols=235 Identities=28% Similarity=0.463 Sum_probs=214.1
Q ss_pred CCCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChH
Q 026064 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTA 83 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~ 83 (244)
+++||+++|+|||||||||||||.||+++ |+|+|||+++||||||+|+| ..++..++.+||++|+++++|+++|+.+
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~a 79 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVEN-GTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIP 79 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHC-CCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHH
Confidence 45899999999999999999999999996 99999999999999999999 4555555669999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeE
Q 026064 84 DARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 84 D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~ 163 (244)
|++.|.++++.+++.|+++++++++++.+++++++++|.|||++++|||++++||||||+ +||+||++||+|++.++++
T Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~ 158 (244)
T 1ryp_G 80 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKG 158 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeE
Confidence 999999999999999999999999999999999999999999988999999999999996 7999999999999999999
Q ss_pred EEecCChHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEe-CCceEEEcCHHHHHHHHHHh
Q 026064 164 TSAGLKEQEAINFLEKKMK-NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRS-DDRVFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 164 ~a~G~g~~~~~~~Le~~~~-~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~-~~~~~~~~~~~ev~~~~~~~ 240 (244)
+|+|+|++.++++||+.++ |+++||++||++++++||..+.++|..+ .+++|++|++ +..+++++.++++-+..++.
T Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~ 238 (244)
T 1ryp_G 159 AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF 238 (244)
T ss_dssp EEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHH
T ss_pred EEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHH
Confidence 9999999999999999732 5678999999999999999999999875 4899999997 22247777778877766665
Q ss_pred hc
Q 026064 241 SE 242 (244)
Q Consensus 241 ~~ 242 (244)
+.
T Consensus 239 ~~ 240 (244)
T 1ryp_G 239 AQ 240 (244)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.9e-61 Score=408.01 Aligned_cols=225 Identities=28% Similarity=0.469 Sum_probs=209.3
Q ss_pred CCCccccceeCCCCcchhhhhHHHHHhccCceEEEEecCCeEEEEeecC--CCcccCCCceeeEEecCcEEEEEecChHH
Q 026064 7 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKK--DKLLDQTCVTHLFPITKYLGLLATGNTAD 84 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~--~~~~~~~~~~KI~~i~~~i~~~~sG~~~D 84 (244)
++||+++|+|||||||||||||+||+++ |+|+|||+++||||||+|+| ..+. ++.+||++|+++++++++|+.+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD 79 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQ-GSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPD 79 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHT-SCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHc-CCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHH
Confidence 3699999999999999999999999996 99999999999999999999 4443 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEE
Q 026064 85 ARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKAT 164 (244)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~ 164 (244)
++.|.++++.+++.|+++++++++++.+++.+++++|.|||+.+.|||++++||||||+ +||+||++||+|++.+++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 80 ARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999997 78999999999999999999
Q ss_pred EecCChHHHHHHHHhhccCCCCC--CHHHHHHHHHHHHHHhhhcc-C-CCCcEEEEEEEeCCceEEEcCHHHHHHHH
Q 026064 165 SAGLKEQEAINFLEKKMKNDPAF--SYEETVQTAVSALQSVLQED-F-KATEIEVGVVRSDDRVFRVLSSEEIDEHL 237 (244)
Q Consensus 165 a~G~g~~~~~~~Le~~~~~~~~~--s~~eai~la~~al~~~~~~d-~-~~~~iev~iv~~~~~~~~~~~~~ev~~~~ 237 (244)
|+|+|++.++++||++|++.++| |++||++++++||..+. +| . +..+++|++|+++++ |++++++||+++|
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEE-EEEEEGGGGGGGC
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCC-EEECCHHHHHhhC
Confidence 99999999999999996432389 99999999999999999 76 3 446899999999864 9999999998753
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.8e-52 Score=358.01 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=195.3
Q ss_pred eeCCCCcch-hhhhHHHHHhccCceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHH
Q 026064 15 IFSPEGRLF-QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQAR 93 (244)
Q Consensus 15 ~fsp~G~~~-Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~ 93 (244)
.|||||++. |||||.||+++ |+|+|||+++||||||+|+| +++.+||++|++|++|+++|+.+|++.|.++++
T Consensus 6 ~~sPe~~~~~qvEYA~~av~~-Gtt~vgi~~~dgVVlaaD~r-----s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~ 79 (259)
T 1q5q_A 6 YASAEQIMRDRSELARKGIAR-GRSVVVLTFRDGVLFVAENP-----STALHKVSELYDRLGFAAVGKYNEFENLRRAGI 79 (259)
T ss_dssp ---CHHHHHHHHHHHHHHHHT-SCCEEEEECSSEEEEEECCS-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCEEEEEEecC-----CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHH
Confidence 489999995 99999999996 99999999999999999999 367899999999999999999999999999999
Q ss_pred HHHHHhHHHcC-CCCCHHHHHHHHHH-HHHHhhhcCCCCcccceeEEEEEe--C-CCCcEEEEECCCccee-eeeEEEec
Q 026064 94 NEAAEYRFKFG-YEMPVDVLSRWIAD-KSQVYTQHAYMRPLGVVAMVLGID--E-EKGPQLYKCDPAGHFF-GHKATSAG 167 (244)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~la~~l~~-~~~~~t~~~~~rP~~v~~ivaG~D--~-~~gp~Ly~id~~G~~~-~~~~~a~G 167 (244)
.+++.|++.++ ++++++.+++++++ +.|.|+. +.|||+|++|||||| + ++||+||++||+|++. .++++|+|
T Consensus 80 ~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG 157 (259)
T 1q5q_A 80 VHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMG 157 (259)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEES
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEEC
Confidence 99999999988 49999999999999 6677873 689999999999999 3 4799999999999999 78999999
Q ss_pred CChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh-----hccCCCCcEEEEEEEeCC--ceEEEcCHHHHHHHHHHh
Q 026064 168 LKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVL-----QEDFKATEIEVGVVRSDD--RVFRVLSSEEIDEHLTAI 240 (244)
Q Consensus 168 ~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~-----~~d~~~~~iev~iv~~~~--~~~~~~~~~ev~~~~~~~ 240 (244)
+|++.++++||++ |+++||++||++++++||..+. +||+...+++|++|++++ ++|++++++||++++.++
T Consensus 158 ~gs~~a~~~Le~~--~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~ 235 (259)
T 1q5q_A 158 GTTEPIATAMRES--YRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAE 235 (259)
T ss_dssp SSHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC
T ss_pred CChHHHHHHHHhh--ccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHh
Confidence 9999999999998 6789999999999999999998 889855689999999985 249999999999998877
Q ss_pred hcc
Q 026064 241 SER 243 (244)
Q Consensus 241 ~~~ 243 (244)
.++
T Consensus 236 ~~~ 238 (259)
T 1q5q_A 236 PAA 238 (259)
T ss_dssp ---
T ss_pred hhc
Confidence 653
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.5e-50 Score=341.33 Aligned_cols=208 Identities=18% Similarity=0.256 Sum_probs=188.1
Q ss_pred hhhhHHHHHhccCceEEEEecCCeEEEEeecCCCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHc
Q 026064 24 QVEYAFKAVKATAITSIGVRGKDSVCVVTQKKDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKF 103 (244)
Q Consensus 24 Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 103 (244)
++|||.||+++ |+|+|||+++||||||+|+| +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.+
T Consensus 16 r~EYA~~av~~-GtT~vgi~~kdgVVlaadkr-----~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~ 89 (248)
T 3mi0_A 16 RSELARKGIAR-AKSVVALAYAGGVLFVAENP-----SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAY 89 (248)
T ss_dssp HHHHHHHHHHT-SCCEEEEEETTEEEEEEECC-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHhC-CCcEEEEEeCCEEEEEEeCC-----CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999995 99999999999999999999 4578999999999999999999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHH-HHHHHhhhcCCCCcccceeEEEEEeC---CCCcEEEEECCCcceee-eeEEEecCChHHHHHHH
Q 026064 104 G-YEMPVDVLSRWIA-DKSQVYTQHAYMRPLGVVAMVLGIDE---EKGPQLYKCDPAGHFFG-HKATSAGLKEQEAINFL 177 (244)
Q Consensus 104 ~-~~~~~~~la~~l~-~~~~~~t~~~~~rP~~v~~ivaG~D~---~~gp~Ly~id~~G~~~~-~~~~a~G~g~~~~~~~L 177 (244)
+ ++++++.|+++++ .+.|.|+| ++|||+|++||||||+ .+||+||++||+|++.+ ++++|+|+|++.++++|
T Consensus 90 ~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~L 167 (248)
T 3mi0_A 90 DRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANAL 167 (248)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHH
Confidence 9 8999999999999 77888987 6899999999999997 47999999999999995 99999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhh-------hccCCCCcEEEEEEEeCC--ceEEEcCHHHHHHHHHHhh
Q 026064 178 EKKMKNDPAFSYEETVQTAVSALQSVL-------QEDFKATEIEVGVVRSDD--RVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 178 e~~~~~~~~~s~~eai~la~~al~~~~-------~~d~~~~~iev~iv~~~~--~~~~~~~~~ev~~~~~~~~ 241 (244)
|++ |+++||++||++++++||..+. ++++...+|+|++|++++ +.|++++++||++++.++.
T Consensus 168 e~~--y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 168 KES--YAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp HHH--CCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred Hhh--cCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999 6789999999999999999999 677777899999999995 4699999999999988753
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-48 Score=325.08 Aligned_cols=201 Identities=25% Similarity=0.395 Sum_probs=187.7
Q ss_pred CceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 36 AITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 36 G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
|+|+|||+++||||||+|+| +.++.+++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 78999999999999999999 568888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeee-EEEecCChHHHHHHHHhhccCCCCCCHHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEE 191 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~e 191 (244)
++++++++|.+ +.|||++++||||||+++||+||++||+|++.+++ ++|+|+|+++++++||++ |+++||++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~--~~~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAG--YDRDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTS--CCTTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHh--cCCCCCHHH
Confidence 99999999875 36899999999999986789999999999999998 999999999999999998 678999999
Q ss_pred HHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhccC
Q 026064 192 TVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISERD 244 (244)
Q Consensus 192 ai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~~ 244 (244)
|++++++||..+.+||..+ ++++|++|+++ +|++++++||+++|.++++++
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~--g~~~l~~~ei~~~l~~~~~~~ 206 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKD--GVKIFEDEEIEKILDSMKAKP 206 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETT--EEEECCHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCC--CeEEcCHHHHHHHHHHhhccc
Confidence 9999999999999999876 58999999998 499999999999999998753
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.9e-47 Score=318.04 Aligned_cols=202 Identities=23% Similarity=0.390 Sum_probs=185.4
Q ss_pred HHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCC
Q 026064 30 KAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYE 106 (244)
Q Consensus 30 kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 106 (244)
+++++ |+|+|||+++||||||+|+| ++++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++++
T Consensus 3 ~~~~~-Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (217)
T 1yar_H 3 QTLET-GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVN 81 (217)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCC-CccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35664 99999999999999999999 678889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCC
Q 026064 107 MPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPA 186 (244)
Q Consensus 107 ~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 186 (244)
++++.+++.+++.++.+ +.|||++++|||||| +||+||++||+|++.+++++|+|+|+++++++||+. |+++
T Consensus 82 ~~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ 153 (217)
T 1yar_H 82 MPIEAVATLLSNMLNQV----KYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQ--YSEK 153 (217)
T ss_dssp CCHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhh--cccC
Confidence 99999999999999763 378999999999999 689999999999999999999999999999999999 5789
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 187 FSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 187 ~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
||++||++++++||..+.+||..+ ++++|++|+++. +|++++++||++++.+++
T Consensus 154 ~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~-g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 154 MTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD-GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCC-CEEEcCHHHHHHHHHHHH
Confidence 999999999999999999999765 589999999944 499999999999998875
No 23
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=8.9e-48 Score=333.43 Aligned_cols=231 Identities=15% Similarity=0.105 Sum_probs=175.2
Q ss_pred CCCCccccceeCCCCcc-----hh--hhhHHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEE
Q 026064 6 GAGYDRHITIFSPEGRL-----FQ--VEYAFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLG 75 (244)
Q Consensus 6 ~~~yd~~~t~fsp~G~~-----~Q--~eya~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~ 75 (244)
++.|+..+...+|+.-. +| +|||++ +++ |+|+|||+++||||||+|+| +.++.+++.+||++|+++++
T Consensus 22 ~~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~-GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~ 99 (291)
T 2jay_A 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPH-GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTA 99 (291)
T ss_dssp --------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEE
T ss_pred CccHHHHhhhcChhhccccccccCcCcccccc-ccC-CcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEE
Confidence 46788888888887543 33 689999 885 99999999999999999999 55788889999999999999
Q ss_pred EEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCC-----cEEE
Q 026064 76 LLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLY 150 (244)
Q Consensus 76 ~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~g-----p~Ly 150 (244)
|+++|+.+|++.|.++++.+++.|++.++++++++.+++.+++++|.+++ ..+|||+|++||||||++++ |+||
T Consensus 100 ~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly 178 (291)
T 2jay_A 100 TGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIV 178 (291)
T ss_dssp EEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEE
T ss_pred EEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999998875 35789999999999998555 9999
Q ss_pred EECCCccee--eeeEEEecCChHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCcE--------EEEEEEe
Q 026064 151 KCDPAGHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATEI--------EVGVVRS 220 (244)
Q Consensus 151 ~id~~G~~~--~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~i--------ev~iv~~ 220 (244)
++||+|++. +++++|+|+|+++++++||+. |+++||++||++++++||..+.++|+.++++ +|++|++
T Consensus 179 ~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~ 256 (291)
T 2jay_A 179 SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL--YSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA 256 (291)
T ss_dssp EECTTSCEEECSSSEEEESTTHHHHHHHHHHH--GGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEET
T ss_pred EECCCCcEEecCCCEEEEecCHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEEC
Confidence 999999999 889999999999999999999 5689999999999999999999999987766 5999999
Q ss_pred CCceEEEcCHHHHHHHHHHhhcc
Q 026064 221 DDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 221 ~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
+ +|++++++||++++.++.++
T Consensus 257 d--g~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 257 D--GAVDVPESRIAELARAIIES 277 (291)
T ss_dssp T--EEEECCHHHHHHHHHHC---
T ss_pred C--CeEEcCHHHHHHHHHHHHHh
Confidence 8 49999999999999998764
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.6e-47 Score=330.97 Aligned_cols=209 Identities=14% Similarity=0.186 Sum_probs=189.4
Q ss_pred hhHHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHH
Q 026064 26 EYAFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFK 102 (244)
Q Consensus 26 eya~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 102 (244)
.++.+++++ |+|+|||+++||||||+|+| +.++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++
T Consensus 66 ~~~~~~v~~-GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~ 144 (287)
T 3nzj_K 66 PDCKIKIAH-GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELR 144 (287)
T ss_dssp -----------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhecc-CceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 367889985 99999999999999999999 68888999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhcc
Q 026064 103 FGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK 182 (244)
Q Consensus 103 ~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~ 182 (244)
++++++++.+++++++++|.|++ +||++++||||||+++||+||++||+|++.+++++|+|+|+++++++||+.
T Consensus 145 ~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~-- 218 (287)
T 3nzj_K 145 EKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN-- 218 (287)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTS--
T ss_pred hCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHh--
Confidence 99999999999999999988754 499999999999966899999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 183 NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 183 ~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
|+++||++||++++++||..+.+||+.+ ++++|++|+++ +|++++++||++++.+++|+
T Consensus 219 y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd--g~~~l~~~ev~~~l~~~~e~ 278 (287)
T 3nzj_K 219 YKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED--GWIYHGNHDVGELFWKVKEE 278 (287)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT--EEEEEEEEEHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC--CEEEeCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999887 48999999998 49999999999999998875
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.2e-47 Score=329.44 Aligned_cols=210 Identities=18% Similarity=0.163 Sum_probs=195.2
Q ss_pred HHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcC
Q 026064 28 AFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFG 104 (244)
Q Consensus 28 a~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 104 (244)
|.||+++ |+|+|||+++||||||+|+| ++++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++
T Consensus 58 a~~Av~~-GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 58 SGDLAPH-GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp --CCSCB-CCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhc-CceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 8899995 99999999999999999999 6889899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCC-----cEEEEECCCcceeee--eEEEecCChHHHHHHH
Q 026064 105 YEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLYKCDPAGHFFGH--KATSAGLKEQEAINFL 177 (244)
Q Consensus 105 ~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~L 177 (244)
++++++.+++.|++++|.++++. +|||+|++||+|||++++ |+||++||+|++.++ +++|+|+|+++++++|
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 99999999999999999988764 899999999999998556 999999999999999 8999999999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 178 EKKMKNDPAFSYEETVQTAVSALQSVLQEDFKATE---I-----EVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 178 e~~~~~~~~~s~~eai~la~~al~~~~~~d~~~~~---i-----ev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
|++ |+++||++||++++++||..+.++|+.++. + +|++|+++ +|++++++||++++.++.++
T Consensus 216 e~~--y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~--g~~~l~~~ei~~~l~~i~~~ 285 (294)
T 1q5r_H 216 KKI--YSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA--GAVHVSEETTSELARRIVAE 285 (294)
T ss_dssp HHH--CCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT--EEEECCHHHHHHHHHHHCC-
T ss_pred HHh--ccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECC--CEEEcCHHHHHHHHHHHHHH
Confidence 998 578999999999999999999999987642 5 99999987 49999999999999998764
No 26
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-46 Score=311.00 Aligned_cols=196 Identities=24% Similarity=0.391 Sum_probs=185.3
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| ++++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5999999999999999999 6788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeee-EEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFSYEET 192 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 192 (244)
+++++.++.+ +.|||++++||||||+ +||+||++||+|++.+++ ++|+|+|+++++++||++ |+++||++||
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~--~~~~~s~eea 153 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDR--FTPEIGVDEA 153 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHH--CCTTCCHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhh--cCCCcCHHHH
Confidence 9999999763 3789999999999997 789999999999999999 999999999999999999 5789999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 193 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 193 i~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
++++++||..+.+||..+ ++++|++|+++ +|++++++||++++.+++
T Consensus 154 ~~la~~al~~~~~~d~~s~~~i~v~vi~~~--g~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 154 VELAVRAIYSAMKRDSASGDGIDVVKITED--EFYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHHTTCTTSCSCEEEEEECSS--CEEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEEeCC--CeEEeCHHHHHHHHHHhh
Confidence 999999999999999765 58999999998 399999999999998874
No 27
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.3e-46 Score=315.21 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=189.6
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| ++++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 5999999999999999999 6889899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCC-----cEEEEECCCcceeee--eEEEecCChHHHHHHHHhhccCCCC
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKG-----PQLYKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPA 186 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~g-----p~Ly~id~~G~~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~ 186 (244)
+.|++++|.++++. +|||++++||||||++++ |+||++||+|++.++ +++|+|+|+++++++||+. |+++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKI--YSPD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHH--CCTT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhh--cCCC
Confidence 99999999988764 899999999999998557 999999999999999 9999999999999999998 5789
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCc---E-----EEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 187 FSYEETVQTAVSALQSVLQEDFKATE---I-----EVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 187 ~s~~eai~la~~al~~~~~~d~~~~~---i-----ev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
||++||++++++||..+.++|+.+++ + +|++|+++ +|++++++||++++.++.++
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~--g~~~l~~~ei~~~~~~~~~~ 220 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA--GAVHVSEETTSELARRIVAE 220 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT--EEEECCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCC--CeEEeCHHHHHHHHHHHHHH
Confidence 99999999999999999999987653 2 99999987 49999999999999988764
No 28
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3e-46 Score=310.81 Aligned_cols=199 Identities=15% Similarity=0.205 Sum_probs=187.3
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| ++++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5999999999999999999 6888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+|.|+++ ||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||++ |+++||++||+
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN--YKWDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHH--CCTTCCHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhh--CCCCCCHHHHH
Confidence 9999999988753 99999999999965799999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
+++++||..+.+||..+ ++++|++|+++ +|++++++||++++.+++++
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~--g~~~~~~~ei~~~~~~~~~~ 203 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTED--GWIYHGNHDVGELFWKVKEE 203 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETT--EEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCC--ceEEECHHHHHHHHHHHHHh
Confidence 99999999999999765 58999999987 49999999999998887653
No 29
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=6.7e-46 Score=306.91 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=185.7
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5999999999999999999 5788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+|.|++ +||++++||||||+ +||+||++||+|++.+++++|+|+|+++++++||++ |+++||++||+
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~--~~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG--YSYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTT--CCTTCCHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhcc--CCCCCCHHHHH
Confidence 999999987643 59999999999997 799999999999999999999999999999999998 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
+++++||..+.+||..+ ++++|++|+++ +|+.++++||++++.++...
T Consensus 154 ~l~~~al~~~~~rd~~s~~~i~v~vi~~~--g~~~l~~~ei~~~~~~~~~~ 202 (204)
T 1iru_L 154 DLARRAIYQATYRDAYSGGAVNLYHVRED--GWIRVSSDNVADLHEKYSGS 202 (204)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEECSS--CEEEEEEEEHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEeCC--ceEEeCHHHHHHHHHHhccC
Confidence 99999999999999754 58999999987 49999999999999988653
No 30
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.9e-46 Score=310.42 Aligned_cols=196 Identities=15% Similarity=0.205 Sum_probs=184.2
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5999999999999999999 5588888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+|.|++ ||++++||||||+++||+||.+||+|++.+++++++|+|+++++++||++ |+++||++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~--~~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDAT--YREGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHH--CCTTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHh--cCCCCCHHHHH
Confidence 999999998754 99999999999976789999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHHH
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLTA 239 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~~ 239 (244)
+++++||..+.+||..+ ++++|++|++++..++.++++||++++++
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh
Confidence 99999999999999765 58999999999866899999999887654
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.3e-46 Score=317.30 Aligned_cols=201 Identities=13% Similarity=0.237 Sum_probs=187.0
Q ss_pred HHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHH-----
Q 026064 30 KAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF----- 101 (244)
Q Consensus 30 kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 101 (244)
+|+++ |+|+|||+++||||||+|+| +.++.+++.+||++|+++++|+++|+.+|++.|.++++.+++.|++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 3 QPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccccC-CceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 56775 99999999999999999999 6788888999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhc
Q 026064 102 KFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 181 (244)
Q Consensus 102 ~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~ 181 (244)
+++++++++.+++++++.+ |+++.++|||++++||||||+++||+||++||+|++.+++++|+|+|+++++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999999 55677789999999999999856999999999999999999999999999999999984
Q ss_pred cCCC-----CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHH
Q 026064 182 KNDP-----AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEH 236 (244)
Q Consensus 182 ~~~~-----~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~ 236 (244)
++ +||++||++++++||..+.+||+.+ .+++|++|++++ +++.++++||+++
T Consensus 160 --~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~-g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 --DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT-GLTFKKNLQVENM 217 (233)
T ss_dssp --SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT-EEEEEEEEECCSC
T ss_pred --ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCC-CeEEcChHhcccc
Confidence 56 8999999999999999999999875 589999999984 3999999888776
No 32
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.4e-46 Score=312.85 Aligned_cols=202 Identities=14% Similarity=0.209 Sum_probs=186.2
Q ss_pred HHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHH-HcCC
Q 026064 30 KAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRF-KFGY 105 (244)
Q Consensus 30 kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 105 (244)
+|+++ |+|+|||+++||||||+|+| +.++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|++ ++++
T Consensus 3 ~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 3 NPMVT-GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp SCCSE-ECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCccC-CceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56775 99999999999999999999 6888889999999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCC
Q 026064 106 EMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 185 (244)
Q Consensus 106 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 185 (244)
+++++.+++++++.+ |+++.++|||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+.|++.+
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999999 456667899999999999997 69999999999999999999999999999999999954323
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHH
Q 026064 186 AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHL 237 (244)
Q Consensus 186 ~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~ 237 (244)
+||++||++++++||..+.+||..+ ++++|++|++++ ++.++++||+..+
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g--~~~~~~~~i~~~~ 209 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG--VEIEGPLSTETNW 209 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE--EEEEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC--EEEcCCeeccchh
Confidence 9999999999999999999999875 589999999984 8999988876553
No 33
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.4e-44 Score=300.96 Aligned_cols=185 Identities=15% Similarity=0.245 Sum_probs=172.3
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
+|+|+|||+++||||||+|+| +.++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 8 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 87 (213)
T 1iru_M 8 NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGA 87 (213)
T ss_dssp CCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 599999999999999999999 55566678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhcc-------CC
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------ND 184 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~-------~~ 184 (244)
+++++++.+ |+++ .|||++++||||||++++|+||.+||+|++.+++++|+|+|+++++++||+.++ |+
T Consensus 88 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~ 163 (213)
T 1iru_M 88 IAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH 163 (213)
T ss_dssp HHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCC
T ss_pred HHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCC
Confidence 999999999 6655 789999999999997566999999999999999999999999999999999864 46
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCc
Q 026064 185 PAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDR 223 (244)
Q Consensus 185 ~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~ 223 (244)
++||++||++++++||..+.++|+.+ .+++|++|++++.
T Consensus 164 ~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~ 203 (213)
T 1iru_M 164 VPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGI 203 (213)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCe
Confidence 89999999999999999999999875 5899999999864
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1e-44 Score=300.08 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=176.6
Q ss_pred HHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCC
Q 026064 29 FKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGY 105 (244)
Q Consensus 29 ~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (244)
.||+++ |+|+|||+++||||||+|+| +.++..++.+||++|++|++++++|+.+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~-Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (205)
T 1ryp_H 3 KGEVSL-GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT 81 (205)
T ss_dssp TTCCBC-CCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCcC-CceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467885 99999999999999999999 55888889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCC
Q 026064 106 EMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 185 (244)
Q Consensus 106 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 185 (244)
++++.+++++++.+|.|+++ |++++||||||+++||+||.+||+|++.+++++|+|+|++.++++||++ |++
T Consensus 82 -~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~ 153 (205)
T 1ryp_H 82 -PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN--FRE 153 (205)
T ss_dssp -CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHH--CCT
T ss_pred -CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhc--cCC
Confidence 99999999999999988652 8999999999976789999999999999999999999999999999999 578
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEc
Q 026064 186 AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVL 228 (244)
Q Consensus 186 ~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~ 228 (244)
+||++||++++++||..+.+||..+ ++++|++|++++...+.+
T Consensus 154 ~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~ 197 (205)
T 1ryp_H 154 NMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197 (205)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence 9999999999999999999999865 589999999997533334
No 35
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=5.7e-46 Score=318.99 Aligned_cols=207 Identities=13% Similarity=0.224 Sum_probs=189.2
Q ss_pred hhhhHHHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhH
Q 026064 24 QVEYAFKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYR 100 (244)
Q Consensus 24 Q~eya~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 100 (244)
..+.+++++++ |+|+|||+++||||||+|+| +.++.+++.+||++|+++++|+++|+.+|++.|.+++|.+++.|+
T Consensus 30 ~~~~~~~av~~-GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~ 108 (266)
T 1g0u_M 30 PMVNTQQPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA 108 (266)
T ss_dssp ----CCCCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccCccc-CceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh
Confidence 35667888985 99999999999999999999 678888899999999999999999999999999999999999999
Q ss_pred H-----HcCCCCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHH
Q 026064 101 F-----KFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAIN 175 (244)
Q Consensus 101 ~-----~~~~~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~ 175 (244)
+ +++++++++.+++++++.+ |+++.++|||++++||||||+++||+||.+||+|++.+++++|+|+|+.++++
T Consensus 109 ~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 186 (266)
T 1g0u_M 109 YDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANP 186 (266)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHH
T ss_pred hccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHH
Confidence 8 8999999999999999999 55677789999999999999856999999999999999999999999999999
Q ss_pred HHHhhccCCC-----CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHH
Q 026064 176 FLEKKMKNDP-----AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEH 236 (244)
Q Consensus 176 ~Le~~~~~~~-----~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~ 236 (244)
+||+.| ++ +||++||++++++||..+.+||+.+ .+++|++|++++ +|++++++||+++
T Consensus 187 ~Le~~~--~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~-g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 187 LLRKVV--DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNT-GLTFKKNLQVENM 250 (266)
T ss_dssp HHTTTC--SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTT-EEEEEEEEECCCC
T ss_pred HHHHhh--cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCC-CeEEcCHHHhhhh
Confidence 999984 56 8999999999999999999999875 589999999984 3999998888766
No 36
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=4.3e-44 Score=305.96 Aligned_cols=190 Identities=18% Similarity=0.228 Sum_probs=171.7
Q ss_pred HHHHhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCC
Q 026064 29 FKAVKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGY 105 (244)
Q Consensus 29 ~kav~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 105 (244)
.||+++ |+|+|||+++||||||+|+| +.++..++.+||++|++|++|+++|+.+|++.+.++++.+++.|++++++
T Consensus 23 ~kav~~-GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 23 PKATST-GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred Cccccc-CceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 688985 99999999999999999999 67888899999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCC
Q 026064 106 EMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP 185 (244)
Q Consensus 106 ~~~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 185 (244)
++++..+++++++.++.| .+||++++||||||+ .||+||++||+|++.+++++|+|+|++.++++||++ |++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~ 173 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESH--WKQ 173 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHH--CCS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHH--hcc
Confidence 999999999999988643 369999999999998 789999999999999999999999999999999999 678
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEc
Q 026064 186 AFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVL 228 (244)
Q Consensus 186 ~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~ 228 (244)
+||+|||++++++||..+.+||+.+ .+++|++|+++++ ++.+
T Consensus 174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~-~~~~ 216 (261)
T 3nzj_H 174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYL 216 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCc-EEEe
Confidence 9999999999999999999999865 5899999999974 5443
No 37
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.3e-44 Score=298.79 Aligned_cols=187 Identities=20% Similarity=0.344 Sum_probs=173.1
Q ss_pred HhccCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcC-CCC
Q 026064 32 VKATAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFG-YEM 107 (244)
Q Consensus 32 v~~~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~ 107 (244)
++ +|+|+|||+++||||||+|+| +.++.+++.+||++|+++++++++|+.+|++.|.++++.+++.|+++++ +++
T Consensus 6 v~-~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 6 GD-NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CC-CCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cc-CCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 44 599999999999999999999 5556778999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhcc-----
Q 026064 108 PVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK----- 182 (244)
Q Consensus 108 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~----- 182 (244)
+++.+++++++.+ |+++ .+||++++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.++
T Consensus 85 ~v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999998 4443 679999999999997567999999999999999999999999999999999864
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCc
Q 026064 183 ----------NDPAFSYEETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDR 223 (244)
Q Consensus 183 ----------~~~~~s~~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~ 223 (244)
|+++||++||++++++||..+.+||+.+ ++++|++|++++.
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCe
Confidence 6789999999999999999999999875 5899999999864
No 38
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5.7e-44 Score=293.99 Aligned_cols=188 Identities=17% Similarity=0.227 Sum_probs=173.9
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++.+++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6999999999999999999 5556577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeC-CCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEET 192 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 192 (244)
+.+++.++.+++. ++||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||+. |+++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~--~~~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHH--YRPDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHH--CCTTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhh--cCCCCCHHHH
Confidence 9999999887632 359999999999996 4789999999999999999999999999999999999 5789999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCH
Q 026064 193 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSS 230 (244)
Q Consensus 193 i~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~ 230 (244)
++++++||..+.+||..+ ++++|++|+++ +++++++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~--g~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKD--GIRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETT--EEEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCC--CEEEecc
Confidence 999999999999999765 58999999998 4887765
No 39
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.3e-44 Score=297.97 Aligned_cols=193 Identities=17% Similarity=0.194 Sum_probs=178.8
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
||+|||+++||||||+|+| +.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 6999999999999999999 6688889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeee-eEEEecCChHHHHHHHHhhccCCCCCCHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSYEET 192 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~~ea 192 (244)
+++++.++.+ .|||++++||||||++++|+||+ |+|++..+ +++++|+|+++++++||++ |+++||++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~--~~~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAA--YKPGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHH--CCSSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhh--cCCCCCHHHH
Confidence 9999999754 46999999999999867899999 99998766 5666799999999999999 5789999999
Q ss_pred HHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 193 VQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 193 i~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
++++++||..+.+||+.+ ++++|++|++++..|+.++++||+++++
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 198 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYD 198 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCccccc
Confidence 999999999999999876 5899999999987799999999987653
No 40
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=4.8e-44 Score=301.43 Aligned_cols=188 Identities=20% Similarity=0.288 Sum_probs=175.3
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
||+|||+++||||||+|+| +.++..++.+||++|++|++|+++|+.+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 6999999999999999999 5566678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.++.| .+||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+. |+++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDR--FQPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHH--CCSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhc--cCCCCCHHHHH
Confidence 9999999754 369999999999997 799999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCHHHHH
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSSEEID 234 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~~ev~ 234 (244)
+++++||..+..+|+.+ ++++|++|++++ |+.+++.+++
T Consensus 153 ~la~~al~~~~~~D~~sg~~iev~vi~~dg--~~~l~~~~i~ 192 (234)
T 3unf_H 153 ELLVEAITAGILSDLGSGGNVDACVITAGG--AKLQRALSTP 192 (234)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEESSC--EEEEEEEECC
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEECCC--EEEeCceecc
Confidence 99999999999999865 589999999994 8888877654
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.9e-43 Score=290.50 Aligned_cols=189 Identities=17% Similarity=0.263 Sum_probs=172.2
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
+|+|+|||+++||||||+|+| +.++..++.+||++|++|++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 86 (205)
T 1iru_J 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYT 86 (205)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Confidence 599999999999999999999 55555568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeC-CCCcEEEEECCCcceeee-eEEEecCChHHHHHHHHhhccCCCCCCH
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSY 189 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~ 189 (244)
+++++++.+ |+++ ..||++++||||||+ ++||+||++||+|++.++ +++|+|+|+++++++||+. |+++||+
T Consensus 87 la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~--~~~~~s~ 160 (205)
T 1iru_J 87 LMSMVANLL--YEKR--FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESL--WEPNMDP 160 (205)
T ss_dssp HHHHHHHHH--HTTT--TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHH--CCSSCCH
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcc--cCCCCCH
Confidence 999999999 6665 349999999999995 478999999999999665 6799999999999999999 5789999
Q ss_pred HHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 026064 190 EETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 190 ~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~ 229 (244)
+||++++++||..+.++|+.+ .+++|++|++++..++.++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEee
Confidence 999999999999999999875 5899999999976555543
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.2e-42 Score=287.41 Aligned_cols=188 Identities=19% Similarity=0.221 Sum_probs=171.2
Q ss_pred cCceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDV 111 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 111 (244)
+|+|+|||+++||||||+|+| +.++..++.+||++|+ +++++++|+.+|++.|.++++.+++.|+++++++++++.
T Consensus 7 ~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~ 85 (204)
T 1ryp_J 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPET 85 (204)
T ss_dssp SCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 599999999999999999999 5555556899999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcccceeEEEEEeC-CCCcEEEEECCCcceeee-eEEEecCChHHHHHHHHhhccCCCCCCH
Q 026064 112 LSRWIADKSQVYTQHAYMRPLGVVAMVLGIDE-EKGPQLYKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFSY 189 (244)
Q Consensus 112 la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~-~~gp~Ly~id~~G~~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~s~ 189 (244)
+++++++.+ |+++.+ ||++++||||||+ ++||+||.+||+|++.++ +++|+|+|+++++++||+. |+++||+
T Consensus 86 la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~--~~~~~s~ 159 (204)
T 1ryp_J 86 FTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESL--YEPNLEP 159 (204)
T ss_dssp HHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHH--CCSSCCH
T ss_pred HHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhh--cCCCcCH
Confidence 999999999 776643 9999999999996 478999999999999666 6799999999999999999 5789999
Q ss_pred HHHHHHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 026064 190 EETVQTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 190 ~eai~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~ 229 (244)
+||++++++||..+.++|..+ ++++|++|++++..++.++
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~ 200 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEee
Confidence 999999999999999999765 5899999999986555443
No 43
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=8.1e-43 Score=287.78 Aligned_cols=187 Identities=18% Similarity=0.293 Sum_probs=171.5
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6999999999999999999 5788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.+... .+ ..|||++++||||||+++||+||.+||+|++.+++++|+|+|+++++++||+. |+++||++||+
T Consensus 82 ~~~~~~l~~~-~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLADC-LR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRY--YTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHH-HT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHH--CCTTCCHHHHH
T ss_pred HHHHHHHHHH-Hh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhc--ccCCCCHHHHH
Confidence 9998766322 12 23799999999999976789999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~ 229 (244)
+++++||..+.+||+.+ ++++|++|++++ +++++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g--~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG--IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE--EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC--eEEee
Confidence 99999999999999876 489999999984 66655
No 44
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.5e-42 Score=290.45 Aligned_cols=184 Identities=18% Similarity=0.230 Sum_probs=171.1
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++..++.+||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5999999999999999999 5667778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.++.| .|||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+. |+++||++||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESH--WKQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHH--CCSSCCHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhh--CCCCcCHHHHH
Confidence 9999998754 479999999999998 789999999999999999999999999999999999 57899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcC
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLS 229 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~ 229 (244)
+++++||..+.+||+.+ ++++|++|+++++ ++.+.
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~-~~~~~ 188 (222)
T 1ryp_I 153 KLASDAIQAGIWNDLGSGSNVDVCVMEIGKD-AEYLR 188 (222)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEEETTSC-EEEEE
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEECCCC-EEEEe
Confidence 99999999999999875 5899999999863 66543
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.7e-41 Score=286.05 Aligned_cols=184 Identities=18% Similarity=0.236 Sum_probs=170.3
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEecCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLS 113 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la 113 (244)
+|+|||+++||||||+|+| +.++..++.+||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5999999999999999999 4556667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeeeEEEecCChHHHHHHHHhhccCCCCCCHHHHH
Q 026064 114 RWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFSYEETV 193 (244)
Q Consensus 114 ~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~s~~eai 193 (244)
+++++.++.| .+||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+. |+++||++||+
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~--~~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDK--FRPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHS--CCTTCCHHHHH
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHh--ccCCCCHHHHH
Confidence 9999998764 359999999999997 789999999999999999999999999999999998 67899999999
Q ss_pred HHHHHHHHHhhhccCCC-CcEEEEEEEeCCceEEEcCH
Q 026064 194 QTAVSALQSVLQEDFKA-TEIEVGVVRSDDRVFRVLSS 230 (244)
Q Consensus 194 ~la~~al~~~~~~d~~~-~~iev~iv~~~~~~~~~~~~ 230 (244)
+++++||..+.++|+.+ ++++|++|++++ ++.+.+
T Consensus 153 ~la~~al~~a~~~d~~sg~~i~v~vi~k~g--~~~~~~ 188 (234)
T 1iru_I 153 NLVSEAIAAGIFNDLGSGSNIDLCVISKNK--LDFLRP 188 (234)
T ss_dssp THHHHHHHHHHHHCTTCCSCEEEEEEETTE--EECCSE
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEECCc--EEEEcc
Confidence 99999999999999875 589999999984 665543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.4e-35 Score=240.54 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=146.9
Q ss_pred cCceEEEEecCCeEEEEeecC---CCc-ccCCCceeeEEe-cCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCH
Q 026064 35 TAITSIGVRGKDSVCVVTQKK---DKL-LDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPV 109 (244)
Q Consensus 35 ~G~t~vgi~~~dgVvla~d~~---~~~-~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (244)
+|+|+|||+++||||||+|+| +.+ +.+++.+||++| ++|++++++|..+|++.|.++++.+++.|+ +
T Consensus 4 ~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g----- 75 (180)
T 2z3b_A 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G----- 75 (180)
T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T-----
T ss_pred CCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C-----
Confidence 599999999999999999999 678 899999999999 999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceee--eeEEEecCChHHHHHHHHhhccCCC--
Q 026064 110 DVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFG--HKATSAGLKEQEAINFLEKKMKNDP-- 185 (244)
Q Consensus 110 ~~la~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~--~~~~a~G~g~~~~~~~Le~~~~~~~-- 185 (244)
.+.+.++++.+.++++...|||++++||+ | +|+||++||+|++.+ ++++|+|+|+++++++||+.| ++
T Consensus 76 -~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~--~~~~ 147 (180)
T 2z3b_A 76 -NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK--KHAG 147 (180)
T ss_dssp -CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH--HHHG
T ss_pred -ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhh--hccC
Confidence 23444455666677788889999999999 4 699999999999998 499999999999999999995 45
Q ss_pred -CCCHHHHHHHHHHHHHHhhhccCCCC-cEEEEEE
Q 026064 186 -AFSYEETVQTAVSALQSVLQEDFKAT-EIEVGVV 218 (244)
Q Consensus 186 -~~s~~eai~la~~al~~~~~~d~~~~-~iev~iv 218 (244)
+||.|| ++.+||+.+.+||+.++ +++|.+|
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence 899999 46799999999999875 8999887
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=4.4e-35 Score=235.68 Aligned_cols=164 Identities=14% Similarity=0.126 Sum_probs=142.7
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEe-cCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
+|+|||+++||||||+|+| +.++.+++.+||++| +++++++++|+.+|++.|.++++.+++.|+++ +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------H
Confidence 5999999999999999999 678889999999999 99999999999999999999999999998744 2
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeee--EEEecCChHHHHHHHHhhccCCCCCCHH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFSYE 190 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~--~~a~G~g~~~~~~~Le~~~~~~~~~s~~ 190 (244)
.+.++++.+.++++...|||++++|++ | ||+||++||+|++.+++ ++|+|+|+++++++||+.|++ ++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~- 144 (171)
T 1m4y_A 72 TKAAVELAKDWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA- 144 (171)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH-
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH-
Confidence 334444455566666678999998888 5 79999999999999987 999999999999999999532 78986
Q ss_pred HHHHHHHHHHHHhhhccCCC-CcEEEEEE
Q 026064 191 ETVQTAVSALQSVLQEDFKA-TEIEVGVV 218 (244)
Q Consensus 191 eai~la~~al~~~~~~d~~~-~~iev~iv 218 (244)
.+++++||+.+.+||..+ ++++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999886 47888753
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=7.6e-35 Score=234.96 Aligned_cols=165 Identities=15% Similarity=0.081 Sum_probs=144.2
Q ss_pred ceEEEEecCCeEEEEeecC---CCcccCCCceeeEEe-cCcEEEEEecChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHH
Q 026064 37 ITSIGVRGKDSVCVVTQKK---DKLLDQTCVTHLFPI-TKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVL 112 (244)
Q Consensus 37 ~t~vgi~~~dgVvla~d~~---~~~~~~~~~~KI~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 112 (244)
+|+|||+++||||||+|+| +.++.+++.+||++| ++|++++++|+.+|++.|.++++.+++.|++ + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 5999999999999999999 568889999999999 9999999999999999999999999999975 2 3
Q ss_pred HHHHHHHHHHhhhcCCCCcccceeEEEEEeCCCCcEEEEECCCcceeeee---EEEecCChHHHHHHHHhhccCCCCCCH
Q 026064 113 SRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFSY 189 (244)
Q Consensus 113 a~~l~~~~~~~t~~~~~rP~~v~~ivaG~D~~~gp~Ly~id~~G~~~~~~---~~a~G~g~~~~~~~Le~~~~~~~~~s~ 189 (244)
.+.++.+.+.+++++..||+ .++++|+| +|+||++||+|++.+++ ++|+|+|+++++++||+.|++ ++||.
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCH
T ss_pred HHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCH
Confidence 44555556666777777775 46778887 69999999999999988 999999999999999999531 78985
Q ss_pred HHHHHHHHHHHHHhhhccCCC-CcEEEEEEE
Q 026064 190 EETVQTAVSALQSVLQEDFKA-TEIEVGVVR 219 (244)
Q Consensus 190 ~eai~la~~al~~~~~~d~~~-~~iev~iv~ 219 (244)
+ +++++||+.+.+||..+ ++++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 4 79999999999999876 589999985
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=61.76 E-value=18 Score=26.20 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=26.8
Q ss_pred CCcEEEEEEEeCCce-EEEcCHHHHHHHHHHhhc
Q 026064 210 ATEIEVGVVRSDDRV-FRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 210 ~~~iev~iv~~~~~~-~~~~~~~ev~~~~~~~~~ 242 (244)
++.+-|.+++++++. ++.++++++-++...+.+
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 457889999998764 689999999888877654
No 50
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=45.57 E-value=6.6 Score=28.47 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=14.5
Q ss_pred CCCccccceeCCCCcch
Q 026064 7 AGYDRHITIFSPEGRLF 23 (244)
Q Consensus 7 ~~yd~~~t~fsp~G~~~ 23 (244)
.+-|+.+|.|+|+||+.
T Consensus 53 ~gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 53 MFMRHRVTFFNATGRYI 69 (138)
T ss_dssp TTCEEEEEEECTTSCEE
T ss_pred CcceeEEEEEcCCCcEE
Confidence 46789999999999875
No 51
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=43.62 E-value=37 Score=23.65 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=22.1
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhhc
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~~~ 242 (244)
|.+.+++.+.|+.+++++|.+++..-..
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rKn 58 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRKN 58 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHHT
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcCC
Confidence 5677776667999999999999875443
No 52
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=40.39 E-value=17 Score=29.28 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=28.0
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecCCe
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDS 47 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~dg 47 (244)
|.||+||....-|++..|.++ |-+.|+|+=.+-
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~-Gl~~iaiTDH~~ 40 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAK-GLKGVVFTDHSP 40 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHT-TCSEEEEEEECC
T ss_pred cCCCCCCCCCHHHHHHHHHHc-CCCEEEEcCCCC
Confidence 579999999988999999995 999999876543
No 53
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.96 E-value=40 Score=24.33 Aligned_cols=29 Identities=10% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhhcc
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAISER 243 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~~~~ 243 (244)
|.+.+++++.|+.+++++|.+++..-..|
T Consensus 28 I~W~~~~~g~Fklvdp~~VArlWG~rKnk 56 (118)
T 2dao_A 28 IRWEDKESKIFRIVDPNGLARLWGNHKNR 56 (118)
T ss_dssp EEEEEGGGTEEEESCHHHHHHHHHHHTTC
T ss_pred eEeeCCCCCeEEEeCHHHHHHHHHhccCC
Confidence 77888886679999999999998754443
No 54
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=36.98 E-value=27 Score=26.83 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=27.2
Q ss_pred cceeCCCCcch-hhhhHHHHHhccCceEEEEec
Q 026064 13 ITIFSPEGRLF-QVEYAFKAVKATAITSIGVRG 44 (244)
Q Consensus 13 ~t~fsp~G~~~-Q~eya~kav~~~G~t~vgi~~ 44 (244)
+-+||+.|+=- -+|-|.++-++ |.++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~-G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAW-HTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHH-TCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHC-CCcEEEEeC
Confidence 34899999877 89999999996 999999988
No 55
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=32.73 E-value=66 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.0
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
|.+++++.+.|+.++|++|..+...-.
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~rK 51 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQKK 51 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHHT
T ss_pred cccccCCCceEEecCHHHHHHHHHhcc
Confidence 778887766799999999999877543
No 56
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=32.63 E-value=29 Score=22.96 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=24.6
Q ss_pred CccccceeCCCCcchh-------hhhHHHHHhccCceEEEEecCCeEEEE
Q 026064 9 YDRHITIFSPEGRLFQ-------VEYAFKAVKATAITSIGVRGKDSVCVV 51 (244)
Q Consensus 9 yd~~~t~fsp~G~~~Q-------~eya~kav~~~G~t~vgi~~~dgVvla 51 (244)
|...+.+|+|+|.++. .+.|..--..-|..++|.+-+ |-++.
T Consensus 4 ~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-G~~v~ 52 (78)
T 3hvz_A 4 APEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-GRIVP 52 (78)
T ss_dssp --CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-TEEEC
T ss_pred cCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-CEEcC
Confidence 4557889999999985 344433322224567887774 44433
No 57
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=32.07 E-value=68 Score=21.82 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCceEEEcCHHHHHHHHH
Q 026064 184 DPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDRVFRVLSSEEIDEHLT 238 (244)
Q Consensus 184 ~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~~~~~~~~~ev~~~~~ 238 (244)
.++++.++..+..+..++.. ....+.+.+++.+|..+.+.+.+|+++-++
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFR 72 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHH
Confidence 45789999888877755432 124699999999887688899999988766
No 58
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=27.00 E-value=59 Score=23.04 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEEeCCceEEEcCHHHHHHHHHHhh
Q 026064 215 VGVVRSDDRVFRVLSSEEIDEHLTAIS 241 (244)
Q Consensus 215 v~iv~~~~~~~~~~~~~ev~~~~~~~~ 241 (244)
|.+.+++.+.|+.+++++|.+++..-.
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~rK 55 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQRK 55 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhcC
Confidence 567787655799999999999876543
No 59
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=26.32 E-value=80 Score=19.24 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=24.0
Q ss_pred HHHHHHHhhccCCCCCCH--HHHHHHHHHHHHHhhhccC
Q 026064 172 EAINFLEKKMKNDPAFSY--EETVQTAVSALQSVLQEDF 208 (244)
Q Consensus 172 ~~~~~Le~~~~~~~~~s~--~eai~la~~al~~~~~~d~ 208 (244)
.+..+|..... ...++. .|-++.|++||..+.+-+.
T Consensus 8 sIi~FL~~~~~-~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLR-HGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcc-cCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 34556665542 344555 5689999999999986543
No 60
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=24.08 E-value=1.1e+02 Score=21.03 Aligned_cols=35 Identities=9% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHhhccCCCCCCH--HHHHHHHHHHHHHhhhcc
Q 026064 172 EAINFLEKKMKNDPAFSY--EETVQTAVSALQSVLQED 207 (244)
Q Consensus 172 ~~~~~Le~~~~~~~~~s~--~eai~la~~al~~~~~~d 207 (244)
.+..+|..... ...++. .|-++.|++||..+.+-+
T Consensus 25 sIIdFL~~sv~-~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 34556655542 455666 568899999999998643
No 61
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=23.71 E-value=82 Score=23.92 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=24.9
Q ss_pred cceeCCCCcchhhhhHHHHHhccCceEEEEecC
Q 026064 13 ITIFSPEGRLFQVEYAFKAVKATAITSIGVRGK 45 (244)
Q Consensus 13 ~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~ 45 (244)
+-.||..|+-..+--+.+..++.|.++|+|+..
T Consensus 117 vI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~ 149 (199)
T 1x92_A 117 LLAISTSGNSANVIQAIQAAHDREMLVVALTGR 149 (199)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 346888888777766777766679899988875
No 62
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=23.51 E-value=83 Score=23.76 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=25.4
Q ss_pred cceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 13 ITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 13 ~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
+-.||..|+-..+--+.+..++.|.++|+|+...
T Consensus 113 vI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~ 146 (196)
T 2yva_A 113 LLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3467888887777777777776798898888764
No 63
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=22.64 E-value=55 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=26.0
Q ss_pred ceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 14 TIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 14 t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
|.||++|....-|++..|.++ |-..|+|+=.+
T Consensus 10 t~~Sd~g~~~~~e~v~~A~~~-Gl~~iaiTDH~ 41 (245)
T 1m65_A 10 TVASTHAYSTLSDYIAQAKQK-GIKLFAITDHG 41 (245)
T ss_dssp CTTSTTCCCCHHHHHHHHHHH-TCCEEEEEEEC
T ss_pred CCCCCCCCCcHHHHHHHHHHC-CCCEEEECCCC
Confidence 568888876667999999985 99999997654
No 64
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.73 E-value=23 Score=21.99 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.2
Q ss_pred EEEcCHHHHHHHHHHhhc
Q 026064 225 FRVLSSEEIDEHLTAISE 242 (244)
Q Consensus 225 ~~~~~~~ev~~~~~~~~~ 242 (244)
|+=++++||+.||.++++
T Consensus 17 ~rGY~~~EVD~FLd~v~~ 34 (57)
T 2wuj_A 17 FRGYDEDEVNEFLAQVRK 34 (57)
T ss_dssp TTEEEHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 556899999999998865
No 65
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=21.41 E-value=86 Score=24.26 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=23.8
Q ss_pred cceeCCCCcchhhhhHHHHHhccCceEEEEecC
Q 026064 13 ITIFSPEGRLFQVEYAFKAVKATAITSIGVRGK 45 (244)
Q Consensus 13 ~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~ 45 (244)
+=.||..|+--.+--+.+..++.|.++|+|+..
T Consensus 135 vI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~ 167 (212)
T 2i2w_A 135 LLGISTSGNSANVIKAIAAAREKGMKVITLTGK 167 (212)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHHTCEEEEEEET
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 345788888776666666666568899888875
No 66
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=21.14 E-value=1.5e+02 Score=19.47 Aligned_cols=35 Identities=9% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHhhccCCCCCCH--HHHHHHHHHHHHHhhhcc
Q 026064 172 EAINFLEKKMKNDPAFSY--EETVQTAVSALQSVLQED 207 (244)
Q Consensus 172 ~~~~~Le~~~~~~~~~s~--~eai~la~~al~~~~~~d 207 (244)
.+..+|..... ...++. .|-++.|++||..+.+-+
T Consensus 13 sIi~FL~~~~~-~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 44556665542 345666 568899999999998654
No 67
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=21.07 E-value=1e+02 Score=22.95 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=26.6
Q ss_pred ccceeCCCCcchhhhhHHHHHhccCceEEEEecCC
Q 026064 12 HITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKD 46 (244)
Q Consensus 12 ~~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~d 46 (244)
-+-.||..|+-..+--+.+..++.|.++|+|+...
T Consensus 82 ~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 82 LVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45578999988777666666666799999998753
No 68
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.76 E-value=1e+02 Score=23.20 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=22.4
Q ss_pred cceeCCCCcchhhhhHHHHHhccCceEEEEecC
Q 026064 13 ITIFSPEGRLFQVEYAFKAVKATAITSIGVRGK 45 (244)
Q Consensus 13 ~t~fsp~G~~~Q~eya~kav~~~G~t~vgi~~~ 45 (244)
+-.||..|+-..+--+.+..++.|.++|+|+..
T Consensus 120 vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~ 152 (198)
T 2xbl_A 120 LIGYSTSGKSPNILAAFREAKAKGMTCVGFTGN 152 (198)
T ss_dssp EEEECSSSCCHHHHHHHHHHHHTTCEEEEEECS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 345777777666555656555568888888765
No 69
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=20.57 E-value=1.5e+02 Score=23.10 Aligned_cols=38 Identities=16% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEEEEeCCc
Q 026064 183 NDPAFSYEETVQTAVSALQSVLQEDFKATEIEVGVVRSDDR 223 (244)
Q Consensus 183 ~~~~~s~~eai~la~~al~~~~~~d~~~~~iev~iv~~~~~ 223 (244)
..+.+|+++|.+++..++..+.++.. .+.|.|++..+.
T Consensus 61 ~~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 61 QSTHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 35779999999999999999987654 588888887763
No 70
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=20.43 E-value=1.5e+02 Score=21.20 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHHHHHhHHHcCCCCCHHHHHHHHHHHH
Q 026064 81 NTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKS 120 (244)
Q Consensus 81 ~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 120 (244)
++.|--.+++++|. |...++..+++..|++.++..+
T Consensus 46 LTe~HW~VI~flR~----~Y~e~~~~P~iR~l~K~~~~~~ 81 (115)
T 1sau_A 46 LTEEHWKIIRYLRD----YFIKYGVAPPVRMLVKHCKKEV 81 (115)
T ss_dssp CCHHHHHHHHHHHH----HHHHHSSCCCHHHHHHHHHHHT
T ss_pred ECHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 66777888888886 5566788899999999885554
No 71
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=20.16 E-value=1.2e+02 Score=21.08 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=14.8
Q ss_pred CCcEEEEECCCcceeeeeE
Q 026064 145 KGPQLYKCDPAGHFFGHKA 163 (244)
Q Consensus 145 ~gp~Ly~id~~G~~~~~~~ 163 (244)
.+..+|..||+|+..+...
T Consensus 132 ~g~~~~~~DPdG~~iel~~ 150 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRC 150 (156)
T ss_dssp CCEEEEEECTTSCEEEEEE
T ss_pred CccEEEEECCCCCEEEEEe
Confidence 3557889999999987643
Done!