Query 026066
Match_columns 244
No_of_seqs 400 out of 1557
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02399 phospholipid hydroper 100.0 2.5E-43 5.5E-48 288.2 20.3 233 1-242 1-233 (236)
2 PLN02412 probable glutathione 100.0 1.1E-32 2.3E-37 216.5 17.1 159 84-242 5-163 (167)
3 PRK10606 btuE putative glutath 100.0 2.5E-32 5.4E-37 215.9 16.5 156 86-242 3-180 (183)
4 PTZ00056 glutathione peroxidas 100.0 4.5E-32 9.8E-37 218.3 16.8 160 82-242 13-177 (199)
5 COG0386 BtuE Glutathione perox 100.0 1.1E-31 2.3E-36 199.7 15.1 155 87-242 4-159 (162)
6 cd00340 GSH_Peroxidase Glutath 100.0 1.8E-31 3.8E-36 206.6 15.7 151 88-239 2-152 (152)
7 KOG1651 Glutathione peroxidase 100.0 1.4E-30 3E-35 196.1 14.0 160 83-242 9-168 (171)
8 PTZ00256 glutathione peroxidas 100.0 3.8E-30 8.3E-35 204.9 17.1 159 84-242 16-180 (183)
9 TIGR02540 gpx7 putative glutat 100.0 3.7E-30 8E-35 199.4 16.0 151 88-242 2-152 (153)
10 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.6E-27 3.4E-32 181.6 13.8 149 81-243 3-156 (157)
11 PF08534 Redoxin: Redoxin; In 99.9 1.7E-26 3.6E-31 177.4 11.1 138 83-238 1-145 (146)
12 PRK09437 bcp thioredoxin-depen 99.9 2.4E-25 5.2E-30 172.6 13.6 148 81-242 3-152 (154)
13 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.1E-25 4.5E-30 166.3 11.4 123 84-225 1-124 (124)
14 PRK03147 thiol-disulfide oxido 99.9 6E-25 1.3E-29 173.3 13.6 140 80-243 33-172 (173)
15 cd03017 PRX_BCP Peroxiredoxin 99.9 3.7E-25 8.1E-30 168.5 12.0 139 86-240 1-140 (140)
16 PRK00522 tpx lipid hydroperoxi 99.9 7.9E-25 1.7E-29 171.8 14.1 145 81-242 17-165 (167)
17 PRK15412 thiol:disulfide inter 99.9 2.4E-25 5.3E-30 177.6 11.3 135 81-242 38-175 (185)
18 cd03015 PRX_Typ2cys Peroxiredo 99.9 2.7E-24 5.8E-29 169.9 14.3 141 84-242 1-156 (173)
19 cd03018 PRX_AhpE_like Peroxire 99.9 2.2E-24 4.8E-29 166.0 12.7 141 83-240 2-148 (149)
20 cd03014 PRX_Atyp2cys Peroxired 99.9 2.7E-24 5.9E-29 164.6 13.0 137 84-240 2-142 (143)
21 PRK13190 putative peroxiredoxi 99.9 2.5E-24 5.4E-29 173.9 13.3 143 82-243 2-154 (202)
22 TIGR03137 AhpC peroxiredoxin. 99.9 2.5E-24 5.4E-29 172.0 12.8 142 83-242 3-155 (187)
23 cd02969 PRX_like1 Peroxiredoxi 99.9 3E-24 6.6E-29 169.2 12.9 141 85-242 1-151 (171)
24 TIGR00385 dsbE periplasmic pro 99.9 2.9E-24 6.3E-29 169.7 11.2 135 81-242 33-170 (173)
25 PRK10382 alkyl hydroperoxide r 99.9 9.6E-24 2.1E-28 167.9 13.5 144 82-243 2-156 (187)
26 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.7E-24 8E-29 160.6 9.5 124 86-235 1-126 (127)
27 PRK13599 putative peroxiredoxi 99.9 1.5E-23 3.3E-28 170.3 13.6 144 83-243 3-156 (215)
28 PRK13191 putative peroxiredoxi 99.9 2.7E-23 5.9E-28 169.0 13.3 145 82-243 7-161 (215)
29 cd03016 PRX_1cys Peroxiredoxin 99.9 2.7E-23 5.9E-28 168.0 13.0 141 84-242 1-153 (203)
30 cd03012 TlpA_like_DipZ_like Tl 99.9 1.4E-23 3E-28 157.3 9.9 113 98-229 13-125 (126)
31 TIGR02661 MauD methylamine deh 99.9 5.3E-23 1.1E-27 164.6 13.2 131 82-242 46-178 (189)
32 cd02968 SCO SCO (an acronym fo 99.9 2.7E-23 5.8E-28 158.6 10.0 137 87-228 1-142 (142)
33 PRK15000 peroxidase; Provision 99.9 1E-22 2.2E-27 164.1 13.6 142 83-242 3-161 (200)
34 PTZ00137 2-Cys peroxiredoxin; 99.9 7.9E-23 1.7E-27 169.5 13.1 143 82-243 68-225 (261)
35 cd03008 TryX_like_RdCVF Trypar 99.9 1.8E-23 4E-28 159.2 8.2 108 99-227 16-130 (146)
36 PRK13189 peroxiredoxin; Provis 99.9 2.3E-22 5E-27 164.4 13.9 143 82-242 9-162 (222)
37 PRK14018 trifunctional thiored 99.9 1.2E-22 2.7E-27 182.4 13.3 139 82-241 32-171 (521)
38 cd02967 mauD Methylamine utili 99.9 2.8E-22 6E-27 147.4 11.5 110 89-226 1-112 (114)
39 PTZ00253 tryparedoxin peroxida 99.9 3.2E-22 7E-27 161.3 12.5 143 82-242 6-163 (199)
40 cd02971 PRX_family Peroxiredox 99.9 3.6E-22 7.9E-27 151.9 11.8 129 87-231 1-131 (140)
41 cd02970 PRX_like2 Peroxiredoxi 99.9 5.3E-22 1.2E-26 152.4 10.8 129 87-228 1-148 (149)
42 COG0450 AhpC Peroxiredoxin [Po 99.9 1.2E-21 2.6E-26 152.5 12.7 143 83-243 4-161 (194)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.9 8.5E-22 1.8E-26 146.7 10.8 122 89-239 1-122 (123)
44 PLN02919 haloacid dehalogenase 99.9 7.9E-22 1.7E-26 192.2 12.4 144 80-242 389-535 (1057)
45 TIGR01626 ytfJ_HI0045 conserve 99.9 3.8E-21 8.2E-26 151.4 10.4 137 81-241 22-178 (184)
46 cd02966 TlpA_like_family TlpA- 99.8 1.4E-20 3.1E-25 137.1 11.2 116 90-228 1-116 (116)
47 cd03013 PRX5_like Peroxiredoxi 99.8 1.1E-20 2.3E-25 146.5 10.8 132 84-230 1-141 (155)
48 PF00255 GSHPx: Glutathione pe 99.8 2.9E-20 6.3E-25 133.9 11.4 108 88-196 1-108 (108)
49 cd02964 TryX_like_family Trypa 99.8 4.8E-21 1E-25 144.7 7.5 110 96-227 4-117 (132)
50 PRK13728 conjugal transfer pro 99.8 1.6E-20 3.5E-25 147.1 9.2 119 84-242 51-170 (181)
51 cd03009 TryX_like_TryX_NRX Try 99.8 1.3E-20 2.9E-25 142.0 6.6 112 93-227 3-117 (131)
52 PF02630 SCO1-SenC: SCO1/SenC; 99.8 8.5E-19 1.8E-23 138.4 8.8 140 84-228 28-173 (174)
53 KOG0855 Alkyl hydroperoxide re 99.8 2.6E-18 5.6E-23 129.5 10.9 143 81-241 62-207 (211)
54 PF13905 Thioredoxin_8: Thiore 99.8 3.7E-19 8.1E-24 126.5 6.0 94 108-222 1-95 (95)
55 COG1999 Uncharacterized protei 99.8 1.7E-17 3.7E-22 134.1 12.7 148 90-242 49-203 (207)
56 TIGR02738 TrbB type-F conjugat 99.7 8E-18 1.7E-22 129.6 8.3 108 98-242 44-152 (153)
57 cd02950 TxlA TRX-like protein 99.7 8.7E-17 1.9E-21 122.8 7.0 105 93-242 3-109 (142)
58 KOG0852 Alkyl hydroperoxide re 99.7 8.8E-16 1.9E-20 116.8 11.3 142 83-242 5-160 (196)
59 cd02985 TRX_CDSP32 TRX family, 99.6 3E-15 6.5E-20 108.1 9.8 92 104-242 11-102 (103)
60 KOG2792 Putative cytochrome C 99.6 6.1E-15 1.3E-19 119.0 9.5 148 89-241 120-273 (280)
61 KOG0910 Thioredoxin-like prote 99.5 3.4E-14 7.4E-19 106.7 8.5 89 107-243 60-148 (150)
62 KOG2501 Thioredoxin, nucleored 99.5 2.1E-14 4.6E-19 108.7 7.2 115 91-226 15-132 (157)
63 KOG0854 Alkyl hydroperoxide re 99.5 3E-13 6.4E-18 103.2 12.0 150 81-243 5-168 (224)
64 cd02963 TRX_DnaJ TRX domain, D 99.5 1.9E-13 4.2E-18 100.0 9.9 91 105-242 21-111 (111)
65 cd02953 DsbDgamma DsbD gamma f 99.5 1.4E-13 3.1E-18 99.3 8.8 91 107-240 10-104 (104)
66 TIGR02740 TraF-like TraF-like 99.5 7E-14 1.5E-18 117.6 7.2 105 99-241 157-262 (271)
67 cd02948 TRX_NDPK TRX domain, T 99.5 2.7E-13 5.8E-18 97.7 9.0 87 107-242 16-102 (102)
68 cd02999 PDI_a_ERp44_like PDIa 99.5 2.2E-13 4.7E-18 97.8 7.8 87 104-239 14-100 (100)
69 cd02956 ybbN ybbN protein fami 99.4 6.5E-13 1.4E-17 94.3 9.1 86 107-240 11-96 (96)
70 cd02951 SoxW SoxW family; SoxW 99.4 3.3E-13 7.1E-18 100.7 7.4 102 107-242 12-118 (125)
71 COG2077 Tpx Peroxiredoxin [Pos 99.4 1.3E-12 2.9E-17 97.5 10.3 127 81-226 17-147 (158)
72 PHA02278 thioredoxin-like prot 99.4 1.6E-12 3.5E-17 93.6 8.4 88 107-238 13-100 (103)
73 PF13098 Thioredoxin_2: Thiore 99.4 1.5E-13 3.3E-18 100.4 2.6 106 107-239 4-112 (112)
74 cd02994 PDI_a_TMX PDIa family, 99.4 3.8E-12 8.3E-17 91.2 8.6 87 106-241 15-101 (101)
75 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 2.2E-12 4.7E-17 92.6 7.3 94 96-237 6-99 (101)
76 PRK09381 trxA thioredoxin; Pro 99.4 5E-12 1.1E-16 92.0 9.2 88 107-242 20-107 (109)
77 cd02954 DIM1 Dim1 family; Dim1 99.4 2.9E-12 6.3E-17 93.3 7.5 80 107-234 13-92 (114)
78 KOG0907 Thioredoxin [Posttrans 99.3 6.8E-12 1.5E-16 90.5 9.1 86 107-242 20-105 (106)
79 COG3118 Thioredoxin domain-con 99.3 4.4E-12 9.4E-17 105.2 8.3 88 107-242 42-129 (304)
80 PRK10996 thioredoxin 2; Provis 99.3 4.3E-12 9.2E-17 96.6 7.6 88 107-242 51-138 (139)
81 cd02993 PDI_a_APS_reductase PD 99.3 1.1E-11 2.4E-16 90.3 8.0 88 107-238 20-108 (109)
82 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 2.2E-11 4.7E-16 87.8 9.0 86 107-239 18-104 (104)
83 cd03005 PDI_a_ERp46 PDIa famil 99.3 9.8E-12 2.1E-16 89.0 6.8 83 110-239 18-102 (102)
84 cd02949 TRX_NTR TRX domain, no 99.3 3E-11 6.6E-16 86.0 9.0 86 107-240 12-97 (97)
85 cd03006 PDI_a_EFP1_N PDIa fami 99.3 1.9E-11 4.2E-16 89.4 7.9 85 107-238 28-112 (113)
86 cd03002 PDI_a_MPD1_like PDI fa 99.3 1.8E-11 4E-16 88.8 7.7 88 107-239 17-108 (109)
87 TIGR01295 PedC_BrcD bacterioci 99.3 8.4E-11 1.8E-15 87.3 10.9 99 107-240 22-121 (122)
88 cd03000 PDI_a_TMX3 PDIa family 99.2 4.4E-11 9.5E-16 86.3 8.6 87 107-241 14-102 (104)
89 PLN00410 U5 snRNP protein, DIM 99.2 6.6E-11 1.4E-15 89.5 9.7 88 107-241 22-118 (142)
90 TIGR01126 pdi_dom protein disu 99.2 3E-11 6.6E-16 86.3 7.3 89 107-242 12-101 (102)
91 PF00085 Thioredoxin: Thioredo 99.2 7.5E-11 1.6E-15 84.3 8.2 88 107-242 16-103 (103)
92 cd02997 PDI_a_PDIR PDIa family 99.2 9.8E-11 2.1E-15 84.0 7.9 88 107-239 16-104 (104)
93 PRK00293 dipZ thiol:disulfide 99.2 1.1E-10 2.5E-15 107.9 9.7 96 104-243 470-570 (571)
94 TIGR01068 thioredoxin thioredo 99.2 2.6E-10 5.7E-15 81.1 9.0 86 108-241 14-99 (101)
95 cd02996 PDI_a_ERp44 PDIa famil 99.1 1.3E-10 2.8E-15 84.4 7.2 86 107-239 17-108 (108)
96 cd02962 TMX2 TMX2 family; comp 99.1 2.2E-10 4.7E-15 88.1 8.5 45 107-151 46-90 (152)
97 PTZ00443 Thioredoxin domain-co 99.1 3.5E-10 7.6E-15 92.3 8.9 86 108-241 52-137 (224)
98 cd02984 TRX_PICOT TRX domain, 99.1 5.1E-10 1.1E-14 79.4 8.7 83 108-239 14-96 (97)
99 cd02998 PDI_a_ERp38 PDIa famil 99.1 2.4E-10 5.3E-15 82.0 6.6 87 108-239 18-105 (105)
100 cd02959 ERp19 Endoplasmic reti 99.1 1.3E-10 2.8E-15 85.7 5.2 46 104-150 15-60 (117)
101 PF00837 T4_deiodinase: Iodoth 99.1 5.3E-10 1.2E-14 90.6 8.3 147 78-243 69-237 (237)
102 cd03065 PDI_b_Calsequestrin_N 99.1 1E-09 2.2E-14 81.0 9.1 86 109-242 28-118 (120)
103 cd02986 DLP Dim1 family, Dim1- 99.1 9.8E-10 2.1E-14 79.6 8.3 43 107-150 13-55 (114)
104 cd02961 PDI_a_family Protein D 99.1 2.7E-10 5.9E-15 80.6 5.2 86 107-238 14-100 (101)
105 cd02965 HyaE HyaE family; HyaE 99.1 1.2E-09 2.6E-14 79.1 8.5 83 107-237 26-110 (111)
106 cd03001 PDI_a_P5 PDIa family, 99.0 1.5E-09 3.3E-14 77.7 8.7 85 108-239 18-102 (103)
107 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.2E-09 2.6E-14 78.3 7.1 44 107-150 17-61 (104)
108 PTZ00051 thioredoxin; Provisio 99.0 1.7E-09 3.7E-14 76.8 7.7 42 107-150 17-58 (98)
109 cd02955 SSP411 TRX domain, SSP 99.0 5.7E-09 1.2E-13 77.6 10.0 45 105-150 12-59 (124)
110 cd02957 Phd_like Phosducin (Ph 99.0 4.4E-09 9.5E-14 77.0 9.2 41 108-150 24-64 (113)
111 PTZ00102 disulphide isomerase; 99.0 2.1E-09 4.6E-14 97.6 8.6 104 93-242 359-464 (477)
112 TIGR00424 APS_reduc 5'-adenyly 98.9 4.2E-09 9.1E-14 94.3 9.1 93 106-242 369-462 (463)
113 cd02947 TRX_family TRX family; 98.9 1.3E-08 2.7E-13 70.6 9.0 83 109-240 11-93 (93)
114 TIGR00411 redox_disulf_1 small 98.9 1.7E-08 3.8E-13 69.1 8.9 80 111-242 2-81 (82)
115 cd02989 Phd_like_TxnDC9 Phosdu 98.9 1.3E-08 2.9E-13 74.5 8.6 42 107-150 21-62 (113)
116 cd02958 UAS UAS family; UAS is 98.9 3.2E-08 6.9E-13 72.5 10.1 94 104-242 13-110 (114)
117 cd02975 PfPDO_like_N Pyrococcu 98.9 2E-08 4.4E-13 73.5 9.0 87 108-242 22-109 (113)
118 PLN02309 5'-adenylylsulfate re 98.8 1.6E-08 3.5E-13 90.5 9.5 92 107-242 364-456 (457)
119 cd02952 TRP14_like Human TRX-r 98.8 9.1E-09 2E-13 75.8 6.4 45 106-151 19-70 (119)
120 cd02987 Phd_like_Phd Phosducin 98.8 3.1E-08 6.6E-13 78.2 9.4 41 108-150 83-123 (175)
121 KOG0908 Thioredoxin-like prote 98.8 1.3E-08 2.9E-13 82.3 7.1 91 102-242 15-105 (288)
122 cd02988 Phd_like_VIAF Phosduci 98.8 3.3E-08 7.1E-13 79.1 8.7 82 108-241 102-190 (192)
123 cd02992 PDI_a_QSOX PDIa family 98.8 3.9E-08 8.5E-13 72.1 8.3 43 108-150 19-63 (114)
124 cd02982 PDI_b'_family Protein 98.7 9.6E-08 2.1E-12 68.3 8.5 90 108-242 12-102 (103)
125 TIGR01130 ER_PDI_fam protein d 98.7 8.6E-08 1.9E-12 86.6 9.1 89 107-242 17-108 (462)
126 PF13728 TraF: F plasmid trans 98.7 9.3E-08 2E-12 77.9 7.8 100 102-239 114-214 (215)
127 TIGR00412 redox_disulf_2 small 98.7 1.3E-07 2.7E-12 64.2 7.2 36 112-148 2-37 (76)
128 PTZ00062 glutaredoxin; Provisi 98.6 1.9E-07 4E-12 75.2 8.7 76 109-242 18-93 (204)
129 PTZ00102 disulphide isomerase; 98.6 9.5E-08 2.1E-12 86.9 7.7 88 107-242 48-137 (477)
130 TIGR02739 TraF type-F conjugat 98.5 3.3E-07 7.2E-12 76.1 7.8 101 103-241 145-246 (256)
131 cd02960 AGR Anterior Gradient 98.5 4E-07 8.7E-12 67.8 7.4 25 106-130 21-45 (130)
132 TIGR01130 ER_PDI_fam protein d 98.5 4.3E-07 9.4E-12 82.0 9.2 88 107-242 363-453 (462)
133 PRK13703 conjugal pilus assemb 98.5 6.1E-07 1.3E-11 74.1 7.6 101 103-241 138-239 (248)
134 TIGR02187 GlrX_arch Glutaredox 98.5 8.3E-07 1.8E-11 72.4 8.3 90 106-242 17-110 (215)
135 smart00594 UAS UAS domain. 98.4 2.2E-06 4.7E-11 63.6 9.2 90 106-240 25-122 (122)
136 COG4232 Thiol:disulfide interc 98.4 7.6E-07 1.6E-11 80.7 6.6 97 105-243 471-568 (569)
137 PF14595 Thioredoxin_9: Thiore 98.3 7.1E-07 1.5E-11 66.8 4.7 93 104-243 37-129 (129)
138 KOG0190 Protein disulfide isom 98.3 1.2E-06 2.5E-11 78.7 6.5 87 109-242 43-131 (493)
139 COG0678 AHP1 Peroxiredoxin [Po 98.3 5.6E-06 1.2E-10 62.2 9.0 131 82-227 3-146 (165)
140 cd03026 AhpF_NTD_C TRX-GRX-lik 98.2 7.2E-06 1.6E-10 57.3 7.9 46 103-150 7-52 (89)
141 TIGR02187 GlrX_arch Glutaredox 98.2 6.9E-06 1.5E-10 67.0 9.0 43 106-150 131-173 (215)
142 PF04592 SelP_N: Selenoprotein 98.2 2.2E-05 4.7E-10 63.6 9.8 120 84-227 6-127 (238)
143 PHA02125 thioredoxin-like prot 98.1 1.7E-05 3.7E-10 53.5 7.3 22 112-133 2-23 (75)
144 COG0526 TrxA Thiol-disulfide i 98.1 5.1E-06 1.1E-10 59.4 5.0 48 102-150 26-73 (127)
145 PF13899 Thioredoxin_7: Thiore 98.1 1.2E-05 2.6E-10 55.2 6.5 43 107-150 16-61 (82)
146 PF09695 YtfJ_HI0045: Bacteria 98.0 0.00018 3.9E-09 54.9 12.4 143 83-242 2-157 (160)
147 KOG0190 Protein disulfide isom 98.0 1.7E-05 3.8E-10 71.2 7.4 42 107-148 383-425 (493)
148 cd02973 TRX_GRX_like Thioredox 97.9 6.4E-05 1.4E-09 49.2 7.4 37 112-150 3-39 (67)
149 cd01659 TRX_superfamily Thiore 97.9 5.8E-05 1.3E-09 47.5 6.9 38 112-151 1-38 (69)
150 COG2143 Thioredoxin-related pr 97.8 0.00047 1E-08 52.4 10.6 103 105-240 39-146 (182)
151 KOG0541 Alkyl hydroperoxide re 97.7 0.0004 8.7E-09 52.6 9.7 134 79-227 6-152 (171)
152 TIGR02196 GlrX_YruB Glutaredox 97.7 0.00031 6.8E-09 46.3 8.3 32 112-150 2-33 (74)
153 PF05988 DUF899: Bacterial pro 97.7 0.0012 2.6E-08 52.9 11.7 84 87-180 45-136 (211)
154 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.00033 7.1E-09 51.3 7.9 93 107-241 17-114 (116)
155 KOG0191 Thioredoxin/protein di 97.6 0.00043 9.4E-09 61.4 9.4 43 107-150 46-88 (383)
156 cd02991 UAS_ETEA UAS family, E 97.5 0.00075 1.6E-08 49.5 7.7 91 104-242 13-112 (116)
157 KOG0912 Thiol-disulfide isomer 97.5 0.00026 5.7E-09 59.4 5.8 87 108-241 13-104 (375)
158 PF05176 ATP-synt_10: ATP10 pr 97.4 0.00047 1E-08 57.5 7.1 135 83-240 96-247 (252)
159 TIGR02200 GlrX_actino Glutared 97.4 0.00088 1.9E-08 44.7 7.2 32 112-150 2-33 (77)
160 PF13911 AhpC-TSA_2: AhpC/TSA 97.4 0.0018 4E-08 47.2 8.6 87 130-228 2-113 (115)
161 PRK11657 dsbG disulfide isomer 97.3 0.0019 4.2E-08 53.9 9.6 121 107-241 116-250 (251)
162 PRK10877 protein disulfide iso 97.3 0.0012 2.6E-08 54.5 7.9 119 107-243 106-231 (232)
163 PRK11509 hydrogenase-1 operon 97.2 0.0028 6.2E-08 47.4 8.3 94 102-242 26-123 (132)
164 TIGR02180 GRX_euk Glutaredoxin 97.0 0.0013 2.9E-08 44.7 4.9 36 112-150 1-36 (84)
165 PF13778 DUF4174: Domain of un 97.0 0.011 2.3E-07 43.5 9.6 105 103-241 3-110 (118)
166 PF03190 Thioredox_DsbH: Prote 97.0 0.0054 1.2E-07 47.5 8.1 28 101-128 30-57 (163)
167 PF13192 Thioredoxin_3: Thiore 96.7 0.0039 8.4E-08 42.0 4.9 31 116-147 6-36 (76)
168 KOG4277 Uncharacterized conser 96.6 0.0037 8.1E-08 52.6 5.2 35 109-143 44-78 (468)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 96.5 0.0062 1.3E-07 48.8 5.4 32 101-132 70-101 (197)
170 KOG0191 Thioredoxin/protein di 96.4 0.013 2.7E-07 52.1 7.3 41 109-149 163-204 (383)
171 KOG4498 Uncharacterized conser 96.3 0.042 9E-07 43.2 9.1 55 94-148 35-91 (197)
172 KOG1731 FAD-dependent sulfhydr 96.1 0.0024 5.3E-08 58.0 1.3 61 109-179 58-121 (606)
173 COG4312 Uncharacterized protei 96.0 0.081 1.8E-06 42.6 9.3 82 90-181 54-143 (247)
174 PF06110 DUF953: Eukaryotic pr 95.9 0.022 4.9E-07 41.8 5.6 43 107-150 18-67 (119)
175 PRK11200 grxA glutaredoxin 1; 95.9 0.025 5.5E-07 38.7 5.6 37 112-150 3-39 (85)
176 cd03023 DsbA_Com1_like DsbA fa 95.6 0.018 3.9E-07 43.6 4.3 41 107-149 4-44 (154)
177 PF02114 Phosducin: Phosducin; 95.5 0.12 2.7E-06 43.4 9.0 41 108-150 146-186 (265)
178 TIGR03143 AhpF_homolog putativ 95.2 0.1 2.2E-06 48.7 8.5 40 107-148 475-514 (555)
179 PF11009 DUF2847: Protein of u 95.2 0.11 2.4E-06 37.2 6.8 77 107-226 18-94 (105)
180 PF13462 Thioredoxin_4: Thiore 95.1 0.049 1.1E-06 41.7 5.3 49 101-150 5-55 (162)
181 cd02976 NrdH NrdH-redoxin (Nrd 95.1 0.12 2.7E-06 33.4 6.4 32 112-150 2-33 (73)
182 cd03419 GRX_GRXh_1_2_like Glut 94.8 0.077 1.7E-06 35.7 5.0 34 112-150 2-35 (82)
183 KOG3425 Uncharacterized conser 94.4 0.094 2E-06 38.2 4.7 43 107-150 24-74 (128)
184 PF00462 Glutaredoxin: Glutare 94.4 0.11 2.4E-06 32.8 4.7 32 112-150 1-32 (60)
185 cd03418 GRX_GRXb_1_3_like Glut 93.8 0.3 6.5E-06 32.1 6.2 32 112-150 2-33 (75)
186 cd02066 GRX_family Glutaredoxi 93.7 0.17 3.7E-06 32.5 4.8 32 112-150 2-33 (72)
187 TIGR02181 GRX_bact Glutaredoxi 93.7 0.19 4.2E-06 33.6 5.1 31 113-150 2-32 (79)
188 KOG0913 Thiol-disulfide isomer 93.7 0.048 1E-06 44.4 2.3 41 107-148 39-79 (248)
189 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 0.71 1.5E-05 41.6 9.5 72 78-150 266-337 (453)
190 cd03019 DsbA_DsbA DsbA family, 93.5 0.13 2.8E-06 40.0 4.5 42 107-149 14-55 (178)
191 PRK15317 alkyl hydroperoxide r 93.3 0.48 1E-05 43.8 8.6 41 106-148 114-154 (517)
192 TIGR02183 GRXA Glutaredoxin, G 93.2 0.25 5.4E-06 33.9 5.1 37 112-150 2-38 (86)
193 PHA03075 glutaredoxin-like pro 93.1 0.51 1.1E-05 34.2 6.5 30 109-138 2-31 (123)
194 PRK10329 glutaredoxin-like pro 93.0 0.43 9.4E-06 32.4 5.9 32 112-150 3-34 (81)
195 TIGR02190 GlrX-dom Glutaredoxi 92.8 0.37 8E-06 32.4 5.3 35 109-150 7-41 (79)
196 cd03027 GRX_DEP Glutaredoxin ( 92.3 0.75 1.6E-05 30.2 6.3 31 113-150 4-34 (73)
197 COG0695 GrxC Glutaredoxin and 92.2 0.64 1.4E-05 31.5 5.9 43 112-167 3-45 (80)
198 PHA03050 glutaredoxin; Provisi 91.8 0.31 6.7E-06 35.1 4.2 22 112-133 15-36 (108)
199 TIGR03140 AhpF alkyl hydropero 91.8 1 2.2E-05 41.7 8.7 40 106-147 115-154 (515)
200 KOG0914 Thioredoxin-like prote 91.8 0.18 4E-06 40.7 3.2 44 107-150 143-186 (265)
201 TIGR01617 arsC_related transcr 91.2 0.55 1.2E-05 34.2 5.1 50 114-175 3-52 (117)
202 TIGR02189 GlrX-like_plant Glut 91.0 0.64 1.4E-05 32.9 5.1 32 112-150 10-41 (99)
203 PF13848 Thioredoxin_6: Thiore 90.8 0.79 1.7E-05 35.6 6.1 89 108-241 94-184 (184)
204 TIGR02194 GlrX_NrdH Glutaredox 90.8 0.71 1.5E-05 30.3 4.9 31 113-150 2-32 (72)
205 cd03028 GRX_PICOT_like Glutare 90.6 1.3 2.8E-05 30.6 6.3 37 107-150 6-46 (90)
206 cd02983 P5_C P5 family, C-term 90.6 1.2 2.6E-05 33.2 6.4 89 109-242 21-114 (130)
207 cd03029 GRX_hybridPRX5 Glutare 90.5 0.88 1.9E-05 29.8 5.1 32 112-150 3-34 (72)
208 KOG3414 Component of the U4/U6 90.2 1.1 2.4E-05 33.0 5.7 57 107-176 22-78 (142)
209 TIGR00365 monothiol glutaredox 90.2 1.5 3.3E-05 30.8 6.4 36 108-150 11-50 (97)
210 cd03073 PDI_b'_ERp72_ERp57 PDI 90.2 3.3 7.2E-05 29.9 8.4 32 211-243 79-111 (111)
211 PRK10638 glutaredoxin 3; Provi 89.8 1.4 2.9E-05 29.8 5.8 32 112-150 4-35 (83)
212 PRK10954 periplasmic protein d 89.4 0.42 9.1E-06 38.6 3.5 43 107-150 36-81 (207)
213 KOG0911 Glutaredoxin-related p 88.5 0.2 4.4E-06 40.6 1.0 42 107-150 16-57 (227)
214 TIGR00995 3a0901s06TIC22 chlor 88.5 3.6 7.8E-05 34.6 8.3 135 83-243 77-215 (270)
215 cd02972 DsbA_family DsbA famil 88.3 0.59 1.3E-05 31.8 3.2 38 112-150 1-38 (98)
216 COG1331 Highly conserved prote 87.0 5.6 0.00012 37.7 9.5 23 106-128 41-63 (667)
217 KOG2507 Ubiquitin regulatory p 86.8 3.1 6.8E-05 37.0 7.2 34 209-242 77-110 (506)
218 cd02979 PHOX_C FAD-dependent P 86.7 13 0.00028 28.9 10.3 51 85-137 1-55 (167)
219 KOG4614 Inner membrane protein 86.5 0.98 2.1E-05 37.0 3.8 32 211-242 249-280 (287)
220 COG1651 DsbG Protein-disulfide 85.6 2.3 4.9E-05 35.0 5.8 54 94-147 70-123 (244)
221 cd02977 ArsC_family Arsenate R 83.4 2.5 5.5E-05 29.9 4.5 48 113-172 2-49 (105)
222 COG3054 Predicted transcriptio 83.3 1.9 4.2E-05 32.8 3.9 31 211-241 148-178 (184)
223 cd03036 ArsC_like Arsenate Red 83.2 2.5 5.4E-05 30.5 4.4 48 114-173 3-50 (111)
224 cd03035 ArsC_Yffb Arsenate Red 83.2 2.8 6E-05 30.0 4.6 48 113-172 2-49 (105)
225 cd03032 ArsC_Spx Arsenate Redu 83.0 3.3 7.2E-05 30.0 5.0 50 113-174 3-52 (115)
226 PRK01655 spxA transcriptional 82.3 2.7 5.9E-05 31.3 4.4 50 113-174 3-52 (131)
227 COG3019 Predicted metal-bindin 81.6 19 0.0004 27.2 8.4 32 112-150 28-59 (149)
228 KOG2961 Predicted hydrolase (H 79.0 27 0.00059 26.9 8.8 102 88-196 22-131 (190)
229 COG4545 Glutaredoxin-related p 79.0 8.2 0.00018 25.8 5.2 41 113-167 5-45 (85)
230 PRK10824 glutaredoxin-4; Provi 78.6 7.2 0.00016 28.4 5.5 26 108-133 14-43 (115)
231 KOG1752 Glutaredoxin and relat 78.0 5.9 0.00013 28.3 4.8 46 109-167 14-59 (104)
232 PRK12559 transcriptional regul 77.9 6.8 0.00015 29.2 5.3 49 112-172 2-50 (131)
233 PRK10026 arsenate reductase; P 77.6 28 0.00062 26.3 8.8 49 113-173 5-53 (141)
234 PF05768 DUF836: Glutaredoxin- 76.2 2.7 5.8E-05 28.4 2.5 53 112-179 2-54 (81)
235 PF02966 DIM1: Mitosis protein 75.0 7.5 0.00016 29.0 4.7 43 107-150 19-61 (133)
236 KOG1672 ATP binding protein [P 74.5 6.7 0.00014 31.3 4.6 41 107-149 83-123 (211)
237 PTZ00062 glutaredoxin; Provisi 73.9 10 0.00022 30.6 5.7 37 107-150 111-151 (204)
238 cd03072 PDI_b'_ERp44 PDIb' fam 73.4 23 0.00051 25.4 7.0 32 211-242 75-107 (111)
239 TIGR03759 conj_TIGR03759 integ 72.6 10 0.00022 30.4 5.2 56 110-178 110-165 (200)
240 PRK13344 spxA transcriptional 71.9 12 0.00025 28.0 5.3 51 113-175 3-53 (132)
241 TIGR03143 AhpF_homolog putativ 71.8 20 0.00042 33.6 7.9 42 104-147 362-403 (555)
242 PF06053 DUF929: Domain of unk 71.2 5.7 0.00012 33.1 3.7 35 106-140 56-90 (249)
243 KOG1201 Hydroxysteroid 17-beta 71.0 23 0.00049 30.3 7.3 111 102-239 32-142 (300)
244 PF04278 Tic22: Tic22-like fam 70.8 65 0.0014 27.3 10.2 60 85-150 72-136 (274)
245 PF08821 CGGC: CGGC domain; I 70.1 18 0.00039 26.0 5.7 70 99-172 26-99 (107)
246 COG1651 DsbG Protein-disulfide 69.6 1.3 2.8E-05 36.5 -0.4 27 109-135 119-145 (244)
247 PF08806 Sep15_SelM: Sep15/Sel 68.3 2.6 5.6E-05 28.5 0.9 31 211-241 43-74 (78)
248 PRK15126 thiamin pyrimidine py 67.9 70 0.0015 26.5 10.8 38 132-178 26-63 (272)
249 cd02981 PDI_b_family Protein D 66.1 38 0.00083 22.9 7.9 35 108-146 17-51 (97)
250 PF07976 Phe_hydrox_dim: Pheno 65.0 28 0.00062 27.0 6.4 72 79-150 27-116 (169)
251 PF13462 Thioredoxin_4: Thiore 64.2 8.4 0.00018 29.0 3.3 29 207-241 134-162 (162)
252 PRK10714 undecaprenyl phosphat 62.2 81 0.0017 27.2 9.3 24 211-242 92-115 (325)
253 PRK10530 pyridoxal phosphate ( 62.0 89 0.0019 25.7 10.2 39 131-178 26-64 (272)
254 PRK08294 phenol 2-monooxygenas 61.9 68 0.0015 30.6 9.5 52 80-131 461-517 (634)
255 PRK10976 putative hydrolase; P 61.3 92 0.002 25.6 10.0 39 131-178 25-63 (266)
256 KOG1364 Predicted ubiquitin re 61.3 7.9 0.00017 33.6 2.8 35 208-242 153-188 (356)
257 PF06953 ArsD: Arsenical resis 60.4 49 0.0011 24.4 6.5 34 117-150 10-49 (123)
258 KOG3170 Conserved phosducin-li 60.0 16 0.00035 29.4 4.1 40 107-148 110-149 (240)
259 PRK12759 bifunctional gluaredo 59.9 18 0.00038 32.6 4.9 32 112-150 4-35 (410)
260 PF06764 DUF1223: Protein of u 58.5 97 0.0021 25.0 9.1 36 114-152 4-39 (202)
261 PF04134 DUF393: Protein of un 57.8 22 0.00048 25.2 4.4 30 115-147 2-31 (114)
262 PRK08132 FAD-dependent oxidore 55.2 78 0.0017 29.4 8.6 35 82-117 427-462 (547)
263 PF04723 GRDA: Glycine reducta 54.9 12 0.00025 28.1 2.4 38 113-150 33-77 (150)
264 PF07449 HyaE: Hydrogenase-1 e 54.7 23 0.00049 25.5 3.8 23 211-234 84-106 (107)
265 COG0552 FtsY Signal recognitio 53.6 1.1E+02 0.0024 26.8 8.4 98 107-223 136-234 (340)
266 COG2179 Predicted hydrolase of 53.4 38 0.00083 26.5 5.1 60 109-177 29-89 (175)
267 PF01323 DSBA: DSBA-like thior 52.5 18 0.00038 28.2 3.4 39 112-150 2-40 (193)
268 PLN02726 dolichyl-phosphate be 50.9 1.3E+02 0.0028 24.3 9.3 12 211-222 95-106 (243)
269 cd03025 DsbA_FrnE_like DsbA fa 50.3 20 0.00043 27.9 3.4 33 112-145 3-35 (193)
270 PF01976 DUF116: Protein of un 49.8 1.2E+02 0.0026 23.4 7.5 25 212-240 134-158 (158)
271 TIGR00099 Cof-subfamily Cof su 48.5 1.5E+02 0.0032 24.2 10.6 39 131-178 22-60 (256)
272 PF05673 DUF815: Protein of un 48.4 79 0.0017 26.4 6.6 95 110-220 54-148 (249)
273 PF07411 DUF1508: Domain of un 48.1 28 0.00061 21.0 3.0 32 211-242 6-37 (49)
274 PRK13265 glycine/sarcosine/bet 47.9 18 0.00039 27.1 2.4 36 113-148 34-76 (154)
275 TIGR00014 arsC arsenate reduct 47.8 52 0.0011 23.7 4.9 48 114-173 3-50 (114)
276 PF14062 DUF4253: Domain of un 45.2 41 0.00089 24.2 4.0 52 119-173 25-79 (111)
277 PRK12359 flavodoxin FldB; Prov 44.3 83 0.0018 24.6 5.9 14 230-243 152-165 (172)
278 KOG3384 Selenoprotein [General 43.6 58 0.0013 24.4 4.5 31 211-241 118-149 (154)
279 PF07912 ERp29_N: ERp29, N-ter 43.3 1.3E+02 0.0029 22.2 7.7 32 211-242 85-118 (126)
280 cd08344 MhqB_like_N N-terminal 43.1 1.1E+02 0.0024 21.2 6.5 19 212-230 93-111 (112)
281 cd03033 ArsC_15kD Arsenate Red 42.6 72 0.0016 23.0 5.0 48 113-172 3-50 (113)
282 PF10673 DUF2487: Protein of u 42.0 64 0.0014 24.5 4.7 47 104-150 46-94 (142)
283 PRK04101 fosfomycin resistance 41.5 84 0.0018 23.0 5.4 23 211-233 102-124 (139)
284 PRK10853 putative reductase; P 41.4 58 0.0013 23.7 4.4 49 113-173 3-51 (118)
285 COG1535 EntB Isochorismate hyd 41.0 45 0.00097 26.5 3.8 37 112-148 42-78 (218)
286 COG0300 DltE Short-chain dehyd 40.4 1.1E+02 0.0025 25.7 6.4 91 132-239 21-112 (265)
287 PF10790 DUF2604: Protein of U 37.7 30 0.00064 22.3 2.0 25 81-105 29-53 (76)
288 PF01323 DSBA: DSBA-like thior 37.5 36 0.00077 26.4 3.0 29 207-240 165-193 (193)
289 PF02563 Poly_export: Polysacc 37.4 46 0.001 22.3 3.1 29 213-241 32-65 (82)
290 cd03034 ArsC_ArsC Arsenate Red 36.9 95 0.0021 22.2 4.9 48 114-173 3-50 (112)
291 TIGR03765 ICE_PFL_4695 integra 36.1 1.4E+02 0.0031 21.3 5.4 68 125-220 35-102 (105)
292 PF09419 PGP_phosphatase: Mito 36.0 1.8E+02 0.0039 22.7 6.5 88 87-178 17-110 (168)
293 cd03024 DsbA_FrnE DsbA family, 35.9 1.5E+02 0.0032 23.1 6.3 33 114-146 3-36 (201)
294 PF11211 DUF2997: Protein of u 35.7 64 0.0014 19.5 3.2 19 213-231 2-20 (48)
295 PF11072 DUF2859: Protein of u 35.7 1.1E+02 0.0024 23.2 5.1 70 124-221 72-141 (142)
296 cd03031 GRX_GRX_like Glutaredo 35.6 1.3E+02 0.0029 22.8 5.7 25 119-150 15-39 (147)
297 PF12681 Glyoxalase_2: Glyoxal 35.1 1.2E+02 0.0025 20.5 5.1 15 211-225 93-107 (108)
298 PF08918 PhoQ_Sensor: PhoQ Sen 34.9 23 0.0005 27.5 1.4 25 213-240 77-101 (180)
299 PF12017 Tnp_P_element: Transp 34.6 1.9E+02 0.0041 24.0 6.8 25 127-151 195-219 (236)
300 cd08352 Glo_EDI_BRP_like_1 Thi 34.4 1.5E+02 0.0034 20.3 6.8 15 212-226 110-124 (125)
301 cd08353 Glo_EDI_BRP_like_7 Thi 34.2 1.8E+02 0.0039 21.0 6.3 16 211-226 124-139 (142)
302 KOG1014 17 beta-hydroxysteroid 34.0 1.4E+02 0.0031 25.8 6.1 96 100-221 41-136 (312)
303 COG1215 Glycosyltransferases, 34.0 2.3E+02 0.0049 25.1 7.9 27 122-148 61-91 (439)
304 COG0561 Cof Predicted hydrolas 33.8 2.7E+02 0.0058 22.8 9.0 60 110-178 5-64 (264)
305 PRK06183 mhpA 3-(3-hydroxyphen 33.6 3.9E+02 0.0085 24.7 10.1 34 82-115 411-445 (538)
306 COG2607 Predicted ATPase (AAA+ 32.9 1.5E+02 0.0033 25.0 5.8 78 130-218 102-179 (287)
307 COG0541 Ffh Signal recognition 32.9 3.4E+02 0.0073 24.8 8.4 61 107-174 97-157 (451)
308 TIGR01616 nitro_assoc nitrogen 32.7 1.4E+02 0.003 22.0 5.2 48 112-171 3-50 (126)
309 KOG1615 Phosphoserine phosphat 32.3 1.1E+02 0.0023 24.8 4.7 42 127-177 90-131 (227)
310 PTZ00260 dolichyl-phosphate be 30.3 3.6E+02 0.0078 23.3 8.7 23 141-167 107-129 (333)
311 COG0821 gcpE 1-hydroxy-2-methy 30.2 89 0.0019 27.3 4.2 30 211-241 320-349 (361)
312 cd07266 HPCD_N_class_II N-term 30.1 1.8E+02 0.0038 20.2 5.5 18 211-228 101-118 (121)
313 PF12098 DUF3574: Protein of u 30.1 1.7E+02 0.0037 20.9 5.1 51 84-139 30-86 (104)
314 PF07935 SSV1_ORF_D-335: ORF D 30.1 62 0.0013 21.4 2.6 29 213-243 19-49 (72)
315 COG3011 Predicted thiol-disulf 30.0 1.8E+02 0.0039 21.9 5.4 37 109-148 7-43 (137)
316 PF14307 Glyco_tran_WbsX: Glyc 28.5 1.1E+02 0.0024 26.7 4.7 43 107-149 157-199 (345)
317 COG1393 ArsC Arsenate reductas 28.4 2.1E+02 0.0045 20.8 5.5 50 113-176 4-55 (117)
318 PF10813 DUF2733: Protein of u 28.3 31 0.00067 19.0 0.8 14 92-105 14-27 (32)
319 KOG0394 Ras-related GTPase [Ge 28.0 1.1E+02 0.0023 24.6 4.0 103 89-193 44-171 (210)
320 PF01106 NifU: NifU-like domai 27.9 1.5E+02 0.0034 19.1 4.3 33 97-130 15-47 (68)
321 PF14427 Pput2613-deam: Pput_2 27.9 83 0.0018 22.7 3.1 43 101-149 59-101 (118)
322 TIGR01689 EcbF-BcbF capsule bi 27.6 2.2E+02 0.0048 21.0 5.6 48 130-178 29-83 (126)
323 PF13743 Thioredoxin_5: Thiore 27.5 57 0.0012 25.4 2.6 34 114-148 2-35 (176)
324 cd03060 GST_N_Omega_like GST_N 27.4 57 0.0012 20.7 2.2 30 114-148 3-32 (71)
325 COG1129 MglA ABC-type sugar tr 27.0 5.2E+02 0.011 24.1 9.2 58 89-148 139-202 (500)
326 PRK11478 putative lyase; Provi 26.8 2.3E+02 0.0049 19.9 6.5 16 211-226 112-127 (129)
327 PRK11509 hydrogenase-1 operon 26.6 2.3E+02 0.0049 21.2 5.5 8 160-167 113-120 (132)
328 PF03960 ArsC: ArsC family; I 26.4 1.5E+02 0.0032 20.9 4.4 51 116-178 2-52 (110)
329 COG0525 ValS Valyl-tRNA synthe 26.4 80 0.0017 31.4 3.7 19 118-136 173-191 (877)
330 PRK14324 glmM phosphoglucosami 26.3 2.9E+02 0.0063 25.0 7.2 37 141-178 199-240 (446)
331 cd08364 FosX FosX, a fosfomyci 26.3 1.6E+02 0.0035 21.1 4.8 19 211-229 105-123 (131)
332 cd07255 Glo_EDI_BRP_like_12 Th 26.0 2.3E+02 0.005 19.6 6.5 18 211-228 102-119 (125)
333 cd08348 BphC2-C3-RGP6_C_like T 25.7 2.5E+02 0.0054 19.9 7.3 19 211-229 103-121 (134)
334 PLN02640 glucose-6-phosphate 1 25.4 3.1E+02 0.0066 26.0 7.2 68 84-151 61-131 (573)
335 PF09547 Spore_IV_A: Stage IV 25.4 2.4E+02 0.0051 25.9 6.2 60 107-177 179-238 (492)
336 PF08235 LNS2: LNS2 (Lipin/Ned 25.1 1.4E+02 0.0031 23.0 4.3 62 93-167 3-64 (157)
337 PRK05778 2-oxoglutarate ferred 24.8 83 0.0018 27.1 3.2 21 117-138 18-38 (301)
338 PHA02762 hypothetical protein; 24.8 1.5E+02 0.0032 18.3 3.4 32 211-243 29-60 (62)
339 cd07238 Glo_EDI_BRP_like_5 Thi 24.2 2.4E+02 0.0052 19.2 5.6 16 211-226 94-109 (112)
340 PF14903 WG_beta_rep: WG conta 24.2 52 0.0011 17.5 1.3 10 215-224 3-12 (35)
341 cd08359 Glo_EDI_BRP_like_22 Th 23.8 2.5E+02 0.0054 19.3 5.9 15 211-225 103-117 (119)
342 PRK11867 2-oxoglutarate ferred 23.5 65 0.0014 27.5 2.3 20 117-137 17-36 (286)
343 PLN03034 phosphoglycerate kina 23.4 6E+02 0.013 23.5 10.1 77 104-186 88-176 (481)
344 PF08282 Hydrolase_3: haloacid 23.4 3.7E+02 0.008 21.1 7.9 43 123-178 17-59 (254)
345 PRK10887 glmM phosphoglucosami 22.9 5.1E+02 0.011 23.4 8.1 37 141-178 195-236 (443)
346 KOG2990 C2C2-type Zn-finger pr 22.7 57 0.0012 27.7 1.7 19 110-128 42-63 (317)
347 cd03063 TRX_Fd_FDH_beta TRX-li 22.6 1.5E+02 0.0033 20.5 3.7 28 211-241 49-76 (92)
348 PF03544 TonB_C: Gram-negative 22.1 1.3E+02 0.0028 19.3 3.2 32 211-242 19-55 (79)
349 cd07267 THT_Oxygenase_N N-term 21.9 2.8E+02 0.006 19.1 6.4 18 211-228 93-110 (113)
350 cd08363 FosB FosB, a fosfomyci 21.8 3.1E+02 0.0067 19.6 6.1 19 211-229 98-116 (131)
351 PRK04596 minC septum formation 21.7 2.7E+02 0.0058 23.3 5.5 40 106-148 48-87 (248)
352 KOG0780 Signal recognition par 21.6 3.3E+02 0.0071 24.7 6.2 58 106-174 97-158 (483)
353 PF01740 STAS: STAS domain; I 21.4 2.9E+02 0.0064 19.2 6.0 40 109-149 49-88 (117)
354 PRK06756 flavodoxin; Provision 21.2 2.9E+02 0.0062 20.4 5.3 8 106-113 81-88 (148)
355 PF11720 Inhibitor_I78: Peptid 21.2 1.7E+02 0.0037 18.3 3.4 19 210-228 42-60 (60)
356 PRK14315 glmM phosphoglucosami 21.2 5.6E+02 0.012 23.2 8.0 18 160-178 224-241 (448)
357 PF12690 BsuPI: Intracellular 21.0 1.1E+02 0.0023 20.7 2.6 18 212-229 27-44 (82)
358 TIGR02177 PorB_KorB 2-oxoacid: 20.7 1.1E+02 0.0025 26.0 3.3 19 118-137 2-20 (287)
359 PRK10513 sugar phosphate phosp 20.4 4.8E+02 0.01 21.3 9.8 34 131-173 26-59 (270)
360 COG3769 Predicted hydrolase (H 20.3 2.5E+02 0.0054 23.3 4.9 38 133-179 31-69 (274)
361 PHA02530 pseT polynucleotide k 20.3 5.1E+02 0.011 21.6 8.6 16 211-226 158-173 (300)
362 PRK10200 putative racemase; Pr 20.3 2.1E+02 0.0046 23.3 4.7 45 125-179 59-103 (230)
363 cd09011 Glo_EDI_BRP_like_23 Th 20.2 3.1E+02 0.0067 19.0 6.4 17 211-227 102-118 (120)
364 TIGR02461 osmo_MPG_phos mannos 20.2 4.7E+02 0.01 21.1 9.6 39 131-178 21-59 (225)
365 PRK09267 flavodoxin FldA; Vali 20.2 3E+02 0.0066 20.8 5.4 9 112-120 50-58 (169)
366 cd03041 GST_N_2GST_N GST_N fam 20.2 2.5E+02 0.0055 18.0 6.4 19 114-132 4-22 (77)
367 PRK00366 ispG 4-hydroxy-3-meth 20.1 1.3E+02 0.0027 26.6 3.4 31 212-242 326-356 (360)
368 PF05209 MinC_N: Septum format 20.0 70 0.0015 22.3 1.6 36 106-147 43-78 (99)
No 1
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=100.00 E-value=2.5e-43 Score=288.17 Aligned_cols=233 Identities=74% Similarity=1.132 Sum_probs=201.4
Q ss_pred CCccCCCccccccCCcccccccccCCcchhccccccCCCcccccccccCCCCCcccCCcccCCCCCCccccccccccchh
Q 026066 1 MASYSMPFSAAFSSPLRHFTQIKTCPAAWASSMAASWTPTNSIKSSIGSAKPGFLQHGLFSQSSNLPGFFVKRRSFGVHA 80 (244)
Q Consensus 1 ~~~~~ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (244)
|++++- ++++.+++...+...+++++ ++++ +|+.+++.++++++|+++++++++++.++...++|.+.+..
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (236)
T PLN02399 1 MVSLTT-SSSSYASFKTVFNSSPPPPS------MAFL--VPSLKSSTGISKSAFLSNGFSLKSPNSPGFLSKSRSFGVYA 71 (236)
T ss_pred CCcccc-ccccccccccccccCCCCCc------cccc--cceeeeccccccchhhccccccccCCCcccccccccccccc
Confidence 444441 34445555665665544433 2244 88999999999999999999999999999999999999888
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCH
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~ 160 (244)
....|+.+|+|+++|++|+.++|++++||++||+||++||++|..++++|++++++|+++|++||+|++|+++.+++++.
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999998777777888
Q ss_pred HHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
+++.+|+.++++++||++.+.|.+|..+.+.|++++...++..++.+.|+|++||||++|+|++++.|..++++++++|+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~ 231 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQ 231 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 99999986688999999977777787788999988766666666678889999999999999999999999999999998
Q ss_pred hc
Q 026066 241 LS 242 (244)
Q Consensus 241 ~~ 242 (244)
++
T Consensus 232 ~l 233 (236)
T PLN02399 232 KL 233 (236)
T ss_pred HH
Confidence 75
No 2
>PLN02412 probable glutathione peroxidase
Probab=100.00 E-value=1.1e-32 Score=216.47 Aligned_cols=159 Identities=71% Similarity=1.192 Sum_probs=141.5
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 163 (244)
..+.+|+|+++|.+|+.++|++++||++||+||++||+.|..+++.|++++++|+++|++||+|++|++..++.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999997666666777777
Q ss_pred HHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
.++..++++++||++.+.|.++....+.|+++....++..+..+.++|++||||++|+|++++.|..+++++++.|+++
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 7765588999999997767777778999998887766666667888899999999999999999999999999988764
No 3
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=2.5e-32 Score=215.93 Aligned_cols=156 Identities=46% Similarity=0.849 Sum_probs=141.8
Q ss_pred CcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHH
Q 026066 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 165 (244)
+.+++|+++|++|+.++|++|+||+|||+|||+||+.|. +++.|++++++|+++|++||+|++|+++.+++++.+++.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 368999999999999999999999999999999999996 7999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCC--------------------CcCCccccceeEEEECCCCcEEEe
Q 026066 166 FACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG--------------------FLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 166 ~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~--------------------~~~~~i~~~P~~~lID~~G~i~~~ 225 (244)
|++++++++||++.+.|++|....++|++|+...+. ..+..|.|+.+.||||++|+++.+
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r 161 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR 161 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence 995579999999999999999999999999875541 123469999999999999999999
Q ss_pred cCCCCChhh--HHHHHhhc
Q 026066 226 YPPTTSPFQ--IEVHFLLS 242 (244)
Q Consensus 226 ~~g~~~~~~--l~~~l~~~ 242 (244)
|.+...|++ |+++|++.
T Consensus 162 ~~~~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 162 FSPDMTPEDPIVMESIKLA 180 (183)
T ss_pred ECCCCCCCHHHHHHHHHHH
Confidence 999988877 88888753
No 4
>PTZ00056 glutathione peroxidase; Provisional
Probab=100.00 E-value=4.5e-32 Score=218.29 Aligned_cols=160 Identities=39% Similarity=0.739 Sum_probs=139.0
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHH
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 161 (244)
...+..+|+|+++|.+|+.++|++++||+|||+||++||++|+.++|.|++++++|+++|++||+|++|++++++.++.+
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e 92 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK 92 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999987777778899
Q ss_pred HHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCc---C--CccccceeEEEECCCCcEEEecCCCCChhhHH
Q 026066 162 EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL---G--DLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~---~--~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~ 236 (244)
++++|+ ++++++||++.|.+++|....+++++++....... + ..+.|.|++||||++|+|++++.|..++++++
T Consensus 93 ~~~~f~-~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~ 171 (199)
T PTZ00056 93 DIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELE 171 (199)
T ss_pred HHHHHH-HHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHH
Confidence 999999 88999999998877888878888887764332211 1 13556678999999999999999998888888
Q ss_pred HHHhhc
Q 026066 237 VHFLLS 242 (244)
Q Consensus 237 ~~l~~~ 242 (244)
+.|+++
T Consensus 172 ~~I~~l 177 (199)
T PTZ00056 172 KKIAEL 177 (199)
T ss_pred HHHHHH
Confidence 888753
No 5
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.1e-31 Score=199.70 Aligned_cols=155 Identities=56% Similarity=1.054 Sum_probs=148.0
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHH
Q 026066 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF 166 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~ 166 (244)
.+.||++++++|++++|++|+||++||+..|+.|+... +...|+.||++|+++|++|+++.+|+|+++++++.+++.+|
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence 57899999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcceeeecCCCCCCcchhhHhhhhccCC-CcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 167 ACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGG-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 167 ~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~-~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
++.+|+.+||++...+++|...+++|++|+....+ ..+..|+|+.+.||||++|+|+.|+.+...|++++.+|++.
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~l 159 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKL 159 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHH
Confidence 99999999999999999999999999999988765 56788999999999999999999999999999999988864
No 6
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.98 E-value=1.8e-31 Score=206.60 Aligned_cols=151 Identities=60% Similarity=1.105 Sum_probs=125.7
Q ss_pred ccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+|+|+++|++|+.++|++++||+|||+||++||+ |..++|.|++++++|+++|++||+|++|.++.++.++.+++++|+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~ 80 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC 80 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence 6999999999999999999999999999999999 999999999999999999999999999865555567788999999
Q ss_pred HhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
.++++++||++.|.|.++......|+++.....+..+..+.+.+++||||++|+|++++.|..++++++++|
T Consensus 81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~i 152 (152)
T cd00340 81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152 (152)
T ss_pred HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhcC
Confidence 434899999997666566656677776544333222233556679999999999999999999888887654
No 7
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=196.13 Aligned_cols=160 Identities=63% Similarity=1.082 Sum_probs=153.5
Q ss_pred ccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHH
Q 026066 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 162 (244)
.....+.||+.+|++|+.++|++|+||++||...|+.|+....+..+|++|+++|+++|++|+++.+++++.+++++.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+..+++.+++..||++.+.|++|....++|++++...++.+++.|+|+.+.||||+||+++.||....++.+++.+|+++
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l 168 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL 168 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999998888764
No 8
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.97 E-value=3.8e-30 Score=204.92 Aligned_cols=159 Identities=45% Similarity=0.813 Sum_probs=132.2
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEE-EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~v-ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 162 (244)
.++.+|+|+++|.+|+.++|++++||++ |+.||++|||+|+.++|.|++++++|+++|++||+|++|++..+++++.++
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 3567899999999999999999999954 566799999999999999999999999999999999998765566667788
Q ss_pred HHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCc--CCccccce---eEEEECCCCcEEEecCCCCChhhHHH
Q 026066 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL--GDLVKWNF---EKFLVDKNGKVIERYPPTTSPFQIEV 237 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~--~~~i~~~P---~~~lID~~G~i~~~~~g~~~~~~l~~ 237 (244)
+.+|+.++++++||++.|.|.++....++|+++....+... ...+..+| ++||||++|+|++++.|..+++++++
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 99998568899999998777787777889988777554221 11233345 57999999999999999999888888
Q ss_pred HHhhc
Q 026066 238 HFLLS 242 (244)
Q Consensus 238 ~l~~~ 242 (244)
.|+++
T Consensus 176 ~I~~l 180 (183)
T PTZ00256 176 DIEKL 180 (183)
T ss_pred HHHHH
Confidence 88764
No 9
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.97 E-value=3.7e-30 Score=199.42 Aligned_cols=151 Identities=40% Similarity=0.766 Sum_probs=129.0
Q ss_pred ccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+.+|+++|++|+.++|++++||++||+||++||++|..+++.|++++++|+++|++||+|++++++.++.++.+.+.+|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999877777778899999999
Q ss_pred HhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+++++++||++.|.+..+......|+++....++ .+.|+.++||||++|+|++++.|..++++++++|+++
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~----~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKK----EPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCC----CCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 4348999999977666666667777765432221 1233455999999999999999999999999999864
No 10
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-27 Score=181.61 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=122.0
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
.+.+|+++|||+|++.+|+.++|++++||+|||+|| ..++|.|..|+..+++.+++|++.|.+||+||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 457999999999999999999999999999999998 8999999999999999999999999999999976 8
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccC-CCcCCccccceeEEEECCCCcEEEecCCCC---ChhhH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTT---SPFQI 235 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~-~~~~~~i~~~P~~~lID~~G~i~~~~~g~~---~~~~l 235 (244)
.+.+++|+ ++++++|++++|.+ ..+.+.|+..+.... |... .-..+.+||||++|+|++.+.... ..+++
T Consensus 75 ~~~~~~F~-~k~~L~f~LLSD~~---~~v~~~ygv~~~k~~~gk~~--~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~v 148 (157)
T COG1225 75 PKSHKKFA-EKHGLTFPLLSDED---GEVAEAYGVWGEKKMYGKEY--MGIERSTFVIDPDGKIRYVWRKVKVKGHADEV 148 (157)
T ss_pred HHHHHHHH-HHhCCCceeeECCc---HHHHHHhCcccccccCcccc--ccccceEEEECCCCeEEEEecCCCCcccHHHH
Confidence 99999998 89999999996543 447888887664321 1110 112399999999999999984433 33456
Q ss_pred HHHHhhcc
Q 026066 236 EVHFLLSR 243 (244)
Q Consensus 236 ~~~l~~~~ 243 (244)
.+.|+++.
T Consensus 149 l~~l~~l~ 156 (157)
T COG1225 149 LAALKKLA 156 (157)
T ss_pred HHHHHHhc
Confidence 66666543
No 11
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=1.7e-26 Score=177.38 Aligned_cols=138 Identities=29% Similarity=0.483 Sum_probs=108.2
Q ss_pred ccCCcccCeEEEc--CCCCeeecCCCCCCEEEEEEccC-CCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 83 ATEKSLYDFTVKD--IDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 83 ~~g~~~pdf~l~~--~~G~~v~l~~~~Gk~vll~F~a~-~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
++|+++|+|++++ .+|+.++|++++||++||+||++ |||+|..++|.|++++++|+++++.+|+|+.+.
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~-------- 72 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD-------- 72 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS--------
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC--------
Confidence 4799999999966 99999999999999999999999 999999999999999999999999999999873
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhh--hhccCCCcCCccccceeEEEECCCCcEEEecCCCCC--hhhH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFL--KSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS--PFQI 235 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l--~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~--~~~l 235 (244)
...+.+|+ ++++.+|+++.| .. ..+.+.|+.. .....+ ..+|++||||++|+|++++.|..+ ..++
T Consensus 73 ~~~~~~~~-~~~~~~~~~~~D--~~-~~~~~~~~~~~~~~~~~~------~~~P~~~lId~~G~V~~~~~g~~~~~~~~~ 142 (146)
T PF08534_consen 73 DPPVREFL-KKYGINFPVLSD--PD-GALAKALGVTIMEDPGNG------FGIPTTFLIDKDGKVVYRHVGPDPDEESDL 142 (146)
T ss_dssp SHHHHHHH-HHTTTTSEEEEE--TT-SHHHHHTTCEEECCTTTT------SSSSEEEEEETTSBEEEEEESSBTTSHHSH
T ss_pred CHHHHHHH-HhhCCCceEEec--hH-HHHHHHhCCccccccccC------CeecEEEEEECCCEEEEEEeCCCCCCCCCh
Confidence 33488998 778999999955 22 3344444421 000000 144999999999999999998876 3345
Q ss_pred HHH
Q 026066 236 EVH 238 (244)
Q Consensus 236 ~~~ 238 (244)
++.
T Consensus 143 ~~~ 145 (146)
T PF08534_consen 143 EAV 145 (146)
T ss_dssp HHH
T ss_pred hhc
Confidence 544
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.93 E-value=2.4e-25 Score=172.57 Aligned_cols=148 Identities=17% Similarity=0.236 Sum_probs=116.9
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccC-CCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~-~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
...+|+.+|+|+++|.+|+.+++++++||++||+||++ ||+.|+.+++.|++++++++++|+++|+|+.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 45689999999999999999999999999999999976 78899999999999999999999999999976 6
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccC-CCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVH 238 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~-~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~ 238 (244)
.+++++|+ ++++++|+++.| .. ..+.+.|+....... +.....+ .|++||||++|+|++.+.|....+.+.+.
T Consensus 75 ~~~~~~~~-~~~~~~~~~l~D--~~-~~~~~~~gv~~~~~~~~~~~~~~--~~~~~lid~~G~i~~~~~g~~~~~~~~~~ 148 (154)
T PRK09437 75 PEKLSRFA-EKELLNFTLLSD--ED-HQVAEQFGVWGEKKFMGKTYDGI--HRISFLIDADGKIEHVFDKFKTSNHHDVV 148 (154)
T ss_pred HHHHHHHH-HHhCCCCeEEEC--CC-chHHHHhCCCcccccccccccCc--ceEEEEECCCCEEEEEEcCCCcchhHHHH
Confidence 78999998 778999999954 33 335555654321110 0000001 27889999999999999988767776666
Q ss_pred Hhhc
Q 026066 239 FLLS 242 (244)
Q Consensus 239 l~~~ 242 (244)
|+..
T Consensus 149 ~~~~ 152 (154)
T PRK09437 149 LDYL 152 (154)
T ss_pred HHHH
Confidence 6554
No 13
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.93 E-value=2.1e-25 Score=166.31 Aligned_cols=123 Identities=28% Similarity=0.479 Sum_probs=104.5
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccC-CCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVAS-RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~-~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 162 (244)
+|+++|+|++++.+|+.++|++++||++||.||.+ ||+.|..++++|++++++|+++|+.+++|+.| +.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 68999999999999999999999999999999988 99999999999999999999999999999987 6778
Q ss_pred HHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEe
Q 026066 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~ 225 (244)
+++|+ +.++.+||++.| .. ....+.|+..... .....|++||||++|+|+++
T Consensus 73 ~~~~~-~~~~~~~~~~~D--~~-~~~~~~~~~~~~~-------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFL-EEYGLPFPVLSD--PD-GELAKAFGIEDEK-------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHH-HHHTCSSEEEEE--TT-SHHHHHTTCEETT-------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhh-hhhccccccccC--cc-hHHHHHcCCcccc-------CCceEeEEEEECCCCEEEeC
Confidence 99998 788999999965 22 3355555533211 12245999999999999875
No 14
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.93 E-value=6e-25 Score=173.29 Aligned_cols=140 Identities=25% Similarity=0.413 Sum_probs=122.5
Q ss_pred hhhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 80 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
.....|..+|+|++.+.+|+.+++++++||+++|+||++||+.|+.+++.|++++++|++.++.+++|++|. +
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~ 105 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------T 105 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------C
Confidence 356789999999999999999999999999999999999999999999999999999998889999999883 6
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
.+++.+|+ ++++++|+++.| .+ ..+.+.|+ +...|++||||++|+|+..+.|..+.+++++.|
T Consensus 106 ~~~~~~~~-~~~~~~~~~~~d--~~-~~~~~~~~-------------v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 106 ELAVKNFV-NRYGLTFPVAID--KG-RQVIDAYG-------------VGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred HHHHHHHH-HHhCCCceEEEC--Cc-chHHHHcC-------------CCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 78899998 888999999843 33 23444444 444599999999999999999999999999999
Q ss_pred hhcc
Q 026066 240 LLSR 243 (244)
Q Consensus 240 ~~~~ 243 (244)
+++|
T Consensus 169 ~~~~ 172 (173)
T PRK03147 169 EKIK 172 (173)
T ss_pred HHhc
Confidence 9876
No 15
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.93 E-value=3.7e-25 Score=168.51 Aligned_cols=139 Identities=22% Similarity=0.369 Sum_probs=114.6
Q ss_pred CcccCeEEEcCCCCeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHH
Q 026066 86 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 86 ~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 164 (244)
+.+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|++++++++++|++||+|+.| +.++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 6899999999999999999999999999999976 678899
Q ss_pred HHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
+|+ ++++++|+++.|. .+ .+.+.|+......++ .....|++||||++|+|++.+.|....+.+.+.|+
T Consensus 73 ~~~-~~~~~~~~~l~D~--~~-~~~~~~gv~~~~~~~----~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~~ 140 (140)
T cd03017 73 KFA-EKYGLPFPLLSDP--DG-KLAKAYGVWGEKKKK----YMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVLE 140 (140)
T ss_pred HHH-HHhCCCceEEECC--cc-HHHHHhCCccccccc----cCCcceeEEEECCCCEEEEEEecCCccchHHHHhC
Confidence 998 7889999999553 32 355566543321111 11123899999999999999999988888888764
No 16
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.93 E-value=7.9e-25 Score=171.84 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=111.3
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCC-CCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~-C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
...+|+.+|+|+++|.+|+.++|++++||++||+||++| |++|..+++.|+++++++. |++||+|+.| +
T Consensus 17 ~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------~ 86 (167)
T PRK00522 17 LPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------L 86 (167)
T ss_pred CCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------C
Confidence 346899999999999999999999999999999999999 9999999999999999983 7999999987 5
Q ss_pred HHHHHHHHHhhcCCC-cceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC--CChhhHH
Q 026066 160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT--TSPFQIE 236 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~-~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~--~~~~~l~ 236 (244)
...+++|+ +++++. ++++. |..+....+.|+....... ..| + ..|++||||++|+|++.+.+. .+..+++
T Consensus 87 ~~~~~~f~-~~~~~~~~~~ls--D~~~~~~~~~~gv~~~~~~-~~g--~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 87 PFAQKRFC-GAEGLENVITLS--DFRDHSFGKAYGVAIAEGP-LKG--L-LARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred HHHHHHHH-HhCCCCCceEee--cCCccHHHHHhCCeecccc-cCC--c-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 67889998 788887 68884 4333346667765432100 001 1 127999999999999988533 3334555
Q ss_pred HHHhhc
Q 026066 237 VHFLLS 242 (244)
Q Consensus 237 ~~l~~~ 242 (244)
+.|+.+
T Consensus 160 ~~l~~l 165 (167)
T PRK00522 160 AALAAL 165 (167)
T ss_pred HHHHHh
Confidence 555544
No 17
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=2.4e-25 Score=177.60 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=108.9
Q ss_pred hhccCCcccCeEEEcCCC--CeeecCCC-CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDG--KDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G--~~v~l~~~-~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~ 157 (244)
...+|+.+|+|+++|++| +.++++++ +||++||+||++||++|+.++|.|+++++ +|++||+|+.|
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~------- 106 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK------- 106 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 346899999999999984 77777765 79999999999999999999999988754 47999999976
Q ss_pred CCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 026066 158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEV 237 (244)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~ 237 (244)
++.+++++|+ ++++.+|+++. .|..+. ....|+ +..+|++||||++|+|++++.|..+.+++++
T Consensus 107 ~~~~~~~~~~-~~~~~~~~~~~-~D~~~~-~~~~~g-------------v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~ 170 (185)
T PRK15412 107 DDRQKAISWL-KELGNPYALSL-FDGDGM-LGLDLG-------------VYGAPETFLIDGNGIIRYRHAGDLNPRVWES 170 (185)
T ss_pred CCHHHHHHHH-HHcCCCCceEE-EcCCcc-HHHhcC-------------CCcCCeEEEECCCceEEEEEecCCCHHHHHH
Confidence 3677899998 78899999532 343332 333343 4445999999999999999999999998888
Q ss_pred HHhhc
Q 026066 238 HFLLS 242 (244)
Q Consensus 238 ~l~~~ 242 (244)
.|+.+
T Consensus 171 ~i~~~ 175 (185)
T PRK15412 171 EIKPL 175 (185)
T ss_pred HHHHH
Confidence 87754
No 18
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.92 E-value=2.7e-24 Score=169.90 Aligned_cols=141 Identities=20% Similarity=0.222 Sum_probs=109.3
Q ss_pred cCCcccCeEEEcCCC----CeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 84 TEKSLYDFTVKDIDG----KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G----~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
+|+.+|+|++++.+| +.++|++++||++||+|| ++||+.|..+++.|++++++|.++|+.|++|++|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 588999999999988 789999999999999999 8999999999999999999999999999999987
Q ss_pred CHHHHHHHHHhh------cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC--
Q 026066 159 SNPEIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-- 230 (244)
Q Consensus 159 ~~~~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~-- 230 (244)
+.+...+|.... .+++|+++.| .. ..+.+.|+......+ ...|++||||++|+|++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l~D--~~-~~~~~~~gv~~~~~~-------~~~p~~~lID~~G~I~~~~~~~~~~ 142 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLLAD--PK-KKISRDYGVLDEEEG-------VALRGTFIIDPEGIIRHITVNDLPV 142 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEEEC--Cc-hhHHHHhCCccccCC-------ceeeEEEEECCCCeEEEEEecCCCC
Confidence 345556665221 4688999954 33 335566664322211 02289999999999999995543
Q ss_pred --ChhhHHHHHhhc
Q 026066 231 --SPFQIEVHFLLS 242 (244)
Q Consensus 231 --~~~~l~~~l~~~ 242 (244)
+.+++.+.|++.
T Consensus 143 ~~~~~~il~~l~~~ 156 (173)
T cd03015 143 GRSVDETLRVLDAL 156 (173)
T ss_pred CCCHHHHHHHHHHh
Confidence 345666666553
No 19
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.92 E-value=2.2e-24 Score=166.01 Aligned_cols=141 Identities=20% Similarity=0.339 Sum_probs=111.2
Q ss_pred ccCCcccCeEEEcCCCCeeecCCCCC-CEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCH
Q 026066 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~G-k~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~ 160 (244)
.+|+.+|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++|+++|+|+.| +.
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~~ 73 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------SP 73 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------CH
Confidence 57999999999999999999999999 99888887 9999999999999999999999999999999976 57
Q ss_pred HHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC--C--hhhHH
Q 026066 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--S--PFQIE 236 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~--~--~~~l~ 236 (244)
+.+++|+ ++++++|+++.|.+..+ .+...|+......+ + ..|++||||++|+|++++.|.. . ..+++
T Consensus 74 ~~~~~~~-~~~~~~~~~~~D~~~~~-~~~~~~g~~~~~~~------~-~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 74 FSLRAWA-EENGLTFPLLSDFWPHG-EVAKAYGVFDEDLG------V-AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred HHHHHHH-HhcCCCceEecCCCchh-HHHHHhCCccccCC------C-ccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence 7899998 78899999995432112 24444543321110 1 1268999999999999998865 2 23455
Q ss_pred HHHh
Q 026066 237 VHFL 240 (244)
Q Consensus 237 ~~l~ 240 (244)
+.|+
T Consensus 145 ~~~~ 148 (149)
T cd03018 145 EALD 148 (149)
T ss_pred HHhh
Confidence 5553
No 20
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.92 E-value=2.7e-24 Score=164.56 Aligned_cols=137 Identities=19% Similarity=0.196 Sum_probs=108.1
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCC-CCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASR-CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~-C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~ 162 (244)
+|+.+|+|++++.+|+.++|++++||++||+||++| |++|+.+++.|++++++++ |+.||+|++| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999988 6999999999999999984 7999999987 5778
Q ss_pred HHHHHHhhcCC-CcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC--ChhhHHHHH
Q 026066 163 IKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT--SPFQIEVHF 239 (244)
Q Consensus 163 ~~~~~~~~~~~-~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~--~~~~l~~~l 239 (244)
+++|. ++++. +|+++.| .......+.|+......+ ...|++||||++|+|++.+.|.. ...++++.|
T Consensus 72 ~~~~~-~~~~~~~~~~l~D--~~~~~~~~~~gv~~~~~~-------~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 72 QKRWC-GAEGVDNVTTLSD--FRDHSFGKAYGVLIKDLG-------LLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHH-HhcCCCCceEeec--CcccHHHHHhCCeeccCC-------ccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 89998 67775 7998854 322335556664322111 01389999999999999997653 334566655
Q ss_pred h
Q 026066 240 L 240 (244)
Q Consensus 240 ~ 240 (244)
+
T Consensus 142 ~ 142 (143)
T cd03014 142 A 142 (143)
T ss_pred h
Confidence 3
No 21
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=2.5e-24 Score=173.88 Aligned_cols=143 Identities=22% Similarity=0.307 Sum_probs=111.5
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCCCEEEE-EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCH
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll-~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~ 160 (244)
+.+|+.+|+|++.+.+| .++|++++||++|| +||++||++|..+++.|++++++|+++|++||+||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 35899999999999888 69999999998776 5789999999999999999999999999999999987 56
Q ss_pred HHHHHHHH---hhcC--CCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEec----CCCCC
Q 026066 161 PEIKEFAC---TRFK--AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY----PPTTS 231 (244)
Q Consensus 161 ~~~~~~~~---~~~~--~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~----~g~~~ 231 (244)
+.+.+|++ ++++ ++||++.| .++ .+.+.|+.+....+ . ..|++||||++|+|++.. .+..+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll~D--~~~-~ia~~ygv~~~~~g----~---~~p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVIAD--IDK-ELAREYNLIDENSG----A---TVRGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEEEC--CCh-HHHHHcCCccccCC----c---EEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 66666653 2444 58999955 333 46677775443222 1 239999999999999866 33346
Q ss_pred hhhHHHHHhhcc
Q 026066 232 PFQIEVHFLLSR 243 (244)
Q Consensus 232 ~~~l~~~l~~~~ 243 (244)
.+++.+.|+.++
T Consensus 143 ~~ellr~l~~l~ 154 (202)
T PRK13190 143 IDEIIRITKALQ 154 (202)
T ss_pred HHHHHHHHHHhh
Confidence 778887777653
No 22
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=2.5e-24 Score=172.00 Aligned_cols=142 Identities=16% Similarity=0.214 Sum_probs=109.5
Q ss_pred ccCCcccCeEEEc-CCCC--eeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 83 ATEKSLYDFTVKD-IDGK--DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 83 ~~g~~~pdf~l~~-~~G~--~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
.+|+.+|+|++++ .+|+ .+++++++||++||+|| ++||++|+.+++.|++++++|+++|++||+|++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 4799999999999 5776 68888999999999999 9999999999999999999999999999999987
Q ss_pred CHHHHHHHHHhh---cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC----C
Q 026066 159 SNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S 231 (244)
Q Consensus 159 ~~~~~~~~~~~~---~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~----~ 231 (244)
+.+.+++|.... .+++||++.| .. ..+.+.|+......+ ...|++||||++|+|++.+.... +
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD--~~-~~~a~~~gv~~~~~g-------~~~p~tfiID~~G~I~~~~~~~~~~~~~ 144 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGD--PT-GVLTRNFGVLIEEAG-------LADRGTFVIDPEGVIQAVEITDNGIGRD 144 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEEC--Cc-cHHHHHhCCcccCCC-------ceeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 466777776321 3688999954 33 346666664432111 02399999999999999875432 4
Q ss_pred hhhHHHHHhhc
Q 026066 232 PFQIEVHFLLS 242 (244)
Q Consensus 232 ~~~l~~~l~~~ 242 (244)
.+++.+.|+..
T Consensus 145 ~~~ll~~l~~~ 155 (187)
T TIGR03137 145 ASELLRKIKAA 155 (187)
T ss_pred HHHHHHHHHHh
Confidence 45666666543
No 23
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=3e-24 Score=169.22 Aligned_cols=141 Identities=23% Similarity=0.365 Sum_probs=114.6
Q ss_pred CCcccCeEEEcCCCCeeecCCC-CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHH
Q 026066 85 EKSLYDFTVKDIDGKDVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 85 g~~~pdf~l~~~~G~~v~l~~~-~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 163 (244)
|+.+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|++++++|+++++++|+|++|+...++.++.+++
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 5789999999999999999998 899999999999999999999999999999998899999999985433334678999
Q ss_pred HHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC---------CCCChhh
Q 026066 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP---------PTTSPFQ 234 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~---------g~~~~~~ 234 (244)
++|+ ++++++|+++.| ..+ .+.+.|+ +...|.+||||++|+|++... +..+.++
T Consensus 81 ~~~~-~~~~~~~~~l~D--~~~-~~~~~~~-------------v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 81 KAKA-KEHGYPFPYLLD--ETQ-EVAKAYG-------------AACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHH-HHCCCCceEEEC--Cch-HHHHHcC-------------CCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 9998 788999999954 332 2444444 334599999999999997741 1234466
Q ss_pred HHHHHhhc
Q 026066 235 IEVHFLLS 242 (244)
Q Consensus 235 l~~~l~~~ 242 (244)
+.+.|+++
T Consensus 144 ~~~~i~~~ 151 (171)
T cd02969 144 LRAALDAL 151 (171)
T ss_pred HHHHHHHH
Confidence 77777653
No 24
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.91 E-value=2.9e-24 Score=169.66 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=107.7
Q ss_pred hhccCCcccCeEEEcCCCC--eeecCCC-CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGK--DVPLSKF-KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~--~v~l~~~-~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~ 157 (244)
...+|.++|+|+++|.+|+ .++++++ +||+++|+||++||++|+.++|.++++++ +|+++|+|+.|
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~------- 101 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK------- 101 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 3468999999999999997 4555565 79999999999999999999999987764 46999999976
Q ss_pred CCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 026066 158 GSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEV 237 (244)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~ 237 (244)
++.++..+|+ ++++++|+.+. .|.++. ....|+ +..+|++|+||++|+|++++.|..+.+++++
T Consensus 102 ~~~~~~~~~~-~~~~~~f~~v~-~D~~~~-~~~~~~-------------v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~ 165 (173)
T TIGR00385 102 DQSQNALKFL-KELGNPYQAIL-IDPNGK-LGLDLG-------------VYGAPETFLVDGNGVILYRHAGPLNNEVWTE 165 (173)
T ss_pred CChHHHHHHH-HHcCCCCceEE-ECCCCc-hHHhcC-------------CeeCCeEEEEcCCceEEEEEeccCCHHHHHH
Confidence 2566778898 78889998432 343332 444454 3334999999999999999999999999988
Q ss_pred HHhhc
Q 026066 238 HFLLS 242 (244)
Q Consensus 238 ~l~~~ 242 (244)
.|+++
T Consensus 166 ~l~~~ 170 (173)
T TIGR00385 166 GFLPA 170 (173)
T ss_pred HHHHH
Confidence 88764
No 25
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=9.6e-24 Score=167.88 Aligned_cols=144 Identities=11% Similarity=0.218 Sum_probs=114.0
Q ss_pred hccCCcccCeEEEcC-CC--CeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCC
Q 026066 82 AATEKSLYDFTVKDI-DG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~-~G--~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~ 157 (244)
+.+|+++|+|+.... +| ..++|++++||++||+|| ++||++|..|++.|++++++|+++|++||+||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 358999999999884 44 567888999999999999 9999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHhh---cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC----C
Q 026066 158 GSNPEIKEFACTR---FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----T 230 (244)
Q Consensus 158 ~~~~~~~~~~~~~---~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~----~ 230 (244)
+...+++|.++. .+++||++.| .+ ..+.+.|+.+....+ + ..|++||||++|+|++.+... .
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpllsD--~~-~~ia~~ygv~~~~~g------~-~~r~tfIID~~G~I~~~~~~~~~~~~ 143 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMIGD--PT-GALTRNFDNMREDEG------L-ADRATFVVDPQGIIQAIEVTAEGIGR 143 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEEEc--Cc-hHHHHHcCCCcccCC------c-eeeEEEEECCCCEEEEEEEeCCCCCC
Confidence 688899998432 4789999955 33 457777876533221 1 129999999999999886432 2
Q ss_pred ChhhHHHHHhhcc
Q 026066 231 SPFQIEVHFLLSR 243 (244)
Q Consensus 231 ~~~~l~~~l~~~~ 243 (244)
+.+++.+.|+.++
T Consensus 144 ~~~eil~~l~alq 156 (187)
T PRK10382 144 DASDLLRKIKAAQ 156 (187)
T ss_pred CHHHHHHHHHhhh
Confidence 5667777776654
No 26
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.91 E-value=3.7e-24 Score=160.56 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=102.0
Q ss_pred CcccCeEEEcCCC--CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHH
Q 026066 86 KSLYDFTVKDIDG--KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 86 ~~~pdf~l~~~~G--~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 163 (244)
+.+|+|+++|++| +.+++++++||++||+||++||++|+.+++.|+++.+++ +++||+|+.+ ++.+++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~ 70 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENA 70 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHH
Confidence 3689999999999 889999999999999999999999999999999998775 4999999976 378899
Q ss_pred HHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhH
Q 026066 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQI 235 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l 235 (244)
++|+ ++++++|+.+. .|..+ .+...|+ +..+|++||||++|+|+.++.|..+.+.|
T Consensus 71 ~~~~-~~~~~~~~~~~-~D~~~-~~~~~~~-------------v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 71 LAWL-ARHGNPYAAVG-FDPDG-RVGIDLG-------------VYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHH-HhcCCCCceEE-ECCcc-hHHHhcC-------------CCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9998 78888887442 34332 3444454 34459999999999999999998877654
No 27
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.91 E-value=1.5e-23 Score=170.34 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=111.1
Q ss_pred ccCCcccCeEEEcCCCCeeecCCCCCCEE-EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHH
Q 026066 83 ATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~Gk~v-ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 161 (244)
.+|+.+|+|++.+.+|+...+++++||++ |+.||++|||+|..+++.|++++++|+++|++||+||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 48999999999999999888899999975 568889999999999999999999999999999999988 566
Q ss_pred HHHHHHH--h---hcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCC----CCCh
Q 026066 162 EIKEFAC--T---RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP----TTSP 232 (244)
Q Consensus 162 ~~~~~~~--~---~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g----~~~~ 232 (244)
.+.+|.. + ..+++||++.| .++ .+...|+.+....+ ....|++||||++|+|++.+.. ..+.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil~D--~~~-~va~~yg~~~~~~~------~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVIAD--DLG-KVSNQLGMIHPGKG------TNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEEEC--CCc-hHHHHcCCCccCCC------CceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 6665542 2 35788999954 333 46777776543211 1124999999999999987532 1245
Q ss_pred hhHHHHHhhcc
Q 026066 233 FQIEVHFLLSR 243 (244)
Q Consensus 233 ~~l~~~l~~~~ 243 (244)
+++.+.|+.++
T Consensus 146 ~eilr~l~~lq 156 (215)
T PRK13599 146 DEILRALKALQ 156 (215)
T ss_pred HHHHHHHHHhh
Confidence 67777776553
No 28
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.90 E-value=2.7e-23 Score=169.01 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=109.1
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCCCEEEE-EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCH
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll-~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~ 160 (244)
+.+|+.+|+|++.+.+|+....++++||++|| +||++||++|..|++.|++++++|+++|++||+||+| +.
T Consensus 7 ~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s~ 78 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------SN 78 (215)
T ss_pred ccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------CH
Confidence 45899999999999999744335589997776 7789999999999999999999999999999999988 56
Q ss_pred HHHHHHHH---h--hcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC----C
Q 026066 161 PEIKEFAC---T--RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S 231 (244)
Q Consensus 161 ~~~~~~~~---~--~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~----~ 231 (244)
..+++|.. + ..+++||++.| .+ ..+.+.|+.+.....+ ...|++||||++|+|++.+.+.. +
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPllsD--~~-~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~gr~ 149 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPIIAD--PM-GNVAKRLGMIHAESST------ATVRAVFIVDDKGTVRLILYYPMEIGRN 149 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEEEC--Cc-hHHHHHcCCcccccCC------ceeEEEEEECCCCEEEEEEecCCCCCCC
Confidence 66666542 2 24688999955 33 4467777765432111 12399999999999998754332 5
Q ss_pred hhhHHHHHhhcc
Q 026066 232 PFQIEVHFLLSR 243 (244)
Q Consensus 232 ~~~l~~~l~~~~ 243 (244)
.+++.+.|+.++
T Consensus 150 ~~eilr~l~alq 161 (215)
T PRK13191 150 IDEILRAIRALQ 161 (215)
T ss_pred HHHHHHHHHHhh
Confidence 567777776543
No 29
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.90 E-value=2.7e-23 Score=168.04 Aligned_cols=141 Identities=12% Similarity=0.170 Sum_probs=107.7
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCC-CEEE-EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKG-KVLL-IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~G-k~vl-l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 161 (244)
+|+.+|+|++.+.+| .+++++++| |++| ++||++|||.|..+++.|++++++|+++|++||+|++| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 588999999999998 489999998 7654 47889999999999999999999999999999999988 566
Q ss_pred HHHHHHHhh------cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC----C
Q 026066 162 EIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT----S 231 (244)
Q Consensus 162 ~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~----~ 231 (244)
.+.+|+ +. .+++||++.| .+ ..+.+.|+.+....+ . ....|.+||||++|+|++.+.+.. +
T Consensus 72 ~~~~~~-~~i~~~~~~~~~fpil~D--~~-~~ia~~yg~~~~~~~----~-~~~~r~~fiID~~G~I~~~~~~~~~~gr~ 142 (203)
T cd03016 72 SHIKWI-EDIEEYTGVEIPFPIIAD--PD-REVAKLLGMIDPDAG----S-TLTVRAVFIIDPDKKIRLILYYPATTGRN 142 (203)
T ss_pred HHHHHH-hhHHHhcCCCCceeEEEC--ch-HHHHHHcCCccccCC----C-CceeeEEEEECCCCeEEEEEecCCCCCCC
Confidence 666665 32 6899999955 33 336666765432111 0 112388999999999998875432 4
Q ss_pred hhhHHHHHhhc
Q 026066 232 PFQIEVHFLLS 242 (244)
Q Consensus 232 ~~~l~~~l~~~ 242 (244)
.+++.+.|+++
T Consensus 143 ~~ell~~l~~l 153 (203)
T cd03016 143 FDEILRVVDAL 153 (203)
T ss_pred HHHHHHHHHHH
Confidence 56777777654
No 30
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.90 E-value=1.4e-23 Score=157.31 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=93.7
Q ss_pred CCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 98 G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
|+.++|++++||++||+||++||++|..+++.|++++++|+++++++|+|+.+++ ..+++.+++++|+ ++++++||+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~--~~~~~~~~~~~~~-~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEF--AFERDLANVKSAV-LRYGITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcc--ccccCHHHHHHHH-HHcCCCCCE
Confidence 4789999999999999999999999999999999999999999999999987532 1235688999998 889999999
Q ss_pred eeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC
Q 026066 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~ 229 (244)
+.| ..+ .+...|+ +.++|++||||++|+|++++.|.
T Consensus 90 ~~D--~~~-~~~~~~~-------------v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 90 AND--NDY-ATWRAYG-------------NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EEC--Cch-HHHHHhC-------------CCcCCeEEEECCCCcEEEEEecC
Confidence 954 332 2333343 34459999999999999999875
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.90 E-value=5.3e-23 Score=164.60 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=103.4
Q ss_pred hccCCcccCeEEEcCCCCeeecC--CCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLS--KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~--~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
..+|+.+|+|+++|.+|+.+++. +++||++||+||++||++|+.++|.++++++++ ++.+++|+.| +
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------~ 114 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------T 114 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------C
Confidence 56899999999999999999995 579999999999999999999999999988653 5788999843 6
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
.+++++|+ ++++++++.+. . . ....+.|+ +...|++||||++|+|+++.. ....+++++.|
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~-~--~-~~i~~~y~-------------v~~~P~~~lID~~G~I~~~g~-~~~~~~le~ll 175 (189)
T TIGR02661 115 PAEHRRFL-KDHELGGERYV-V--S-AEIGMAFQ-------------VGKIPYGVLLDQDGKIRAKGL-TNTREHLESLL 175 (189)
T ss_pred HHHHHHHH-HhcCCCcceee-c--h-hHHHHhcc-------------CCccceEEEECCCCeEEEccC-CCCHHHHHHHH
Confidence 78899999 78888877652 1 1 22344444 344599999999999998743 23556777777
Q ss_pred hhc
Q 026066 240 LLS 242 (244)
Q Consensus 240 ~~~ 242 (244)
+..
T Consensus 176 ~~l 178 (189)
T TIGR02661 176 EAD 178 (189)
T ss_pred HHH
Confidence 654
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.89 E-value=2.7e-23 Score=158.65 Aligned_cols=137 Identities=22% Similarity=0.311 Sum_probs=104.9
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCC-ChHHHHHHHHHHHHHhhCC---cEEEEEecCCCCCCCCCCHHH
Q 026066 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGL-TPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~-C~~~~~~L~~l~~~~~~~~---~~vv~vs~d~~~~~~~~~~~~ 162 (244)
.+|+|++.|.+|+.+++.+++||++||+||++||+. |..+++.|+++++++++++ +++|+|++|+ ..++.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence 379999999999999999999999999999999997 9999999999999999875 9999999984 2356788
Q ss_pred HHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccC-CCcCCccccceeEEEECCCCcEEEecCC
Q 026066 163 IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-GFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 163 ~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~-~~~~~~i~~~P~~~lID~~G~i~~~~~g 228 (244)
+++|+ ++++.+|+++.+.+.....+.+.|+....... ...+..+.+.|.+||||++|+|+++|.+
T Consensus 77 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 77 LKAYA-KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHHHH-HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 99998 77888999995432111223444443222110 0011224456899999999999998864
No 33
>PRK15000 peroxidase; Provisional
Probab=99.89 E-value=1e-22 Score=164.06 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=107.4
Q ss_pred ccCCcccCeEEEcCC--CC---eeecCCC-CCCEEEEEEcc-CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCC
Q 026066 83 ATEKSLYDFTVKDID--GK---DVPLSKF-KGKVLLIVNVA-SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ 155 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~--G~---~v~l~~~-~Gk~vll~F~a-~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~ 155 (244)
.+|+.+|+|++++.. |+ .++++++ +||++||+||. +||++|+.++++|++++++|+++|++||+||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 479999999999974 44 3566666 89999999997 699999999999999999999999999999987
Q ss_pred CCCCHHHHHHHHH---hhcC---CCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC
Q 026066 156 EPGSNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 156 ~~~~~~~~~~~~~---~~~~---~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~ 229 (244)
+.+.+++|.+ ++.+ ++||++.| .+ ..+.+.|+.+....+ . ..|.+||||++|+|++.+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpllsD--~~-~~ia~~ygv~~~~~g----~---~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMVAD--VK-REIQKAYGIEHPDEG----V---ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEEEC--CC-cHHHHHcCCccCCCC----c---EEeEEEEECCCCEEEEEEecC
Confidence 5666666652 2233 68999955 33 346777775433221 1 239999999999999987664
Q ss_pred C----ChhhHHHHHhhc
Q 026066 230 T----SPFQIEVHFLLS 242 (244)
Q Consensus 230 ~----~~~~l~~~l~~~ 242 (244)
. +.+++.+.|+.+
T Consensus 145 ~~~gr~~~eilr~l~al 161 (200)
T PRK15000 145 LPLGRNIDEMLRMVDAL 161 (200)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 4 445666666554
No 34
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.89 E-value=7.9e-23 Score=169.55 Aligned_cols=143 Identities=18% Similarity=0.202 Sum_probs=111.0
Q ss_pred hccCCcccCeEEEc-CCCC--eeecCCC-CCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCC
Q 026066 82 AATEKSLYDFTVKD-IDGK--DVPLSKF-KGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 82 ~~~g~~~pdf~l~~-~~G~--~v~l~~~-~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~ 156 (244)
..+|+.+|+|++++ .+|+ .++|+++ +||++||+|| ++||++|..|++.|++++++|+++|++||+||+|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D------ 141 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD------ 141 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence 46999999999988 5664 6899998 8988888877 9999999999999999999999999999999987
Q ss_pred CCCHHHHHHHHHh------hcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCC--
Q 026066 157 PGSNPEIKEFACT------RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-- 228 (244)
Q Consensus 157 ~~~~~~~~~~~~~------~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g-- 228 (244)
+...+++|..+ ..+++||++.| .+ ..+.+.|+.+.. .| ...|++||||++|+|++.+..
T Consensus 142 --s~~~h~aw~~~~~~~~g~~~l~fPlLsD--~~-~~iakayGv~~~-~g-------~a~R~tFIID~dG~I~~~~~~~~ 208 (261)
T PTZ00137 142 --SPFSHKAWKELDVRQGGVSPLKFPLFSD--IS-REVSKSFGLLRD-EG-------FSHRASVLVDKAGVVKHVAVYDL 208 (261)
T ss_pred --CHHHHHHHHhhhhhhccccCcceEEEEc--CC-hHHHHHcCCCCc-CC-------ceecEEEEECCCCEEEEEEEeCC
Confidence 46677777632 25788999965 33 446677775432 11 123999999999999987632
Q ss_pred --CCChhhHHHHHhhcc
Q 026066 229 --TTSPFQIEVHFLLSR 243 (244)
Q Consensus 229 --~~~~~~l~~~l~~~~ 243 (244)
..+.+++.+.|+.++
T Consensus 209 ~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 209 GLGRSVDETLRLFDAVQ 225 (261)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 225667777776654
No 35
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.89 E-value=1.8e-23 Score=159.18 Aligned_cols=108 Identities=11% Similarity=0.152 Sum_probs=83.0
Q ss_pred CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC-------CcEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 026066 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-------GFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (244)
Q Consensus 99 ~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~-------~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~ 171 (244)
+.++|++++||+|+|+|||+||++|+.++|.|.++|++++++ +++||+|+.|. +.+++++|+ ++.
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~-~~~ 87 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFL-KDM 87 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHH-HHC
Confidence 346788999999999999999999999999999999988754 69999999873 567789998 777
Q ss_pred CCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC
Q 026066 172 KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 172 ~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
++.|+.+...+..+..+...|+ +..+|++||||++|+|+.+..
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~-------------v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFS-------------VEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred CCCceeecccchHHHHHHHHcC-------------CCCCCEEEEECCCCcEEeeCh
Confidence 8776543212211122333333 445599999999999998753
No 36
>PRK13189 peroxiredoxin; Provisional
Probab=99.89 E-value=2.3e-22 Score=164.42 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=108.7
Q ss_pred hccCCcccCeEEEcCCCCeeecCC-CCCCEEEE-EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~-~~Gk~vll-~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
+.+|+.+|+|++.+.+|+ +++.+ ++||++|| +||++||++|..+++.|++++++|+++|++||+||+| +
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D--------~ 79 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID--------Q 79 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------C
Confidence 468999999999999986 67777 49996665 6789999999999999999999999999999999988 5
Q ss_pred HHHHHHHHHh---h--cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC----C
Q 026066 160 NPEIKEFACT---R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT----T 230 (244)
Q Consensus 160 ~~~~~~~~~~---~--~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~----~ 230 (244)
...+.+|+++ . .+++||++.| .. ..+.+.|+.+....++ ...|++||||++|+|++.+.+. .
T Consensus 80 ~~~h~aw~~~~~~~~g~~i~fPllsD--~~-~~ia~~ygv~~~~~~~------~~~r~tfIID~~G~Ir~~~~~~~~~gr 150 (222)
T PRK13189 80 VFSHIKWVEWIKEKLGVEIEFPIIAD--DR-GEIAKKLGMISPGKGT------NTVRAVFIIDPKGIIRAILYYPQEVGR 150 (222)
T ss_pred HHHHHHHHHhHHHhcCcCcceeEEEc--Cc-cHHHHHhCCCccccCC------CceeEEEEECCCCeEEEEEecCCCCCC
Confidence 6677777632 1 3578999955 33 3466777754322111 1239999999999999876432 2
Q ss_pred ChhhHHHHHhhc
Q 026066 231 SPFQIEVHFLLS 242 (244)
Q Consensus 231 ~~~~l~~~l~~~ 242 (244)
+.+++.+.|+.+
T Consensus 151 ~~~eilr~l~al 162 (222)
T PRK13189 151 NMDEILRLVKAL 162 (222)
T ss_pred CHHHHHHHHHHh
Confidence 456777777654
No 37
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.89 E-value=1.2e-22 Score=182.45 Aligned_cols=139 Identities=19% Similarity=0.179 Sum_probs=111.8
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHH
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 161 (244)
...++.+|+|++.|.+|+.+.++ +||+|||+||++||++|+.++|.|++++++++.++++||+|+++... ...+.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHH
Confidence 55677899999999999999988 89999999999999999999999999999998878999999975321 223456
Q ss_pred HHHHHHHhhcCC-CcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 162 EIKEFACTRFKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 162 ~~~~~~~~~~~~-~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
++.+|+ +..+. ++|++ .|.++ .+.+.|+ |..+|++||||++|+|+.++.|..+.++|++.|+
T Consensus 108 ~~~~~~-~~~~y~~~pV~--~D~~~-~lak~fg-------------V~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWY-AGLDYPKLPVL--TDNGG-TLAQSLN-------------ISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHH-HhCCCccccee--ccccH-HHHHHcC-------------CCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 777787 44443 46777 34332 2333333 5566999999999999999999999999999887
Q ss_pred h
Q 026066 241 L 241 (244)
Q Consensus 241 ~ 241 (244)
.
T Consensus 171 ~ 171 (521)
T PRK14018 171 N 171 (521)
T ss_pred H
Confidence 4
No 38
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.88 E-value=2.8e-22 Score=147.38 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=90.6
Q ss_pred cCeEEEcCCCCeeecCCCC-CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 89 YDFTVKDIDGKDVPLSKFK-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~-Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
|+|++++.+|+.++|.+++ ||++||+||++||++|+.+++.++++++++++ ++.++.++ | ++.++..+++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999998865 58888876 3 3678899998
Q ss_pred HhhcCCC-cceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEec
Q 026066 168 CTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 168 ~~~~~~~-~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~ 226 (244)
+++++. +|++.+ ..+...|+ +...|++||||++|+|+++.
T Consensus 72 -~~~~~~~~p~~~~-----~~~~~~~~-------------~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 -KKHGLEAFPYVLS-----AELGMAYQ-------------VSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred -HHhCCCCCcEEec-----HHHHhhcC-------------CCCcCeEEEECCCCeEEecc
Confidence 788884 898732 12333343 34459999999999998764
No 39
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.88 E-value=3.2e-22 Score=161.35 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=107.8
Q ss_pred hccCCcccCeEEEc----CCCCeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCC
Q 026066 82 AATEKSLYDFTVKD----IDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 82 ~~~g~~~pdf~l~~----~~G~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~ 156 (244)
..+|+++|+|++.+ .+|+.++|++|+||++||+|| ++||+.|..++.+|++++++|+++|++||+||+|
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------ 79 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------ 79 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 46899999999765 466899999999999999999 6899999999999999999999999999999987
Q ss_pred CCCHHHHHHHHHhh------cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC
Q 026066 157 PGSNPEIKEFACTR------FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 157 ~~~~~~~~~~~~~~------~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~ 230 (244)
+...+.+|..+. .+++||++.|. . ..+.+.|+.+....+ + ..|++||||++|+|++.+.+..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~fpll~D~--~-~~ia~~ygv~~~~~g------~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 --SEYAHLQWTLQERKKGGLGTMAIPMLADK--T-KSIARSYGVLEEEQG------V-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred --CHHHHHHHHhChHhhCCccccccceEECc--H-hHHHHHcCCcccCCC------c-eEEEEEEECCCCEEEEEEecCC
Confidence 455555554211 14789999553 3 446777776543221 1 2399999999999998875533
Q ss_pred ----ChhhHHHHHhhc
Q 026066 231 ----SPFQIEVHFLLS 242 (244)
Q Consensus 231 ----~~~~l~~~l~~~ 242 (244)
+.+++.+.|+..
T Consensus 148 ~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 148 PVGRNVEEVLRLLEAF 163 (199)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 334455555443
No 40
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.88 E-value=3.6e-22 Score=151.93 Aligned_cols=129 Identities=25% Similarity=0.366 Sum_probs=104.5
Q ss_pred cccCeEEEcCCCCeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHH
Q 026066 87 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~ 165 (244)
.+|+|++.|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+|+|+.| +.+.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999976 5778999
Q ss_pred HHHhhc-CCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCC
Q 026066 166 FACTRF-KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS 231 (244)
Q Consensus 166 ~~~~~~-~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~ 231 (244)
|+ +++ +.+|+++. |..+ ...+.|+....... +. ....|++||||++|+|++++.|...
T Consensus 73 ~~-~~~~~~~~~~l~--D~~~-~~~~~~g~~~~~~~---~~-~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WA-EKEGGLNFPLLS--DPDG-EFAKAYGVLIEKSA---GG-GLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HH-hcccCCCceEEE--CCCh-HHHHHcCCcccccc---cc-CceeEEEEEECCCCcEEEEEecCCC
Confidence 98 666 89999995 4333 34455553322110 00 1123899999999999999988765
No 41
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.87 E-value=5.3e-22 Score=152.43 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=97.8
Q ss_pred cccCeEEEcCCCCeeecCCCC-CCEE-EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHH
Q 026066 87 SLYDFTVKDIDGKDVPLSKFK-GKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~~-Gk~v-ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~ 164 (244)
.+|+|+++|.+|+.++++++. +|++ |++||++||++|+.+++.|++++++++++|+++|+|+.| +.+.+.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999875 4655 445569999999999999999999999999999999977 456666
Q ss_pred HHHHhhcCCCcceeeecCCCCCCcchhhHhhhhcc-----------------CCCcCCccccceeEEEECCCCcEEEecC
Q 026066 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA-----------------GGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~-----------------~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
+|. ++++++||++.| .+ ....+.|+...... ++. .......|++||||++|+|++.+.
T Consensus 73 ~~~-~~~~~~~p~~~D--~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 73 AFD-KGKFLPFPVYAD--PD-RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGND-EGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred HHH-HhcCCCCeEEEC--Cc-hhHHHHcCceecCcHHHHHHHHhhCcccccccCC-CCcccccceEEEECCCCeEEEEec
Confidence 787 788999999955 33 22445555321110 011 111234599999999999999987
Q ss_pred C
Q 026066 228 P 228 (244)
Q Consensus 228 g 228 (244)
|
T Consensus 148 ~ 148 (149)
T cd02970 148 D 148 (149)
T ss_pred C
Confidence 6
No 42
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=152.47 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=117.9
Q ss_pred ccCCcccCeEEEcC-CCC---eeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCC
Q 026066 83 ATEKSLYDFTVKDI-DGK---DVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 157 (244)
Q Consensus 83 ~~g~~~pdf~l~~~-~G~---~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~ 157 (244)
.+|+++|+|++... .|+ +++++++.|||++|+|| +++.+.|..|+..++++|++|+++|++||+||+|
T Consensus 4 lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------- 76 (194)
T COG0450 4 LIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------- 76 (194)
T ss_pred ccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC-------
Confidence 58999999999998 775 89999999999999999 9999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHh---hcC---CCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC--
Q 026066 158 GSNPEIKEFACT---RFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-- 229 (244)
Q Consensus 158 ~~~~~~~~~~~~---~~~---~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~-- 229 (244)
+...+.+|... ..+ ++||++.| .++ ++.+.|+.+....|.. .+.+||||++|+|++...-.
T Consensus 77 -s~fsH~aW~~~~~~~~gi~~i~~PmiaD--~~~-~vs~~ygvl~~~~g~a-------~R~~FIIDp~g~ir~~~v~~~~ 145 (194)
T COG0450 77 -SVFSHKAWKATIREAGGIGKIKFPMIAD--PKG-EIARAYGVLHPEEGLA-------LRGTFIIDPDGVIRHILVNPLT 145 (194)
T ss_pred -cHHHHHHHHhcHHhcCCccceecceEEc--Cch-hHHHHcCCcccCCCcc-------eeEEEEECCCCeEEEEEEecCC
Confidence 78888888754 455 78999954 444 4889999887665532 28999999999999754322
Q ss_pred --CChhhHHHHHhhcc
Q 026066 230 --TSPFQIEVHFLLSR 243 (244)
Q Consensus 230 --~~~~~l~~~l~~~~ 243 (244)
.+.+++...|+.++
T Consensus 146 iGRn~dEilR~idAlq 161 (194)
T COG0450 146 IGRNVDEILRVIDALQ 161 (194)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 25567766666543
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.87 E-value=8.5e-22 Score=146.72 Aligned_cols=122 Identities=17% Similarity=0.319 Sum_probs=102.9
Q ss_pred cCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHH
Q 026066 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFAC 168 (244)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~ 168 (244)
|+|.+++++|+.+++.+++||+++|+||++||++|+.+++.|++++++ +.+++|+.|. ++.+++.+|+
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~- 68 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFM- 68 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHH-
Confidence 799999999999999999999999999999999999999999999876 6788888773 4688999998
Q ss_pred hhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 169 TRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 169 ~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
++++++|+++.| .+ ..+.+.|+ |...|+++|||++| |++++.|..++++|++.+
T Consensus 69 ~~~~~~~~~~~d--~~-~~~~~~~~-------------i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 69 QKKGYGFPVIND--PD-GVISARWG-------------VSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred HHcCCCccEEEC--CC-cHHHHhCC-------------CCcccEEEEEcCCC-eEEEEeccCCHHHHHhhc
Confidence 788999999853 33 22444443 45569999999999 999999999999987653
No 44
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=7.9e-22 Score=192.21 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=117.8
Q ss_pred hhhccCCcccCeEEEc--CCCCeeec-CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCC
Q 026066 80 ATAATEKSLYDFTVKD--IDGKDVPL-SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 156 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~--~~G~~v~l-~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~ 156 (244)
.....|+.+|+|...+ .+|+++++ ++++||+|||+||++||++|+.++|.|++++++|++++++||+|+++.+ +.
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D~ 466 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--DN 466 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--cc
Confidence 3455799999999887 68999998 5899999999999999999999999999999999999999999986532 22
Q ss_pred CCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHH
Q 026066 157 PGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIE 236 (244)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~ 236 (244)
+++.+++++++ ++++++||++.| ..+ .+...|+ +..+|++||||++|+|+.++.|....++++
T Consensus 467 ~~~~~~~~~~~-~~~~i~~pvv~D--~~~-~~~~~~~-------------V~~iPt~ilid~~G~iv~~~~G~~~~~~l~ 529 (1057)
T PLN02919 467 EKDLEAIRNAV-LRYNISHPVVND--GDM-YLWRELG-------------VSSWPTFAVVSPNGKLIAQLSGEGHRKDLD 529 (1057)
T ss_pred cccHHHHHHHH-HHhCCCccEEEC--Cch-HHHHhcC-------------CCccceEEEECCCCeEEEEEecccCHHHHH
Confidence 33567888998 789999999854 222 2333332 555699999999999999999998888888
Q ss_pred HHHhhc
Q 026066 237 VHFLLS 242 (244)
Q Consensus 237 ~~l~~~ 242 (244)
+.|++.
T Consensus 530 ~~l~~~ 535 (1057)
T PLN02919 530 DLVEAA 535 (1057)
T ss_pred HHHHHH
Confidence 887753
No 45
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.85 E-value=3.8e-21 Score=151.45 Aligned_cols=137 Identities=22% Similarity=0.249 Sum_probs=102.0
Q ss_pred hhccCCcccCeEEEcC-----CC-----CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEE------
Q 026066 81 TAATEKSLYDFTVKDI-----DG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEI------ 144 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~-----~G-----~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~v------ 144 (244)
...+|+.+|...+.|- +| +.++.++++||+.||.|||+||++|+.+.|.|.++ +++|+.+
T Consensus 22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t 97 (184)
T TIGR01626 22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTT 97 (184)
T ss_pred hhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccce
Confidence 4567888888877663 33 56788899999999999999999999999999998 4567888
Q ss_pred EEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc---eeeecCCCCCCcchhhHhhhhccCCCcCCccccceeE-EEECCCC
Q 026066 145 LAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP---IFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEK-FLVDKNG 220 (244)
Q Consensus 145 v~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p---~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~-~lID~~G 220 (244)
++|+.|+ ...+...-+++|+ ++.+..|| ++ .|.++. ....|+ +...|++ ||||++|
T Consensus 98 ~~IN~dd---~~~~~~~fVk~fi-e~~~~~~P~~~vl--lD~~g~-v~~~~g-------------v~~~P~T~fVIDk~G 157 (184)
T TIGR01626 98 TIINADD---AIVGTGMFVKSSA-KKGKKENPWSQVV--LDDKGA-VKNAWQ-------------LNSEDSAIIVLDKTG 157 (184)
T ss_pred EEEECcc---chhhHHHHHHHHH-HHhcccCCcceEE--ECCcch-HHHhcC-------------CCCCCceEEEECCCC
Confidence 9999873 1111223456666 66788888 77 444433 334444 4445888 8999999
Q ss_pred cEEEecCCCCChhhHHHHHhh
Q 026066 221 KVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 221 ~i~~~~~g~~~~~~l~~~l~~ 241 (244)
+|++++.|..+.+++++.+..
T Consensus 158 kVv~~~~G~l~~ee~e~~~~l 178 (184)
T TIGR01626 158 KVKFVKEGALSDSDIQTVISL 178 (184)
T ss_pred cEEEEEeCCCCHHHHHHHHHH
Confidence 999999999998888775544
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.85 E-value=1.4e-20 Score=137.11 Aligned_cols=116 Identities=31% Similarity=0.533 Sum_probs=98.8
Q ss_pred CeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHh
Q 026066 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACT 169 (244)
Q Consensus 90 df~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~ 169 (244)
+|.+.+++|+.+++.+++||++||+||++||+.|+..++.|.++.+++++.++.+++|++|. ++.+++++++ +
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~-~ 73 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFL-K 73 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHH-H
Confidence 57899999999999999999999999999999999999999999999987789999999983 1489999998 7
Q ss_pred hcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCC
Q 026066 170 RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 170 ~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g 228 (244)
+++.+|+++.|. .....+.|+ +..+|+++|+|++|+|++++.|
T Consensus 74 ~~~~~~~~~~~~---~~~~~~~~~-------------~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 74 KYGITFPVLLDP---DGELAKAYG-------------VRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred HcCCCcceEEcC---cchHHHhcC-------------cCccceEEEECCCCcEEEEecC
Confidence 788999998542 233444454 3345999999999999998875
No 47
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.84 E-value=1.1e-20 Score=146.54 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=104.8
Q ss_pred cCCcccCeEEEcCC---CCeeecCC-CCCCEEEEEEc-cCCCCCChHH-HHHHHHHHHHHhhCCc-EEEEEecCCCCCCC
Q 026066 84 TEKSLYDFTVKDID---GKDVPLSK-FKGKVLLIVNV-ASRCGLTPSN-YSELSHLYEKYKTQGF-EILAFPCNQFGGQE 156 (244)
Q Consensus 84 ~g~~~pdf~l~~~~---G~~v~l~~-~~Gk~vll~F~-a~~C~~C~~~-~~~L~~l~~~~~~~~~-~vv~vs~d~~~~~~ 156 (244)
+|+.+|+|++++.+ |+.++|++ ++||++||+|| +.|||.|..+ ++.|++.+++|.+.|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58899999999986 99999999 68987777665 9999999999 9999999999999998 69999987
Q ss_pred CCCHHHHHHHHHhhcCC--CcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC
Q 026066 157 PGSNPEIKEFACTRFKA--EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 157 ~~~~~~~~~~~~~~~~~--~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~ 230 (244)
+.+.+++|. +++++ +||+++| .+ ..+.+.|+.+..... .+......+.+|||| +|+|++.+....
T Consensus 75 --~~~~~~~~~-~~~~~~~~f~lLsD--~~-~~~~~~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~ 141 (155)
T cd03013 75 --DPFVMKAWG-KALGAKDKIRFLAD--GN-GEFTKALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED 141 (155)
T ss_pred --CHHHHHHHH-HhhCCCCcEEEEEC--CC-HHHHHHcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence 788999998 77787 8999965 33 457788886544320 011011238899999 799998875443
No 48
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.84 E-value=2.9e-20 Score=133.91 Aligned_cols=108 Identities=68% Similarity=1.222 Sum_probs=100.3
Q ss_pred ccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 88 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+.||+++|++|+.++|++|+||++||...|+.|+... +..+|++|+++|+++|++||++.+++++.+++++.+++++++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 3689999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcceeeecCCCCCCcchhhHhhh
Q 026066 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~l~ 196 (244)
..+++.+||+....+++|....++|++|+
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 77799999999999999999999999875
No 49
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.84 E-value=4.8e-21 Score=144.67 Aligned_cols=110 Identities=22% Similarity=0.296 Sum_probs=83.5
Q ss_pred CCC-CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 026066 96 IDG-KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 96 ~~G-~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
+|| +++++++++||++||+||++||++|+.+++.|++++++++++ +++|++|++|. +.+++.+|+ ++++
T Consensus 4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~-~~~~ 75 (132)
T cd02964 4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYF-SEMP 75 (132)
T ss_pred ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHH-hcCC
Confidence 345 489999999999999999999999999999999999999875 79999999884 567889998 6665
Q ss_pred CCcceeeecCC-CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC
Q 026066 173 AEFPIFDKVDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 173 ~~~p~l~d~d~-~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
.+..+...+. ....+.+.|+ +..+|+++|||++|+|+.+..
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~~-------------v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQFK-------------VEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHcC-------------CCCCCEEEEECCCCCEEchhH
Confidence 4444321110 0011122232 455699999999999997764
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.83 E-value=1.6e-20 Score=147.07 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=90.9
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI 163 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~ 163 (244)
.....|+|++. +|+.+++++|+ ||+||++|||+|++++|.|++++++| |++|++|++|.
T Consensus 51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~------------ 109 (181)
T PRK13728 51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG------------ 109 (181)
T ss_pred CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC------------
Confidence 44466888885 99999999998 67799999999999999999999997 59999999873
Q ss_pred HHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEE-EecCCCCChhhHHHHHhhc
Q 026066 164 KEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 164 ~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~-~~~~g~~~~~~l~~~l~~~ 242 (244)
.....||++.+ ..+......|+. .+..+|++||||++|+++ ..+.|..+.+++++.|++.
T Consensus 110 ------~~~~~fPv~~d--d~~~~~~~~~g~-----------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 110 ------QGDTAFPEALP--APPDVMQTFFPN-----------IPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred ------CCCCCCceEec--CchhHHHHHhCC-----------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 11257999842 122222222321 013459999999999997 4799999999998888763
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.82 E-value=1.3e-20 Score=142.00 Aligned_cols=112 Identities=21% Similarity=0.358 Sum_probs=83.1
Q ss_pred EEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 026066 93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (244)
Q Consensus 93 l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 170 (244)
+.|.+|+.+++++++||+|||+||++||++|+.+++.|++++++++++ +++|++|++|. +.++..+++ ++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~-~~ 74 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYF-SK 74 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHH-Hc
Confidence 568899999999999999999999999999999999999999999865 69999999884 456777777 44
Q ss_pred cCC-CcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC
Q 026066 171 FKA-EFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 171 ~~~-~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
++. .+++.. .+ ....+.+.|+ +..+|+++|||++|+|+.+..
T Consensus 75 ~~~~~~~~~~-~~-~~~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 75 MPWLAVPFSD-RE-RRSRLNRTFK-------------IEGIPTLIILDADGEVVTTDA 117 (131)
T ss_pred CCeeEcccCC-HH-HHHHHHHHcC-------------CCCCCEEEEECCCCCEEcccH
Confidence 321 111110 00 0011222232 455599999999999987653
No 52
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.78 E-value=8.5e-19 Score=138.37 Aligned_cols=140 Identities=21% Similarity=0.325 Sum_probs=105.0
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCC-CChHHHHHHHHHHHHHhhC--CcEEEEEecCCCCCCCCCCH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~-~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~ 160 (244)
.....|+|++.|.+|+.+++++++||++||+|..+.|| .|+..+..|+++++++.++ .+++|.|++|+ +.|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP----~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP----ERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST----TTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC----CCCCH
Confidence 45567999999999999999999999999999999998 8999999999999998864 59999999995 46889
Q ss_pred HHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhcc---CCCcCCccccceeEEEECCCCcEEEecCC
Q 026066 161 PEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSA---GGFLGDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~---~~~~~~~i~~~P~~~lID~~G~i~~~~~g 228 (244)
+.+++|+ +.++.++..+......-..+.+.|+...... .......+.|...+||||++|+|+..|.+
T Consensus 104 ~~L~~Y~-~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYA-KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHH-HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHH-HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999 7888888777532211122333343322111 11223357788999999999999998864
No 53
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.6e-18 Score=129.47 Aligned_cols=143 Identities=22% Similarity=0.333 Sum_probs=115.5
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCC-EEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk-~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
...+|+.+|||+|+|.||+.++|.++.|+ +||++|| +...|.|.++...+.+-|++++..+.+|++++.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 56799999999999999999999999886 8888887 7788999999999999999999999999999977
Q ss_pred CHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChh-hHHH
Q 026066 159 SNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPF-QIEV 237 (244)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~-~l~~ 237 (244)
+....++|. .+++++|.++ .|+.++ ....++.-+...||..+ +.+||+|++|.....+.-...|+ .+.+
T Consensus 134 ~s~sqKaF~-sKqnlPYhLL--SDpk~e-~ik~lGa~k~p~gg~~~------Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 134 DSASQKAFA-SKQNLPYHLL--SDPKNE-VIKDLGAPKDPFGGLPG------RSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred chHHHHHhh-hhccCCeeee--cCcchh-HHHHhCCCCCCCCCccc------ceEEEEecCCeEEEEEecccCccccHHH
Confidence 677888897 8899999999 555544 55666655555555443 78999999988777766666665 3444
Q ss_pred HHhh
Q 026066 238 HFLL 241 (244)
Q Consensus 238 ~l~~ 241 (244)
.++.
T Consensus 204 a~k~ 207 (211)
T KOG0855|consen 204 ALKF 207 (211)
T ss_pred HHHH
Confidence 4443
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.77 E-value=3.7e-19 Score=126.49 Aligned_cols=94 Identities=24% Similarity=0.330 Sum_probs=70.2
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHh-hCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
||+++|+||++||++|..+++.|.+++++|+ +.+++||+|++|. +.++.++++ ++++.++..+...+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~-~~~~~~~~~~~~~~~~-- 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFL-KKNNFPWYNVPFDDDN-- 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHH-HTCTTSSEEEETTTHH--
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHH-HhcCCCceEEeeCcch--
Confidence 7999999999999999999999999999999 5569999999983 678899998 6666666665321111
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcE
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV 222 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i 222 (244)
...+.+.+ + |..+|+++|+|++|+|
T Consensus 71 -~~~l~~~~----~------i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 -NSELLKKY----G------INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -HHHHHHHT----T-------TSSSEEEEEETTSBE
T ss_pred -HHHHHHHC----C------CCcCCEEEEECCCCCC
Confidence 11222211 1 5666999999999987
No 55
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=134.09 Aligned_cols=148 Identities=20% Similarity=0.324 Sum_probs=115.7
Q ss_pred CeEEEcCCCCeeecCCCCCCEEEEEEccCCCC-CChHHHHHHHHHHHHHh---hCCcEEEEEecCCCCCCCCCCHHHHHH
Q 026066 90 DFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYK---TQGFEILAFPCNQFGGQEPGSNPEIKE 165 (244)
Q Consensus 90 df~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~-~C~~~~~~L~~l~~~~~---~~~~~vv~vs~d~~~~~~~~~~~~~~~ 165 (244)
+|++.|.+|+.+++.+++||++||+|..++|| .|..++..|.++.++.. ..+++++.|++|+ +.|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP----erDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP----ERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC----CCCCHHHHHH
Confidence 89999999999999999999999999999999 89999999999999988 3459999999995 5788999999
Q ss_pred HHHh-hcCCCcceeeecCCCCCCcchhhHhhhhccC--CCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 166 FACT-RFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 166 ~~~~-~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~--~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|+ + .+...|-.+.......+.+.+.|+....... +.....+.|.-.+||||++|+++..+.+..+++++.++|+++
T Consensus 125 Y~-~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 125 YA-ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred Hh-cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 98 5 4444455554322222334455554431111 112345778889999999999999998888899999988864
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.74 E-value=8e-18 Score=129.59 Aligned_cols=108 Identities=14% Similarity=0.148 Sum_probs=75.1
Q ss_pred CCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 98 GKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 98 G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
|+.+.++++ .||+||++||++|+.++|.|++++++| ++.|++|++|. .. . + .||.
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~------~-~----~fp~ 98 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG------L-T----GFPD 98 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc------c-c----cccc
Confidence 666666554 499999999999999999999999987 48899999873 11 0 1 3554
Q ss_pred eeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHhhc
Q 026066 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i-~~~~~g~~~~~~l~~~l~~~ 242 (244)
.. +.........|+.. .+..+|++||||++|++ +.++.|..+.+++++.|+++
T Consensus 99 ~~--~~~~~~~~~~~~~~----------~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 99 PL--PATPEVMQTFFPNP----------RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred cc--CCchHHHHHHhccC----------CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 42 21111111112100 14456999999999886 55789999999999988764
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=8.7e-17 Score=122.78 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=80.3
Q ss_pred EEcCCCCeeecCC--CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 026066 93 VKDIDGKDVPLSK--FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (244)
Q Consensus 93 l~~~~G~~v~l~~--~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 170 (244)
+++++++...+++ .+||++||+||++||++|+.+.+.|.+++++|+++ +.|+.|.+|. . ...+.+ ++
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~-~~ 71 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEI-DR 71 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHH-HH
Confidence 4555555555554 37899999999999999999999999999999765 8899998772 1 111222 22
Q ss_pred cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 171 ~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
| + |..+|+++|+|++|+++.++.|..+.++|++.|++.
T Consensus 72 ~---------------------~-------------V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 72 Y---------------------R-------------VDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred c---------------------C-------------CCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 1 1 334499999999999999999998888888888764
No 58
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.8e-16 Score=116.84 Aligned_cols=142 Identities=19% Similarity=0.211 Sum_probs=111.9
Q ss_pred ccCCcccCeEEEc-CCC--CeeecCCCCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 83 ATEKSLYDFTVKD-IDG--KDVPLSKFKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 83 ~~g~~~pdf~l~~-~~G--~~v~l~~~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
.+.+++|+|+-.. ++| +.++|++|+||+|++.|| ..+...|+.++-.+.+.+++|++.|.+||++|+|
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D-------- 76 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD-------- 76 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------
Confidence 3555678988766 355 679999999999999999 7888899999999999999999999999999998
Q ss_pred CHHHHHHHHH---hhcC---CCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCC--
Q 026066 159 SNPEIKEFAC---TRFK---AEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTT-- 230 (244)
Q Consensus 159 ~~~~~~~~~~---~~~~---~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~-- 230 (244)
+...+.+|+. ++.| +++|+++| .+ .++.+.|+++....|..+ +..||||++|.+++......
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD--~~-~~IsrdyGvL~~~~G~~l-------RglfIId~~gi~R~it~NDlpv 146 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSD--LN-HEISRDYGVLKEDEGIAL-------RGLFIIDPDGILRQITINDLPV 146 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeec--cc-hhhHHhcCceecCCCcce-------eeeEEEccccceEEeeecccCC
Confidence 7888999975 2333 45999954 44 458899999988777544 78999999999988433222
Q ss_pred --ChhhHHHHHhhc
Q 026066 231 --SPFQIEVHFLLS 242 (244)
Q Consensus 231 --~~~~l~~~l~~~ 242 (244)
+.++....++.+
T Consensus 147 gRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 147 GRSVDETLRLVQAF 160 (196)
T ss_pred CccHHHHHHHHHHH
Confidence 455655555554
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.62 E-value=3e-15 Score=108.11 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=69.7
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.+.+||+|||+||++||++|+.+.|.|.++++++ .++.++.|++|. .....+++ ++++
T Consensus 11 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~--------~~~~~~l~-~~~~----------- 68 (103)
T cd02985 11 KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE--------NDSTMELC-RREK----------- 68 (103)
T ss_pred HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC--------ChHHHHHH-HHcC-----------
Confidence 3456899999999999999999999999999999 358999998772 22333444 3321
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+++.++.|. .+++|++.+.++
T Consensus 69 -----------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~~~ 102 (103)
T cd02985 69 -----------------------IIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVLYY 102 (103)
T ss_pred -----------------------CCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHHhc
Confidence 3334986555 999999999995 578888877654
No 60
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.59 E-value=6.1e-15 Score=118.98 Aligned_cols=148 Identities=20% Similarity=0.257 Sum_probs=107.7
Q ss_pred cCeEEEcCCCCeeecCCCCCCEEEEEEccCCCC-CChHHHHHHHHHHHHHhhCC---cEEEEEecCCCCCCCCCCHHHHH
Q 026066 89 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQG---FEILAFPCNQFGGQEPGSNPEIK 164 (244)
Q Consensus 89 pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~-~C~~~~~~L~~l~~~~~~~~---~~vv~vs~d~~~~~~~~~~~~~~ 164 (244)
-+|+|.|.+|+.++-.||+|||+||+|-.++|| .|+.|+..|.+..++..++. +.-|.|++|+ +.|+.+.+.
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP----eRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP----ERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc----ccCCHHHHH
Confidence 579999999999999999999999999999999 89999999999999887652 3468999995 678999999
Q ss_pred HHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccC-C-CcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 165 EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAG-G-FLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 165 ~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~-~-~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
+|+ ++|....--+...-..-..+.+.|+++..... . -....|-|.-..|||||+|+.+..|.-.-+.+++.+.|.+
T Consensus 196 eY~-~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 196 EYV-SEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILK 273 (280)
T ss_pred HHH-HhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHH
Confidence 999 67654332222111111234455554333211 1 0111244556689999999999888666788887776654
No 61
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.4e-14 Score=106.71 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=72.7
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++||||+|||.||++|+...|.|+++..+|.++ +.+.-|++|. .. +.
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~----el-------------------- 107 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HP----EL-------------------- 107 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------cc----ch--------------------
Confidence 3579999999999999999999999999999776 9999998762 11 11
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
+..|+ |.+.|+++++ ++|+.+.+..|..+.+.|++.|+|+.
T Consensus 108 --a~~Y~-------------I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 108 --AEDYE-------------ISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred --Hhhcc-------------eeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHh
Confidence 11222 4555998888 89999999999999999999999863
No 62
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.53 E-value=2.1e-14 Score=108.74 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=89.7
Q ss_pred eEEEcCCCCeeecC-CCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 91 FTVKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 91 f~l~~~~G~~v~l~-~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
..+...+|..+..+ .++||+|.++|-+.|||+|+...|.|.++|++.++.+ ++||.||.|. +.+++.+|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence 56888888888777 6899999999999999999999999999999998764 9999999984 788888888
Q ss_pred HhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEec
Q 026066 168 CTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 168 ~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~ 226 (244)
+.+...+..+-..|....+....|. +..+|...+++++|+++...
T Consensus 88 -~~~~~~W~~iPf~d~~~~~l~~ky~-------------v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 88 -LEHHGDWLAIPFGDDLIQKLSEKYE-------------VKGIPALVILKPDGTVVTED 132 (157)
T ss_pred -HhcCCCeEEecCCCHHHHHHHHhcc-------------cCcCceeEEecCCCCEehHh
Confidence 5556666665322222222333333 55669999999999988654
No 63
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3e-13 Score=103.15 Aligned_cols=150 Identities=15% Similarity=0.221 Sum_probs=111.6
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCC-EEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk-~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
.+..|+.+|+|+..+..|+ +++.||.|. |.+|+-. +++.|.|..|+..+.++..+|.++|+..|++|+|
T Consensus 5 ~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d-------- 75 (224)
T KOG0854|consen 5 RLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD-------- 75 (224)
T ss_pred cccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh--------
Confidence 3458999999999888886 799999886 6665433 8999999999999999999999999999999998
Q ss_pred CHHHHHHHHHh------h--cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEec--CC
Q 026066 159 SNPEIKEFACT------R--FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY--PP 228 (244)
Q Consensus 159 ~~~~~~~~~~~------~--~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~--~g 228 (244)
+.+.++.|++. . +..+||++. |.+ .+++-+++.+.....+..+.+.+ .+.+||||++.+|+-.+ ..
T Consensus 76 ~vesH~~Wi~DIks~~~~~~~~~~yPIIa--D~~-rela~~l~MlD~~e~~~~~~~~T-~Ravfvi~pdkKirLs~lYP~ 151 (224)
T KOG0854|consen 76 DVESHKDWIKDIKSYAKVKNHSVPYPIIA--DPN-RELAFLLNMLDPEEKKNIGDGKT-VRAVFVIDPDKKIRLSFLYPS 151 (224)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeec--CCc-hhhhhhhcccCHhHcCCCCCCce-EEEEEEECCCceEEEEEEccc
Confidence 56777777631 1 347899994 444 44677787776554444333322 38899999999998543 22
Q ss_pred C--CChhhHHHHHhhcc
Q 026066 229 T--TSPFQIEVHFLLSR 243 (244)
Q Consensus 229 ~--~~~~~l~~~l~~~~ 243 (244)
. .+.+++...|+.++
T Consensus 152 ttGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 152 TTGRNFDEILRVIDSLQ 168 (224)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 2 25677777776654
No 64
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.50 E-value=1.9e-13 Score=99.97 Aligned_cols=91 Identities=12% Similarity=0.004 Sum_probs=72.6
Q ss_pred CCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 105 KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 105 ~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+.+|+++||+||++||++|+...|.+.++.+++++.++.++.|++|. .. +.+ ++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~---~l~-~~~~------------ 76 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ER---RLA-RKLG------------ 76 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cH---HHH-HHcC------------
Confidence 34689999999999999999999999999999987678899898762 11 111 2211
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+++.++.|..+.++|.+.|+++
T Consensus 77 ----------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 77 ----------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ----------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 3334999999 5999999999988999999998864
No 65
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.49 E-value=1.4e-13 Score=99.31 Aligned_cols=91 Identities=16% Similarity=0.141 Sum_probs=70.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.||++||+||++||++|+...+.+ .++.+.+++ ++.++.|+++. +.....+++ ++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~-~~~~----------- 69 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALL-KRFG----------- 69 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHH-HHcC-----------
Confidence 578999999999999999998877 577888876 68999988762 222233443 3322
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECC-CCcEEEecCCCCChhhHHHHHh
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~-~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
|..+|+++++++ +|+++.++.|..+.+++++.|+
T Consensus 70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 233499999999 9999999999999999988774
No 66
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.48 E-value=7e-14 Score=117.60 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=77.9
Q ss_pred CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 99 KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 99 ~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
+...+++++||++||+||++||++|+.+.|.|++++++| |+.|++|++|. ... ..||.+
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~ 215 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA 215 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence 346788899999999999999999999999999999988 48999999883 110 115544
Q ss_pred eecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHhh
Q 026066 179 DKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 179 ~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~-G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
. + + ......|+ |..+|++||+|++ |++.....|..+.++|++.|..
T Consensus 216 ~--~-d-~~la~~~g-------------V~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 216 R--P-D-AGQAQQLK-------------IRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILL 262 (271)
T ss_pred c--C-C-HHHHHHcC-------------CCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHH
Confidence 1 1 1 11222332 5666999999995 5666667788899999887754
No 67
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.48 E-value=2.7e-13 Score=97.69 Aligned_cols=87 Identities=9% Similarity=0.086 Sum_probs=66.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|++++|+||++||++|+...+.|.++++++++..+.++.|++| ..+ .+ ++++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~~----~~-~~~~-------------- 68 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TID----TL-KRYR-------------- 68 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CHH----HH-HHcC--------------
Confidence 47899999999999999999999999999998666778888754 111 12 2221
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|...|+++++ ++|+++.+..|. +++.+++.|+++
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence 3333865555 799999999885 788899988763
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.46 E-value=2.2e-13 Score=97.82 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
.+++||++||.||++||++|+.+.|.+.++++++++ +.++.|..+. .. .... ++
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~-------~~---~~l~-~~------------- 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESS-------IK---PSLL-SR------------- 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCC-------CC---HHHH-Hh-------------
Confidence 457999999999999999999999999999999963 7788775330 00 0111 11
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
|+ |..+|+++++++ | .+.++.|..+.++|.+.|
T Consensus 68 --------~~-------------V~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 68 --------YG-------------VVGFPTILLFNS-T-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred --------cC-------------CeecCEEEEEcC-C-ceeEecCCCCHHHHHhhC
Confidence 21 344499999964 5 678899988888877653
No 69
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.44 E-value=6.5e-13 Score=94.33 Aligned_cols=86 Identities=19% Similarity=0.267 Sum_probs=68.1
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+|+++||+||++||++|+...+.++++++.+.+. +.++.|++|. .. +.. ++++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~---~l~-~~~~-------------- 63 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QP---QIA-QQFG-------------- 63 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CH---HHH-HHcC--------------
Confidence 5789999999999999999999999999999764 8888888762 11 122 2222
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
|...|++++++ +|+++.++.|..+.++|++.|+
T Consensus 64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHhC
Confidence 22339999996 9999999999988899988764
No 70
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.44 E-value=3.3e-13 Score=100.74 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=70.8
Q ss_pred CC-CEEEEEEccCCCCCChHHHHHHH---HHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecC
Q 026066 107 KG-KVLLIVNVASRCGLTPSNYSELS---HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 107 ~G-k~vll~F~a~~C~~C~~~~~~L~---~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+| |++||+||++||++|+.+.+.+. ++.+.+++ ++.++.|++|. +. .+.+| +.. .
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~---------~~~---~ 70 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDF---------DGE---A 70 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeecc---------CCC---C
Confidence 57 89999999999999999998875 56666654 58899998773 11 11111 000 0
Q ss_pred CCCCCcchhhHhhhhccCCCcCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHhhc
Q 026066 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~-G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
.....+...|+ |..+|+++++|++ |+++.++.|..+.+++.+.|+.+
T Consensus 71 ~~~~~l~~~~~-------------v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 71 LSEKELARKYR-------------VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred ccHHHHHHHcC-------------CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 01111122222 4556999999999 89999999999889888888764
No 71
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.3e-12 Score=97.45 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=100.3
Q ss_pred hhccCCcccCeEEEcCCCCeeecCCCCCCEE-EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVL-LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~v-ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
.+++|+++|+|++.+.+.+.+++.++.||.. |..|.+-..|.|-.+...+++...++.+ +.|+.||+| -
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------L 86 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------L 86 (158)
T ss_pred CCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------C
Confidence 3679999999999999999999999999854 4466788999999999999999988865 899999988 6
Q ss_pred HHHHHHHHHhhcCCC-cceeeecCCCCCCcchhhHhhhhccC--CCcCCccccceeEEEECCCCcEEEec
Q 026066 160 NPEIKEFACTRFKAE-FPIFDKVDVNGPNTAPVYQFLKSSAG--GFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~-~p~l~d~d~~~~~~~~~~~~l~~~~~--~~~~~~i~~~P~~~lID~~G~i~~~~ 226 (244)
+....+|+ ...|+. ...+ .|.......+.|+.+..+.. |.++ ++.|++|.+|+|++.-
T Consensus 87 PFAq~RfC-~aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLlA------RaV~V~De~g~V~y~e 147 (158)
T COG2077 87 PFAQKRFC-GAEGIENVITL--SDFRDRAFGENYGVLINEGPLAGLLA------RAVFVLDENGKVTYSE 147 (158)
T ss_pred hhHHhhhh-hhcCcccceEh--hhhhhhhhhHhhCEEeccccccCeee------eEEEEEcCCCcEEEEE
Confidence 89999998 666766 4444 44444445566765544331 3332 8899999999999864
No 72
>PHA02278 thioredoxin-like protein
Probab=99.40 E-value=1.6e-12 Score=93.59 Aligned_cols=88 Identities=15% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+++++||+||++||++|+...|.+.++.+++.. .+.++.|++|. +.. ...+.+ ++++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~------~~~-d~~~l~-~~~~-------------- 69 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDA------EDV-DREKAV-KLFD-------------- 69 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCc------ccc-ccHHHH-HHCC--------------
Confidence 578999999999999999999999999887543 36788888873 000 011121 2211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVH 238 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~ 238 (244)
|..+|+++++ ++|+++.+..|..+.+++.+.
T Consensus 70 --------------------I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 70 --------------------IMSTPVLIGY-KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred --------------------CccccEEEEE-ECCEEEEEEeCCCCHHHHHhh
Confidence 3344987777 789999999998888776653
No 73
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.39 E-value=1.5e-13 Score=100.41 Aligned_cols=106 Identities=20% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHH---HHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYE---KYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~---~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
+||++||+||.+||++|+...+++.+..+ .+++ ++.++.+.++. +......+. +..+........
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~--- 71 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVL-DFDGQKNVRLSN--- 71 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHH-SHTCHSSCHHHH---
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------ccccccccc-ccccchhhhHHH---
Confidence 57999999999999999988888875433 3333 58899998762 333344454 322221111100
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
..+...|+ |.++|+++++|++|+++.++.|..+++++.+.|
T Consensus 72 --~~l~~~~~-------------v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 --KELAQRYG-------------VNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --HHHHHHTT---------------SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --HHHHHHcC-------------CCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 11222222 677799999999999999999999999998865
No 74
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.36 E-value=3.8e-12 Score=91.24 Aligned_cols=87 Identities=16% Similarity=0.171 Sum_probs=65.4
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCC
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
.+|+ +||.||++||++|+...|.+.+++++++..++.+..|++|. .. ..+ ++++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~----~~~-~~~~------------- 68 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP----GLS-GRFF------------- 68 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH----hHH-HHcC-------------
Confidence 3566 57999999999999999999999998876668888887662 11 111 2211
Q ss_pred CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|..+|+++++ ++|++ .++.|..+.++|.+.|++
T Consensus 69 ---------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 69 ---------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred ---------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHhC
Confidence 3334998887 88986 788998898999888764
No 75
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.36 E-value=2.2e-12 Score=92.59 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=68.9
Q ss_pred CCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 026066 96 IDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 96 ~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
++++.++..-.++++++|.||++||++|+...|.+.++.+++++. +.+..|++|. . .+.+ ++++
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~--------~---~~~~-~~~~--- 69 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD--------D---RMLC-RSQG--- 69 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc--------c---HHHH-HHcC---
Confidence 344433332335689999999999999999999999999999865 8889998873 1 1222 2221
Q ss_pred ceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 026066 176 PIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEV 237 (244)
Q Consensus 176 p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~ 237 (244)
|..+|+++++ ++|+.+.++.|..+.++|.+
T Consensus 70 -------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 70 -------------------------------VNSYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred -------------------------------CCccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 2233998888 78999999999888877765
No 76
>PRK09381 trxA thioredoxin; Provisional
Probab=99.36 E-value=5e-12 Score=91.98 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+++++|+||++||++|+...|.++++.+++.++ +.++.|++|. .. . .. ++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~-~---~~-~~~~-------------- 72 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP-G---TA-PKYG-------------- 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Ch-h---HH-HhCC--------------
Confidence 3679999999999999999999999999999864 8999998763 11 1 11 1211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+...|+++++ ++|+++.++.|..+.++|++.|++.
T Consensus 73 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 73 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHh
Confidence 2233988888 7999999999998999999888763
No 77
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.35 E-value=2.9e-12 Score=93.28 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=61.1
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||+||++||++|+...|.|.++.+++.+. +.++-|++|. .. +.. ++++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~--------~~---~la-~~~~-------------- 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE--------VP---DFN-KMYE-------------- 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC--------CH---HHH-HHcC--------------
Confidence 4679999999999999999999999999999765 7889998873 11 222 2221
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQ 234 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~ 234 (244)
|...|+++++ ++|+++.+..|..+.++
T Consensus 66 --------------------V~~iPTf~~f-k~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 66 --------------------LYDPPTVMFF-FRNKHMKIDLGTGNNNK 92 (114)
T ss_pred --------------------CCCCCEEEEE-ECCEEEEEEcCCCCCce
Confidence 3334988877 89999999988765543
No 78
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=6.8e-12 Score=90.55 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=68.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+|.++|+|+++||++|+...|.+.+|..+|.+ +.++.|++| . ..+.+ ++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~-~~~~-------------- 71 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVA-KEFN-------------- 71 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHH-HhcC--------------
Confidence 368999999999999999999999999999987 899999987 1 33333 2211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|...|++.++ ++|+.+.+..|.. .+++++.|+++
T Consensus 72 --------------------V~~~PTf~f~-k~g~~~~~~vGa~-~~~l~~~i~~~ 105 (106)
T KOG0907|consen 72 --------------------VKAMPTFVFY-KGGEEVDEVVGAN-KAELEKKIAKH 105 (106)
T ss_pred --------------------ceEeeEEEEE-ECCEEEEEEecCC-HHHHHHHHHhc
Confidence 3334888888 9999999999874 55888888765
No 79
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4.4e-12 Score=105.23 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+-+||||+||++||++|+..+|.|.++..+|+++ +.+..|++|. .+.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p~------------------------- 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EPM------------------------- 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------chh-------------------------
Confidence 4569999999999999999999999999999987 9999999883 111
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+...|+ |+.+|++|++ ++|+-+..+.|..+.+++++.|+++
T Consensus 89 -vAaqfg-------------iqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 89 -VAAQFG-------------VQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred -HHHHhC-------------cCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHh
Confidence 111222 5556999999 9999999999999999999999875
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=99.33 E-value=4.3e-12 Score=96.55 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=69.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.||+++|+||++||++|+...+.|.++++++.+. +.++.|++|. .. +.. ++++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~-~~~~-------------- 103 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA--------ER---ELS-ARFR-------------- 103 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC--------CH---HHH-HhcC--------------
Confidence 4789999999999999999999999999988764 8888887652 11 122 2221
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+++.++.|..+.+++++.|++.
T Consensus 104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 2233988777 5999999999999999999999864
No 81
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.30 E-value=1.1e-11 Score=90.26 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=66.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+||+++|.||++||++|+...+.+.++.+++++.++.++.|.+|. +. ..++.+.++
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-------~~---~~~~~~~~~-------------- 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-------EQ---REFAKEELQ-------------- 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-------cc---hhhHHhhcC--------------
Confidence 578999999999999999999999999999997779999998762 01 111111111
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC-CChhhHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEVH 238 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~-~~~~~l~~~ 238 (244)
+..+|++++++++|+....|.|. .+.+.|...
T Consensus 76 --------------------v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f 108 (109)
T cd02993 76 --------------------LKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMF 108 (109)
T ss_pred --------------------CCcCCEEEEEcCCCCCceeccCCCCCHHHHHhh
Confidence 23349999999988888889885 577776654
No 82
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.29 E-value=2.2e-11 Score=87.76 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+++++|.||++||++|+...|.+.++.+++++. +.+..|++|. . .+.+ ++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~---~~~~-~~~~-------------- 70 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------Y---ESLC-QQAN-------------- 70 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------h---HHHH-HHcC--------------
Confidence 4579999999999999999999999999999654 8888888762 1 1222 2221
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCC-hhhHHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTS-PFQIEVHF 239 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~-~~~l~~~l 239 (244)
|..+|++++++++|+.+.+|.|..+ .++|.+.|
T Consensus 71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 2333999999777689999999876 77776643
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.28 E-value=9.8e-12 Score=89.05 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=62.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhh--CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKT--QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 110 ~vll~F~a~~C~~C~~~~~~L~~l~~~~~~--~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++|.||++||++|+...|.+.++++++++ .++.++.|.++. .. +.. ++++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~-~~~~--------------- 70 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HR---ELC-SEFQ--------------- 70 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Ch---hhH-hhcC---------------
Confidence 599999999999999999999999999986 358888887652 11 111 2211
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
|...|+++++ ++|+++.++.|..+.++|++.|
T Consensus 71 -------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 71 -------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred -------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhhC
Confidence 2333998989 7899999999998888776653
No 84
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.27 E-value=3e-11 Score=86.05 Aligned_cols=86 Identities=8% Similarity=0.183 Sum_probs=67.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+|+++|+||++||+.|+...+.+.++.+++.+ ++.++.|++|. .. +.. ++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~--------~~---~l~-~~~~-------------- 64 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE--------DQ---EIA-EAAG-------------- 64 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC--------CH---HHH-HHCC--------------
Confidence 568999999999999999999999999999875 48888887662 11 112 2211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
|..+|+++++ ++|+++.++.|..+.+++.+.|+
T Consensus 65 --------------------v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 65 --------------------IMGTPTVQFF-KDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred --------------------CeeccEEEEE-ECCeEEEEEeCCccHHHHHHhhC
Confidence 2233999999 58999999999988888888764
No 85
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.27 E-value=1.9e-11 Score=89.44 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=64.9
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||.||++||++|+...|.+.++.+++++. +.++.|++|. ...+ +.++++
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~--------~~~l---~~~~~~-------------- 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWW--------PQGK---CRKQKH-------------- 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC--------ChHH---HHHhcC--------------
Confidence 4579999999999999999999999999999765 8889998763 1111 111211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVH 238 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~ 238 (244)
|...|++.++ ++|+...+|.|..+.++|...
T Consensus 82 --------------------I~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 82 --------------------FFYFPVIHLY-YRSRGPIEYKGPMRAPYMEKF 112 (113)
T ss_pred --------------------CcccCEEEEE-ECCccceEEeCCCCHHHHHhh
Confidence 2233888888 789988899998888887754
No 86
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.27 E-value=1.8e-11 Score=88.80 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|++++|.||++||++|+...+.+.++.+++.+. +.++.|++|. + ...+.+ ++++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~------~---~~~~~~-~~~~-------------- 71 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE------D---KNKPLC-GKYG-------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc------c---ccHHHH-HHcC--------------
Confidence 4789999999999999999999999999999754 8889998762 1 112222 2211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCC----cEEEecCCCCChhhHHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG----KVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G----~i~~~~~g~~~~~~l~~~l 239 (244)
|...|++++++++| .+...|.|..+.++|.+.|
T Consensus 72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 33349999998886 4667888988888888776
No 87
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.26 E-value=8.4e-11 Score=87.35 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=69.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.|+.++|+|+++|||+|+...|.|.++.++ .++.|..|++|.....+..+.+++.++. ++++....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~-~~~~i~~~---------- 87 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFR-SRFGIPTS---------- 87 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHH-HHcCCccc----------
Confidence 467899999999999999999999999887 2377888988731111122233556665 44432211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC-CChhhHHHHHh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT-TSPFQIEVHFL 240 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~-~~~~~l~~~l~ 240 (244)
+.++|+++++ ++|+++.+..|. .+.++|++.+.
T Consensus 88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHhh
Confidence 2334988877 899999999884 46778877653
No 88
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.24 E-value=4.4e-11 Score=86.31 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=62.9
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
++++++|.||++||++|+.+.|.++++++++++.+ +.+..++++. . .+.. ++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~---~~~~-~~-------------- 67 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------Y---SSIA-SE-------------- 67 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------C---HhHH-hh--------------
Confidence 45799999999999999999999999999997654 5566665541 1 1111 11
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|+ |..+|++++++ +| +..++.|..+.++|.+.+++
T Consensus 68 -------~~-------------I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 68 -------FG-------------VRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred -------cC-------------CccccEEEEEc-CC-CceeecCCCCHHHHHHHHHh
Confidence 11 33449999994 45 45678888888999888875
No 89
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.24 E-value=6.6e-11 Score=89.47 Aligned_cols=88 Identities=10% Similarity=-0.036 Sum_probs=65.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+++|||+||++||++|+...|.|.++.+++++. +.|+-|++|+ . .++. +.|++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~---~dla-~~y~I------------- 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------V---PDFN-TMYEL------------- 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------C---HHHH-HHcCc-------------
Confidence 4689999999999999999999999999999775 8889999873 2 2232 33221
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCc-EEEecCC--------CCChhhHHHHHhh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPP--------TTSPFQIEVHFLL 241 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~-i~~~~~g--------~~~~~~l~~~l~~ 241 (244)
...|+++++-++|+ .+.+..| ..+.++|.+.++.
T Consensus 76 ---------------------~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 76 ---------------------YDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred ---------------------cCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 11166675668998 7788888 4566777777765
No 90
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.23 E-value=3e-11 Score=86.29 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC-cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
++++++|.||++||+.|+...+.++++.+.+++.+ +.++.+.+|. . .+.. ++++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------~---~~~~-~~~~------------- 66 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------E---KDLA-SRFG------------- 66 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--------h---HHHH-HhCC-------------
Confidence 68899999999999999999999999999997653 7777776552 1 1121 2221
Q ss_pred CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|...|+++++++++. +..+.|..+.++|++.|++.
T Consensus 67 ---------------------i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 67 ---------------------VSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ---------------------CCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 233399999998887 77898988999999988864
No 91
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.21 E-value=7.5e-11 Score=84.32 Aligned_cols=88 Identities=20% Similarity=0.289 Sum_probs=70.9
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.++++||.||++||+.|+...|.+.++.+++++ ++.++.|.++. . .+.+ ++++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~-~~~~-------------- 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELC-KKYG-------------- 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHH-HHTT--------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhh-hccC--------------
Confidence 368999999999999999999999999999988 69999998762 1 2222 3322
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+...++.|..+.+.|.+.|++.
T Consensus 69 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 69 --------------------VKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp --------------------CSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred --------------------CCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHcC
Confidence 2233888888 7888888999999999999999873
No 92
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.18 E-value=9.8e-11 Score=84.05 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=62.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC-CcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
++++++|.||++||++|+...+.++++.+++++. .+.++.|.++. + ....+. ++++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~---~~~~~~-~~~~------------- 72 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK------P---EHDALK-EEYN------------- 72 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC------C---ccHHHH-HhCC-------------
Confidence 4679999999999999999999999999999753 36666666541 0 011121 2211
Q ss_pred CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
|..+|+++++ ++|+++.++.|..+.+++.+.|
T Consensus 73 ---------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 73 ---------------------VKGFPTFKYF-ENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ---------------------CccccEEEEE-eCCCeeEEeCCCCCHHHHHhhC
Confidence 2333876555 7899999999988888877653
No 93
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.17 E-value=1.1e-10 Score=107.89 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d 180 (244)
.+.+||+|+|+||++||++|+.+.+.. .++.++++ ++.++.|++|+ +.++..+++ ++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~-~~~~-------- 531 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALL-KHYN-------- 531 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHH-HHcC--------
Confidence 445689999999999999999876654 56667774 47888888763 223334444 3322
Q ss_pred cCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEE--EecCCCCChhhHHHHHhhcc
Q 026066 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI--ERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 181 ~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~--~~~~g~~~~~~l~~~l~~~~ 243 (244)
+..+|+++++|+||+++ .++.|..+.+++.+.|++.+
T Consensus 532 --------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 --------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred --------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 22239999999999984 68889999999999998864
No 94
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.16 E-value=2.6e-10 Score=81.08 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=67.4
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|+||++||+.|+...+.|+++.+++.+. +.++.|.+|. .. ++. ++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~--------~~---~~~-~~~~--------------- 65 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE--------NP---DIA-AKYG--------------- 65 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC--------CH---HHH-HHcC---------------
Confidence 569999999999999999999999999888754 8999998762 11 122 2221
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
+...|+++++ ++|+++.++.|..+.+++.+.|++
T Consensus 66 -------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~ 99 (101)
T TIGR01068 66 -------------------IRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINK 99 (101)
T ss_pred -------------------CCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHh
Confidence 2233999999 789999999898888999988875
No 95
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.15 E-value=1.3e-10 Score=84.42 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=62.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC-----CcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeec
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~-----~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.+++++|.||++||++|+...|.+.++++++++. .+.+..|++|. . .+.+ ++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--------~---~~l~-~~~~--------- 75 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--------E---SDIA-DRYR--------- 75 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--------C---HHHH-HhCC---------
Confidence 3579999999999999999999999999887542 36777787762 1 1222 3322
Q ss_pred CCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCc-EEEecCCCCChhhHHHHH
Q 026066 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK-VIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 182 d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~-i~~~~~g~~~~~~l~~~l 239 (244)
|..+|+++++ ++|+ +...+.|..+.++|.+.|
T Consensus 76 -------------------------v~~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 -------------------------INKYPTLKLF-RNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred -------------------------CCcCCEEEEE-eCCcCcceecCCCCCHHHHHhhC
Confidence 3334988888 7888 457888888888777653
No 96
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.14 E-value=2.2e-10 Score=88.13 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=41.1
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~ 151 (244)
+++++||+||++||++|+...|.++++.+++++.++.++.|++|.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~ 90 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR 90 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC
Confidence 467999999999999999999999999999987679999999873
No 97
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.11 E-value=3.5e-10 Score=92.33 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|+||++||++|+...|.+.++.+++++. +.+..|.++. . .+.. ++++
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~--------~---~~l~-~~~~--------------- 103 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR--------A---LNLA-KRFA--------------- 103 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc--------c---HHHH-HHcC---------------
Confidence 578999999999999999999999999999764 7777776541 1 1222 2221
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|..+|++++++ +|+++..+.|..+.+++.+.+++
T Consensus 104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHH
Confidence 33349999997 79998888888888888877754
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.11 E-value=5.1e-10 Score=79.36 Aligned_cols=83 Identities=13% Similarity=0.214 Sum_probs=60.4
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|.||++||++|+...+.|.++.+++ ..++.++.|..+. ..+.. ++++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~-----------~~~~~-~~~~--------------- 65 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE-----------LPEIS-EKFE--------------- 65 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc-----------CHHHH-HhcC---------------
Confidence 689999999999999999999999999987 3347777775431 11222 2221
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
+...|+++++ ++|+++.++.|. .+++|.+.|
T Consensus 66 -------------------i~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 66 -------------------ITAVPTFVFF-RNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -------------------CccccEEEEE-ECCEEEEEEeCC-CHHHHHHhh
Confidence 2223988888 589999998885 567777655
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.10 E-value=2.4e-10 Score=81.98 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=65.0
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhh-CCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~-~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+|+++|.||++||++|+...+.+.++.++++. .++.++.|.++. . ..+.+ ++++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~-~~~~-------------- 72 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLA-KKYG-------------- 72 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhH-HhCC--------------
Confidence 57999999999999999999999999999973 347888887652 0 11222 2211
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
|..+|++++++++|+....+.|..+.++|.+.|
T Consensus 73 --------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 73 --------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred --------------------CCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 233499999998888888899988888877653
No 100
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.09 E-value=1.3e-10 Score=85.71 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=36.1
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
...+||+|||+||++||++|+.+.+.+.+..+.... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 445789999999999999999999999887665543 3456666665
No 101
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.07 E-value=5.3e-10 Score=90.57 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=104.7
Q ss_pred chhhhccCCcccCeEEEcCCCCe-eecCCC-C-CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCC
Q 026066 78 VHATAATEKSLYDFTVKDIDGKD-VPLSKF-K-GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG 154 (244)
Q Consensus 78 ~~~~~~~g~~~pdf~l~~~~G~~-v~l~~~-~-Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~ 154 (244)
.......|..|||..+.+++|+. .++.|| + ++|+||+|.+-.||+-+..+.+++++.++|.+. +.++.|.+.+.+.
T Consensus 69 l~~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHp 147 (237)
T PF00837_consen 69 LFKEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHP 147 (237)
T ss_pred cccceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCc
Confidence 44566799999999999999998 999998 4 479999999888999999999999999999985 5666665543222
Q ss_pred CC-------------CCCHH---HHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECC
Q 026066 155 QE-------------PGSNP---EIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK 218 (244)
Q Consensus 155 ~~-------------~~~~~---~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~ 218 (244)
.+ ..+.+ .+.+.+ .+....+|++ .|.-.......|+.+- -..||| +
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l-~~~~~~~pi~--vD~mdN~~~~~YgA~P--------------eRlyIi-~ 209 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLL-KEEFPQCPIV--VDTMDNNFNKAYGALP--------------ERLYII-Q 209 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHH-HhhCCCCCEE--EEccCCHHHHHhCCCc--------------ceEEEE-E
Confidence 11 11222 222333 2334678888 4444455666676432 246777 6
Q ss_pred CCcEEEecCCC---CChhhHHHHHhhcc
Q 026066 219 NGKVIERYPPT---TSPFQIEVHFLLSR 243 (244)
Q Consensus 219 ~G~i~~~~~g~---~~~~~l~~~l~~~~ 243 (244)
+|+|++..... ..++++++.|++++
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEKYK 237 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHhcC
Confidence 99999876432 26789999999875
No 102
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.07 E-value=1e-09 Score=81.01 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=65.3
Q ss_pred CEEEEEEccCCCCC--Ch--HHHHHHHHHHHHH-hhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 109 KVLLIVNVASRCGL--TP--SNYSELSHLYEKY-KTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 109 k~vll~F~a~~C~~--C~--~~~~~L~~l~~~~-~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
+++|++||+.||++ |+ ...|.|.++.+++ ++.++.|+.|++|. . .+.+ ++|+
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~---~~La-~~~~----------- 84 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------D---AKVA-KKLG----------- 84 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------C---HHHH-HHcC-----------
Confidence 48999999999988 99 6778888888887 23359999999873 1 1222 2322
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++|+ ++|+++. +.|..+.+.|.+.|+++
T Consensus 85 -----------------------I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 -----------------------LDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred -----------------------CccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 3334988888 7999887 99999999999998864
No 103
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.06 E-value=9.8e-10 Score=79.58 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=39.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.+|+|||.|+++||++|+..-|.|.++.++|++. +.++.|.+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 5799999999999999999999999999999765 888888876
No 104
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.05 E-value=2.7e-10 Score=80.61 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHh-hCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYK-TQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~-~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
++++++|.||++||+.|+...+.+.++.+.++ +.++.++.|+++. ..+.. ++++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~-~~~~------------- 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLC-SEYG------------- 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHH-HhCC-------------
Confidence 45699999999999999999999999999985 4458888887651 12222 2322
Q ss_pred CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHH
Q 026066 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVH 238 (244)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~ 238 (244)
|...|++++++++|+...++.|..+.+++.+.
T Consensus 69 ---------------------i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 69 ---------------------VRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred ---------------------CCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 22239999999888888899888888877664
No 105
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.05 E-value=1.2e-09 Score=79.06 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred CCCEEEEEEccCC--CCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASR--CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~--C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
.|.++||.||++| ||.|....|.|.++.++|.++ +.++.|++|+ .. +.+ .+|+
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~----~la-~~f~------------ 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ----ALA-ARFG------------ 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH----HHH-HHcC------------
Confidence 5678999999997 999999999999999999876 8888888763 11 222 2221
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHH
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEV 237 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~ 237 (244)
|..+|+++++ ++|+++.+..|..+.+++..
T Consensus 81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHHhh
Confidence 3344988777 89999999999888887753
No 106
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.04 E-value=1.5e-09 Score=77.69 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=63.3
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++++|.||++||++|+...+.+.++.+++.+. +.++.+.+|. .. +.. ++++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~~---~~~-~~~~--------------- 69 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------HQ---SLA-QQYG--------------- 69 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------hH---HHH-HHCC---------------
Confidence 467999999999999999999999999998764 8888887652 11 122 2221
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
|..+|++++++++.+....|.|..+.++|.+++
T Consensus 70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred -------------------CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 223399999976646677888888888887654
No 107
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.01 E-value=1.2e-09 Score=78.29 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhh-CCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~-~~~~vv~vs~d 150 (244)
.|++++|.||++||++|+...+.+.++.+++++ ..+.+..|+++
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 358999999999999999999999999999977 34777777754
No 108
>PTZ00051 thioredoxin; Provisional
Probab=99.00 E-value=1.7e-09 Score=76.83 Aligned_cols=42 Identities=10% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.+++++|+||++||++|+...+.+.++.+++. ++.++.|+++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc
Confidence 46899999999999999999999999999775 3777777654
No 109
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.98 E-value=5.7e-09 Score=77.55 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=32.2
Q ss_pred CCCCCEEEEEEccCCCCCChHHHHH-H--HHHHHHHhhCCcEEEEEecC
Q 026066 105 KFKGKVLLIVNVASRCGLTPSNYSE-L--SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 105 ~~~Gk~vll~F~a~~C~~C~~~~~~-L--~~l~~~~~~~~~~vv~vs~d 150 (244)
.-+||+|+|+|+++||+.|+..-+. + .++.+.+.+ ++.+|-|.+|
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~ 59 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE 59 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence 3468999999999999999977653 2 345555433 4777777655
No 110
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.97 E-value=4.4e-09 Score=77.02 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+++++|+||++||++|+...|.|.++.++|. ++.++-|.+|
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence 5899999999999999999999999999986 3788888754
No 111
>PTZ00102 disulphide isomerase; Provisional
Probab=98.96 E-value=2.1e-09 Score=97.64 Aligned_cols=104 Identities=15% Similarity=0.067 Sum_probs=74.7
Q ss_pred EEcCCCCeeecC-CCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC-cEEEEEecCCCCCCCCCCHHHHHHHHHhh
Q 026066 93 VKDIDGKDVPLS-KFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPGSNPEIKEFACTR 170 (244)
Q Consensus 93 l~~~~G~~v~l~-~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~-~~vv~vs~d~~~~~~~~~~~~~~~~~~~~ 170 (244)
++.+.|+.+.-. .-.||+|+|+||++||++|+...|.+.++.+++++.+ +.+..|++|. .+.
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------~~~-------- 422 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------NET-------- 422 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC--------Ccc--------
Confidence 555566655422 2257899999999999999999999999999987643 5666666542 000
Q ss_pred cCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 171 FKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 171 ~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
....|+ +..+|++++++++|++..++.|..+.+++.+.|++.
T Consensus 423 -----------------~~~~~~-------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 423 -----------------PLEEFS-------------WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred -----------------chhcCC-------------CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHc
Confidence 000111 333499999999888877899999999999988764
No 112
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.93 E-value=4.2e-09 Score=94.33 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCC
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNG 185 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~ 185 (244)
.+++++||+||++||++|+.+.|.+.++.++|++.++.++.|.+|. ... +.+.++++
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~-------~~~---~~~~~~~~------------- 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG-------DQK---EFAKQELQ------------- 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC-------Ccc---HHHHHHcC-------------
Confidence 3678999999999999999999999999999988778999998872 111 11111211
Q ss_pred CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC-CCCChhhHHHHHhhc
Q 026066 186 PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP-PTTSPFQIEVHFLLS 242 (244)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~-g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++.+++.-...|. |..+.+.|...|+.+
T Consensus 426 ---------------------I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 426 ---------------------LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ---------------------CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 233398888865543344575 467888898888754
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.90 E-value=1.3e-08 Score=70.56 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=62.0
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCc
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~ 188 (244)
++++|.||++||+.|....+.++++.++ ..++.++.|+++. . .+.. ++++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~-------~----~~~~-~~~~---------------- 60 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE-------N----PELA-EEYG---------------- 60 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC-------C----hhHH-HhcC----------------
Confidence 7899999999999999999999999888 4458999998762 1 1111 2211
Q ss_pred chhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
+...|+++++ ++|+++..+.|..+.++|.+.|+
T Consensus 61 ------------------v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 61 ------------------VRSIPTFLFF-KNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred ------------------cccccEEEEE-ECCEEEEEEecCCCHHHHHHHhC
Confidence 2223888888 57888899989888788887763
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.88 E-value=1.7e-08 Score=69.10 Aligned_cols=80 Identities=9% Similarity=0.110 Sum_probs=57.2
Q ss_pred EEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcch
Q 026066 111 LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAP 190 (244)
Q Consensus 111 vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~ 190 (244)
.|..||++||++|+...+.|.++.++++.. +.++.|+++. ..+. . ++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~~-------~~~~----~-~~~~------------------ 50 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVME-------NPQK----A-MEYG------------------ 50 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCcc-------CHHH----H-HHcC------------------
Confidence 466899999999999999999999998754 8888887652 1111 1 1111
Q ss_pred hhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 191 VYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 191 ~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+..+|++++ +|++ ++.|..+.+++.+.|++.
T Consensus 51 ----------------v~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 51 ----------------IMAVPAIVI---NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred ----------------CccCCEEEE---CCEE--EEecCCCHHHHHHHHHhh
Confidence 223388765 6764 667877899999988763
No 115
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.88 E-value=1.3e-08 Score=74.51 Aligned_cols=42 Identities=7% Similarity=-0.099 Sum_probs=37.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
++++|+|+||++||++|+...+.|.++.+++.+ +.++-|++|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence 357999999999999999999999999998864 788888876
No 116
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.86 E-value=3.2e-08 Score=72.54 Aligned_cols=94 Identities=17% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeee
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d 180 (244)
+.-++|+++|+|+++||+.|....... .++.+.+.+ ++.++.+.++ + .+..+++ +.++
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~-~~~~-------- 73 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFL-QSYK-------- 73 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHH-HHhC--------
Confidence 344689999999999999999766542 334444544 3666666543 1 1233343 2221
Q ss_pred cCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECC-CCcEEEecCCCCChhhHHHHHhhc
Q 026066 181 VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDK-NGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 181 ~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~-~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+...|+.++||+ +|+++.+..|..+++++.+.|++.
T Consensus 74 --------------------------~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 74 --------------------------VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred --------------------------ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 112299999999 899999999999999999888763
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.85 E-value=2e-08 Score=73.52 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=59.5
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
++.++|+||++||++|+...+.|.++.+++ + .+.++.|.+|. .. +.. ++|+
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~-------~~----~l~-~~~~--------------- 72 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDE-------DK----EKA-EKYG--------------- 72 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCc-------CH----HHH-HHcC---------------
Confidence 456888899999999999999999998886 3 38888888762 11 121 2221
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEE-EecCCCCChhhHHHHHhhc
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~-~~~~g~~~~~~l~~~l~~~ 242 (244)
|...|++++++.+|+.- .++.|..+.+++.+.|+.+
T Consensus 73 -------------------v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 73 -------------------VERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred -------------------CCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHH
Confidence 33349988886532221 1566777778888887754
No 118
>PLN02309 5'-adenylylsulfate reductase
Probab=98.84 E-value=1.6e-08 Score=90.55 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+||++||+||++||++|+.+.+.+.++.++|.+.++.|+.|++|. .. .+.+.++++
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-------~~---~~la~~~~~-------------- 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-------DQ---KEFAKQELQ-------------- 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------cc---hHHHHhhCC--------------
Confidence 678999999999999999999999999999988789999998762 11 122211111
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCC-CCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-TTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g-~~~~~~l~~~l~~~ 242 (244)
|..+|+++++.++.+-...|.| ..+.+.|...|+.+
T Consensus 420 --------------------I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 --------------------LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred --------------------CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 3334999988655544455664 56888999988865
No 119
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.83 E-value=9.1e-09 Score=75.76 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=40.1
Q ss_pred CCCCEEEEEEcc-------CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCC
Q 026066 106 FKGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 106 ~~Gk~vll~F~a-------~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~ 151 (244)
.+|++|+|+||| +||++|+...|.|.++.+++++ ++.++.|.+|+
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~ 70 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGD 70 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCC
Confidence 368899999999 9999999999999999999974 38999998873
No 120
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.82 E-value=3.1e-08 Score=78.19 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=36.4
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+++|||+||++||++|+...+.|.++.++|. ++.++-|.+|
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 3599999999999999999999999999986 3888888765
No 121
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-08 Score=82.30 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=67.3
Q ss_pred ecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeec
Q 026066 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.|+.-.||.|+|+|+++||++|+...|.+.++..+|+ +.+++-|.+|+ .+..+ ..
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~-----------c~~ta-a~----------- 69 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE-----------CRGTA-AT----------- 69 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH-----------hhchh-hh-----------
Confidence 3444457999999999999999999999999999995 47899998762 11111 11
Q ss_pred CCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 182 d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+ +|...|+.+++ ++|+-+..+.|. ++..|++.++++
T Consensus 70 ----------~-------------gV~amPTFiff-~ng~kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 70 ----------N-------------GVNAMPTFIFF-RNGVKIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred ----------c-------------CcccCceEEEE-ecCeEeeeecCC-CHHHHHHHHHHH
Confidence 1 14444876555 899999998876 677788877764
No 122
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.78 E-value=3.3e-08 Score=79.13 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=61.2
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
+++|||+||++||++|+...+.|.++..+|.+ +.++-|.++. .+ .+| +
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~--------------~~-~~~----~----------- 149 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQ--------------CI-PNY----P----------- 149 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHH--------------hH-hhC----C-----------
Confidence 46999999999999999999999999999963 8888887541 01 221 1
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCC-------CCChhhHHHHHhh
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPP-------TTSPFQIEVHFLL 241 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g-------~~~~~~l~~~l~~ 241 (244)
+...|+++++ ++|+++.++.| ..+.++|+..|.+
T Consensus 150 -------------------i~~lPTlliy-k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 150 -------------------DKNLPTILVY-RNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred -------------------CCCCCEEEEE-ECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 2223877777 89999988876 3456677777764
No 123
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.78 E-value=3.9e-08 Score=72.14 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=36.0
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC--CcEEEEEecC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCN 150 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d 150 (244)
+++++|.||++||++|+...+.+.++.+++++. .+.+..|+++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 379999999999999999999999999998753 2666667654
No 124
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.71 E-value=9.6e-08 Score=68.33 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=63.9
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPN 187 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~ 187 (244)
|+++++.|++.||++|....+.+.++.++|+++ +.++.|+.| +..+++ +.+++.. .
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~-----------~~~~~~-~~~~i~~----------~- 67 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD-----------DFGRHL-EYFGLKE----------E- 67 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH-----------hhHHHH-HHcCCCh----------h-
Confidence 789999999999999999999999999999865 888888754 122333 3433211 0
Q ss_pred cchhhHhhhhccCCCcCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHhhc
Q 026066 188 TAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 188 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~-G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
..|++++++.+ |+......+..+.++|.+.|+++
T Consensus 68 ---------------------~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 68 ---------------------DLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ---------------------hCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 11888888763 54443344445888999988764
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.68 E-value=8.6e-08 Score=86.55 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
++++++|.||++||++|+...+.+.++.+.+.+.+ +.++.|.++. . .+.+ ++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~------------ 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--------E---KDLA-QKYG------------ 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------c---HHHH-HhCC------------
Confidence 56789999999999999999999999999988765 7788887662 1 1222 2222
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHhhc
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i-~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+. +..+.|..+.+.+.+.|++.
T Consensus 73 ----------------------i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 73 ----------------------VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred ----------------------CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHh
Confidence 2233877777 67776 78888888888888877653
No 126
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.66 E-value=9.3e-08 Score=77.87 Aligned_cols=100 Identities=23% Similarity=0.228 Sum_probs=71.9
Q ss_pred ecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeec
Q 026066 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.+.++.+++-|++|+...|+.|..+.|.|..+.++| |+.|+.||+|.. .--.||...
T Consensus 114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~------------------~~~~fp~~~-- 170 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR------------------PIPSFPNPR-- 170 (215)
T ss_pred HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC------------------CCcCCCCCC--
Confidence 345566789999999999999999999999999998 699999999831 001233221
Q ss_pred CCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCC-cEEEecCCCCChhhHHHHH
Q 026066 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 182 d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G-~i~~~~~g~~~~~~l~~~l 239 (244)
.+ ....+.++ |..+|++|||++++ ++.-...|..+.++|.+.|
T Consensus 171 -~~-~g~~~~l~-------------v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 -PD-PGQAKRLG-------------VKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred -CC-HHHHHHcC-------------CCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 00 11122222 45569999999988 6666778999999988765
No 127
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.65 E-value=1.3e-07 Score=64.21 Aligned_cols=36 Identities=11% Similarity=0.064 Sum_probs=30.2
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.|.||++||++|....+.+.++.+++... ++++-|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~ 37 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT 37 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence 37899999999999999999999998654 6776553
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=98.63 E-value=1.9e-07 Score=75.22 Aligned_cols=76 Identities=9% Similarity=-0.064 Sum_probs=59.6
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCc
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNT 188 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~ 188 (244)
..+|++||++||++|+...+.|.++.++|.+ +.++.|..| .+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d------------------------------~~------ 59 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA------------------------------DA------ 59 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc------------------------------cC------
Confidence 4678999999999999999999999999964 777777411 11
Q ss_pred chhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 189 APVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 189 ~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|+++++ ++|+++.+..|. ++.++...|+++
T Consensus 60 ------------------V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~ 93 (204)
T PTZ00062 60 ------------------NNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGW 93 (204)
T ss_pred ------------------cccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHH
Confidence 3334888888 799999999886 577787777664
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=98.62 E-value=9.5e-08 Score=86.87 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+++.++|.||++||++|+...|.+.++.+++++.+ +.+..|.++. . .+.+ ++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~--------~---~~l~-~~~~------------ 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE--------E---MELA-QEFG------------ 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC--------C---HHHH-HhcC------------
Confidence 56899999999999999999999999998887654 6666666542 1 1122 2221
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|++++++.++ .+ .|.|..+.+++.+.|++.
T Consensus 104 ----------------------i~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 104 ----------------------VRGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred ----------------------CCcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHh
Confidence 23339999996554 44 788888899998888764
No 130
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.53 E-value=3.3e-07 Score=76.11 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=72.0
Q ss_pred cCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecC
Q 026066 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 103 l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+.++.+++-|++|+...|+.|..+.|.|+.+.++| |+.|+.||+|. ...-.||... .|
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~~-~d 202 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNSR-SD 202 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCcc-CC
Confidence 44556789999999999999999999999999988 59999999983 1111133321 11
Q ss_pred CCCCCcchhhHhhhhccCCCcCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHhh
Q 026066 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~-G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
.| ....++ +..+|++||++++ +++.-...|..+.++|.+.|..
T Consensus 203 -~g--qa~~l~-------------v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 203 -SG--QAQHLG-------------VKYFPALYLVNPKSQKMSPLAYGFISQDELKERILN 246 (256)
T ss_pred -hH--HHHhcC-------------CccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHH
Confidence 11 111111 4456999999999 6666677899999999887753
No 131
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.53 E-value=4e-07 Score=67.84 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHH
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSEL 130 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L 130 (244)
-+||+|+|+|+++||++|+..-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3689999999999999999877654
No 132
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.53 E-value=4.3e-07 Score=81.97 Aligned_cols=88 Identities=18% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
.++.+||.||++||++|+...|.+.++.+++++. ++.++.|+++. .. +.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-----------------n~------~~------ 413 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-----------------ND------VP------ 413 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-----------------Cc------cC------
Confidence 4789999999999999999999999999999872 58888887652 00 00
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcE-EEecCCCCChhhHHHHHhhc
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i-~~~~~g~~~~~~l~~~l~~~ 242 (244)
. ++ |..+|+++++++++++ ...+.|..+.+.+.+.|++.
T Consensus 414 -----~-~~-------------i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 414 -----P-FE-------------VEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred -----C-CC-------------ccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 0 11 3334999999776652 45678888899999988764
No 133
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.46 E-value=6.1e-07 Score=74.14 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=72.4
Q ss_pred cCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecC
Q 026066 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 103 l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
+.++.+++-|++||...|+.|..+.|.|+.+.++| |+.|+.||+|.- ..-.||... .|
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~------------------~~p~fp~~~-~d 195 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV------------------INPLLPDSR-TD 195 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC------------------CCCCCCCCc-cC
Confidence 45556779999999999999999999999999987 599999999831 111133321 11
Q ss_pred CCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCC-cEEEecCCCCChhhHHHHHhh
Q 026066 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-KVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G-~i~~~~~g~~~~~~l~~~l~~ 241 (244)
.| ....++ |..+|++||++++. ++.-...|..+.++|.+.|..
T Consensus 196 -~g--qa~~l~-------------v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~ 239 (248)
T PRK13703 196 -QG--QAQRLG-------------VKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLN 239 (248)
T ss_pred -hh--HHHhcC-------------CcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHH
Confidence 11 111111 45569999999985 666677899999999887753
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.45 E-value=8.3e-07 Score=72.42 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCCEEEEEEcc---CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecC
Q 026066 106 FKGKVLLIVNVA---SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 106 ~~Gk~vll~F~a---~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
.++...++.|++ +||++|+...|.+.++.+++. ++++..+.+|. + +..+.+ ++|+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~------~---~~~~l~-~~~~---------- 74 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT------P---EDKEEA-EKYG---------- 74 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC------c---ccHHHH-HHcC----------
Confidence 454555666777 999999999999999999984 35665666551 1 111222 2221
Q ss_pred CCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEE-EecCCCCChhhHHHHHhhc
Q 026066 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVI-ERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~-~~~~g~~~~~~l~~~l~~~ 242 (244)
|.+.|++++++ +|+.+ .++.|..+.+++.+.|+++
T Consensus 75 ------------------------V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 75 ------------------------VERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred ------------------------CCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHH
Confidence 33349888874 67776 4888888888887777653
No 135
>smart00594 UAS UAS domain.
Probab=98.42 E-value=2.2e-06 Score=63.61 Aligned_cols=90 Identities=8% Similarity=0.031 Sum_probs=61.5
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecC
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVD 182 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d 182 (244)
-+||.++|+|++.||+.|......+ .++.+.+. +++.++.++++ +.+ ..++. +.++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~--------~~e-g~~l~-~~~~---------- 83 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVD--------TSE-GQRVS-QFYK---------- 83 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCC--------Chh-HHHHH-HhcC----------
Confidence 3689999999999999999876653 33444443 34666666654 122 23333 3321
Q ss_pred CCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCC-----cEEEecCCCCChhhHHHHHh
Q 026066 183 VNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG-----KVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 183 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G-----~i~~~~~g~~~~~~l~~~l~ 240 (244)
+...|++.|+|++| +++.+..|..+++++...|+
T Consensus 84 ------------------------~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 84 ------------------------LDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred ------------------------cCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhhC
Confidence 12229999999998 57888999999999988763
No 136
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.37 E-value=7.6e-07 Score=80.67 Aligned_cols=97 Identities=14% Similarity=0.062 Sum_probs=73.4
Q ss_pred CCCCCEEEEEEccCCCCCChHHHHH-HHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 105 KFKGKVLLIVNVASRCGLTPSNYSE-LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 105 ~~~Gk~vll~F~a~~C~~C~~~~~~-L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
+-++|+|+|+|+|+||-.|+..-+. +.+-+...+-.|++.+-+++.. ++.++.+.+ ++++.
T Consensus 471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~-------~~p~~~~lL-k~~~~---------- 532 (569)
T COG4232 471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTA-------NDPAITALL-KRLGV---------- 532 (569)
T ss_pred hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecC-------CCHHHHHHH-HHcCC----------
Confidence 3456799999999999999976554 3466666666778888887763 556677776 55331
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
...|++++++++|+-.....|..+.+.+++.|++.+
T Consensus 533 ------------------------~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 533 ------------------------FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred ------------------------CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 111999999999998888889899999999998754
No 137
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.34 E-value=7.1e-07 Score=66.81 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=49.1
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
..+..+.-++.|..+|||.|...+|.|.++.+..++ +.+=.|..| +..+.+ +++ + .
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~-~~~------l---t- 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELM-DQY------L---T- 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHT-TTT------T---T-
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHH-HHH------H---h-
Confidence 445566888999999999999999999999998653 555445433 222222 111 0 0
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
+| ...+|+++++|++|+++.++.+. |+.+++.++++|
T Consensus 93 ~g---------------------~~~IP~~I~~d~~~~~lg~wger--P~~~~~~~~~~k 129 (129)
T PF14595_consen 93 NG---------------------GRSIPTFIFLDKDGKELGRWGER--PKEVQELVDEYK 129 (129)
T ss_dssp -S---------------------S--SSEEEEE-TT--EEEEEESS---HHHH-------
T ss_pred CC---------------------CeecCEEEEEcCCCCEeEEEcCC--CHHHhhccccCC
Confidence 10 22349999999999999999753 677777776654
No 138
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-06 Score=78.66 Aligned_cols=87 Identities=16% Similarity=0.237 Sum_probs=65.6
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
..+||.|||+||++|+...|++.+....+++.+ +.+.-|.+. ++ .+.+ .+|+
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat----------~~-~~~~-~~y~-------------- 96 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT----------EE-SDLA-SKYE-------------- 96 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc----------hh-hhhH-hhhc--------------
Confidence 588999999999999999999999999999874 666666432 11 3333 3322
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|..+|++-|+ +||+....|.|....+.|..+|++.
T Consensus 97 --------------------v~gyPTlkiF-rnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 97 --------------------VRGYPTLKIF-RNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred --------------------CCCCCeEEEE-ecCCcceeccCcccHHHHHHHHHhc
Confidence 2223776666 8999888899988899999888763
No 139
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.6e-06 Score=62.17 Aligned_cols=131 Identities=23% Similarity=0.229 Sum_probs=87.5
Q ss_pred hccCCcccCeEEEcCCC-------CeeecCC-CCCCEEEE-EEccCCCCCChH-HHHHHHHHHHHHhhCCc-EEEEEecC
Q 026066 82 AATEKSLYDFTVKDIDG-------KDVPLSK-FKGKVLLI-VNVASRCGLTPS-NYSELSHLYEKYKTQGF-EILAFPCN 150 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G-------~~v~l~~-~~Gk~vll-~F~a~~C~~C~~-~~~~L~~l~~~~~~~~~-~vv~vs~d 150 (244)
..+|+++|+.+++...+ ..++.++ ++||.|+| -..+.+.|.|.. ++|...+++++++++|+ +|+.|++|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 45899999988877522 3355555 48876555 345889999986 89999999999999996 57778887
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCC--cceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC
Q 026066 151 QFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
+...+.+|. +..+.. ..++ .|.+++ ..+..+.+-....+ |-++..-+...|| +||+|...+.
T Consensus 83 --------D~FVm~AWa-k~~g~~~~I~fi--~Dg~ge-FTk~~Gm~~d~~~~--g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 83 --------DAFVMNAWA-KSQGGEGNIKFI--PDGNGE-FTKAMGMLVDKSDL--GFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred --------cHHHHHHHH-HhcCCCccEEEe--cCCCch-hhhhcCceeecccC--CcceeeeeEEEEE-eCCeEEEEEe
Confidence 688999998 554544 4555 555555 33333333222221 1124444667777 7898886654
No 140
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.25 E-value=7.2e-06 Score=57.32 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=37.3
Q ss_pred cCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 103 LSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 103 l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+.++++.+-+..|++.||++|+...+.++++.+++. ++.+..+.+|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 346777888889999999999999999999988765 3777777654
No 141
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.24 E-value=6.9e-06 Score=67.01 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=31.3
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.++.++|+.||++||++|+...+.++++..++. ++.+..|..|
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 344566667999999999988888888777642 3666666544
No 142
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.15 E-value=2.2e-05 Score=63.57 Aligned_cols=120 Identities=23% Similarity=0.373 Sum_probs=78.9
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCc-EEEEEecCCCCCCCCCCHHH
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGF-EILAFPCNQFGGQEPGSNPE 162 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~-~vv~vs~d~~~~~~~~~~~~ 162 (244)
.-+..|.+++.+.+ .+.+.+|+++||.+...+|..|..++..|..|..++.+.|+ .|-.+-++. .+....
T Consensus 6 ~C~~~p~W~i~~~~----pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~-----~~~~s~ 76 (238)
T PF04592_consen 6 ICKPPPPWKIGGQD----PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH-----QGEHSR 76 (238)
T ss_pred cCCCCCCceECCch----HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC-----CCcchh
Confidence 45567888875533 56788999999999988999999999999999999998875 444444442 122222
Q ss_pred HH-HHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecC
Q 026066 163 IK-EFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYP 227 (244)
Q Consensus 163 ~~-~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~ 227 (244)
.. ..++++....+|++.. |.... ++|..|.... --+||+|+-|++.+...
T Consensus 77 ~~~~~l~~r~~~~ipVyqq-~~~q~---dvW~~L~G~k-----------dD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 77 LKYWELKRRVSEHIPVYQQ-DENQP---DVWELLNGSK-----------DDFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHHHHhCCCCCceecC-Ccccc---CHHHHhCCCc-----------CcEEEEeccCcEEEEec
Confidence 22 2332444445888842 22222 3444333211 23699999999998764
No 143
>PHA02125 thioredoxin-like protein
Probab=98.11 E-value=1.7e-05 Score=53.46 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.0
Q ss_pred EEEEccCCCCCChHHHHHHHHH
Q 026066 112 LIVNVASRCGLTPSNYSELSHL 133 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l 133 (244)
++.||++||++|+...+.|.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 6889999999999988888654
No 144
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.11 E-value=5.1e-06 Score=59.39 Aligned_cols=48 Identities=29% Similarity=0.386 Sum_probs=41.0
Q ss_pred ecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 102 ~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.+...+++++++.||+.||+.|+...+.+.++.+++.. .+.++.+.+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 44444588999999999999999999999999999987 5888888764
No 145
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.10 E-value=1.2e-05 Score=55.21 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d 150 (244)
+||+++|+|+++||+.|+..-..+ .++.+.+.+ ++..+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 589999999999999999887766 334444554 4888888765
No 146
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.04 E-value=0.00018 Score=54.89 Aligned_cols=143 Identities=20% Similarity=0.271 Sum_probs=83.6
Q ss_pred ccCCcccCeEEEc-----CCC-----CeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHH-HhhCCcEEEEE-ecC
Q 026066 83 ATEKSLYDFTVKD-----IDG-----KDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEK-YKTQGFEILAF-PCN 150 (244)
Q Consensus 83 ~~g~~~pdf~l~~-----~~G-----~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~-~~~~~~~vv~v-s~d 150 (244)
..|+++|...+.| ++| +.++..++.||+-+|...|-.-..=...-|-+..+.+. |....++..+| +.|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 4677788887766 233 45566778999988877765433333333444444443 55444665554 333
Q ss_pred CCCCCCCCCHHHHHHHHHhhcCCCcceee-ecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCC
Q 026066 151 QFGGQEPGSNPEIKEFACTRFKAEFPIFD-KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~ 229 (244)
+ -...+.--++..+ ++-...||+-. -.|.+|. ....++. ... .-.++|+|++|+|++...|.
T Consensus 82 D---Ai~gt~~fVrss~-e~~kk~~p~s~~vlD~~G~-~~~aW~L-~~~-----------~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSA-EDSKKEFPWSQFVLDSNGV-VRKAWQL-QEE-----------SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred c---ccccchHHHHHHH-HHhhhhCCCcEEEEcCCCc-eeccccC-CCC-----------CceEEEEcCCccEEEEECCC
Confidence 1 1122334455555 44344444321 1455554 4444442 111 14578999999999999999
Q ss_pred CChhhHHHHHhhc
Q 026066 230 TSPFQIEVHFLLS 242 (244)
Q Consensus 230 ~~~~~l~~~l~~~ 242 (244)
++++++++.|+-+
T Consensus 145 Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 145 LSPAEVQQVIALL 157 (160)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999888654
No 147
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.7e-05 Score=71.23 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=36.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC-CcEEEEEe
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ-GFEILAFP 148 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~-~~~vv~vs 148 (244)
.+|=|||.||++||++|+...|.+++|.++|++. ++.|.-+.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEec
Confidence 5688999999999999999999999999999986 35555553
No 148
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.93 E-value=6.4e-05 Score=49.22 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=30.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+..|+++||++|....+.|+++.+.+ .++.+..+++|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 67799999999999999999887654 24788888765
No 149
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.92 E-value=5.8e-05 Score=47.55 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=32.7
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~ 151 (244)
|+.||..||+.|....+.+.++ ++.+.++.++.++++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence 5789999999999999999998 5556679999999873
No 150
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00047 Score=52.35 Aligned_cols=103 Identities=22% Similarity=0.205 Sum_probs=66.6
Q ss_pred CCCCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee-e
Q 026066 105 KFKGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD-K 180 (244)
Q Consensus 105 ~~~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-d 180 (244)
...||+.++.|-...|+.|...-.++ .++++-++++ +.++.+.+.. + -|++- +
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~-------s---------------kpv~f~~ 95 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISY-------S---------------KPVLFKV 95 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEecc-------C---------------cceEeec
Confidence 34689999999999999998665554 4566666654 7777776431 0 01110 0
Q ss_pred cCC-CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 181 VDV-NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 181 ~d~-~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
.+. ......++.+-++ ++.+|+.++.|++|+.+....|..+++++...++
T Consensus 96 g~kee~~s~~ELa~kf~----------vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 96 GDKEEKMSTEELAQKFA----------VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CceeeeecHHHHHHHhc----------cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 000 0001112222221 6667999999999999999999999998776654
No 151
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0004 Score=52.64 Aligned_cols=134 Identities=20% Similarity=0.215 Sum_probs=85.0
Q ss_pred hhhhccCCcccC--eE-EEcC----CCCeeecCCC-CCCEEEEE-EccCCCCC-ChHHHHHHHHHHHHHhhCCc-EEEEE
Q 026066 79 HATAATEKSLYD--FT-VKDI----DGKDVPLSKF-KGKVLLIV-NVASRCGL-TPSNYSELSHLYEKYKTQGF-EILAF 147 (244)
Q Consensus 79 ~~~~~~g~~~pd--f~-l~~~----~G~~v~l~~~-~Gk~vll~-F~a~~C~~-C~~~~~~L~~l~~~~~~~~~-~vv~v 147 (244)
.+...+|+.+|+ .+ +.+. .+.+++++++ +||.+||+ ..+.+.|. |..++|.+.+-.++++.+|+ +|+.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 356679999999 43 2222 2237888885 88766553 45788888 57889999999999999996 57788
Q ss_pred ecCCCCCCCCCCHHHHHHHHHhhcCCC--cceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEe
Q 026066 148 PCNQFGGQEPGSNPEIKEFACTRFKAE--FPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 148 s~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~ 225 (244)
++| ++..++.|. +.++.+ ..++ .|.+|.. .+..+....-.... ..+..-+...++ .||+|...
T Consensus 86 SVn--------DpFv~~aW~-k~~g~~~~V~f~--aD~~g~f-tk~lgleld~~d~~--~g~RS~R~a~vv-engkV~~~ 150 (171)
T KOG0541|consen 86 SVN--------DPFVMKAWA-KSLGANDHVKFV--ADPAGEF-TKSLGLELDLSDKL--LGVRSRRYALVV-ENGKVTVV 150 (171)
T ss_pred ecC--------cHHHHHHHH-hhcCccceEEEE--ecCCCce-eeeccceeeecccc--CccccccEEEEE-eCCeEEEE
Confidence 887 689999998 777764 3445 5555552 22333211111111 112222444555 78998876
Q ss_pred cC
Q 026066 226 YP 227 (244)
Q Consensus 226 ~~ 227 (244)
..
T Consensus 151 nv 152 (171)
T KOG0541|consen 151 NV 152 (171)
T ss_pred Ee
Confidence 54
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.74 E-value=0.00031 Score=46.28 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+..|+++||+.|....+.|.+ .++.+..++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence 456889999999987766653 46888888776
No 153
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.66 E-value=0.0012 Score=52.92 Aligned_cols=84 Identities=14% Similarity=0.251 Sum_probs=66.7
Q ss_pred cccCeEEEcCCCCeeecCCC-CCC--EEEEEEc-----cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCC
Q 026066 87 SLYDFTVKDIDGKDVPLSKF-KGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPG 158 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l~~~-~Gk--~vll~F~-----a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~ 158 (244)
.-.++.+...+|+ ++|.|+ .|| .+|..|. ...|+.|...+..++-....+..+++.++.|+- .
T Consensus 45 v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr--------a 115 (211)
T PF05988_consen 45 VDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR--------A 115 (211)
T ss_pred CCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC--------C
Confidence 3345778778887 888884 776 4444555 468999999999997777888888999999994 4
Q ss_pred CHHHHHHHHHhhcCCCcceeee
Q 026066 159 SNPEIKEFACTRFKAEFPIFDK 180 (244)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~l~d 180 (244)
..+++..|. ++-|-.+|+++.
T Consensus 116 P~~~i~afk-~rmGW~~pw~Ss 136 (211)
T PF05988_consen 116 PLEKIEAFK-RRMGWTFPWYSS 136 (211)
T ss_pred CHHHHHHHH-HhcCCCceEEEc
Confidence 789999997 788888999953
No 154
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.65 E-value=0.00033 Score=51.30 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=55.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC--CcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
+.+.+||.|+++| |.|.+ .|...+|..+|... .+.|--|.+|+++ ..+..+.. ++|+++- .
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------~~~~~~L~-~~y~I~~--------~ 79 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------EKLNMELG-ERYKLDK--------E 79 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------chhhHHHH-HHhCCCc--------C
Confidence 4468999999955 44444 47777777777543 2666667765311 11223343 5555320 0
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCc--EEEecCCC-CChhhHHHHHhh
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK--VIERYPPT-TSPFQIEVHFLL 241 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~--i~~~~~g~-~~~~~l~~~l~~ 241 (244)
..|+++|+. +|. ....|.|. .+.+.|.+.|.+
T Consensus 80 ------------------------gyPTl~lF~-~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 80 ------------------------SYPVIYLFH-GGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred ------------------------CCCEEEEEe-CCCcCCCccCCCCcccHHHHHHHHHh
Confidence 227777774 453 23467785 888999888875
No 155
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00043 Score=61.41 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=36.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.+++.+|.||++||++|.+..+...++...+++. +.+..|.++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~ 88 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCD 88 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCch
Confidence 3568999999999999999999999999999873 666666543
No 156
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.47 E-value=0.00075 Score=49.51 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEEccC----CCCCChHHH--HHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 104 SKFKGKVLLIVNVAS----RCGLTPSNY--SELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~----~C~~C~~~~--~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
..-++|+++|+++.+ ||..|+..+ +++.+..+ .++.+++.+++. . +..+.. ..++
T Consensus 13 ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~~--------~-eg~~la-~~l~----- 73 (116)
T cd02991 13 AKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVAK--------P-EGYRVS-QALR----- 73 (116)
T ss_pred HHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecCC--------h-HHHHHH-HHhC-----
Confidence 344689999999988 778887555 34444332 347777776641 2 122222 1111
Q ss_pred eeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEE---CCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLV---DKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lI---D~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
+...|...+| +.+.+++.+..|..+++++...|+..
T Consensus 74 -----------------------------~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 74 -----------------------------ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred -----------------------------CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 1223888888 77778899999999999999888764
No 157
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.46 E-value=0.00026 Score=59.37 Aligned_cols=87 Identities=11% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC---C-cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ---G-FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDV 183 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~---~-~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~ 183 (244)
...|+|.|+|+||+..+...|.+.+..++|+++ | +..-.|.+|. ...+..+|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~------------e~~ia~ky~----------- 69 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDK------------EDDIADKYH----------- 69 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccch------------hhHHhhhhc-----------
Confidence 468999999999999999999998887776643 2 3333344441 111112221
Q ss_pred CCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEE-ecCCCCChhhHHHHHhh
Q 026066 184 NGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIE-RYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 184 ~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~-~~~g~~~~~~l~~~l~~ 241 (244)
|.-+|+.=|+ ++|.+.. .|.|....+.|.+.|++
T Consensus 70 -----------------------I~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~k 104 (375)
T KOG0912|consen 70 -----------------------INKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEK 104 (375)
T ss_pred -----------------------cccCceeeee-eccchhhhhhccchhHHHHHHHHHH
Confidence 2222666666 7888876 67888888888877765
No 158
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.44 E-value=0.00047 Score=57.46 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=75.8
Q ss_pred ccCCcccCeEEEcCCCCeeecCC-CCCCEEEEEEc-cCCCCCChHHHHHHHHHHHHHhh-C--CcEEEEEecCCCCCCCC
Q 026066 83 ATEKSLYDFTVKDIDGKDVPLSK-FKGKVLLIVNV-ASRCGLTPSNYSELSHLYEKYKT-Q--GFEILAFPCNQFGGQEP 157 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~-~~Gk~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~-~--~~~vv~vs~d~~~~~~~ 157 (244)
......|+|..++++|+.+++.+ ++||+.||..+ ..|-..|....-. ...++|.. . .+++|-|++-
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~------- 166 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLI------- 166 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecc-------
Confidence 34556899999999999888876 58997666544 4443333332211 22233322 2 5899999864
Q ss_pred CCHHHHHHHHHhhc------------CCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEe
Q 026066 158 GSNPEIKEFACTRF------------KAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER 225 (244)
Q Consensus 158 ~~~~~~~~~~~~~~------------~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~ 225 (244)
...++.++..-+ ...|-+.. .+.....+-..+ + . .-..+..+||||.+|+|++.
T Consensus 167 --e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~----~~~~~~~iRe~L----g-i---~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 167 --ENWLKSWLVKLFMGSLRKSIPEERHDRYFIVY----RGQLSDDIREAL----G-I---NNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred --hHHHHHHHHHHHhhhhhccCCHHHCceEEEEe----CCcccHHHHHHh----C-C---CCCCcCeEEEECCCCeEEeC
Confidence 233444442111 01111111 010011111111 1 0 01112678999999999999
Q ss_pred cCCCCChhhHHHHHh
Q 026066 226 YPPTTSPFQIEVHFL 240 (244)
Q Consensus 226 ~~g~~~~~~l~~~l~ 240 (244)
..|..++++++...+
T Consensus 233 gsG~At~~E~~~L~k 247 (252)
T PF05176_consen 233 GSGPATPEELESLWK 247 (252)
T ss_pred ccCCCCHHHHHHHHH
Confidence 999999999877654
No 159
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.43 E-value=0.00088 Score=44.73 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+..||++||++|+...+.|.++ ++.+-.|++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5679999999999877766543 4555556665
No 160
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=97.35 E-value=0.0018 Score=47.17 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhH----------------
Q 026066 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQ---------------- 193 (244)
Q Consensus 130 L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~---------------- 193 (244)
|.+..+++.+.|+.+|.|.+. +.+.+++|+ +..+.+++++.|.+.. +++.++
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~-~~~~~p~~ly~D~~~~---lY~~lg~~~~~~~~~~~~~~~~ 69 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFC-ELTGFPFPLYVDPERK---LYKALGLKRGLKWSLLPPALWS 69 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHH-hccCCCCcEEEeCcHH---HHHHhCCccccccCCCchHHHH
Confidence 567788888899999999975 566699998 7788899988554311 111111
Q ss_pred -------hhhhc-cCCCc-CCccccceeEEEECCCCcEEEecCC
Q 026066 194 -------FLKSS-AGGFL-GDLVKWNFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 194 -------~l~~~-~~~~~-~~~i~~~P~~~lID~~G~i~~~~~g 228 (244)
..+.. ..+.. ...+......||+|++|+|++.|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~ 113 (115)
T PF13911_consen 70 GLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD 113 (115)
T ss_pred HHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence 11110 11112 3345555889999999999988753
No 161
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.34 E-value=0.0019 Score=53.93 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=64.8
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhh--------cCCCcce-
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--------FKAEFPI- 177 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~--------~~~~~p~- 177 (244)
.+|.+|+.|.-..||+|++...++.++.+. .+++|..+.+-- ..+++.......++.+ +...+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~---l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS---GKVQLRHILVGI---IKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc---CceEEEEEeccc---cCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 567899999999999999998888776543 125555553321 1223333222221111 1111110
Q ss_pred -eeecCCCC----CCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 178 -FDKVDVNG----PNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 178 -l~d~d~~~----~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
+....... ..+.+.+. +.... ++..+|++|+.|.+|++. ...|..++++|++.|.+
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~-l~~~l------Gv~GTPaiv~~d~~G~~~-~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQK-LMDDL------GANATPAIYYMDKDGTLQ-QVVGLPDPAQLAEIMGP 250 (251)
T ss_pred CCCccccCCHHHHHHHHHHHH-HHHHc------CCCCCCEEEEECCCCCEE-EecCCCCHHHHHHHhCC
Confidence 00000000 00111111 11222 277789999999999753 34577788999998864
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.29 E-value=0.0012 Score=54.48 Aligned_cols=119 Identities=14% Similarity=0.228 Sum_probs=62.9
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHH-HHHhhcCCCcc-eeee----
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKE-FACTRFKAEFP-IFDK---- 180 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~-~~~~~~~~~~p-~l~d---- 180 (244)
.||.+|+.|....||+|++..+++.++. +.+++|..+...-.+ ..++....... |+.++....+. ....
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~v~v~~~~~P~~g-~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALGITVRYLAFPRQG-LDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCCeEEEEEeccCCC-CCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 5789999999999999999988877654 345776665433111 11112222222 22110000000 0000
Q ss_pred -cCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 181 -VDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 181 -~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
.... ..+...+. +.... +|.++|++++ +||+++ .|..++++|++.|++.+
T Consensus 181 ~~~c~-~~v~~~~~-la~~l------gi~gTPtiv~--~~G~~~---~G~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 181 PASCD-VDIADHYA-LGVQF------GVQGTPAIVL--SNGTLV---PGYQGPKEMKAFLDEHQ 231 (232)
T ss_pred ccccc-chHHHhHH-HHHHc------CCccccEEEE--cCCeEe---eCCCCHHHHHHHHHHcc
Confidence 0000 11111111 22222 2777898774 578876 67778999999998754
No 163
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.21 E-value=0.0028 Score=47.36 Aligned_cols=94 Identities=9% Similarity=0.021 Sum_probs=63.4
Q ss_pred ecCCCC--CCEEEEEEcc--CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 102 PLSKFK--GKVLLIVNVA--SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 102 ~l~~~~--Gk~vll~F~a--~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
+++++. +...+|+|-+ ..+|-+....-.|.++.++|.+..+.++.|++|. .. +.. .+
T Consensus 26 ~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~---~LA-~~------- 86 (132)
T PRK11509 26 RLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SE---AIG-DR------- 86 (132)
T ss_pred cHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CH---HHH-HH-------
Confidence 455552 2345555553 3556666677778888889865448888888773 11 111 22
Q ss_pred eeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 178 FDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 178 l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|+ |..+|+++++ +||+++.+..|..+.+++.+.|+++
T Consensus 87 --------------fg-------------V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 87 --------------FG-------------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred --------------cC-------------CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHH
Confidence 22 3334988877 9999999999999999999998864
No 164
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.05 E-value=0.0013 Score=44.71 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|+++|||+|....+.|.++. +.. .++++-|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC
Confidence 46788999999999988888865 221 2677777654
No 165
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=97.00 E-value=0.011 Score=43.52 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=62.2
Q ss_pred cCCCCCC-EEEEEEc-cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCC-CCCCHHHHHHHHHhhcCCCcceee
Q 026066 103 LSKFKGK-VLLIVNV-ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ-EPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 103 l~~~~Gk-~vll~F~-a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
|+++++| -+||.|- ...-+.-..++..|.+-...+.++++.++.|.-+..... ..-+...
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~----------------- 65 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPED----------------- 65 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHH-----------------
Confidence 5666665 2334343 333344566777888877788888888888853211000 0001111
Q ss_pred ecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 180 d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
+..+...++...+ ..+.+||++||.+..++....++++|-+.|+.
T Consensus 66 --------~~~lr~~l~~~~~---------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 66 --------IQALRKRLRIPPG---------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred --------HHHHHHHhCCCCC---------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 1222222221111 16789999999999999988899999888875
No 166
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.97 E-value=0.0054 Score=47.53 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=18.3
Q ss_pred eecCCCCCCEEEEEEccCCCCCChHHHH
Q 026066 101 VPLSKFKGKVLLIVNVASRCGLTPSNYS 128 (244)
Q Consensus 101 v~l~~~~Gk~vll~F~a~~C~~C~~~~~ 128 (244)
+....-++|+|+|.+.++||..|..+..
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 3344446899999999999999997654
No 167
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.71 E-value=0.0039 Score=41.96 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.4
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 116 ~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
+..+|+.|......++++.++++ ..++++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 57779999988888888888774 22444443
No 168
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.64 E-value=0.0037 Score=52.55 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=29.1
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcE
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFE 143 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~ 143 (244)
...+|+||++||..|++.-|..++.-.++++-|+-
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCc
Confidence 47889999999999999999888887777766543
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.45 E-value=0.0062 Score=48.85 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=25.5
Q ss_pred eecCCCCCCEEEEEEccCCCCCChHHHHHHHH
Q 026066 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 101 v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~ 132 (244)
+.+..-.+++.|+.|....||+|++..+.+.+
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 33333347899999999999999999888876
No 170
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.013 Score=52.10 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=34.7
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhh-CCcEEEEEec
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKT-QGFEILAFPC 149 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~-~~~~vv~vs~ 149 (244)
...++.|++.||++|+...+.+.++...++. .++.+..+.+
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 4788889999999999999999999998874 5577777764
No 171
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.042 Score=43.22 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=44.9
Q ss_pred EcCCCCeeecCCC-CC-CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 94 KDIDGKDVPLSKF-KG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 94 ~~~~G~~v~l~~~-~G-k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.+..|+.|.+.++ +. +.||...--..|-.|+++...|.++..-....|++.|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778899999886 33 3555555588999999999999999888888899999986
No 172
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.0024 Score=58.01 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=43.5
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCC--cEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC-cceee
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~ 179 (244)
|.-+|.|+++||+.|+...|.++++.+...+-. +.|-+|++- .++-.+. +.+++++ ||.+.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~l-CRef~V~~~Ptlr 121 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKL-CREFSVSGYPTLR 121 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhh-HhhcCCCCCceee
Confidence 467899999999999999999999988776543 556667654 2223333 3677766 66553
No 173
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=0.081 Score=42.63 Aligned_cols=82 Identities=13% Similarity=0.252 Sum_probs=60.6
Q ss_pred CeEEEcCCCCeeecCCC-CCC--EEEEEEc-----cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHH
Q 026066 90 DFTVKDIDGKDVPLSKF-KGK--VLLIVNV-----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP 161 (244)
Q Consensus 90 df~l~~~~G~~v~l~~~-~Gk--~vll~F~-----a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~ 161 (244)
++.+...+|+ .+|.|+ .|| .+|-.|+ ...|+.|...+..+.-....+...++.++.|+- ...+
T Consensus 54 ~Y~Fe~~~G~-~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsR--------APl~ 124 (247)
T COG4312 54 DYVFETENGK-KSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSR--------APLE 124 (247)
T ss_pred eeEeecCCcc-hhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEec--------CcHH
Confidence 4556666774 678774 676 3333342 347999999998887777778888899999994 4678
Q ss_pred HHHHHHHhhcCCCcceeeec
Q 026066 162 EIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 162 ~~~~~~~~~~~~~~p~l~d~ 181 (244)
++..+- ++.|-.||+++..
T Consensus 125 ~l~~~k-~rmGW~f~w~Ss~ 143 (247)
T COG4312 125 ELVAYK-RRMGWQFPWVSST 143 (247)
T ss_pred HHHHHH-HhcCCcceeEecc
Confidence 888886 7888889998643
No 174
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.94 E-value=0.022 Score=41.82 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=32.5
Q ss_pred CCCEEEEEEcc-------CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVA-------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a-------~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.|++++|.|.+ +|||.|....|.+++..++..+ +..+|.|.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 56788888874 4999999999999998887544 5888888754
No 175
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.93 E-value=0.025 Score=38.72 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=30.0
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|..|..+||+.|......|+++..++ .++.+.-|+++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence 56788999999999999999998765 35777777665
No 176
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.62 E-value=0.018 Score=43.55 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
.++++|+.|+..+||+|....+.+.++..++++ +.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence 468899999999999999999999998877754 45554433
No 177
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.46 E-value=0.12 Score=43.44 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=34.0
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+-+|||.||-+.++.|...-..|..|+.+|.. +.++-|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~ 186 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS 186 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence 45899999999999999999999999999986 899988743
No 178
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.21 E-value=0.1 Score=48.74 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.++..+-.|...+||.|+.....++++..+.. ++..-.|.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 34445666789999999988888888887765 35555554
No 179
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.19 E-value=0.11 Score=37.19 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=48.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
..++++|+=..+.||.....+.++++.++...+. +.+..|.+- ....+.+.+.+++++.. .
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~H----------e 78 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVKH----------E 78 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCCc----------C
Confidence 3578888778999999999999999999888775 777777653 34445555545543211 1
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEec
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERY 226 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~ 226 (244)
.|..+|| +||++++.-
T Consensus 79 -----------------------SPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 79 -----------------------SPQVILI-KNGKVVWHA 94 (105)
T ss_dssp -----------------------SSEEEEE-ETTEEEEEE
T ss_pred -----------------------CCcEEEE-ECCEEEEEC
Confidence 1888888 889998754
No 180
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.14 E-value=0.049 Score=41.69 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=38.7
Q ss_pred eecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHH--hhCCcEEEEEecC
Q 026066 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKY--KTQGFEILAFPCN 150 (244)
Q Consensus 101 v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~--~~~~~~vv~vs~d 150 (244)
+.+-+-.++++|+.|+...||+|....+.+.++.+++ .+ .+.++...+.
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 4455556789999999999999999999999999998 43 3888888763
No 181
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.06 E-value=0.12 Score=33.41 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
++.|...||+.|......|.+ .++.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 456789999999976655544 45666677766
No 182
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=94.80 E-value=0.077 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=24.3
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||.|......|.++.. .++++-|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 456789999999988777776533 3566666654
No 183
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.094 Score=38.19 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCEEEEEEcc--------CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVA--------SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a--------~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+|+-+.+.|.+ +|||.|....|.+.+..+...+ ++.+|.|.+-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 56777788873 5999999999999988886655 4888888754
No 184
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.38 E-value=0.11 Score=32.80 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=23.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|...|||.|......| .+.|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4668899999999776666 3456777777776
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.82 E-value=0.3 Score=32.12 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=23.2
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|..|..++||.|......|++ +|+.+-.+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD 33 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence 456788999999977666654 45666677766
No 186
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.74 E-value=0.17 Score=32.50 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=22.9
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||.|......|.+. ++.+.-++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECC
Confidence 4567899999999877776654 3666666655
No 187
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.68 E-value=0.19 Score=33.60 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=21.4
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..|+.+|||.|......|++ .|+.+--+.++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~ 32 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD 32 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence 46789999999977666654 34555555554
No 188
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.66 E-value=0.048 Score=44.39 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=30.1
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.|.+ +|.|+++|||.|....+.+..+..--.+.++.+-.|.
T Consensus 39 ~gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD 79 (248)
T KOG0913|consen 39 TGEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD 79 (248)
T ss_pred chHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence 4544 5679999999999999999887765555565554443
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.52 E-value=0.71 Score=41.57 Aligned_cols=72 Identities=7% Similarity=0.105 Sum_probs=54.0
Q ss_pred chhhhccCCcccCeEEEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 78 VHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 78 ~~~~~~~g~~~pdf~l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..+....++.+-.+.+.-.+|+.++|.+++|..=+|...++- ..+...+...+...+++.++||.||-|..+
T Consensus 266 q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 266 QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 345556667777777777778899999999964333343333 467778888888899999999999999876
No 190
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.50 E-value=0.13 Score=40.03 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
.+++.|+.|+...||+|...-+.+.++.+++.+ ++.+..+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence 578999999999999999999999999998854 477665554
No 191
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.31 E-value=0.48 Score=43.84 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=30.6
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
+.++.-+..|....||+|+.....++++..+.. ++..-.|.
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id 154 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMID 154 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 344556778999999999998888888877644 36666663
No 192
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.24 E-value=0.25 Score=33.93 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=25.6
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||.|......|.++..++. ++.+.-+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 456778999999988887777654432 3555556554
No 193
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.14 E-value=0.51 Score=34.17 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.8
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHh
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYK 138 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~ 138 (244)
|.+||.|.-+.|+.|...-..|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999988777877776664
No 194
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.00 E-value=0.43 Score=32.39 Aligned_cols=32 Identities=9% Similarity=0.317 Sum_probs=23.6
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+..|..+||+.|......|. ++|+.+-.+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence 45677899999997666553 467887777776
No 195
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.75 E-value=0.37 Score=32.40 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=24.8
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+.-|+.|..+||+.|......|. +.|+.+..+.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~ 41 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLG 41 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECC
Confidence 33455688999999998766664 345666667765
No 196
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.30 E-value=0.75 Score=30.20 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=22.5
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..|..++|+.|......|++ .|+.+..+.++
T Consensus 4 ~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 45678999999987766664 46666667665
No 197
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.64 Score=31.47 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=28.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+..|.-++||+|......|. .+|+...-|.++. +..++.++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~ 45 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMV 45 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHH
Confidence 44566789999997766555 4567666666652 2334666666
No 198
>PHA03050 glutaredoxin; Provisional
Probab=91.82 E-value=0.31 Score=35.15 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.9
Q ss_pred EEEEccCCCCCChHHHHHHHHH
Q 026066 112 LIVNVASRCGLTPSNYSELSHL 133 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l 133 (244)
|+.|..+|||+|......|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 4568899999999776666554
No 199
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.79 E-value=1 Score=41.66 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
+.++.-+..|....||+|+.....++++..+.. ++..-.|
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i 154 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI 154 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE
Confidence 345566788999999999988888888877755 3555554
No 200
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.18 Score=40.71 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=37.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+.+..||.|++.|.+-|....|.+.+|..+|...++.+=.|.+.
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG 186 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG 186 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec
Confidence 33588999999999999999999999999999887777666554
No 201
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.22 E-value=0.55 Score=34.24 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=34.1
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
.|+..+|+.|+.....|.+ +|+.+..+.+. .++.+.+++.+++ +..+..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~-~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDIL-SLLEDGI 52 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHH-HHcCCCH
Confidence 4678999999987766654 45666666654 2355677888888 6655433
No 202
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.03 E-value=0.64 Score=32.86 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=20.4
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||+|......|.+ .|+.+-.+.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid 41 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID 41 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence 445788999999976655543 24444445555
No 203
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=90.83 E-value=0.79 Score=35.61 Aligned_cols=89 Identities=18% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCE-EEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 108 GKV-LLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 108 Gk~-vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
+++ +++.|..............|.++..+++++ +.++.+..+. . .+.+ +.++++ ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~--------~---~~~~-~~~~i~----------~~ 150 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADD--------F---PRLL-KYFGID----------ED 150 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTT--------T---HHHH-HHTTTT----------TS
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHH--------h---HHHH-HHcCCC----------Cc
Confidence 445 566664444445566666777777777765 7777776431 1 2222 222211 00
Q ss_pred CcchhhHhhhhccCCCcCCccccceeEEEECCC-CcEEEecCCCCChhhHHHHHhh
Q 026066 187 NTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKN-GKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 187 ~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~-G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
..|..+|+|.+ ++..+...+..+++.+.+.|++
T Consensus 151 ----------------------~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 ----------------------DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp ----------------------SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred ----------------------cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 11999999954 4443445677788888888764
No 204
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=90.76 E-value=0.71 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=22.8
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..|...+||.|......|.+ +|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 45678999999987777753 46777667665
No 205
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.64 E-value=1.3 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=22.5
Q ss_pred CCCEEEEEEcc----CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a----~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
++++|+|+--. +|||.|......|.+. |+.+..+.++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 44566664332 6999999766655543 4555555554
No 206
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=90.58 E-value=1.2 Score=33.24 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=55.1
Q ss_pred CEEEEEEcc--CCCC-CCh-HHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCC
Q 026066 109 KVLLIVNVA--SRCG-LTP-SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVN 184 (244)
Q Consensus 109 k~vll~F~a--~~C~-~C~-~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~ 184 (244)
++-+|.|.- ..|. -+. .....|.++.++|+++.+.++.+..++ ... +. +.+++.
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~-~~fgl~---------- 78 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LE-EALNIG---------- 78 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HH-HHcCCC----------
Confidence 354555542 2343 243 346788899999998878888887552 111 22 332321
Q ss_pred CCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEe-cCCCCChhhHHHHHhhc
Q 026066 185 GPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIER-YPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~-~~g~~~~~~l~~~l~~~ 242 (244)
+. ..|.+++++.++. .+. +.|..+.+.+.+.++++
T Consensus 79 ~~----------------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 79 GF----------------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred cc----------------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHHH
Confidence 00 0188899998776 565 67888889888888764
No 207
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=90.46 E-value=0.88 Score=29.75 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=22.6
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||.|......|.+ .|+.+..+.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 455778999999987666653 45666666665
No 208
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.22 E-value=1.1 Score=32.99 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=41.1
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p 176 (244)
..|.|+|-|.-.|-|.|..+-..|.+..++..+- .+|..+.+| ++..|. +-+++..|
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid-----------eV~~~~-~~~~l~~p 78 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID-----------EVPDFV-KMYELYDP 78 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc-----------hhhhhh-hhhcccCC
Confidence 3479999999999999999999999999998763 444444433 556665 55554433
No 209
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.18 E-value=1.5 Score=30.78 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=22.6
Q ss_pred CCEEEEEEc----cCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 108 GKVLLIVNV----ASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 108 Gk~vll~F~----a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
.+.|+|+-. .+|||+|......|.+ .|+.+..+.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 345666543 3899999977665554 34555566654
No 210
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=90.18 E-value=3.3 Score=29.90 Aligned_cols=32 Identities=6% Similarity=-0.271 Sum_probs=23.8
Q ss_pred eeEEEECCCCcEEEecCCCC-ChhhHHHHHhhcc
Q 026066 211 FEKFLVDKNGKVIERYPPTT-SPFQIEVHFLLSR 243 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~-~~~~l~~~l~~~~ 243 (244)
|.+.|+|.++ ..+...+.. +.+.|.+.+++++
T Consensus 79 P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 8888998776 445456666 7888999888753
No 211
>PRK10638 glutaredoxin 3; Provisional
Probab=89.79 E-value=1.4 Score=29.83 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=22.0
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|..|...|||.|......|++ +|+...-+.+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 345668999999977666664 45555556665
No 212
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.44 E-value=0.42 Score=38.58 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=32.5
Q ss_pred CCCEEEEEEccCCCCCChHHHHHH---HHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSEL---SHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L---~~l~~~~~~~~~~vv~vs~d 150 (244)
.|++.|+.|+.-.||+|...-+.+ ..+.+.+.+ ++.++.+.++
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~ 81 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE 81 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence 468889999999999999877765 667777754 4677666553
No 213
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.2 Score=40.57 Aligned_cols=42 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+++.+++.||+.||..|......+.++.+.+ .++.++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7789999999999999997777777777766 44777777655
No 214
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=88.47 E-value=3.6 Score=34.61 Aligned_cols=135 Identities=15% Similarity=0.101 Sum_probs=67.7
Q ss_pred ccCCcccCeEEEcCCCCeeecCCCCC-CEEEEEEccCCCCCChHHHHHHHHHHHHHh--hCCcEEEEEecCCCCCCCCCC
Q 026066 83 ATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYK--TQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 83 ~~g~~~pdf~l~~~~G~~v~l~~~~G-k~vll~F~a~~C~~C~~~~~~L~~l~~~~~--~~~~~vv~vs~d~~~~~~~~~ 159 (244)
+.=+.+|-|++.|.+|+.+-.+.-.| |.+-+++. .=...-.-|+++..+-. ..++.|+.|+.+
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-----~qedA~afL~~lk~~~p~l~~~~kV~pvsL~--------- 142 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-----RQEDAEAFLAQLRKRKPEVGSQAKVVPITLD--------- 142 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-----CHHHHHHHHHHHHhhCccccCCceEEEEEHH---------
Confidence 34446899999999999877765545 55544332 11101223334333322 235899999876
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcE-EEecCCCCChhhHHHH
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKV-IERYPPTTSPFQIEVH 238 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i-~~~~~g~~~~~~l~~~ 238 (244)
++-+.. ..++.|.++ .|. .++....+.+.....+..|.++... ..+.|.++++- +=.| .+.++++..
T Consensus 143 --~vYkl~--~e~l~F~fi--P~~--~qV~~A~~ll~~~~~~~~GVPlF~~-~~Lti~~~n~~~iP~F---F~Kedlq~~ 210 (270)
T TIGR00995 143 --QVYKLK--VEGIGFRFL--PDP--AQIKNALELPAANSEYFDGVPVFQS-GLLVVQKKNERYCPVY---FSKEDIEQE 210 (270)
T ss_pred --HHHHHh--hcCccEEEe--CCH--HHHHHHHHHHhcCccCCCCccEEee-cceEEEeCCeEEEeeE---eeHHHHHHH
Confidence 233333 234778777 332 2233333333111223333333222 23344444442 2222 266788888
Q ss_pred Hhhcc
Q 026066 239 FLLSR 243 (244)
Q Consensus 239 l~~~~ 243 (244)
|++.+
T Consensus 211 L~~~k 215 (270)
T TIGR00995 211 LSKFK 215 (270)
T ss_pred HHHHh
Confidence 87754
No 215
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=88.26 E-value=0.59 Score=31.75 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=29.2
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|..|+...||.|....+.+.++...+.+ ++.+..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 4578899999999999999998754444 4777766655
No 216
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=5.6 Score=37.67 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=19.9
Q ss_pred CCCCEEEEEEccCCCCCChHHHH
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYS 128 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~ 128 (244)
-++|||+|..-++||..|..+..
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ 63 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAH 63 (667)
T ss_pred HhCCCEEEEeccccccchHHHhh
Confidence 36899999999999999997654
No 217
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=86.75 E-value=3.1 Score=37.01 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=30.4
Q ss_pred cceeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 209 WNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 209 ~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
.+|..|+|+..|+-+++..|....++|...|+|.
T Consensus 77 ~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv 110 (506)
T KOG2507|consen 77 SVPSIFFIGFSGTPLEVITGFVTADELASSIEKV 110 (506)
T ss_pred cccceeeecCCCceeEEeeccccHHHHHHHHHHH
Confidence 3499999999999999999999999998888773
No 218
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=86.74 E-value=13 Score=28.89 Aligned_cols=51 Identities=18% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCcccCeEEEcC-CCCeeecCCC---CCCEEEEEEccCCCCCChHHHHHHHHHHHHH
Q 026066 85 EKSLYDFTVKDI-DGKDVPLSKF---KGKVLLIVNVASRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 85 g~~~pdf~l~~~-~G~~v~l~~~---~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~ 137 (244)
|..+|++.+... +|+++.|.+. .|++=|+.|-...-+ ......|.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~--~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAP--AQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCc--hhHHHHHHHHHHHH
Confidence 566788888874 8898888764 689998888654322 33333444444433
No 219
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=86.53 E-value=0.98 Score=36.95 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=27.6
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
-.+||||+.|+|++...|..+|+++++.+...
T Consensus 249 GyV~L~D~s~kIRW~g~G~aTp~Eve~L~~~~ 280 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTATPEEVEQLLSCT 280 (287)
T ss_pred EEEEEEccCceEEEeecCCCCHHHHHHHHHHH
Confidence 45799999999999999999999988876543
No 220
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.65 E-value=2.3 Score=35.04 Aligned_cols=54 Identities=22% Similarity=0.263 Sum_probs=39.8
Q ss_pred EcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 94 KDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 94 ~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
...+++.+.+-+..++++++.|....||+|.+.++.+.+.+..+++..+.+.-+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 344566666666666899999999999999999999999777776654443333
No 221
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.41 E-value=2.5 Score=29.93 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=30.9
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|..++|+.|++....|++ +|+.+-.+.+. ..+.+.+++.++. ...+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~~l~~~~-~~~~ 49 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYL----KEPPTKEELKELL-AKLG 49 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeec----cCCCCHHHHHHHH-HhcC
Confidence 35678999999977655554 45554445443 2345678888887 4444
No 222
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=83.27 E-value=1.9 Score=32.84 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=27.2
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
-.++++|++|+|.+...|..+..++++.|.-
T Consensus 148 SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~l 178 (184)
T COG3054 148 SAVVVLDKDGRVKFVKEGALTQAEVQQVIDL 178 (184)
T ss_pred ceEEEEcCCCcEEEEecCCccHHHHHHHHHH
Confidence 5679999999999999999999888887754
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=83.22 E-value=2.5 Score=30.46 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=31.8
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|..++|+.|++...-|++ +|+.+..+.+. .++.+.+++.+++ +..+.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~-~~~~~ 50 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWL-EKSGL 50 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHH-HHcCC
Confidence 4668999999977666654 45555555544 2245678888888 55443
No 224
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.17 E-value=2.8 Score=29.96 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=31.8
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|..++|+.|++....|.+ +|+.+-.+.+. .++-+.+++.+++ ++.+
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~----~~p~s~~eL~~~l-~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYR----KDGLDAATLERWL-AKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecc----cCCCCHHHHHHHH-HHhC
Confidence 45678999999987666654 34444444432 2355889999998 5555
No 225
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=82.96 E-value=3.3 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
..|+..+|+.|++....|.+ +|+.+..+.+. .++.+.+++.+|+ +..+..
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~-~~~~~~ 52 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEIL-SLTENG 52 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHH-HHhcCC
Confidence 34668999999977666654 45666666654 2345788899998 555444
No 226
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=82.32 E-value=2.7 Score=31.32 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=32.4
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
..|...+|+.|++....|.+ +|+.+-.+.+. .++.+.+++.+++ +..+..
T Consensus 3 ~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~----~~~~~~~eL~~~l-~~~~~g 52 (131)
T PRK01655 3 TLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIF----SSPLTIDEIKQIL-RMTEDG 52 (131)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCcEEeecc----CChhhHHHHHHHH-HHhcCC
Confidence 45668999999987655543 45655555543 2345678888888 554433
No 227
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=81.65 E-value=19 Score=27.21 Aligned_cols=32 Identities=22% Similarity=0.473 Sum_probs=23.3
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
++++..+.|+=|..-+..| +.+|++|=.+..|
T Consensus 28 ~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~ 59 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETD 59 (149)
T ss_pred EEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecC
Confidence 5567799999998665555 3568888777755
No 228
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.03 E-value=27 Score=26.91 Aligned_cols=102 Identities=14% Similarity=0.149 Sum_probs=62.3
Q ss_pred ccCeEEEcCCCCeeecCCCCC-CEEEEEEccCCCC-------CChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCC
Q 026066 88 LYDFTVKDIDGKDVPLSKFKG-KVLLIVNVASRCG-------LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGS 159 (244)
Q Consensus 88 ~pdf~l~~~~G~~v~l~~~~G-k~vll~F~a~~C~-------~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~ 159 (244)
.|..++++...-++.+.+++| |.|+++ .+.|- .-..+++.+.++...|.++++.++.=+. |..+.|.
T Consensus 22 ~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsa---G~~~~D~ 96 (190)
T KOG2961|consen 22 LPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSA---GLTEYDH 96 (190)
T ss_pred ccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCc---CccccCC
Confidence 455555555555566667666 566654 34442 3456888999999999988776665443 3334455
Q ss_pred HHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhh
Q 026066 160 NPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLK 196 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~ 196 (244)
..+..+.++++ ...|++.....+..-..+.+.++.
T Consensus 97 d~s~Ak~le~k--~gIpVlRHs~kKP~ct~E~~~y~~ 131 (190)
T KOG2961|consen 97 DDSKAKALEAK--IGIPVLRHSVKKPACTAEEVEYHF 131 (190)
T ss_pred chHHHHHHHHh--hCCceEeecccCCCccHHHHHHHh
Confidence 55556655454 456777655544444566666543
No 229
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=8.2 Score=25.80 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=29.0
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+.|++..||.|......|.++.- +.+.|-|. .+-..+++|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v-----~yd~VeIt---------~Sm~NlKrFl 45 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV-----DYDFVEIT---------ESMANLKRFL 45 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC-----Cceeeehh---------hhhhhHHHHH
Confidence 45889999999988877776533 24455553 3667788887
No 230
>PRK10824 glutaredoxin-4; Provisional
Probab=78.63 E-value=7.2 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.2
Q ss_pred CCEEEEEEcc----CCCCCChHHHHHHHHH
Q 026066 108 GKVLLIVNVA----SRCGLTPSNYSELSHL 133 (244)
Q Consensus 108 Gk~vll~F~a----~~C~~C~~~~~~L~~l 133 (244)
.++|+|+--. +|||+|.....-|+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 3466664433 5999999876666554
No 231
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=78.04 E-value=5.9 Score=28.32 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=25.7
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
++|+| |-.+||+.|... +++..+ .++....+-+|. .....++++++
T Consensus 14 ~~VVi-fSKs~C~~c~~~----k~ll~~---~~v~~~vvELD~-----~~~g~eiq~~l 59 (104)
T KOG1752|consen 14 NPVVI-FSKSSCPYCHRA----KELLSD---LGVNPKVVELDE-----DEDGSEIQKAL 59 (104)
T ss_pred CCEEE-EECCcCchHHHH----HHHHHh---CCCCCEEEEccC-----CCCcHHHHHHH
Confidence 45544 788999999973 333333 334444444443 12344677766
No 232
>PRK12559 transcriptional regulator Spx; Provisional
Probab=77.94 E-value=6.8 Score=29.19 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=32.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
+..|...+|+.|++...-|.+ +|+.+-.+.+. .++-+.+++.+|+ +..+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l-~~~~ 50 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSIL-RLTE 50 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHH-HHcC
Confidence 345668999999987655543 45555555443 2356889999998 5533
No 233
>PRK10026 arsenate reductase; Provisional
Probab=77.56 E-value=28 Score=26.30 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=32.0
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
..|+...|.-|++.+.-|.+. +..++++-+--+ +-+.+++.+|+ +..+.
T Consensus 5 ~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l-~~~g~ 53 (141)
T PRK10026 5 TIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLI-ADMGI 53 (141)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHH-HhCCC
Confidence 346688999999887666542 222444444433 45789999998 55554
No 234
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=76.16 E-value=2.7 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=35.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
|+.|....|+.|......|.++... .++++-.|+++. +++ +. ++|+...|++.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~--------d~~---l~-~~Y~~~IPVl~ 54 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE--------DPE---LF-EKYGYRIPVLH 54 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT--------THH---HH-HHSCTSTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC--------CHH---HH-HHhcCCCCEEE
Confidence 5567789999999877777664433 348888888762 222 44 67887777774
No 235
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=75.04 E-value=7.5 Score=28.98 Aligned_cols=43 Identities=16% Similarity=0.010 Sum_probs=34.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..|+|+|-|.-.|-+.|...-..|.+..++.++- ..|..|.+|
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence 4689999999999999999889999999988764 555556554
No 236
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=74.45 E-value=6.7 Score=31.33 Aligned_cols=41 Identities=7% Similarity=-0.087 Sum_probs=33.6
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
+..-||+.||-..-..|+-.-..|..|..++-+ ..+|-|+.
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEec
Confidence 445788999988888999988999999888854 78888863
No 237
>PTZ00062 glutaredoxin; Provisional
Probab=73.92 E-value=10 Score=30.64 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCCEEEEEEcc----CCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 107 KGKVLLIVNVA----SRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 107 ~Gk~vll~F~a----~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
..++|+|+--+ ++||.|+.....|++ .|+.+..+.++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 34566664443 588888866555553 35666666665
No 238
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=73.39 E-value=23 Score=25.35 Aligned_cols=32 Identities=6% Similarity=-0.136 Sum_probs=22.1
Q ss_pred eeEEEECCCCcEEEe-cCCCCChhhHHHHHhhc
Q 026066 211 FEKFLVDKNGKVIER-YPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~G~i~~~-~~g~~~~~~l~~~l~~~ 242 (244)
|.+.+++-++.-.+. ..+..+++.|.+.++++
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHH
Confidence 777888776533444 44666788888888765
No 239
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=72.61 E-value=10 Score=30.41 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=39.5
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 110 ~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
-.+..|.-..|+.|...+..+.. .+..+.|..|..+ .+++.+..|+ .+++++-..+
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA-~~~~Idp~~V 165 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWA-NRHQIDPAKV 165 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHH-HHcCCCHHHe
Confidence 34555767999999988777733 3445777777543 4789999999 7777765443
No 240
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.91 E-value=12 Score=27.98 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.1
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCc
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEF 175 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (244)
..|..++|+.|++...-|. ++|+.+-.+.+. .++-+.+++.+|+ +..+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~----~~~~s~~eL~~~l-~~~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLG----KEPLTKEEILAIL-TKTENGI 53 (132)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECC----CCCCCHHHHHHHH-HHhCCCH
Confidence 3456899999997654443 345665555543 2355788999998 5555443
No 241
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.76 E-value=20 Score=33.60 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 104 SKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 104 ~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
.++++++.|+.|+...|..|.+...-|+++. .+.++ +.+..+
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~ 403 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAV 403 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEe
Confidence 3456667777888877888875555555544 33333 444333
No 242
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=71.16 E-value=5.7 Score=33.10 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhC
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQ 140 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~ 140 (244)
..||+.+++.-+.|||.|-.+-=.|-....+|++-
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 36899999999999999998877777777777653
No 243
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.01 E-value=23 Score=30.34 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=62.3
Q ss_pred ecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeec
Q 026066 102 PLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKV 181 (244)
Q Consensus 102 ~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~ 181 (244)
.+.+..|+.|||.=-+ -+.=+ ++..+|.++|..++-..++. +..++-.+.+ ++.|.-+-+..|.
T Consensus 32 ~~k~v~g~~vLITGgg--~GlGr-------~ialefa~rg~~~vl~Din~------~~~~etv~~~-~~~g~~~~y~cdi 95 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGG--SGLGR-------LIALEFAKRGAKLVLWDINK------QGNEETVKEI-RKIGEAKAYTCDI 95 (300)
T ss_pred chhhccCCEEEEeCCC--chHHH-------HHHHHHHHhCCeEEEEeccc------cchHHHHHHH-HhcCceeEEEecC
Confidence 4566788888884222 22222 34455566666666666653 3444444444 3324333444322
Q ss_pred CCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 182 DVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 182 d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
. +.+++.+.-+..+.+.| +-.+||+.-|.+-.+..-..+.+++++-+
T Consensus 96 s-~~eei~~~a~~Vk~e~G----------~V~ILVNNAGI~~~~~ll~~~d~ei~k~~ 142 (300)
T KOG1201|consen 96 S-DREEIYRLAKKVKKEVG----------DVDILVNNAGIVTGKKLLDCSDEEIQKTF 142 (300)
T ss_pred C-CHHHHHHHHHHHHHhcC----------CceEEEeccccccCCCccCCCHHHHHHHH
Confidence 2 22334555555666666 66799999998876666666777777744
No 244
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=70.81 E-value=65 Score=27.31 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCcccCeEEEcCCCCeeecCCCC--CCEEEEEEccCCCCCChHHHHH-HHHHHHHHh--hCCcEEEEEecC
Q 026066 85 EKSLYDFTVKDIDGKDVPLSKFK--GKVLLIVNVASRCGLTPSNYSE-LSHLYEKYK--TQGFEILAFPCN 150 (244)
Q Consensus 85 g~~~pdf~l~~~~G~~v~l~~~~--Gk~vll~F~a~~C~~C~~~~~~-L~~l~~~~~--~~~~~vv~vs~d 150 (244)
=+.+|-|.+.|.+|+.+-...-. ++.+.++|+ |+..... |+++..... ..++.|+.|++|
T Consensus 72 L~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 72 LAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp HTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred hcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 34689999999999987666654 577766664 4444433 344444322 356999999865
No 245
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=70.07 E-value=18 Score=25.96 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=43.3
Q ss_pred CeeecCCCCC-CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCC---CCCCHHHHHHHHHhhcC
Q 026066 99 KDVPLSKFKG-KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQ---EPGSNPEIKEFACTRFK 172 (244)
Q Consensus 99 ~~v~l~~~~G-k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~---~~~~~~~~~~~~~~~~~ 172 (244)
+.-..++|.+ .+-||-|+ .|+.|. -..+....+++.+.|+++|-++.=-..+. .=...+++.+.++++++
T Consensus 26 r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~g 99 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFG 99 (107)
T ss_pred ccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhC
Confidence 3345667765 56777774 477777 56677777788888899888774211111 11235677777755544
No 246
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.59 E-value=1.3 Score=36.52 Aligned_cols=27 Identities=4% Similarity=-0.058 Sum_probs=20.5
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHH
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYE 135 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~ 135 (244)
+...+.|...+|+.|......+...++
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 456666779999999988777766655
No 247
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=68.33 E-value=2.6 Score=28.48 Aligned_cols=31 Identities=26% Similarity=0.228 Sum_probs=20.5
Q ss_pred eeEEEECCCCcEEEec-CCCCChhhHHHHHhh
Q 026066 211 FEKFLVDKNGKVIERY-PPTTSPFQIEVHFLL 241 (244)
Q Consensus 211 P~~~lID~~G~i~~~~-~g~~~~~~l~~~l~~ 241 (244)
|...++|.+|+++.+. ....+.+++++.|..
T Consensus 43 P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 43 PELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp -EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 9999999999987665 344577888888865
No 248
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=67.85 E-value=70 Score=26.54 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 132 ~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
+..++++++|+.|+-.+ ..+...+.+++ ++.++..+++
T Consensus 26 ~ai~~l~~~G~~~~iaT--------GR~~~~~~~~~-~~l~~~~~~I 63 (272)
T PRK15126 26 STLARLRERDITLTFAT--------GRHVLEMQHIL-GALSLDAYLI 63 (272)
T ss_pred HHHHHHHHCCCEEEEEC--------CCCHHHHHHHH-HHcCCCCcEE
Confidence 33444566788887776 23556677776 6666665544
No 249
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=66.14 E-value=38 Score=22.94 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEE
Q 026066 108 GKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILA 146 (244)
Q Consensus 108 Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~ 146 (244)
.+++||-|+..+|. .+...+.+..+.+++. +.+..
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~-~~F~~ 51 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDD-YGFGH 51 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcccC-CeEEE
Confidence 45777777777766 4556666776666553 44433
No 250
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=65.02 E-value=28 Score=27.04 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=44.0
Q ss_pred hhhhccCCcccCeEEEc-CCCCeeecCCC---CCCEEEEEEccCC-CCCChHHHHHHHHH-------HHHHhhCC-----
Q 026066 79 HATAATEKSLYDFTVKD-IDGKDVPLSKF---KGKVLLIVNVASR-CGLTPSNYSELSHL-------YEKYKTQG----- 141 (244)
Q Consensus 79 ~~~~~~g~~~pdf~l~~-~~G~~v~l~~~---~Gk~vll~F~a~~-C~~C~~~~~~L~~l-------~~~~~~~~----- 141 (244)
...+.+|..+|+..+.. .||+++.|.+. .|++-|+.|-+.. .+.+...+..|.+. ..+|...+
T Consensus 27 a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s 106 (169)
T PF07976_consen 27 AGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDS 106 (169)
T ss_dssp BTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTS
T ss_pred ccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCC
Confidence 35677999999999987 59999999874 6899888887543 34444455555443 33554422
Q ss_pred -cEEEEEecC
Q 026066 142 -FEILAFPCN 150 (244)
Q Consensus 142 -~~vv~vs~d 150 (244)
++++.|...
T Consensus 107 ~~~~~~I~~~ 116 (169)
T PF07976_consen 107 VFDVLLIHSS 116 (169)
T ss_dssp SEEEEEEESS
T ss_pred eeEEEEEecC
Confidence 788888743
No 251
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=64.22 E-value=8.4 Score=29.02 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=22.4
Q ss_pred cccceeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 207 i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|.++|+++| ||+.+ .+..+.+++.+.|++
T Consensus 134 i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 134 ITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp -SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred CccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 677798777 89885 456689999999875
No 252
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=62.20 E-value=81 Score=27.25 Aligned_cols=24 Identities=13% Similarity=-0.042 Sum_probs=16.0
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
...+++|.|+.. +++.+.+.++.+
T Consensus 92 d~vv~~DaD~q~--------~p~~i~~l~~~~ 115 (325)
T PRK10714 92 DLIITLDADLQN--------PPEEIPRLVAKA 115 (325)
T ss_pred CEEEEECCCCCC--------CHHHHHHHHHHH
Confidence 567888888764 566666666543
No 253
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=62.04 E-value=89 Score=25.70 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..++++++|+.|+-.+ -.....+..++ +++++..+++
T Consensus 26 ~~ai~~~~~~G~~~~iaT--------GR~~~~~~~~~-~~l~~~~~~I 64 (272)
T PRK10530 26 LEALARAREAGYKVIIVT--------GRHHVAIHPFY-QALALDTPAI 64 (272)
T ss_pred HHHHHHHHHCCCEEEEEc--------CCChHHHHHHH-HhcCCCCCEE
Confidence 344455666788777665 12445566666 6666655444
No 254
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=61.88 E-value=68 Score=30.64 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=35.9
Q ss_pred hhhccCCcccCeEEEcC-CCCeeecCC-C--CCCEEEEEEccCC-CCCChHHHHHHH
Q 026066 80 ATAATEKSLYDFTVKDI-DGKDVPLSK-F--KGKVLLIVNVASR-CGLTPSNYSELS 131 (244)
Q Consensus 80 ~~~~~g~~~pdf~l~~~-~G~~v~l~~-~--~Gk~vll~F~a~~-C~~C~~~~~~L~ 131 (244)
..+.+|..+|++.+... +++++.|.+ + .|++.|+.|-... .+.....+..+.
T Consensus 461 ~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~ 517 (634)
T PRK08294 461 TGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALC 517 (634)
T ss_pred cCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHH
Confidence 45679999999999885 788877764 3 5789999886532 234444444443
No 255
>PRK10976 putative hydrolase; Provisional
Probab=61.28 E-value=92 Score=25.64 Aligned_cols=39 Identities=3% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..++++++|+.|+-.+ -.....+..++ ++.++..+++
T Consensus 25 ~~ai~~l~~~G~~~~iaT--------GR~~~~~~~~~-~~l~~~~~~I 63 (266)
T PRK10976 25 KETLKLLTARGIHFVFAT--------GRHHVDVGQIR-DNLEIKSYMI 63 (266)
T ss_pred HHHHHHHHHCCCEEEEEc--------CCChHHHHHHH-HhcCCCCeEE
Confidence 344455566788887776 22455666666 6666654443
No 256
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=61.28 E-value=7.9 Score=33.64 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=29.3
Q ss_pred ccceeEEEECC-CCcEEEecCCCCChhhHHHHHhhc
Q 026066 208 KWNFEKFLVDK-NGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 208 ~~~P~~~lID~-~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
...|.+.+||+ .|+-+.++.|...++++.++++++
T Consensus 153 ~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~F 188 (356)
T KOG1364|consen 153 SSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEF 188 (356)
T ss_pred cCCceEEEECCchhhhhhhhccccCHHHHHHHHHHH
Confidence 33499999998 788889998988899998888765
No 257
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=60.40 E-value=49 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=24.7
Q ss_pred cCCCC--CCh----HHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 117 ASRCG--LTP----SNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 117 a~~C~--~C~----~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+-.|. .|- .++-.+....+.++++|++|.-.++.
T Consensus 10 amCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~ 49 (123)
T PF06953_consen 10 AMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLA 49 (123)
T ss_dssp S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETT
T ss_pred ccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccc
Confidence 55563 563 57788888899999999999998876
No 258
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=60.01 E-value=16 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
+|-||+|..|...-|.|......|+.+.-+|.. +.+|-|.
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~ 149 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIP 149 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecc
Confidence 467999999999999999999999999999986 6777765
No 259
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=59.87 E-value=18 Score=32.57 Aligned_cols=32 Identities=6% Similarity=0.118 Sum_probs=22.8
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|+.|..+|||.|......|++ +|+..-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 556889999999976555554 46666666665
No 260
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=58.45 E-value=97 Score=24.98 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=26.9
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCC
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQF 152 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~ 152 (244)
.|.+-.|..|+..-..|.++.++ .++..++..+|.+
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYW 39 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYW 39 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT
T ss_pred EecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcc
Confidence 35688999999999999999887 3699999999865
No 261
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=57.81 E-value=22 Score=25.24 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=21.3
Q ss_pred EccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 115 NVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 115 F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
||-.+||.|......+.++- ....++++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEEC
Confidence 67789999999887777661 1123777766
No 262
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=55.19 E-value=78 Score=29.42 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=26.4
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCC-CEEEEEEcc
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVNVA 117 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~G-k~vll~F~a 117 (244)
...|..+|+..+. .+|+.+.|.|+-| +++||.|-.
T Consensus 427 ~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~~~ 462 (547)
T PRK08132 427 PVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLFGD 462 (547)
T ss_pred CCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEecC
Confidence 4579999999887 4677778888755 588887753
No 263
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=54.95 E-value=12 Score=28.14 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=28.1
Q ss_pred EEEccCCCCCChH-------HHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 113 IVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 113 l~F~a~~C~~C~~-------~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|.|-++.|..|.. .-..++++.++|...++.||.=+.|
T Consensus 33 vvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 33 VVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred EEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 4588999999973 3457788899998888766655433
No 264
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=54.66 E-value=23 Score=25.48 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=17.0
Q ss_pred eeEEEECCCCcEEEecCCCCChhh
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQ 234 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~ 234 (244)
|+++++ ++|+.+....|..+.++
T Consensus 84 PaLvf~-R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 84 PALVFF-RDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp SEEEEE-ETTEEEEEEESSSTHHH
T ss_pred CeEEEE-ECCEEEEEecCeecccc
Confidence 777777 88988888777666543
No 265
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.58 E-value=1.1e+02 Score=26.81 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=58.8
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP 186 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~ 186 (244)
.+||.++.|.+..=-.=. ..+.++...|+++|..|+....|.| .....+.++.|. ++.+ .+++.. ....+
T Consensus 136 ~~~p~Vil~vGVNG~GKT---TTIaKLA~~l~~~g~~VllaA~DTF---RAaAiEQL~~w~-er~g--v~vI~~-~~G~D 205 (340)
T COG0552 136 EKKPFVILFVGVNGVGKT---TTIAKLAKYLKQQGKSVLLAAGDTF---RAAAIEQLEVWG-ERLG--VPVISG-KEGAD 205 (340)
T ss_pred CCCcEEEEEEecCCCchH---hHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHH-HHhC--CeEEcc-CCCCC
Confidence 457888878755422222 3366777778888999999988854 223346677787 6644 556642 22333
Q ss_pred CcchhhHhhhhc-cCCCcCCccccceeEEEECCCCcEE
Q 026066 187 NTAPVYQFLKSS-AGGFLGDLVKWNFEKFLVDKNGKVI 223 (244)
Q Consensus 187 ~~~~~~~~l~~~-~~~~~~~~i~~~P~~~lID~~G~i~ 223 (244)
-.+-.|+.+... ..+ --.+|||--|++.
T Consensus 206 pAaVafDAi~~Akar~---------~DvvliDTAGRLh 234 (340)
T COG0552 206 PAAVAFDAIQAAKARG---------IDVVLIDTAGRLH 234 (340)
T ss_pred cHHHHHHHHHHHHHcC---------CCEEEEeCccccc
Confidence 344566654321 111 3369999999974
No 266
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=53.42 E-value=38 Score=26.47 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred CEEEEEEccCCCC-CChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 109 KVLLIVNVASRCG-LTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 109 k~vll~F~a~~C~-~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
|-+++++=.|=-+ .-....|++.++.++.++.|+.++-+|-+ +...+..++ ++++++|-.
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~-~~l~v~fi~ 89 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAA-EKLGVPFIY 89 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhh-hhcCCceee
Confidence 4677777544323 23345688999999999999999988843 677888887 777776644
No 267
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=52.48 E-value=18 Score=28.18 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=29.3
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
|.+|+..-||.|-...+.|.++.+++.+-.++..-+.+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 567778899999999999999999994433444444443
No 268
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=50.93 E-value=1.3e+02 Score=24.27 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=8.5
Q ss_pred eeEEEECCCCcE
Q 026066 211 FEKFLVDKNGKV 222 (244)
Q Consensus 211 P~~~lID~~G~i 222 (244)
..++++|.|+.+
T Consensus 95 ~~i~~lD~D~~~ 106 (243)
T PLN02726 95 DFVVIMDADLSH 106 (243)
T ss_pred CEEEEEcCCCCC
Confidence 567888888653
No 269
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=50.27 E-value=20 Score=27.94 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEE
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEIL 145 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv 145 (244)
|.+|+-..||.|-...+.|.++.++|+ .+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 446668899999999999999999984 234443
No 270
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=49.79 E-value=1.2e+02 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=17.8
Q ss_pred eEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 212 EKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 212 ~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
.-++.|++| -+.-..+.+++++.|+
T Consensus 134 ~gV~l~~~g----C~~T~Vd~~~v~~~i~ 158 (158)
T PF01976_consen 134 QGVLLDRPG----CINTDVDWEKVEEAIQ 158 (158)
T ss_pred eEEEeCCCC----cCCCcccHHHHHHHhC
Confidence 347888888 4556668888888764
No 271
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=48.53 E-value=1.5e+02 Score=24.22 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..+++.++|..++..+= .+...+.+.+ ++.++..+++
T Consensus 22 ~~~i~~l~~~G~~~~iaTG--------R~~~~~~~~~-~~~~~~~~~I 60 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATG--------RPYKEVKNIL-KELGLDTPFI 60 (256)
T ss_pred HHHHHHHHHCCCeEEEEeC--------CCHHHHHHHH-HHcCCCCCEE
Confidence 3444555667888887762 2456666666 6666654444
No 272
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=48.40 E-value=79 Score=26.39 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=54.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcc
Q 026066 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTA 189 (244)
Q Consensus 110 ~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~ 189 (244)
-+|| +-+..|+=. .-++.+..+|.++|+.+|-|.-++ -.+-.++.+.+ ......|-++.| |..-+.-.
T Consensus 54 nvLL-~G~rGtGKS----SlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l-~~~~~kFIlf~D-DLsFe~~d 121 (249)
T PF05673_consen 54 NVLL-WGARGTGKS----SLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLL-RDRPYKFILFCD-DLSFEEGD 121 (249)
T ss_pred ceEE-ecCCCCCHH----HHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHH-hcCCCCEEEEec-CCCCCCCc
Confidence 3444 335556532 224567788899999999997553 23455666666 444556666643 44434445
Q ss_pred hhhHhhhhccCCCcCCccccceeEEEECCCC
Q 026066 190 PVYQFLKSSAGGFLGDLVKWNFEKFLVDKNG 220 (244)
Q Consensus 190 ~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G 220 (244)
..|+.++.-..|. +..-|..++|-..-
T Consensus 122 ~~yk~LKs~LeGg----le~~P~NvliyATS 148 (249)
T PF05673_consen 122 TEYKALKSVLEGG----LEARPDNVLIYATS 148 (249)
T ss_pred HHHHHHHHHhcCc----cccCCCcEEEEEec
Confidence 6777777643322 33337666664433
No 273
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=48.11 E-value=28 Score=21.02 Aligned_cols=32 Identities=25% Similarity=0.119 Sum_probs=22.9
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
....|.+.||+|+..-.+..+...-++.|+..
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESV 37 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 55678999999999877777777777766654
No 274
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=47.86 E-value=18 Score=27.15 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=26.4
Q ss_pred EEEccCCCCCChH-------HHHHHHHHHHHHhhCCcEEEEEe
Q 026066 113 IVNVASRCGLTPS-------NYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 113 l~F~a~~C~~C~~-------~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
|.|-+|-|..|.. .-..++++.++|...++.||.=.
T Consensus 34 vvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 34 VVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred EEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 5588999999973 34567788889988876655443
No 275
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=47.78 E-value=52 Score=23.66 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=31.7
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|....|..|++...-|.+ +|+.+..+.+- ..+-+.+++.+++ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~p~t~~el~~~l-~~~g~ 50 (114)
T TIGR00014 3 IYHNPRCSKSRNTLALLED-------KGIEPEVVKYL----KNPPTKSELEAIF-AKLGL 50 (114)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----CCCcCHHHHHHHH-HHcCC
Confidence 4668899999987666654 34554444432 2355888999998 55554
No 276
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=45.23 E-value=41 Score=24.23 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCC---CCCCCHHHHHHHHHhhcCC
Q 026066 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGG---QEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 119 ~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~---~~~~~~~~~~~~~~~~~~~ 173 (244)
.|+.-...+..|+..+++| |+++++++.|.+.. ..+.+.++..+++.+.|..
T Consensus 25 ~~~~~~~~~a~lr~W~er~---ga~i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y~f 79 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERY---GAEIVGIGFDTLELSVARPPQTPEEAEALAAEHYAF 79 (111)
T ss_pred CCCCHHHHHHHHHHHHHHh---CEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3565666777777777777 57888887765443 3344558888888665443
No 277
>PRK12359 flavodoxin FldB; Provisional
Probab=44.30 E-value=83 Score=24.59 Aligned_cols=14 Identities=14% Similarity=-0.187 Sum_probs=8.0
Q ss_pred CChhhHHHHHhhcc
Q 026066 230 TSPFQIEVHFLLSR 243 (244)
Q Consensus 230 ~~~~~l~~~l~~~~ 243 (244)
.+.+.++++++.+|
T Consensus 152 ~t~~ri~~W~~~~~ 165 (172)
T PRK12359 152 LSDERIQQWCEQIL 165 (172)
T ss_pred hhHHHHHHHHHHHH
Confidence 35566666666543
No 278
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=43.65 E-value=58 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.084 Sum_probs=20.8
Q ss_pred eeEEEECCCCcEEEecCC-CCChhhHHHHHhh
Q 026066 211 FEKFLVDKNGKVIERYPP-TTSPFQIEVHFLL 241 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g-~~~~~~l~~~l~~ 241 (244)
|...+.|.||++.....- .-+-+.+++.++.
T Consensus 118 P~l~llDadgk~kE~lsI~kWntdtl~eff~e 149 (154)
T KOG3384|consen 118 PVLKLLDADGKHKESLSIDKWNTDTLEEFFRE 149 (154)
T ss_pred CeeEeecCCCCccceeeecccChHHHHHHHHH
Confidence 889999999998764422 2245566665543
No 279
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=43.27 E-value=1.3e+02 Score=22.19 Aligned_cols=32 Identities=6% Similarity=-0.043 Sum_probs=17.8
Q ss_pred eeEEEECCC--CcEEEecCCCCChhhHHHHHhhc
Q 026066 211 FEKFLVDKN--GKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~--G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
|.++|+-.+ .-|.+...|..+.+.|+..++..
T Consensus 85 Pv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 85 PVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 555555433 33444447777888888888753
No 280
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.15 E-value=1.1e+02 Score=21.15 Aligned_cols=19 Identities=11% Similarity=0.274 Sum_probs=15.8
Q ss_pred eEEEECCCCcEEEecCCCC
Q 026066 212 EKFLVDKNGKVIERYPPTT 230 (244)
Q Consensus 212 ~~~lID~~G~i~~~~~g~~ 230 (244)
..++.|++|+++..+.|..
T Consensus 93 ~~~~~DP~Gn~iel~~~~~ 111 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAEK 111 (112)
T ss_pred EEEEECCCCCEEEEecCCC
Confidence 4689999999999887753
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.63 E-value=72 Score=22.97 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=30.4
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK 172 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~ 172 (244)
..|..+.|..|++...-|.+. +..++++-+--+ +-+.+++.+|+ +..+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~------p~s~~eL~~~l-~~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE------PWTAETLRPFF-GDLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC------CCCHHHHHHHH-HHcC
Confidence 346688999999776555432 222455555433 45789999998 4544
No 282
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=42.00 E-value=64 Score=24.46 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=28.3
Q ss_pred CCCCCCEEEE-EEccCCCCCChHHHHHHHHHHHHHhhCCcE-EEEEecC
Q 026066 104 SKFKGKVLLI-VNVASRCGLTPSNYSELSHLYEKYKTQGFE-ILAFPCN 150 (244)
Q Consensus 104 ~~~~Gk~vll-~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~-vv~vs~d 150 (244)
.+||||++++ -|...--..-......|+++.+++++.|+. |+.|++|
T Consensus 46 rqfKGRv~l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 46 RQFKGRVLLFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred HhcCceEEecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 3578987766 222222122233334788888899888865 5666665
No 283
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=41.54 E-value=84 Score=22.96 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=18.7
Q ss_pred eeEEEECCCCcEEEecCCCCChh
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPF 233 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~ 233 (244)
...++.|++|+++....|...+.
T Consensus 102 ~~~~~~DPdGn~iEl~~~~~~~~ 124 (139)
T PRK04101 102 KSIYFTDPDGHKFEFHTGTLQDR 124 (139)
T ss_pred eEEEEECCCCCEEEEEeCCHHHH
Confidence 56799999999999988876443
No 284
>PRK10853 putative reductase; Provisional
Probab=41.42 E-value=58 Score=23.69 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=31.7
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
..|....|..|++.+.-|.+ +|+.+..+..- ..+-+.+++.+|+ ++.|+
T Consensus 3 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~----k~p~s~~eL~~~l-~~~g~ 51 (118)
T PRK10853 3 TLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYR----VDGLDSELLQGFI-DELGW 51 (118)
T ss_pred EEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehc----cCCcCHHHHHHHH-HHcCH
Confidence 34568899999987666654 34544444432 2345789999998 56553
No 285
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.01 E-value=45 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.1
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.+.||...|+.-...+.++.+|....++.|+.|+.-.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3456677777777788889999999999999888754
No 286
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=40.36 E-value=1.1e+02 Score=25.74 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=43.7
Q ss_pred HHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCC-CcchhhHhhhhccCCCcCCccccc
Q 026066 132 HLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGP-NTAPVYQFLKSSAGGFLGDLVKWN 210 (244)
Q Consensus 132 ~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ 210 (244)
++.+++.++|..+|.|.-+ .+.-+++.+-+.++++..-.++. .|.... ...+++..+....+
T Consensus 21 ~~A~~lA~~g~~liLvaR~------~~kL~~la~~l~~~~~v~v~vi~-~DLs~~~~~~~l~~~l~~~~~---------- 83 (265)
T COG0300 21 ELAKQLARRGYNLILVARR------EDKLEALAKELEDKTGVEVEVIP-ADLSDPEALERLEDELKERGG---------- 83 (265)
T ss_pred HHHHHHHHCCCEEEEEeCc------HHHHHHHHHHHHHhhCceEEEEE-CcCCChhHHHHHHHHHHhcCC----------
Confidence 4455666677788877643 12233444444344444433332 333322 23444444443222
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHH
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHF 239 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l 239 (244)
+-.+||+.-|-=.+.-.-..+.++.++.+
T Consensus 84 ~IdvLVNNAG~g~~g~f~~~~~~~~~~mi 112 (265)
T COG0300 84 PIDVLVNNAGFGTFGPFLELSLDEEEEMI 112 (265)
T ss_pred cccEEEECCCcCCccchhhCChHHHHHHH
Confidence 44678888776544322333445554443
No 287
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=37.67 E-value=30 Score=22.34 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.2
Q ss_pred hhccCCcccCeEEEcCCCCeeecCC
Q 026066 81 TAATEKSLYDFTVKDIDGKDVPLSK 105 (244)
Q Consensus 81 ~~~~g~~~pdf~l~~~~G~~v~l~~ 105 (244)
.-.+|+++.+++++|..|+.++++.
T Consensus 29 sgNvgQP~ENWElkDe~G~vlD~~k 53 (76)
T PF10790_consen 29 SGNVGQPPENWELKDESGQVLDVNK 53 (76)
T ss_pred ccccCCCcccceeeccCCcEeeccc
Confidence 3458899999999999999888765
No 288
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=37.52 E-value=36 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.029 Sum_probs=21.1
Q ss_pred cccceeEEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 207 VKWNFEKFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 207 i~~~P~~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
|..+|+++| +|+ +...|....+++++.|+
T Consensus 165 v~GvP~~vv---~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 165 VFGVPTFVV---NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp CSSSSEEEE---TTT--EEEESCSSHHHHHHHH-
T ss_pred CcccCEEEE---CCE--EEEECCCCHHHHHHHhC
Confidence 555698777 666 56668878889988874
No 289
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=37.35 E-value=46 Score=22.28 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=18.3
Q ss_pred EEEECCCCcEEEecCC-----CCChhhHHHHHhh
Q 026066 213 KFLVDKNGKVIERYPP-----TTSPFQIEVHFLL 241 (244)
Q Consensus 213 ~~lID~~G~i~~~~~g-----~~~~~~l~~~l~~ 241 (244)
.+.||++|.|..-+.| ..+.+++++.|++
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~ 65 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQ 65 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHH
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHH
Confidence 4889999999865544 4577787777754
No 290
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=36.93 E-value=95 Score=22.15 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=30.6
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.|....|..|++.+.-|++ +|+.+..+.+- ..+-+.+++.+|+ +..+.
T Consensus 3 iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~----~~~~t~~el~~~l-~~~~~ 50 (112)
T cd03034 3 IYHNPRCSKSRNALALLEE-------AGIEPEIVEYL----KTPPTAAELRELL-AKLGI 50 (112)
T ss_pred EEECCCCHHHHHHHHHHHH-------CCCCeEEEecc----cCCcCHHHHHHHH-HHcCC
Confidence 4668899999987655543 34444444432 2345788999998 55553
No 291
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=36.14 E-value=1.4e+02 Score=21.29 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcC
Q 026066 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLG 204 (244)
Q Consensus 125 ~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~ 204 (244)
....-|++-.+++++.+..-+-|+++ +.+.+.+.. +- --..++. -..|++.++.++
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~--------t~~~l~~Lr-~l-apgl~l~---P~sgddLa~rL~----------- 90 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVE--------TAAALQRLR-AL-APGLPLL---PVSGDDLAERLG----------- 90 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHH-HH-cCCCccc---CCCHHHHHHHhC-----------
Confidence 34456777888888877777777775 566655543 21 1122332 224444444443
Q ss_pred CccccceeEEEECCCC
Q 026066 205 DLVKWNFEKFLVDKNG 220 (244)
Q Consensus 205 ~~i~~~P~~~lID~~G 220 (244)
+.++| ++|..+|
T Consensus 91 --l~hYP--vLit~tg 102 (105)
T TIGR03765 91 --LRHYP--VLITATG 102 (105)
T ss_pred --CCccc--EEEecCc
Confidence 55556 6777777
No 292
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=36.02 E-value=1.8e+02 Score=22.70 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=42.8
Q ss_pred cccCeEEEcCCCCeeec--CCCCC-CEEEEEEccCCCCCCh-HHHHHHHHHHHHHhhCCc--EEEEEecCCCCCCCCCCH
Q 026066 87 SLYDFTVKDIDGKDVPL--SKFKG-KVLLIVNVASRCGLTP-SNYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPGSN 160 (244)
Q Consensus 87 ~~pdf~l~~~~G~~v~l--~~~~G-k~vll~F~a~~C~~C~-~~~~~L~~l~~~~~~~~~--~vv~vs~d~~~~~~~~~~ 160 (244)
-.|++.++++..=++.. -.-.| |.+++++=.+-+++=. ..-+++.+..++.++.+. .|+-||-+ .|..++-+.
T Consensus 17 ~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs-aGs~~d~~~ 95 (168)
T PF09419_consen 17 LLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNS-AGSSDDPDG 95 (168)
T ss_pred cCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECC-CCcccCccH
Confidence 35777777765433332 11244 6788888655554322 233555555555554433 35555522 122221123
Q ss_pred HHHHHHHHhhcCCCccee
Q 026066 161 PEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 161 ~~~~~~~~~~~~~~~p~l 178 (244)
++++.+. +..+ .|++
T Consensus 96 ~~a~~~~-~~lg--Ipvl 110 (168)
T PF09419_consen 96 ERAEALE-KALG--IPVL 110 (168)
T ss_pred HHHHHHH-HhhC--CcEE
Confidence 4444443 5555 4544
No 293
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.87 E-value=1.5e+02 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=24.6
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhh-CCcEEEE
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKT-QGFEILA 146 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~-~~~~vv~ 146 (244)
+|+-.-||.|-...+.|.++.++++. .+++|..
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~ 36 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEW 36 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 34567899999999999999999953 1355543
No 294
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=35.71 E-value=64 Score=19.47 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.0
Q ss_pred EEEECCCCcEEEecCCCCC
Q 026066 213 KFLVDKNGKVIERYPPTTS 231 (244)
Q Consensus 213 ~~lID~~G~i~~~~~g~~~ 231 (244)
.|.|++||+|...-.|..-
T Consensus 2 ~~~I~~dG~V~~~v~G~~G 20 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKG 20 (48)
T ss_pred EEEECCCcEEEEEEEeccC
Confidence 3789999999987776553
No 295
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=35.68 E-value=1.1e+02 Score=23.18 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCc
Q 026066 124 PSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFL 203 (244)
Q Consensus 124 ~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~ 203 (244)
..-..-|++-.+++++.+..-+.|+++ +.+.+++..+-.-+ .+++ -..|+++++.++
T Consensus 72 ~~S~~WL~~~~~~L~~l~AvGlVVNV~--------t~~~L~~Lr~lapg--l~l~---P~sgddLA~rL~---------- 128 (142)
T PF11072_consen 72 PLSRQWLQQNAEELKQLGAVGLVVNVA--------TEAALQRLRQLAPG--LPLL---PVSGDDLARRLG---------- 128 (142)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecC--------CHHHHHHHHHHcCC--Ceec---CCCHHHHHHHhC----------
Confidence 344566788888888888777778776 56666655311112 2222 234454555444
Q ss_pred CCccccceeEEEECCCCc
Q 026066 204 GDLVKWNFEKFLVDKNGK 221 (244)
Q Consensus 204 ~~~i~~~P~~~lID~~G~ 221 (244)
+.|+| +||..+|.
T Consensus 129 ---l~HYP--vLIt~~gi 141 (142)
T PF11072_consen 129 ---LSHYP--VLITATGI 141 (142)
T ss_pred ---CCccc--EEeecCCc
Confidence 56667 67777663
No 296
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=35.64 E-value=1.3e+02 Score=22.79 Aligned_cols=25 Identities=4% Similarity=-0.213 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhCCcEEEEEecC
Q 026066 119 RCGLTPSNYSELSHLYEKYKTQGFEILAFPCN 150 (244)
Q Consensus 119 ~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d 150 (244)
+|+.|......|++ .++.+--++++
T Consensus 15 t~~~C~~ak~iL~~-------~~V~~~e~DVs 39 (147)
T cd03031 15 TFEDCNNVRAILES-------FRVKFDERDVS 39 (147)
T ss_pred cChhHHHHHHHHHH-------CCCcEEEEECC
Confidence 89999866555543 34665556554
No 297
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=35.08 E-value=1.2e+02 Score=20.53 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=10.4
Q ss_pred eeEEEECCCCcEEEe
Q 026066 211 FEKFLVDKNGKVIER 225 (244)
Q Consensus 211 P~~~lID~~G~i~~~ 225 (244)
...++.|++|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 568999999998753
No 298
>PF08918 PhoQ_Sensor: PhoQ Sensor; InterPro: IPR015014 The PhoQ Sensor is required for the virulence of various Gram-negative bacteria by allowing interaction of PhoPQ with the intracellular membrane, resulting in remodelling of the bacterial cell surface and subsequent bacterial resistance to host antimicrobial peptides. The domain contains a major flat acidic surface, which binds to at least 3 calcium ions, neutralising the domain's negative charge and allowing interaction with the negatively charged membrane []. ; GO: 0004673 protein histidine kinase activity, 0005524 ATP binding, 0046872 metal ion binding, 0000160 two-component signal transduction system (phosphorelay), 0018106 peptidyl-histidine phosphorylation, 0016020 membrane; PDB: 1YAX_D 3BQA_B 3BQ8_B.
Probab=34.93 E-value=23 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=15.5
Q ss_pred EEEECCCCcEEEecCCCCChhhHHHHHh
Q 026066 213 KFLVDKNGKVIERYPPTTSPFQIEVHFL 240 (244)
Q Consensus 213 ~~lID~~G~i~~~~~g~~~~~~l~~~l~ 240 (244)
.+|.|++|+++++... ..++++.|+
T Consensus 77 ~~IYD~~G~lLW~qr~---vP~l~~~I~ 101 (180)
T PF08918_consen 77 VLIYDENGKLLWRQRD---VPELEKRIQ 101 (180)
T ss_dssp EEEEETTS-EEEESS-----HHHHCCS-
T ss_pred EEEEcCCCcEEEecCc---cHHHHHhcC
Confidence 5889999999998763 333554443
No 299
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=34.65 E-value=1.9e+02 Score=23.98 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhCCcEEEEEecCC
Q 026066 127 YSELSHLYEKYKTQGFEILAFPCNQ 151 (244)
Q Consensus 127 ~~~L~~l~~~~~~~~~~vv~vs~d~ 151 (244)
...|.++..+..+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4556778888999999999999995
No 300
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.37 E-value=1.5e+02 Score=20.31 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=12.0
Q ss_pred eEEEECCCCcEEEec
Q 026066 212 EKFLVDKNGKVIERY 226 (244)
Q Consensus 212 ~~~lID~~G~i~~~~ 226 (244)
..++.|++|.++..+
T Consensus 110 ~~~~~DP~G~~iEl~ 124 (125)
T cd08352 110 FTFFYDPDGLPLELY 124 (125)
T ss_pred EEEEECCCCCEEEec
Confidence 468999999988654
No 301
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=34.16 E-value=1.8e+02 Score=20.97 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=12.7
Q ss_pred eeEEEECCCCcEEEec
Q 026066 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~i~~~~ 226 (244)
...|+-||+|.++...
T Consensus 124 r~~~~~DPdG~~iEl~ 139 (142)
T cd08353 124 RLCYIRGPEGILIELA 139 (142)
T ss_pred EEEEEECCCCCEEEee
Confidence 5578999999987643
No 302
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=34.00 E-value=1.4e+02 Score=25.78 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=51.2
Q ss_pred eeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 026066 100 DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 100 ~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
+.++.+..|+|.+|. -++ -+.-+ +...++..+|+.|+-|+-++ +.-+.+++-+.++++..-.++.
T Consensus 41 ~~~~~~~~g~WAVVT-GaT-DGIGK-------ayA~eLAkrG~nvvLIsRt~------~KL~~v~kEI~~~~~vev~~i~ 105 (312)
T KOG1014|consen 41 PKDLKEKLGSWAVVT-GAT-DGIGK-------AYARELAKRGFNVVLISRTQ------EKLEAVAKEIEEKYKVEVRIIA 105 (312)
T ss_pred ecchHHhcCCEEEEE-CCC-CcchH-------HHHHHHHHcCCEEEEEeCCH------HHHHHHHHHHHHHhCcEEEEEE
Confidence 344555556777763 222 23333 33445556899999998552 3344555555566665544433
Q ss_pred ecCCCCCCcchhhHhhhhccCCCcCCccccceeEEEECCCCc
Q 026066 180 KVDVNGPNTAPVYQFLKSSAGGFLGDLVKWNFEKFLVDKNGK 221 (244)
Q Consensus 180 d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lID~~G~ 221 (244)
.|...... .|..+.....+ .+--+||+.=|.
T Consensus 106 -~Dft~~~~--~ye~i~~~l~~--------~~VgILVNNvG~ 136 (312)
T KOG1014|consen 106 -IDFTKGDE--VYEKLLEKLAG--------LDVGILVNNVGM 136 (312)
T ss_pred -EecCCCch--hHHHHHHHhcC--------CceEEEEecccc
Confidence 45554432 45554443222 255677766554
No 303
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=33.98 E-value=2.3e+02 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=14.1
Q ss_pred CChHHHH-HHHHHHHHHhhCC---cEEEEEe
Q 026066 122 LTPSNYS-ELSHLYEKYKTQG---FEILAFP 148 (244)
Q Consensus 122 ~C~~~~~-~L~~l~~~~~~~~---~~vv~vs 148 (244)
+|..|-+ .+.+..+...+++ .+|+.|.
T Consensus 61 P~ynE~~~~~~~~l~s~~~~dyp~~evivv~ 91 (439)
T COG1215 61 PAYNEEPEVLEETLESLLSQDYPRYEVIVVD 91 (439)
T ss_pred ecCCCchhhHHHHHHHHHhCCCCCceEEEEC
Confidence 3444444 5555554444443 5777765
No 304
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=33.76 E-value=2.7e+02 Score=22.83 Aligned_cols=60 Identities=8% Similarity=0.128 Sum_probs=36.6
Q ss_pred EEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 110 VLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 110 ~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.++++.=+|-...=...-+...+..++.+++|+.++-++= .+...+.+++ ++.++..+++
T Consensus 5 li~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTG--------R~~~~~~~~~-~~l~~~~~~I 64 (264)
T COG0561 5 LLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATG--------RPLPDVLSIL-EELGLDGPLI 64 (264)
T ss_pred EEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECC--------CChHHHHHHH-HHcCCCccEE
Confidence 3344444555443333445566666677888999888862 2456777776 6666665555
No 305
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=33.61 E-value=3.9e+02 Score=24.73 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=25.9
Q ss_pred hccCCcccCeEEEcCCCCeeecCCCCC-CEEEEEE
Q 026066 82 AATEKSLYDFTVKDIDGKDVPLSKFKG-KVLLIVN 115 (244)
Q Consensus 82 ~~~g~~~pdf~l~~~~G~~v~l~~~~G-k~vll~F 115 (244)
..+|..+|+..+.+.+|...-++++.| .++||.|
T Consensus 411 ~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 411 SPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCcccCcCCCeeEcCCCCcccchhccCCceEEEEe
Confidence 458999999998877665555677766 5888877
No 306
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=32.94 E-value=1.5e+02 Score=24.96 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhHhhhhccCCCcCCcccc
Q 026066 130 LSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQFLKSSAGGFLGDLVKW 209 (244)
Q Consensus 130 L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~~l~~~~~~~~~~~i~~ 209 (244)
.+.+..+|.++|+.+|-|+-++ -.+-..+.+.+ +...-.|-++.| |..-+.-...|+.++.-..|- |..
T Consensus 102 VKA~~~e~~~~glrLVEV~k~d-----l~~Lp~l~~~L-r~~~~kFIlFcD-DLSFe~gd~~yK~LKs~LeG~----ve~ 170 (287)
T COG2607 102 VKALLNEYADEGLRLVEVDKED-----LATLPDLVELL-RARPEKFILFCD-DLSFEEGDDAYKALKSALEGG----VEG 170 (287)
T ss_pred HHHHHHHHHhcCCeEEEEcHHH-----HhhHHHHHHHH-hcCCceEEEEec-CCCCCCCchHHHHHHHHhcCC----ccc
Confidence 4566778888888888886432 11222333333 333444555542 333333445677777543221 344
Q ss_pred ceeEEEECC
Q 026066 210 NFEKFLVDK 218 (244)
Q Consensus 210 ~P~~~lID~ 218 (244)
.|..+||-.
T Consensus 171 rP~NVl~YA 179 (287)
T COG2607 171 RPANVLFYA 179 (287)
T ss_pred CCCeEEEEE
Confidence 477776654
No 307
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.92 E-value=3.4e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=31.4
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
..+|.+|.+-+-.=..=......|...+. ++|..++.|++|- ..+...+.++... ++.+++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lk---k~~~kvllVaaD~---~RpAA~eQL~~La-~q~~v~ 157 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLK---KKGKKVLLVAADT---YRPAAIEQLKQLA-EQVGVP 157 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHH---HcCCceEEEeccc---CChHHHHHHHHHH-HHcCCc
Confidence 45566666654332222333334444444 4667888888885 2343344555554 554443
No 308
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=32.68 E-value=1.4e+02 Score=21.99 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=30.7
Q ss_pred EEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhc
Q 026066 112 LIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRF 171 (244)
Q Consensus 112 ll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~ 171 (244)
+..|....|.-|++...-|.+ +|+.+-.+.+- .++-+.+++.+|+ +..
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~-------~gi~~~~~d~~----~~p~t~~eL~~~l-~~~ 50 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKA-------SGHDVEVQDIL----KEPWHADTLRPYF-GNK 50 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEecc----CCCcCHHHHHHHH-HHc
Confidence 344667899999987666654 34444444432 2345789999998 443
No 309
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=32.34 E-value=1.1e+02 Score=24.82 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 127 YSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 127 ~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
.|.+.+|...++.+|..++-|| +.-..+..++..+.++++..
T Consensus 90 T~Gi~eLv~~L~~~~~~v~liS---------GGF~~~i~~Va~~Lgi~~~n 131 (227)
T KOG1615|consen 90 TPGIRELVSRLHARGTQVYLIS---------GGFRQLIEPVAEQLGIPKSN 131 (227)
T ss_pred CCCHHHHHHHHHHcCCeEEEEc---------CChHHHHHHHHHHhCCcHhh
Confidence 3456777888888999999998 34567788887777877643
No 310
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=30.28 E-value=3.6e+02 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=13.4
Q ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 141 GFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 141 ~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
..+||-|.= +..+++.+.++++.
T Consensus 107 ~~EIIVVDD----gStD~T~~i~~~~~ 129 (333)
T PTZ00260 107 KYEIIIVND----GSKDKTLKVAKDFW 129 (333)
T ss_pred CEEEEEEeC----CCCCchHHHHHHHH
Confidence 478888751 22334555666666
No 311
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=30.17 E-value=89 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=20.6
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|.-.++ .+|+++.+..+..-.|++++.|++
T Consensus 320 ~~~~~f-~~g~~~~~~~~~~~~eel~~~i~~ 349 (361)
T COG0821 320 GSGPVF-VKGEIIKKLPEEDIVEELEALIEA 349 (361)
T ss_pred CeeEEE-ECCeEEEecChhhHHHHHHHHHHH
Confidence 444555 579998887776666777776665
No 312
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=30.13 E-value=1.8e+02 Score=20.22 Aligned_cols=18 Identities=28% Similarity=0.113 Sum_probs=14.4
Q ss_pred eeEEEECCCCcEEEecCC
Q 026066 211 FEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g 228 (244)
...++.|++|..+..+.+
T Consensus 101 ~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 101 RALRVEDPLGFPIEFYAE 118 (121)
T ss_pred cEEEEECCCCCEEEEEec
Confidence 457999999999877654
No 313
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=30.12 E-value=1.7e+02 Score=20.90 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=27.9
Q ss_pred cCCcccC-eEEEcCCCCeeecCC-----CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhh
Q 026066 84 TEKSLYD-FTVKDIDGKDVPLSK-----FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKT 139 (244)
Q Consensus 84 ~g~~~pd-f~l~~~~G~~v~l~~-----~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~ 139 (244)
+--..|| +++.|..|+...-++ -+.|+|+|..-. -......|.++.+.|+.
T Consensus 30 VTPRFpdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~-----~~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 30 VTPRFPDGLTVLDAYGQWRDRATGRLIRERSKVVIIVHPD-----TPAAEARIEAIREAYKQ 86 (104)
T ss_pred eccCCCCCceEEeccceEecCCCCcEeecccEEEEEEeCC-----ChHHHHHHHHHHHHHHH
Confidence 3345666 889998887665222 133566655422 23335555555555554
No 314
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=30.07 E-value=62 Score=21.37 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEC--CCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 213 KFLVD--KNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 213 ~~lID--~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
+|.|- .||++..+|.|. .+++.+.--+.|
T Consensus 19 VY~iE~~~~G~~re~YVGp--L~~VVe~Yik~K 49 (72)
T PF07935_consen 19 VYKIEKDINGERRETYVGP--LDDVVETYIKLK 49 (72)
T ss_pred EEEEEeccCCceeeeeecc--HHHHHHHHHhcc
Confidence 45554 599999999984 556555444443
No 315
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=30.04 E-value=1.8e+02 Score=21.92 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=24.1
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
|+-++.+|-..|+.|..+..-|.+. -....+++..+.
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~---D~~~~i~f~~~q 43 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRR---DQGGRIRFAALQ 43 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHh---ccCCcEEEEecc
Confidence 5666778889999999865555442 233346666653
No 316
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=28.48 E-value=1.1e+02 Score=26.73 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=31.6
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
.||||++.|-...=+.+...+..+++...+..-.|+-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 5899988776544466677777788777776666688888764
No 317
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.41 E-value=2.1e+02 Score=20.77 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=32.2
Q ss_pred EEEccCCCCCChHHHHHHHHHHHHHhhCCc--EEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcc
Q 026066 113 IVNVASRCGLTPSNYSELSHLYEKYKTQGF--EILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFP 176 (244)
Q Consensus 113 l~F~a~~C~~C~~~~~~L~~l~~~~~~~~~--~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p 176 (244)
-.|+.+.|..|++...-|++ +|+ +++-+.-+ +-+.+++.+|+ +..+..+.
T Consensus 4 tiy~~p~C~t~rka~~~L~~-------~gi~~~~~~y~~~------~~s~~eL~~~l-~~~g~~~~ 55 (117)
T COG1393 4 TIYGNPNCSTCRKALAWLEE-------HGIEYTFIDYLKT------PPSREELKKIL-SKLGDGVE 55 (117)
T ss_pred EEEeCCCChHHHHHHHHHHH-------cCCCcEEEEeecC------CCCHHHHHHHH-HHcCccHH
Confidence 34668899999977655543 444 44555433 45789999998 66564443
No 318
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=28.28 E-value=31 Score=18.96 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=10.3
Q ss_pred EEEcCCCCeeecCC
Q 026066 92 TVKDIDGKDVPLSK 105 (244)
Q Consensus 92 ~l~~~~G~~v~l~~ 105 (244)
.+.|++|++++|.+
T Consensus 14 ~l~Dv~G~~Inl~~ 27 (32)
T PF10813_consen 14 PLKDVKGNPINLYK 27 (32)
T ss_pred cccccCCCEEechh
Confidence 47788888887753
No 319
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=28.01 E-value=1.1e+02 Score=24.61 Aligned_cols=103 Identities=22% Similarity=0.400 Sum_probs=58.5
Q ss_pred cCeEEEc--CCCCeeecCCC--CCC----EEEEEEc--cCCCCCC-----hHHHHHHHHHHHHHhhC---------CcEE
Q 026066 89 YDFTVKD--IDGKDVPLSKF--KGK----VLLIVNV--ASRCGLT-----PSNYSELSHLYEKYKTQ---------GFEI 144 (244)
Q Consensus 89 pdf~l~~--~~G~~v~l~~~--~Gk----~vll~F~--a~~C~~C-----~~~~~~L~~l~~~~~~~---------~~~v 144 (244)
-||--++ ++++.++|.=+ .|+ -+-+-|| ++.|..| .+....|..+.++|-.+ .+.|
T Consensus 44 adFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVi 123 (210)
T KOG0394|consen 44 ADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVI 123 (210)
T ss_pred hhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEE
Confidence 3555555 46777766433 332 2333444 7888766 56778888888887422 2567
Q ss_pred EEEecCCCCC-CCCCCHHHHHHHHHhhcCCCcceeeecCCCCCCcchhhH
Q 026066 145 LAFPCNQFGG-QEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQ 193 (244)
Q Consensus 145 v~vs~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~l~d~d~~~~~~~~~~~ 193 (244)
+|=-+|--++ ....+.++.++|+..+. ++|++.-.-.+...+...|.
T Consensus 124 lGNKiD~~~~~~r~VS~~~Aq~WC~s~g--nipyfEtSAK~~~NV~~AFe 171 (210)
T KOG0394|consen 124 LGNKIDVDGGKSRQVSEKKAQTWCKSKG--NIPYFETSAKEATNVDEAFE 171 (210)
T ss_pred EcccccCCCCccceeeHHHHHHHHHhcC--CceeEEecccccccHHHHHH
Confidence 7654553222 24557788999995554 56666434334344444443
No 320
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=27.90 E-value=1.5e+02 Score=19.08 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCCEEEEEEccCCCCCChHHHHHH
Q 026066 97 DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSEL 130 (244)
Q Consensus 97 ~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L 130 (244)
+|-.+.+-++++..|.|.|-+ -|..|......|
T Consensus 15 dGGdv~lv~v~~~~V~V~l~G-aC~gC~~s~~Tl 47 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLTG-ACSGCPSSDMTL 47 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEES-SCCSSCCHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEEe-CCCCCCCHHHHH
Confidence 677777878877777777753 466665444444
No 321
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=27.88 E-value=83 Score=22.72 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=29.3
Q ss_pred eecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 101 VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 101 v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
+.+.+..|..++|.=-..=|+.|+-.|.... + +.|..|+.-..
T Consensus 59 l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s---~---~~g~~I~Y~w~ 101 (118)
T PF14427_consen 59 LPLNQVPGDRMLIDGQYPPCNSCKGKMRRAS---E---KSGATIQYTWP 101 (118)
T ss_pred cCccccCCceEEEeeecCCCchhHHHHHHhh---h---ccCcEEEEecC
Confidence 4456667999999888888999996654433 2 23566766653
No 322
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=27.57 E-value=2.2e+02 Score=20.97 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHhhCCcEEEEEecCCCCCCC-------CCCHHHHHHHHHhhcCCCccee
Q 026066 130 LSHLYEKYKTQGFEILAFPCNQFGGQE-------PGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 130 L~~l~~~~~~~~~~vv~vs~d~~~~~~-------~~~~~~~~~~~~~~~~~~~p~l 178 (244)
..+..++++++|..|+.++--+..... ..+.....+|+ ++++++|.-+
T Consensus 29 ~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL-~k~~ipYd~l 83 (126)
T TIGR01689 29 VIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL-NQHNVPYDEI 83 (126)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-HHcCCCCceE
Confidence 334445555678899888843211100 01123678898 7888888655
No 323
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=27.54 E-value=57 Score=25.43 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.0
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.|..+.|+.|-..-|.+.++..+|+++ +.+-.|.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEEE
Confidence 477899999999999999999999876 5544443
No 324
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=27.35 E-value=57 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=18.5
Q ss_pred EEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 114 VNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
.|...||+.|.+..-.|.+ ++..++++.|.
T Consensus 3 ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~ 32 (71)
T cd03060 3 LYSFRRCPYAMRARMALLL-----AGITVELREVE 32 (71)
T ss_pred EEecCCCcHHHHHHHHHHH-----cCCCcEEEEeC
Confidence 3567899999876555543 23345666554
No 325
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=27.02 E-value=5.2e+02 Score=24.08 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=39.0
Q ss_pred cCeEEEcCCCCe---eecCC---CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 89 YDFTVKDIDGKD---VPLSK---FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 89 pdf~l~~~~G~~---v~l~~---~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
|+-.+.++.... |.+.. ...|.++++= +.-.....|...|-++..+++++|+.+|.||
T Consensus 139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDE--PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~IS 202 (500)
T COG1129 139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDE--PTAALTVKETERLFDLIRRLKAQGVAIIYIS 202 (500)
T ss_pred hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcC--CcccCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 666666655422 22211 2446666553 3344678899999999999999999999998
No 326
>PRK11478 putative lyase; Provisional
Probab=26.85 E-value=2.3e+02 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.6
Q ss_pred eeEEEECCCCcEEEec
Q 026066 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~i~~~~ 226 (244)
...|+.|++|+++..+
T Consensus 112 ~~~~~~DPdG~~iEl~ 127 (129)
T PRK11478 112 RFTFFNDPDGLPLELY 127 (129)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4578999999998654
No 327
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=26.62 E-value=2.3e+02 Score=21.17 Aligned_cols=8 Identities=13% Similarity=0.136 Sum_probs=4.0
Q ss_pred HHHHHHHH
Q 026066 160 NPEIKEFA 167 (244)
Q Consensus 160 ~~~~~~~~ 167 (244)
.+++.+++
T Consensus 113 k~~l~~~I 120 (132)
T PRK11509 113 WAELINLM 120 (132)
T ss_pred HHHHHHHH
Confidence 44555554
No 328
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.43 E-value=1.5e+02 Score=20.92 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=28.6
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 116 VASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 116 ~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
....|..|++.+.-|. ++|+.+..+.+- ..+-+.+++.+++ +..+..+.-+
T Consensus 2 ~~~~C~t~rka~~~L~-------~~gi~~~~~d~~----k~p~s~~el~~~l-~~~~~~~~~l 52 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLE-------ENGIEYEFIDYK----KEPLSREELRELL-SKLGNGPDDL 52 (110)
T ss_dssp E-TT-HHHHHHHHHHH-------HTT--EEEEETT----TS---HHHHHHHH-HHHTSSGGGG
T ss_pred cCCCCHHHHHHHHHHH-------HcCCCeEeehhh----hCCCCHHHHHHHH-HHhcccHHHH
Confidence 3567888886655554 356777667653 2345788999998 6767554444
No 329
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.37 E-value=80 Score=31.35 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCCCCChHHHHHHHHHHHH
Q 026066 118 SRCGLTPSNYSELSHLYEK 136 (244)
Q Consensus 118 ~~C~~C~~~~~~L~~l~~~ 136 (244)
.|||-|...+.++.=-+++
T Consensus 173 NWcP~~~TAiSd~EVe~~e 191 (877)
T COG0525 173 NWCPKCRTAISDIEVEYKE 191 (877)
T ss_pred cCCCccccchhhhhhccce
Confidence 6999999888777655544
No 330
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=26.32 E-value=2.9e+02 Score=25.03 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=18.9
Q ss_pred CcEEEEEecCCCCCC-----CCCCHHHHHHHHHhhcCCCccee
Q 026066 141 GFEILAFPCNQFGGQ-----EPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 141 ~~~vv~vs~d~~~~~-----~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
|++++.++.+.-+.. .+...+.+.+.+ .+.+.++-+.
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v-~~~~adlGia 240 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEV-KRYRADIGFA 240 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HhCCCCEEEE
Confidence 566766665432211 122455666665 4555555555
No 331
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=26.27 E-value=1.6e+02 Score=21.12 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.0
Q ss_pred eeEEEECCCCcEEEecCCC
Q 026066 211 FEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~ 229 (244)
-..|+.||+|+.+..+.|.
T Consensus 105 ~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 105 RSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred eEEEEECCCCCEEEEecCC
Confidence 4679999999999988764
No 332
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.98 E-value=2.3e+02 Score=19.64 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.1
Q ss_pred eeEEEECCCCcEEEecCC
Q 026066 211 FEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g 228 (244)
...|+.|++|+.+..+..
T Consensus 102 ~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 102 EALYLSDPEGNGIEIYAD 119 (125)
T ss_pred eEEEEECCCCCEEEEEEe
Confidence 457899999999976643
No 333
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=25.65 E-value=2.5e+02 Score=19.89 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.2
Q ss_pred eeEEEECCCCcEEEecCCC
Q 026066 211 FEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~ 229 (244)
-..++.|++|+.+..+...
T Consensus 103 ~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 103 WSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred eEEEEECCCCCEEEEEEcC
Confidence 4578999999999877544
No 334
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=25.42 E-value=3.1e+02 Score=26.03 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=42.3
Q ss_pred cCCcccCeEEEcCCCCeeecCCCCC--CEEEEEEccCCCCCChHHHHHHHHHHHHH-hhCCcEEEEEecCC
Q 026066 84 TEKSLYDFTVKDIDGKDVPLSKFKG--KVLLIVNVASRCGLTPSNYSELSHLYEKY-KTQGFEILAFPCNQ 151 (244)
Q Consensus 84 ~g~~~pdf~l~~~~G~~v~l~~~~G--k~vll~F~a~~C~~C~~~~~~L~~l~~~~-~~~~~~vv~vs~d~ 151 (244)
.|.++-...++|-.+....-.-.++ -..+|.|.|+.-=.-++.+|.|-.|+..- -.+++.||++.-.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 61 NGHPLNAVSLQDGENHLTEEHAEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCCcccceecccccccccHhhccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 4444444555443222111122233 37788888888777889999999998532 22469999998654
No 335
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.38 E-value=2.4e+02 Score=25.89 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcce
Q 026066 107 KGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPI 177 (244)
Q Consensus 107 ~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 177 (244)
-|||.+|..-. --|.......--.+|.++| ++.|+.++|++. ..+++...+ ++--+.||+
T Consensus 179 igKPFvillNs-~~P~s~et~~L~~eL~ekY---~vpVlpvnc~~l------~~~DI~~Il-~~vLyEFPV 238 (492)
T PF09547_consen 179 IGKPFVILLNS-TKPYSEETQELAEELEEKY---DVPVLPVNCEQL------REEDITRIL-EEVLYEFPV 238 (492)
T ss_pred hCCCEEEEEeC-CCCCCHHHHHHHHHHHHHh---CCcEEEeehHHc------CHHHHHHHH-HHHHhcCCc
Confidence 37865554422 2233332222223445555 589999999863 566777766 554455665
No 336
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=25.14 E-value=1.4e+02 Score=22.96 Aligned_cols=62 Identities=26% Similarity=0.410 Sum_probs=40.5
Q ss_pred EEcCCCCeeecCCCCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHH
Q 026066 93 VKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFA 167 (244)
Q Consensus 93 l~~~~G~~v~l~~~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~ 167 (244)
+-|+||. ++.+|..|..+-+ ...+|+. +...+++.++.++|..++.++.-+ ..-....++|+
T Consensus 3 vsDIDGT-iT~SD~~G~i~~~-~G~d~~h------~g~~~l~~~i~~~GY~ilYlTaRp-----~~qa~~Tr~~L 64 (157)
T PF08235_consen 3 VSDIDGT-ITKSDVLGHILPI-LGKDWTH------PGAAELYRKIADNGYKILYLTARP-----IGQANRTRSWL 64 (157)
T ss_pred EEeccCC-cCccchhhhhhhc-cCchhhh------hcHHHHHHHHHHCCeEEEEECcCc-----HHHHHHHHHHH
Confidence 5678886 6778877764333 3344543 455778899999999999998542 12234455666
No 337
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=24.80 E-value=83 Score=27.06 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=12.4
Q ss_pred cCCCCCChHHHHHHHHHHHHHh
Q 026066 117 ASRCGLTPSNYSELSHLYEKYK 138 (244)
Q Consensus 117 a~~C~~C~~~~~~L~~l~~~~~ 138 (244)
.+|||.|-. ...++.+.+.+.
T Consensus 18 ~~~CpGCg~-~~i~~~i~~al~ 38 (301)
T PRK05778 18 TTWCPGCGN-FGILNAIIQALA 38 (301)
T ss_pred CCCCCCCCC-hHHHHHHHHHHH
Confidence 469999973 344444444443
No 338
>PHA02762 hypothetical protein; Provisional
Probab=24.76 E-value=1.5e+02 Score=18.35 Aligned_cols=32 Identities=13% Similarity=0.035 Sum_probs=22.0
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhhcc
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLLSR 243 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~~ 243 (244)
..++=||.+|++.+...... ..++.+-++++|
T Consensus 29 fvtigide~g~iayisiep~-dkdl~~~i~rik 60 (62)
T PHA02762 29 FVTIGIDENDKISYISIEPL-DKDLKEGIKRIK 60 (62)
T ss_pred EEEEeECCCCcEEEEEeccc-chHHHHhhhhee
Confidence 44677999999988765332 246777777665
No 339
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=24.19 E-value=2.4e+02 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.8
Q ss_pred eeEEEECCCCcEEEec
Q 026066 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~i~~~~ 226 (244)
...++.|++|+.+...
T Consensus 94 ~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 94 RRFFVRDPFGKLVNIL 109 (112)
T ss_pred EEEEEECCCCCEEEEE
Confidence 4578999999988654
No 340
>PF14903 WG_beta_rep: WG containing repeat
Probab=24.15 E-value=52 Score=17.52 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.5
Q ss_pred EECCCCcEEE
Q 026066 215 LVDKNGKVIE 224 (244)
Q Consensus 215 lID~~G~i~~ 224 (244)
+||.+|+++.
T Consensus 3 ~id~~G~~vi 12 (35)
T PF14903_consen 3 YIDKNGKIVI 12 (35)
T ss_pred EEeCCCCEEE
Confidence 7899999885
No 341
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=23.78 E-value=2.5e+02 Score=19.28 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=12.4
Q ss_pred eeEEEECCCCcEEEe
Q 026066 211 FEKFLVDKNGKVIER 225 (244)
Q Consensus 211 P~~~lID~~G~i~~~ 225 (244)
...++.|++|+++..
T Consensus 103 ~~~~~~DP~G~~ie~ 117 (119)
T cd08359 103 RHFIVRDPNGVLIDI 117 (119)
T ss_pred eEEEEECCCCCEEEE
Confidence 567899999998764
No 342
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.52 E-value=65 Score=27.46 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=13.4
Q ss_pred cCCCCCChHHHHHHHHHHHHH
Q 026066 117 ASRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 117 a~~C~~C~~~~~~L~~l~~~~ 137 (244)
-+|||.|-... .++.+.+.+
T Consensus 17 ~~~CpGCg~~~-il~~l~~al 36 (286)
T PRK11867 17 PRWCPGCGDGS-ILAALQRAL 36 (286)
T ss_pred CCcCCCCCCHH-HHHHHHHHH
Confidence 35999997554 556665555
No 343
>PLN03034 phosphoglycerate kinase; Provisional
Probab=23.37 E-value=6e+02 Score=23.54 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEE--ccCC--CCC--C----hHHHHHHHHHHHHHhhCCcEEEEEe-cCCCCC-CCCCCHHHHHHHHHhhc
Q 026066 104 SKFKGKVLLIVN--VASR--CGL--T----PSNYSELSHLYEKYKTQGFEILAFP-CNQFGG-QEPGSNPEIKEFACTRF 171 (244)
Q Consensus 104 ~~~~Gk~vll~F--~a~~--C~~--C----~~~~~~L~~l~~~~~~~~~~vv~vs-~d~~~~-~~~~~~~~~~~~~~~~~ 171 (244)
.+++||.|+|-. --+- -+. + +..+|.++.+. ++|..+|-++ ....++ .+.-+.+.+.+.+.+..
T Consensus 88 ~dl~GK~VlvRvD~NvPi~~~g~I~Dd~RI~a~lpTI~~L~----~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL 163 (481)
T PLN03034 88 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAIPTIKYLI----SNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELL 163 (481)
T ss_pred hhcCCCEEEEEeccCCCcCCCCcccChHhHHHHHHHHHHHH----HCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHh
Confidence 367899888844 2211 010 1 12344444444 3455666554 221111 11234556666665656
Q ss_pred CCCcceeeecCCCCC
Q 026066 172 KAEFPIFDKVDVNGP 186 (244)
Q Consensus 172 ~~~~p~l~d~d~~~~ 186 (244)
+.+..++ .|+-|.
T Consensus 164 ~~~V~fv--~d~~G~ 176 (481)
T PLN03034 164 GIQVVKA--DDCIGP 176 (481)
T ss_pred CCCeEEC--CCCCCH
Confidence 6655555 344444
No 344
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.36 E-value=3.7e+02 Score=21.12 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 123 TPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 123 C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.......|++ +.++|+.++..+ ..+...+..++ +++++..+++
T Consensus 17 ~~~~~~al~~----l~~~g~~~~i~T--------GR~~~~~~~~~-~~~~~~~~~I 59 (254)
T PF08282_consen 17 SPETIEALKE----LQEKGIKLVIAT--------GRSYSSIKRLL-KELGIDDYFI 59 (254)
T ss_dssp CHHHHHHHHH----HHHTTCEEEEEC--------SSTHHHHHHHH-HHTTHCSEEE
T ss_pred CHHHHHHHHh----hcccceEEEEEc--------cCccccccccc-ccccchhhhc
Confidence 4445455554 444778777766 23677788887 6666664444
No 345
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=22.87 E-value=5.1e+02 Score=23.40 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=17.8
Q ss_pred CcEEEEEecCCCCCC-----CCCCHHHHHHHHHhhcCCCccee
Q 026066 141 GFEILAFPCNQFGGQ-----EPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 141 ~~~vv~vs~d~~~~~-----~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
|++++.++.++-+.. .+...+++.+.+ ++.+.++-+.
T Consensus 195 G~~v~~~n~~~dg~~~~~~~~~~~l~~l~~~v-~~~~adlGia 236 (443)
T PRK10887 195 GAEVIAIGCEPNGLNINDECGATDPEALQAAV-LAEKADLGIA 236 (443)
T ss_pred CCeEEEEeccCCCCCCCCCCCCCCHHHHHHHH-HhcCCCeeeE
Confidence 466666655432211 113445566665 4445555555
No 346
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=22.69 E-value=57 Score=27.66 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred EEEEEE---ccCCCCCChHHHH
Q 026066 110 VLLIVN---VASRCGLTPSNYS 128 (244)
Q Consensus 110 ~vll~F---~a~~C~~C~~~~~ 128 (244)
.+||-| |.-||..|..++.
T Consensus 42 ilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 42 ILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred eEEEEEecccchhhccHHHhhh
Confidence 566767 4789999997764
No 347
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=22.61 E-value=1.5e+02 Score=20.52 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=19.7
Q ss_pred eeEEEECCCCcEEEecCCCCChhhHHHHHhh
Q 026066 211 FEKFLVDKNGKVIERYPPTTSPFQIEVHFLL 241 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~~~~~~l~~~l~~ 241 (244)
|..-|.+++|++.|. ..++++..+.+++
T Consensus 49 PlV~V~~p~g~v~Y~---~V~~edv~~Iv~~ 76 (92)
T cd03063 49 PLVEVETPGGRVAYG---PVTPADVASLLDA 76 (92)
T ss_pred CEEEEEeCCCcEEEE---eCCHHHHHHHHHH
Confidence 777777798876554 4478887777665
No 348
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=22.09 E-value=1.3e+02 Score=19.35 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=18.5
Q ss_pred eeEEEECCCCcEEEec----CCCC-ChhhHHHHHhhc
Q 026066 211 FEKFLVDKNGKVIERY----PPTT-SPFQIEVHFLLS 242 (244)
Q Consensus 211 P~~~lID~~G~i~~~~----~g~~-~~~~l~~~l~~~ 242 (244)
--.|.||++|++.... .|.. -.++..+.++++
T Consensus 19 ~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~ 55 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKW 55 (79)
T ss_dssp EEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-
T ss_pred EEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhC
Confidence 3468999999988532 2221 234455665553
No 349
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=21.91 E-value=2.8e+02 Score=19.10 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=14.9
Q ss_pred eeEEEECCCCcEEEecCC
Q 026066 211 FEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g 228 (244)
-..++-||+|+.+..+.|
T Consensus 93 ~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 93 KRVTLTDPDGFPVELVYG 110 (113)
T ss_pred eEEEEECCCCCEEEEEec
Confidence 357999999999987765
No 350
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=21.85 E-value=3.1e+02 Score=19.64 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.2
Q ss_pred eeEEEECCCCcEEEecCCC
Q 026066 211 FEKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~g~ 229 (244)
...|+.|++|+.+....+.
T Consensus 98 ~~~~f~DPdG~~iEl~~~~ 116 (131)
T cd08363 98 KSIYFTDPDGHKLEVHTGT 116 (131)
T ss_pred eEEEEECCCCCEEEEecCc
Confidence 5689999999999888764
No 351
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=21.74 E-value=2.7e+02 Score=23.29 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=28.7
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEe
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFP 148 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs 148 (244)
|++.||||++-.- ...+. ...|..+.+.++..|+.+|+|.
T Consensus 48 F~~~PvVlDl~~l-~~~~~--~~dl~~L~~~Lr~~gl~~vGV~ 87 (248)
T PRK04596 48 FGRAAVILDFGGL-SQVPD--LATAKALLDGLRSAGVLPVALA 87 (248)
T ss_pred hCCCcEEEEchhh-cCccc--cccHHHHHHHHHHCCCEEEEEe
Confidence 5788999999542 22221 2357778888888999999997
No 352
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.61 E-value=3.3e+02 Score=24.69 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=36.4
Q ss_pred CCCCEEEEEEccCC----CCCChHHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC
Q 026066 106 FKGKVLLIVNVASR----CGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE 174 (244)
Q Consensus 106 ~~Gk~vll~F~a~~----C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~ 174 (244)
-+||+-||.|.+-. ...|. ++.-.|+++|..+..|..|.| ..+.-+.+++++ ++-+++
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~-------KlA~y~kkkG~K~~LvcaDTF---RagAfDQLkqnA-~k~~iP 158 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCT-------KLAYYYKKKGYKVALVCADTF---RAGAFDQLKQNA-TKARVP 158 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHH-------HHHHHHHhcCCceeEEeeccc---ccchHHHHHHHh-HhhCCe
Confidence 47888888887432 23455 444556678899988888854 334455666666 554443
No 353
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.41 E-value=2.9e+02 Score=19.21 Aligned_cols=40 Identities=10% Similarity=0.183 Sum_probs=32.5
Q ss_pred CEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEEec
Q 026066 109 KVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPC 149 (244)
Q Consensus 109 k~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~vs~ 149 (244)
+.+||++-. .+..-..-+..|.+++++++.+|+.++.+.+
T Consensus 49 ~~vIlD~s~-v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~ 88 (117)
T PF01740_consen 49 KNVILDMSG-VSFIDSSGIQALVDIIKELRRRGVQLVLVGL 88 (117)
T ss_dssp SEEEEEETT-ESEESHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred eEEEEEEEe-CCcCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 688888854 3456677888999999999999999998874
No 354
>PRK06756 flavodoxin; Provisional
Probab=21.24 E-value=2.9e+02 Score=20.43 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.6
Q ss_pred CCCCEEEE
Q 026066 106 FKGKVLLI 113 (244)
Q Consensus 106 ~~Gk~vll 113 (244)
++||++.+
T Consensus 81 l~~k~~~~ 88 (148)
T PRK06756 81 LTGKKAAV 88 (148)
T ss_pred CCCCEEEE
Confidence 34554444
No 355
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=21.17 E-value=1.7e+02 Score=18.32 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.2
Q ss_pred ceeEEEECCCCcEEEecCC
Q 026066 210 NFEKFLVDKNGKVIERYPP 228 (244)
Q Consensus 210 ~P~~~lID~~G~i~~~~~g 228 (244)
.+-.+.+|.+|+|...+-|
T Consensus 42 dRLnv~~D~~g~I~~v~CG 60 (60)
T PF11720_consen 42 DRLNVEVDDDGVITRVRCG 60 (60)
T ss_pred CcEEEEECCCCcEEEEecC
Confidence 3678999999999876544
No 356
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=21.16 E-value=5.6e+02 Score=23.18 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhcCCCccee
Q 026066 160 NPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~l 178 (244)
.+++.+.+ ++.+.++-+.
T Consensus 224 l~~l~~~v-~~~~adlGia 241 (448)
T PRK14315 224 PEALAKKV-REVRADIGIA 241 (448)
T ss_pred HHHHHHHH-HHcCCCEEEE
Confidence 44555555 4445544444
No 357
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.97 E-value=1.1e+02 Score=20.71 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=11.9
Q ss_pred eEEEECCCCcEEEecCCC
Q 026066 212 EKFLVDKNGKVIERYPPT 229 (244)
Q Consensus 212 ~~~lID~~G~i~~~~~g~ 229 (244)
-+.|.|++|+.++++...
T Consensus 27 D~~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSDG 44 (82)
T ss_dssp EEEEE-TT--EEEETTTT
T ss_pred EEEEECCCCCEEEEecCC
Confidence 367889999999999744
No 358
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=20.67 E-value=1.1e+02 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=10.8
Q ss_pred CCCCCChHHHHHHHHHHHHH
Q 026066 118 SRCGLTPSNYSELSHLYEKY 137 (244)
Q Consensus 118 ~~C~~C~~~~~~L~~l~~~~ 137 (244)
+|||.|-. ...|..+.+.+
T Consensus 2 ~~CpGCg~-~~i~~~~~~a~ 20 (287)
T TIGR02177 2 DWCPGCGD-FGILSALQRAL 20 (287)
T ss_pred CcCCCCCC-hHHHHHHHHHH
Confidence 59999974 23334444333
No 359
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=20.35 E-value=4.8e+02 Score=21.28 Aligned_cols=34 Identities=3% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCC
Q 026066 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKA 173 (244)
Q Consensus 131 ~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~ 173 (244)
.+..++++++|+.|+-.+ -.....+..++ +++++
T Consensus 26 ~~ai~~l~~~G~~~~iaT--------GR~~~~~~~~~-~~l~~ 59 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTT--------GRPYAGVHRYL-KELHM 59 (270)
T ss_pred HHHHHHHHHCCCEEEEec--------CCChHHHHHHH-HHhCC
Confidence 344455667888877776 22445566666 55554
No 360
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=20.31 E-value=2.5e+02 Score=23.28 Aligned_cols=38 Identities=11% Similarity=0.313 Sum_probs=27.4
Q ss_pred HHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCC-cceee
Q 026066 133 LYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAE-FPIFD 179 (244)
Q Consensus 133 l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~l~ 179 (244)
++.++++.|+.||.++.- +..++..+. +..+++ -|.+.
T Consensus 31 v~~el~d~G~~Vi~~SSK--------T~aE~~~l~-~~l~v~~~p~ia 69 (274)
T COG3769 31 VLLELKDAGVPVILCSSK--------TRAEMLYLQ-KSLGVQGLPLIA 69 (274)
T ss_pred HHHHHHHcCCeEEEeccc--------hHHHHHHHH-HhcCCCCCceee
Confidence 455667789999999853 566666665 787877 66663
No 361
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=20.27 E-value=5.1e+02 Score=21.58 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=12.2
Q ss_pred eeEEEECCCCcEEEec
Q 026066 211 FEKFLVDKNGKVIERY 226 (244)
Q Consensus 211 P~~~lID~~G~i~~~~ 226 (244)
+..+++|-||.+....
T Consensus 158 ~~~~~~D~dgtl~~~~ 173 (300)
T PHA02530 158 PKAVIFDIDGTLAKMG 173 (300)
T ss_pred CCEEEEECCCcCcCCC
Confidence 3478899999988643
No 362
>PRK10200 putative racemase; Provisional
Probab=20.26 E-value=2.1e+02 Score=23.34 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCcceee
Q 026066 125 SNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFD 179 (244)
Q Consensus 125 ~~~~~L~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ 179 (244)
...+.|.+..+.+.+.|+++|.|.+| +.....+.+++.+ +.|++.
T Consensus 59 ~~~~~l~~~~~~L~~~g~~~iviaCN--------Tah~~~~~l~~~~--~iPii~ 103 (230)
T PRK10200 59 KTGDILAEAALGLQRAGAEGIVLCTN--------TMHKVADAIESRC--SLPFLH 103 (230)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCc--------hHHHHHHHHHHhC--CCCEee
Confidence 35678888888888999999999998 5555556664544 456653
No 363
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.19 E-value=3.1e+02 Score=18.98 Aligned_cols=17 Identities=18% Similarity=0.020 Sum_probs=13.9
Q ss_pred eeEEEECCCCcEEEecC
Q 026066 211 FEKFLVDKNGKVIERYP 227 (244)
Q Consensus 211 P~~~lID~~G~i~~~~~ 227 (244)
...++.||+|+++....
T Consensus 102 r~~~~~DPdGn~iei~~ 118 (120)
T cd09011 102 RVVRFYDPDKHIIEVGE 118 (120)
T ss_pred EEEEEECCCCCEEEEec
Confidence 56899999999987653
No 364
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.18 E-value=4.7e+02 Score=21.08 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCcEEEEEecCCCCCCCCCCHHHHHHHHHhhcCCCccee
Q 026066 131 SHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIF 178 (244)
Q Consensus 131 ~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l 178 (244)
.+..++++++|+.++..+- .+...+..++ ++.++..+++
T Consensus 21 ~~ai~~l~~~G~~~vi~Tg--------R~~~~~~~~~-~~lg~~~~~I 59 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSS--------KTRAEQEYYR-EELGVEPPFI 59 (225)
T ss_pred HHHHHHHHHCCCEEEEEeC--------CCHHHHHHHH-HHcCCCCcEE
Confidence 4444555667888888863 3567777777 7777655555
No 365
>PRK09267 flavodoxin FldA; Validated
Probab=20.17 E-value=3e+02 Score=20.83 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=4.1
Q ss_pred EEEEccCCC
Q 026066 112 LIVNVASRC 120 (244)
Q Consensus 112 ll~F~a~~C 120 (244)
||.-..+|+
T Consensus 50 vi~g~pt~~ 58 (169)
T PRK09267 50 LILGIPTWG 58 (169)
T ss_pred EEEEecCcC
Confidence 333345564
No 366
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.16 E-value=2.5e+02 Score=18.00 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=12.9
Q ss_pred EEccCCCCCChHHHHHHHH
Q 026066 114 VNVASRCGLTPSNYSELSH 132 (244)
Q Consensus 114 ~F~a~~C~~C~~~~~~L~~ 132 (244)
.+...+|+.|.+..-.|.+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 3556799999966555543
No 367
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.05 E-value=1.3e+02 Score=26.63 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=20.7
Q ss_pred eEEEECCCCcEEEecCCCCChhhHHHHHhhc
Q 026066 212 EKFLVDKNGKVIERYPPTTSPFQIEVHFLLS 242 (244)
Q Consensus 212 ~~~lID~~G~i~~~~~g~~~~~~l~~~l~~~ 242 (244)
..+++-++|+++.+.....-.++|.+.|+++
T Consensus 326 ~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 326 PKGPVFVDGEKIKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred CceEEEECCEEeeeeChHhHHHHHHHHHHHH
Confidence 3456668999999886554555666666543
No 368
>PF05209 MinC_N: Septum formation inhibitor MinC, N-terminal domain; InterPro: IPR007874 In Escherichia coli FtsZ (P0A9A6 from SWISSPROT) assembles into a Z ring at midcell. Its assembly at polar sites is prevented by the min system. MinC P18196 from SWISSPROT, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with the MinDE proteins. MinC is an oligomer, probably a dimer []. The C-terminal half of MinC is the most conserved and interacts with MinD. The N-terminal half is thought to interact with FtsZ. MinC rapidly oscillates between the poles of the cell to destabilise FtsZ filaments that have formed before they mature into polar Z rings; GO: 0051302 regulation of cell division; PDB: 3GHF_A 1HF2_C.
Probab=20.04 E-value=70 Score=22.31 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCCEEEEEEccCCCCCChHHHHHHHHHHHHHhhCCcEEEEE
Q 026066 106 FKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAF 147 (244)
Q Consensus 106 ~~Gk~vll~F~a~~C~~C~~~~~~L~~l~~~~~~~~~~vv~v 147 (244)
|+|-+++|++-.- ... .++.++.+-+++.|+.+|+|
T Consensus 43 F~~~pvvldl~~l---~~~---~dl~~L~~~l~~~gl~~vgv 78 (99)
T PF05209_consen 43 FKNAPVVLDLSNL---PDE---LDLAALVELLRRHGLRPVGV 78 (99)
T ss_dssp CTTTEEEEEEEEE---ETT---HHHHHHHHHHHCCCHCCCCE
T ss_pred HcCCCeEEehhhc---CCh---hhHHHHHHHHHHcCCEEEEe
Confidence 4677888887654 222 24566666667778888888
Done!