BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026067
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana
GN=RPL13 PE=1 SV=1
Length = 241
Score = 337 bits (864), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 159/216 (73%), Positives = 180/216 (83%), Gaps = 9/216 (4%)
Query: 38 TPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPD 88
+PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPD
Sbjct: 26 SPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPD 85
Query: 89 IWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVI 148
IWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VI
Sbjct: 86 IWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVI 145
Query: 149 VVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLG 208
VVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGRLG
Sbjct: 146 VVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLG 205
Query: 209 RELFTHLKVYKGPNHPHEAQQPIELPIRDKRIQKQR 244
R LF HLKVYKGP+HPHEAQ+P++LPIRDKRIQ Q+
Sbjct: 206 RALFNHLKVYKGPDHPHEAQKPLDLPIRDKRIQLQK 241
>sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea
GN=RPL13 PE=1 SV=1
Length = 250
Score = 313 bits (801), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 159/259 (61%), Positives = 185/259 (71%), Gaps = 24/259 (9%)
Query: 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFS-------------VAS 47
MAT+ + + F S Q+ S GT + TP L F ++
Sbjct: 1 MATMACASSLTFPSAQTQKSF-------FGTNVKQ--TPVLSFPRPTVAAAVAVSARKST 51
Query: 48 AKSTSPLNTKRSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSD 105
+ ST R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +D
Sbjct: 52 SASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTD 111
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQK
Sbjct: 112 KKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQK 171
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGRLGR LF HLKVYKG HPH
Sbjct: 172 LYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPH 231
Query: 226 EAQQPIELPIRDKRIQKQR 244
+AQQPI+LP+RDKRI+ ++
Sbjct: 232 QAQQPIDLPLRDKRIRVEK 250
>sp|Q3MF94|RL13_ANAVT 50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplM PE=3 SV=1
Length = 151
Score = 206 bits (523), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 112/131 (85%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK LG++LFT LKVY GP HP
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHP 132
Query: 225 HEAQQPIELPI 235
H+AQ+P EL I
Sbjct: 133 HDAQKPKELNI 143
>sp|Q8YPK6|RL13_NOSS1 50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplM PE=3 SV=1
Length = 151
Score = 204 bits (518), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 112/131 (85%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK LG++LFT LKVY GP HP
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHP 132
Query: 225 HEAQQPIELPI 235
H+AQ+P EL I
Sbjct: 133 HDAQKPKELNI 143
>sp|Q6H001|RL13_FREDI 50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3
SV=2
Length = 151
Score = 201 bits (510), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 91/131 (69%), Positives = 110/131 (83%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+NAEK+AV+GKKRTQ
Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK LG++LFT LKVY GP HP
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPKNSLGKQLFTKLKVYAGPTHP 132
Query: 225 HEAQQPIELPI 235
H AQ+P EL +
Sbjct: 133 HAAQKPKELKV 143
>sp|B8HMT1|RL13_CYAP4 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rplM PE=3 SV=1
Length = 149
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/146 (65%), Positives = 114/146 (78%), Gaps = 3/146 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P + WYVVDAT++ LGRLA+ IA+ +RGK YTPS+D G +VIVV
Sbjct: 2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 210
NAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK LGR
Sbjct: 59 NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 118
Query: 211 LFTHLKVYKGPNHPHEAQQPIELPIR 236
LFT LKVY GP+HPH+AQ+P L ++
Sbjct: 119 LFTKLKVYAGPDHPHQAQKPEVLTLK 144
>sp|Q8DMK8|RL13_THEEB 50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplM PE=3 SV=1
Length = 152
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/128 (72%), Positives = 107/128 (83%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA D+ LGRLA+ IA +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+Y
Sbjct: 19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLY 78
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEA 227
RRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK LGR+LFT LKVY GP HPH+A
Sbjct: 79 RRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGPEHPHQA 138
Query: 228 QQPIELPI 235
Q+P L I
Sbjct: 139 QKPQPLTI 146
>sp|B1WQT8|RL13_CYAA5 50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142)
GN=rplM PE=3 SV=1
Length = 151
Score = 197 bits (500), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 90/129 (69%), Positives = 109/129 (84%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DATD+ LGRLA +A +RGKN TYTP +D G +VI++NA+KVAV+G+K TQ
Sbjct: 13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK LGR+LFT LKVY GPNHP
Sbjct: 73 KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPKNALGRQLFTKLKVYPGPNHP 132
Query: 225 HEAQQPIEL 233
H+AQ+P EL
Sbjct: 133 HQAQKPEEL 141
>sp|B0JY35|RL13_MICAN 50S ribosomal protein L13 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplM PE=3 SV=1
Length = 151
Score = 194 bits (493), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 108/131 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR Q
Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK LGR+LFT LKVY G HP
Sbjct: 73 KVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGAEHP 132
Query: 225 HEAQQPIELPI 235
H+AQQP L I
Sbjct: 133 HQAQQPEVLAI 143
>sp|B7K221|RL13_CYAP8 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801)
GN=rplM PE=3 SV=1
Length = 151
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 106/126 (84%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DA D+ LGRLAS +A +RGKN T+TP +D G +VI+VNAEKV V+GKK +Q
Sbjct: 13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK LGR+LFT LKVY GP HP
Sbjct: 73 KLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSLGRKLFTKLKVYTGPTHP 132
Query: 225 HEAQQP 230
H+AQQP
Sbjct: 133 HQAQQP 138
>sp|B1XJI1|RL13_SYNP2 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplM PE=3 SV=1
Length = 151
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/131 (70%), Positives = 103/131 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVVNAEKV V+G+K Q
Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK LGR LFT LKVY G HP
Sbjct: 73 KLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPKNALGRRLFTKLKVYAGTEHP 132
Query: 225 HEAQQPIELPI 235
H AQQP L I
Sbjct: 133 HAAQQPEVLTI 143
>sp|B7KI14|RL13_CYAP7 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424)
GN=rplM PE=3 SV=1
Length = 151
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 105/131 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+NAEKV V+GKK Q
Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK LGR+LFT LKVY G NHP
Sbjct: 73 KVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPKNSLGRQLFTKLKVYSGSNHP 132
Query: 225 HEAQQPIELPI 235
H+AQ+P L I
Sbjct: 133 HQAQKPETLTI 143
>sp|P73294|RL13_SYNY3 50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplM PE=3 SV=1
Length = 151
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/131 (65%), Positives = 106/131 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D WYV+DA + LGRLA+ +A +RGKN T+TP +D G +VI++NAEK+ V+G+KR Q
Sbjct: 13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK LGR+LFT LKVY GP+HP
Sbjct: 73 KLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRKLFTKLKVYAGPSHP 132
Query: 225 HEAQQPIELPI 235
H AQQP L I
Sbjct: 133 HAAQQPETLVI 143
>sp|B0C427|RL13_ACAM1 50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC
11017) GN=rplM PE=3 SV=1
Length = 151
Score = 186 bits (473), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/133 (66%), Positives = 106/133 (79%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+DK WYVVDA ++ LGRLA+ IA+ +RGKN TYTP ++ G +VIV+NAEKV V+G K
Sbjct: 12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGE 71
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNH 223
QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK LGR+LF LKVY GP+H
Sbjct: 72 QKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPKNALGRQLFRSLKVYAGPDH 131
Query: 224 PHEAQQPIELPIR 236
PH AQ+P L I+
Sbjct: 132 PHAAQKPEVLSIQ 144
>sp|Q2JL71|RL13_SYNJB 50S ribosomal protein L13 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rplM PE=3 SV=1
Length = 151
Score = 186 bits (472), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 103/128 (80%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA+ +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEA 227
RRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP RLGR FT LKVY GPNHPHEA
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRLGRRQFTKLKVYVGPNHPHEA 135
Query: 228 QQPIELPI 235
QQP P+
Sbjct: 136 QQPQVYPL 143
>sp|Q5N0T9|RL13_SYNP6 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1
Length = 151
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 210
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK LGR+
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQ 118
Query: 211 LFTHLKVYKGPNHPHEAQQPIELPIR 236
LFT LKVY+G HPH+AQQP L I+
Sbjct: 119 LFTKLKVYRGAEHPHQAQQPEVLSIQ 144
>sp|Q31L33|RL13_SYNE7 50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC
7942) GN=rplM PE=3 SV=1
Length = 151
Score = 185 bits (469), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRE 210
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK LGR+
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPKNALGRQ 118
Query: 211 LFTHLKVYKGPNHPHEAQQPIELPIR 236
LFT LKVY+G HPH+AQQP L I+
Sbjct: 119 LFTKLKVYRGAEHPHQAQQPEVLSIQ 144
>sp|Q2JUJ8|RL13_SYNJA 50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplM PE=3 SV=1
Length = 151
Score = 184 bits (466), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 102/128 (79%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEA 227
RRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP RLGR FT LKVY GP+HPHEA
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRLGRRQFTKLKVYAGPHHPHEA 135
Query: 228 QQPIELPI 235
QQP PI
Sbjct: 136 QQPQVYPI 143
>sp|Q318L0|RL13_PROM9 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplM PE=3 SV=1
Length = 143
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEK+ VSGKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGADHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVLL 141
>sp|A2BTB2|RL13_PROMS 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
AS9601) GN=rplM PE=3 SV=1
Length = 143
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGADHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVLL 141
>sp|A2BYR0|RL13_PROM5 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9515) GN=rplM PE=3 SV=1
Length = 143
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 100/129 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGSEHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVSL 141
>sp|A3PF22|RL13_PROM0 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplM PE=3 SV=1
Length = 143
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/129 (65%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGADHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVLL 141
>sp|Q7UZW8|RL13_PROMP 50S ribosomal protein L13 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1
Length = 143
Score = 180 bits (457), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 83/129 (64%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRL++ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP LGR+ F LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGSDHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVLL 141
>sp|Q0ID31|RL13_SYNS3 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311)
GN=rplM PE=3 SV=1
Length = 150
Score = 180 bits (457), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 103/131 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +VIVVNA+K+ VSGKK Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP LGR+LF LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLPHNALGRQLFRKLKVYKGTEHP 132
Query: 225 HEAQQPIELPI 235
H AQQP L +
Sbjct: 133 HAAQQPKTLQL 143
>sp|Q110D4|RL13_TRIEI 50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplM PE=3 SV=1
Length = 151
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 103/131 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K WYV+DA + LGRLA+ IA+ IRGKN TYTP +D G +VIVVNAEKV V+GKK +QK
Sbjct: 14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQK 73
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK LGR+L LKVY G NHPH
Sbjct: 74 LYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLKVYPGSNHPH 133
Query: 226 EAQQPIELPIR 236
EAQ+P +L I+
Sbjct: 134 EAQKPEKLTIQ 144
>sp|Q46IT5|RL13_PROMT 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL2A) GN=rplM PE=3 SV=1
Length = 150
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 105/138 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RLGR+LFT LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLKVYKGSDHP 132
Query: 225 HEAQQPIELPIRDKRIQK 242
H AQ+P L + + + K
Sbjct: 133 HSAQEPKILSLNSESVTK 150
>sp|A2C4X4|RL13_PROM1 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL1A) GN=rplM PE=3 SV=1
Length = 150
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 82/138 (59%), Positives = 105/138 (76%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP RLGR+LFT LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLKVYKGSDHP 132
Query: 225 HEAQQPIELPIRDKRIQK 242
H AQ+P L + + + K
Sbjct: 133 HSAQEPKILSLNSESVTK 150
>sp|A8G736|RL13_PROM2 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplM PE=3 SV=1
Length = 143
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/129 (63%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA +K LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP LGR+ F LKVYKG +HP
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGADHP 132
Query: 225 HEAQQPIEL 233
H AQ P+ L
Sbjct: 133 HAAQNPVLL 141
>sp|Q7U4H5|RL13_SYNPX 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102)
GN=rplM PE=3 SV=1
Length = 150
Score = 177 bits (449), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 101/129 (78%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA +K LGRLA+ +A +RGKN ++TP +D G +V+VVNAEK+ VSG K TQ
Sbjct: 13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR++F LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLPHNALGRQMFRKLKVYKGSEHP 132
Query: 225 HEAQQPIEL 233
H AQ+P L
Sbjct: 133 HAAQKPQPL 141
>sp|Q3AW67|RL13_SYNS9 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902)
GN=rplM PE=3 SV=2
Length = 150
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/129 (62%), Positives = 100/129 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGKN +TP +D G +V+VVNAEK+ VSGKK Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR+++ LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNALGRQMYRKLKVYKGTEHP 132
Query: 225 HEAQQPIEL 233
H AQ+P L
Sbjct: 133 HSAQKPQPL 141
>sp|Q7V9Y8|RL13_PROMA 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplM PE=3 SV=1
Length = 150
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 101/131 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA ++ LGRLA+ +A +RGKN ++TP +D G +VI+VNAEK+ V+GKK Q
Sbjct: 13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR+LF LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLPHNALGRQLFRKLKVYKGSEHP 132
Query: 225 HEAQQPIELPI 235
H AQ P L I
Sbjct: 133 HSAQNPQVLSI 143
>sp|P51292|RK13_PORPU 50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea
GN=rpl13 PE=3 SV=1
Length = 142
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 78/129 (60%), Positives = 106/129 (82%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ ++WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ +V+VSG K T
Sbjct: 11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTT 70
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNH 223
QK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG LGR+LFT LKVY GP+H
Sbjct: 71 QKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKGPLGRKLFTKLKVYPGPSH 130
Query: 224 PHEAQQPIE 232
PH AQ+P E
Sbjct: 131 PHAAQKPQE 139
>sp|A5GIR9|RL13_SYNPW 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803)
GN=rplM PE=3 SV=1
Length = 150
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 79/131 (60%), Positives = 101/131 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR++F LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLPHNALGRQMFRKLKVYKGAEHP 132
Query: 225 HEAQQPIELPI 235
H AQQP L +
Sbjct: 133 HAAQQPKPLQL 143
>sp|Q3AMQ6|RL13_SYNSC 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605)
GN=rplM PE=3 SV=1
Length = 150
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/129 (61%), Positives = 100/129 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGK ++TP +D G +V+VVNAEK+ VSG+K Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP LGR++F LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLPHNALGRQMFRKLKVYKGTEHP 132
Query: 225 HEAQQPIEL 233
H AQ+P L
Sbjct: 133 HAAQKPQPL 141
>sp|A5GVY6|RL13_SYNR3 50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307)
GN=rplM PE=3 SV=1
Length = 150
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 98/126 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDA ++ LGRLA+ +A +RGKN TYTP +D G +V+V+NA+KV V+G K +
Sbjct: 13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASD 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP LGR+LF LKVYKG HP
Sbjct: 73 KLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLPHNALGRQLFRKLKVYKGAEHP 132
Query: 225 HEAQQP 230
H AQQP
Sbjct: 133 HGAQQP 138
>sp|Q7V521|RL13_PROMM 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9313) GN=rplM PE=3 SV=1
Length = 150
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 101/131 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR+LF LKVY+GP HP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLKVYRGPEHP 132
Query: 225 HEAQQPIELPI 235
H AQ+P L +
Sbjct: 133 HSAQRPQTLQL 143
>sp|A2CC54|RL13_PROM3 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9303) GN=rplM PE=3 SV=1
Length = 150
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/131 (58%), Positives = 101/131 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP LGR+LF LKVY+GP HP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLKVYRGPEHP 132
Query: 225 HEAQQPIELPI 235
H AQ+P L +
Sbjct: 133 HSAQRPQTLQL 143
>sp|Q1XDJ6|RK13_PORYE 50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis
GN=rpl13 PE=3 SV=1
Length = 142
Score = 172 bits (437), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 100/125 (80%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ V+VSG K QK+Y
Sbjct: 15 WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLY 74
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEA 227
RRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG LGR+LFT LKVY GP HPH A
Sbjct: 75 RRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKGPLGRKLFTKLKVYSGPIHPHVA 134
Query: 228 QQPIE 232
Q+P E
Sbjct: 135 QKPQE 139
>sp|Q2S9X2|RL13_HAHCH 50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396)
GN=rplM PE=3 SV=1
Length = 142
Score = 164 bits (414), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 95/130 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYV+DATDK LGRL++ IA +RGK+ A YTP VD G Y++VVNAEKV V+G K K
Sbjct: 13 RDWYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVVNAEKVRVTGNKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y RH+G PGG+KE +FD+L PER+IE AV+GM+P+ LGR + LKVY HPH
Sbjct: 73 MYYRHTGYPGGLKEMSFDKLIQHAPERVIETAVKGMMPRNPLGRAMLKKLKVYASAEHPH 132
Query: 226 EAQQPIELPI 235
AQQPIEL I
Sbjct: 133 TAQQPIELKI 142
>sp|Q1QVF0|RL13_CHRSD 50S ribosomal protein L13 OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rplM PE=3 SV=1
Length = 142
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 95/128 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDATDK LGRLA+ IA +RGK+ YTP VD G Y++VVNAEKV V+G K K
Sbjct: 13 RDWYVVDATDKTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVVNAEKVRVTGNKAQAK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
Y RH+G PGG++ +F++L PER+IE AV+GMLPKG LGR +++ LKVY G HPH
Sbjct: 73 NYYRHTGYPGGLRSMSFEKLIDHAPERVIESAVKGMLPKGPLGRAMYSKLKVYAGAEHPH 132
Query: 226 EAQQPIEL 233
AQQP+EL
Sbjct: 133 AAQQPLEL 140
>sp|Q67JX6|RL13_SYMTH 50S ribosomal protein L13 OS=Symbiobacterium thermophilum (strain T
/ IAM 14863) GN=rplM PE=3 SV=1
Length = 143
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/137 (55%), Positives = 101/137 (73%)
Query: 99 ADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVS 158
A+ ++ ++ WYVVDA K LGRLAS +A +RGK+ T+TP VD G +VI+VNAEK+ V+
Sbjct: 7 ANPQNVERKWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVT 66
Query: 159 GKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVY 218
GKK T K+Y RHSG PGG K TF+Q+ R PER++E A++GMLP RLGR+++ LKVY
Sbjct: 67 GKKVTDKVYYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPHNRLGRQMYRKLKVY 126
Query: 219 KGPNHPHEAQQPIELPI 235
GP HPH AQ+P L +
Sbjct: 127 AGPEHPHAAQKPEPLEV 143
>sp|B4RXK9|RL13_ALTMD 50S ribosomal protein L13 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 94/130 (72%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDATDK LGRLAS IA+ +RGK+ YTP VD G Y+IV+NAEKVAV+G+K K
Sbjct: 13 RDWYVVDATDKTLGRLASEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVAVTGRKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y HSG PGG+KE F++L PE ++E AV+GMLPKG LGR +F +KVY G H H
Sbjct: 73 MYYAHSGYPGGLKETNFEKLIAHKPEMVLEKAVKGMLPKGPLGRAMFRKMKVYAGAEHSH 132
Query: 226 EAQQPIELPI 235
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>sp|A8GK03|RL13_SERP5 50S ribosomal protein L13 OS=Serratia proteamaculans (strain 568)
GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LKVY G H H
Sbjct: 73 VYYRHTGYVGGIKQATFEEMIARNPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGTEHTH 132
Query: 226 EAQQPIELPI 235
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>sp|A1JR94|RL13_YERE8 50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
IY RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR ++ LKVY G H H
Sbjct: 73 IYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKLKVYAGTEHNH 132
Query: 226 EAQQPIELPI 235
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>sp|Q5Z1I0|RL13_NOCFA 50S ribosomal protein L13 OS=Nocardia farcinica (strain IFM 10152)
GN=rplM PE=3 SV=1
Length = 147
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/144 (53%), Positives = 97/144 (67%), Gaps = 3/144 (2%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PKA D + WYV+DATD +LGRLA A +RGKN TY P VD G +VI++NA
Sbjct: 3 TYSPKAGD---VTRQWYVIDATDVVLGRLAVQAANLLRGKNKPTYAPHVDGGDFVIIINA 59
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
EKVA+SG KR K+ HSG PGG+K T Q+ PER++E AV+GM+PK +LG +
Sbjct: 60 EKVAISGNKRQDKLIHHHSGHPGGLKSRTVGQVLETRPERLVEKAVKGMIPKNKLGNAIA 119
Query: 213 THLKVYKGPNHPHEAQQPIELPIR 236
LKVY GPNHPH AQQP+ I+
Sbjct: 120 GKLKVYAGPNHPHAAQQPVPFEIK 143
>sp|A8AQC1|RL13_CITK8 50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 97/130 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K
Sbjct: 13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR +F LKVY G H H
Sbjct: 73 VYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNH 132
Query: 226 EAQQPIELPI 235
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>sp|C4ZI85|RL13_EUBR3 50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (405), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 95/126 (75%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA K LGRLAS +A +RGKN A +TP +D G YVIVVNA+KV V+GKK Q
Sbjct: 12 DRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQ 71
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP 224
KIY HS GGMKE T ++ ++ PER+IE+AV+GMLPKG LGR+++T L VY GP+H
Sbjct: 72 KIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKGPLGRQMYTKLFVYAGPDHK 131
Query: 225 HEAQQP 230
H AQ+P
Sbjct: 132 HAAQKP 137
>sp|B4EXL9|RL13_PROMH 50S ribosomal protein L13 OS=Proteus mirabilis (strain HI4320)
GN=rplM PE=3 SV=1
Length = 142
Score = 160 bits (404), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/130 (60%), Positives = 96/130 (73%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGHKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG LGR ++ LKVY G H H
Sbjct: 73 VYYRHTGHVGGIKQATFEEMIARSPERVIEIAVKGMLPKGPLGRAMYRKLKVYAGAEHNH 132
Query: 226 EAQQPIELPI 235
AQQP L I
Sbjct: 133 AAQQPQVLDI 142
>sp|A0QSP8|RL13_MYCS2 50S ribosomal protein L13 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rplM PE=1 SV=1
Length = 147
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 105/144 (72%), Gaps = 3/144 (2%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PKA D + ++WYV+DA+D +LGRLAS A +RGK+ T+TP+VD G +VIV+NA
Sbjct: 3 TYTPKAGD---TTRSWYVIDASDVVLGRLASAAATLLRGKHKPTFTPNVDGGDFVIVINA 59
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELF 212
+K+AVSG K T+K RHSG PGG+++ T +L + P R++E+A+ GMLP +LGR++
Sbjct: 60 DKIAVSGDKLTKKFAYRHSGYPGGLRKRTIGELLEKHPTRVVENAIIGMLPHNKLGRQIQ 119
Query: 213 THLKVYKGPNHPHEAQQPIELPIR 236
LKVY GP+HPH AQQPI I+
Sbjct: 120 KKLKVYAGPDHPHAAQQPIPFEIK 143
>sp|A5IAL7|RL13_LEGPC 50S ribosomal protein L13 OS=Legionella pneumophila (strain Corby)
GN=rplM PE=3 SV=1
Length = 144
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 98/132 (74%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVDA++K+LGRLA+ IA +RGK+ A YTP VD G Y+IV NAEKV V+G+K K
Sbjct: 13 RDWFVVDASEKVLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVTNAEKVVVTGRKFKNK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPH 225
+Y H+G PGG+K +F++LQ + P +IIE AV+GMLPK LGRE++ LKVY G HPH
Sbjct: 73 MYHHHTGFPGGIKSASFEKLQDKNPTKIIELAVKGMLPKNPLGREMYRKLKVYAGSEHPH 132
Query: 226 EAQQPIELPIRD 237
AQQP +L I +
Sbjct: 133 TAQQPKQLEIEE 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,813,630
Number of Sequences: 539616
Number of extensions: 3774366
Number of successful extensions: 14074
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 12743
Number of HSP's gapped (non-prelim): 1143
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)