Query         026067
Match_columns 244
No_of_seqs    138 out of 1112
Neff          4.1 
Searched_HMMs 46136
Date          Fri Mar 29 03:20:54 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026067hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 CHL00159 rpl13 ribosomal prote 100.0 7.2E-63 1.6E-67  412.5  14.6  143   90-235     1-143 (143)
  2 PRK09216 rplM 50S ribosomal pr 100.0 1.3E-61 2.8E-66  405.2  13.6  143   91-236     1-143 (144)
  3 TIGR01066 rplM_bact ribosomal  100.0 1.8E-59 3.9E-64  390.6  13.5  132  104-235     9-140 (140)
  4 COG0102 RplM Ribosomal protein 100.0 1.4E-59   3E-64  394.2  12.8  144   91-237     1-145 (148)
  5 PLN00205 ribisomal protein L13 100.0 7.5E-56 1.6E-60  384.7  14.2  135  103-237    12-146 (191)
  6 PF00572 Ribosomal_L13:  Riboso 100.0 4.1E-56 8.8E-61  365.1   8.7  127  108-234     1-127 (128)
  7 cd00392 Ribosomal_L13 Ribosoma 100.0 4.1E-53 8.9E-58  341.5  11.3  114  108-221     1-114 (114)
  8 KOG3203 Mitochondrial/chloropl 100.0 1.1E-53 2.3E-58  360.8   7.4  141  104-244    19-165 (165)
  9 TIGR01077 L13_A_E ribosomal pr 100.0 1.4E-42   3E-47  289.9  10.8  117  109-237     1-118 (142)
 10 PRK06394 rpl13p 50S ribosomal  100.0 6.5E-41 1.4E-45  281.0  11.8  117  107-238     3-124 (146)
 11 PTZ00068 60S ribosomal protein 100.0 3.5E-40 7.6E-45  289.0  10.0  115  106-237     3-123 (202)
 12 KOG3204 60S ribosomal protein   99.7 2.2E-18 4.8E-23  150.8   5.3  117  105-240     4-121 (197)
 13 PRK03759 isopentenyl-diphospha  49.8      23 0.00049   30.1   3.8   46  105-158     5-51  (184)
 14 PRK05461 apaG CO2+/MG2+ efflux  49.0      19 0.00041   30.0   3.1   49   56-117     5-61  (127)
 15 PRK15393 NUDIX hydrolase YfcD;  44.6      17 0.00037   30.9   2.3   44  105-157     9-53  (180)
 16 PF12396 DUF3659:  Protein of u  42.2     7.5 0.00016   29.0  -0.3   29  105-133    10-38  (64)
 17 COG2947 Uncharacterized conser  36.3     9.7 0.00021   33.1  -0.5   14   72-85     90-103 (156)
 18 COG2967 ApaG Uncharacterized p  35.8      20 0.00044   30.2   1.3   14  104-117    47-60  (126)
 19 PLN00112 malate dehydrogenase   35.7      72  0.0016   31.8   5.3   88   55-153    46-142 (444)
 20 KOG2255 Peptidyl-tRNA hydrolas  35.1      35 0.00076   31.3   2.8   87   57-160    22-137 (224)
 21 PF00436 SSB:  Single-strand bi  33.0      44 0.00095   24.9   2.7   29  106-150    47-75  (104)
 22 TIGR02150 IPP_isom_1 isopenten  32.4      29 0.00063   28.7   1.7   41  109-157     2-43  (158)
 23 cd02885 IPP_Isomerase Isopente  27.9 1.6E+02  0.0036   24.2   5.5   44  106-157     2-46  (165)
 24 cd04496 SSB_OBF SSB_OBF: A sub  27.7      62  0.0013   23.7   2.7   30  105-150    42-71  (100)
 25 COG0629 Ssb Single-stranded DN  25.2      64  0.0014   27.3   2.6   28  107-150    51-78  (167)
 26 KOG3974 Predicted sugar kinase  24.4      39 0.00084   32.3   1.2   34  106-141   132-165 (306)
 27 PRK07274 single-stranded DNA-b  24.2      96  0.0021   25.4   3.4   29  106-150    46-74  (131)
 28 PRK05853 hypothetical protein;  23.8      73  0.0016   27.6   2.7   28  107-150    43-70  (161)
 29 PF01926 MMR_HSR1:  50S ribosom  22.8 1.7E+02  0.0038   21.9   4.4   29  105-135    81-109 (116)
 30 PRK06752 single-stranded DNA-b  22.4      77  0.0017   25.0   2.4   28  107-150    47-74  (112)
 31 COG1635 THI4 Ribulose 1,5-bisp  22.3      35 0.00076   32.0   0.5   49  107-156   167-218 (262)
 32 PLN02399 phospholipid hydroper  21.6      90   0.002   28.3   3.0   29   20-48     25-55  (236)
 33 PLN02289 ribulose-bisphosphate  21.2   1E+02  0.0022   27.5   3.1   11  120-130    80-90  (176)
 34 PRK07772 single-stranded DNA-b  21.1      81  0.0017   27.9   2.5   28  107-150    53-80  (186)
 35 KOG2415 Electron transfer flav  20.4      46 0.00099   34.1   0.9   64   76-150   187-250 (621)
 36 PRK08182 single-stranded DNA-b  20.2      96  0.0021   26.1   2.7   28  107-150    54-81  (148)

No 1  
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=100.00  E-value=7.2e-63  Score=412.50  Aligned_cols=143  Identities=61%  Similarity=1.054  Sum_probs=139.5

Q ss_pred             cceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeee
Q 026067           90 WNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRR  169 (244)
Q Consensus        90 ~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~  169 (244)
                      ||+||.++..+   .+|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||.+|.|++
T Consensus         1 ~~~t~~~~~~~---~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~   77 (143)
T CHL00159          1 MNKTFIPSKDY---KNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVR   77 (143)
T ss_pred             CCccccCCchh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEe
Confidence            57899999888   599999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067          170 HSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI  235 (244)
Q Consensus       170 HtgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i  235 (244)
                      |||||||+|+++++++++++|++||++||+||||||.+||++|+||+||+|.+|||++|+|+.+++
T Consensus        78 htg~pGg~k~~~~~~~~~r~P~~il~~aV~gMLPkn~lgr~~~~rLkvy~G~~hph~aq~p~~~~~  143 (143)
T CHL00159         78 HSGRPGGLKIETFEELQNRLPNRIIEKAVKGMLPKGPLGRKLFTKLKVYKGESHPHVAQKPIKINI  143 (143)
T ss_pred             cCCCCCCcccccHHHHhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCccccCCeecCC
Confidence            999999999999999999999999999999999999999999999999999999999999998864


No 2  
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=100.00  E-value=1.3e-61  Score=405.17  Aligned_cols=143  Identities=57%  Similarity=0.953  Sum_probs=139.5

Q ss_pred             ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067           91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH  170 (244)
Q Consensus        91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H  170 (244)
                      |+||+++..+   .+++||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||.+|.|++|
T Consensus         1 m~t~~~~~~~---~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~h   77 (144)
T PRK09216          1 MKTFSAKPAE---VERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYRH   77 (144)
T ss_pred             CCcccCChhh---cCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEEe
Confidence            4799999888   5899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccCHHHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeeccc
Q 026067          171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIR  236 (244)
Q Consensus       171 tgypGglk~~t~~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~  236 (244)
                      ||||||+++++++++++++|++||++|||||||||.+|+++|+||+||+|.+|||++|+|+.+++.
T Consensus        78 tg~pGglk~~~~~~~~~r~P~~il~~aVrgMLPkn~lgr~~~~rLkvy~G~~hp~~~q~p~~~~~~  143 (144)
T PRK09216         78 SGYPGGLKEITFGELLAKKPERVIEKAVKGMLPKNPLGRAMFKKLKVYAGAEHPHAAQQPEVLEIK  143 (144)
T ss_pred             cccCCCCEEecHHHHhhhCHHHHHHHHHHhcCCCCccHHHHHhCcEEeCCCCCCccccCCEecccC
Confidence            999999999999999999999999999999999999999999999999999999999999999875


No 3  
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=100.00  E-value=1.8e-59  Score=390.63  Aligned_cols=132  Identities=63%  Similarity=1.054  Sum_probs=129.8

Q ss_pred             ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHH
Q 026067          104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD  183 (244)
Q Consensus       104 ~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~  183 (244)
                      ++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||.+|.|++|||||||+++++++
T Consensus         9 ~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k~~~~~   88 (140)
T TIGR01066         9 KKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLKSRTFE   88 (140)
T ss_pred             hcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEEEcccCCccccccHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecc
Q 026067          184 QLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPI  235 (244)
Q Consensus       184 ~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i  235 (244)
                      ++++++|++||++|||||||||.+|+++|+||+||+|.+|||++|+|+.+++
T Consensus        89 ~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkvy~G~~hp~~~q~p~~~~~  140 (140)
T TIGR01066        89 EMIARKPERVLEHAVKGMLPKNRLGRKLFKKLKVYAGSEHPHEAQKPIVLDI  140 (140)
T ss_pred             HhhhcCHHHHHHHHHHhcCCCCccHHHHHhCeEEeCCCCCChhhcCCeecCC
Confidence            9999999999999999999999999999999999999999999999998864


No 4  
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=1.4e-59  Score=394.16  Aligned_cols=144  Identities=55%  Similarity=0.880  Sum_probs=138.0

Q ss_pred             ceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeec
Q 026067           91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH  170 (244)
Q Consensus        91 ~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~H  170 (244)
                      |+|+.++.++   .+++||||||+|++||||||.||++|||||||+||||+||||+|||||||||+|||+|..+|.||+|
T Consensus         1 ~~t~~~k~~~---~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~h   77 (148)
T COG0102           1 MKTFTAKPSE---VERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYRH   77 (148)
T ss_pred             CceeccCccc---ccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEEe
Confidence            5789999988   5999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccCHHHHhh-cChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067          171 SGRPGGMKEETFDQLQH-RIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD  237 (244)
Q Consensus       171 tgypGglk~~t~~~l~~-r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~  237 (244)
                      ++||||++..++++++. |.|++||++||+||||||.+||++|+||+||.|.+|||.+|+|+.+.++.
T Consensus        78 s~~~gglk~~t~~~~~~~r~P~ri~~~AVrGMLPk~~lGr~~~krLkVy~G~~h~~~aq~p~~l~~~~  145 (148)
T COG0102          78 SGYPGGLKNPTRGGPLAPRRPERILERAVRGMLPKNPLGRAALKRLKVYAGIPHPHEAQKPEALELKL  145 (148)
T ss_pred             eccCCcccccccccccccCCHHHHHHHHHhccCCCChhHHHHHhCceEecCCCCccccccchhhhhhc
Confidence            99999999999966666 99999999999999999999999999999999999999999999987754


No 5  
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=100.00  E-value=7.5e-56  Score=384.72  Aligned_cols=135  Identities=35%  Similarity=0.600  Sum_probs=130.5

Q ss_pred             cccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCH
Q 026067          103 HSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETF  182 (244)
Q Consensus       103 ~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~  182 (244)
                      +..++||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||.+|.|++|||||||++++++
T Consensus        12 ~~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~~   91 (191)
T PLN00205         12 LEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERSL   91 (191)
T ss_pred             cCCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCCcccccH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067          183 DQLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD  237 (244)
Q Consensus       183 ~~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~  237 (244)
                      +++++++|++||++||+||||+|.+|+.+|+||+||+|.+|||++|+|+.+++--
T Consensus        92 ~~~~~r~P~~Il~kAVrGMLPkn~lr~~~~krLkVY~G~~hp~~~q~p~~~~~p~  146 (191)
T PLN00205         92 KDQMAKDPTEVIRKAVLRMLPRNRLRDDRDRKLRIFAGSEHPFGDKPLEPFVMPP  146 (191)
T ss_pred             HHHhccCHHHHHHHHHHhcCCCCchHHHHHhCCEEECCCCCChhccCCeEecCCh
Confidence            9999999999999999999999999999999999999999999999998886433


No 6  
>PF00572 Ribosomal_L13:  Ribosomal protein L13;  InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.  Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=100.00  E-value=4.1e-56  Score=365.06  Aligned_cols=127  Identities=56%  Similarity=0.943  Sum_probs=125.8

Q ss_pred             EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhh
Q 026067          108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH  187 (244)
Q Consensus       108 W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~  187 (244)
                      |+||||+||+||||||.||++|+|||||+|||+.||||+|||||||+|++||+||.+|.|++|+|||||+++.+++++++
T Consensus         1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~   80 (128)
T PF00572_consen    1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHE   80 (128)
T ss_dssp             EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHC
T ss_pred             CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHccCCCCcchHHHhccceeecCCCCCccCCCCeeec
Q 026067          188 RIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHPHEAQQPIELP  234 (244)
Q Consensus       188 r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hph~aqkp~~l~  234 (244)
                      ++|++||++||+||||+|.+|+++|+||+||+|.+|||++|+|++|+
T Consensus        81 ~~P~~i~~~aVrgMLP~n~~g~~~l~rL~vy~g~~hp~~~~~~~~~~  127 (128)
T PF00572_consen   81 KDPSRILKRAVRGMLPKNKLGREALKRLKVYPGEPHPHAAQKPVVLE  127 (128)
T ss_dssp             SSHHHHHHHHHHTTSTTSHHHHHHHTTEEEESSSSCSTTSSSCBEEE
T ss_pred             cCHHHHHHHHHHHHCCCChhhhHHhhceEEECCCCCChhccCCEeCC
Confidence            99999999999999999999999999999999999999999999987


No 7  
>cd00392 Ribosomal_L13 Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site.  It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer.  L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=100.00  E-value=4.1e-53  Score=341.54  Aligned_cols=114  Identities=56%  Similarity=0.955  Sum_probs=113.0

Q ss_pred             EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhh
Q 026067          108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQH  187 (244)
Q Consensus       108 W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~  187 (244)
                      |+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||.+|.|++|++||||+++.+++++++
T Consensus         1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~   80 (114)
T cd00392           1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHP   80 (114)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHHccCCCCcchHHHhccceeecCC
Q 026067          188 RIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGP  221 (244)
Q Consensus       188 r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~  221 (244)
                      ++|++||++||+||||||.+|+++|+||+||+|.
T Consensus        81 ~~P~~il~~aV~gMLPkn~~g~~~l~rLkvy~g~  114 (114)
T cd00392          81 RAPERILKRAVRGMLPKNKLGRAALKRLKVYEGA  114 (114)
T ss_pred             hCHHHHHHHHHHhcCCCChhHHHHHhCcEEeCCC
Confidence            9999999999999999999999999999999984


No 8  
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=1.1e-53  Score=360.78  Aligned_cols=141  Identities=48%  Similarity=0.727  Sum_probs=136.7

Q ss_pred             ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHH
Q 026067          104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFD  183 (244)
Q Consensus       104 ~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~  183 (244)
                      ++|.|++|||++|+||||||.||..|+|||||+|||+.||||+|||+||++|.+||+||++|+|++|+|||||++..++.
T Consensus        19 faRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~lk~~~~~   98 (165)
T KOG3203|consen   19 FARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGGLKQTTAD   98 (165)
T ss_pred             HhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhhcCCCCCchhhhHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcChHHHHHHHHHccCCCCcchHHHhccceeecCCCCC------ccCCCCeeeccccceeeccC
Q 026067          184 QLQHRIPERIIEHAVRGMLPKGRLGRELFTHLKVYKGPNHP------HEAQQPIELPIRDKRIQKQR  244 (244)
Q Consensus       184 ~l~~r~P~~Ilk~AVrGMLPKn~lgr~~lkrLkVY~G~~hp------h~aqkp~~l~i~~~ri~~~~  244 (244)
                      +++.++|++|+++||+||||||.|||..|+|||||+|++||      +++++|..++.+.+++..++
T Consensus        99 q~~~rdp~~Iv~~AV~gMLPkN~Lrr~~~~rL~lf~g~e~p~~~Ni~~~~~q~~~vp~r~~e~~~~~  165 (165)
T KOG3203|consen   99 QLADRDPCRIVRLAVYGMLPKNLLRRRRMQRLHLFPGEEHPEKVNIGSELHQPQGVPKRLDEYTFEE  165 (165)
T ss_pred             HHhhhCHHHHHHHHHHhhCccchHHHHHhheeeccCCccCchhhhhHHHhccccCCCchhHHHhhcC
Confidence            99999999999999999999999999999999999999999      99999999999998887653


No 9  
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=100.00  E-value=1.4e-42  Score=289.86  Aligned_cols=117  Identities=34%  Similarity=0.485  Sum_probs=109.3

Q ss_pred             EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHHHhhc
Q 026067          109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR  188 (244)
Q Consensus       109 ~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~l~~r  188 (244)
                      +||||+||+||||||.||++|+            |||+|||||||+|++||+|+.+|.||+|+.++|..+..++++++++
T Consensus         1 ivIDA~~~vlGRLAs~IA~~L~------------~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r   68 (142)
T TIGR01077         1 TVIDGSGHILGRLASVVAKQLL------------NGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPR   68 (142)
T ss_pred             CEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhc
Confidence            5899999999999999999998            9999999999999999999999999999965555454489999999


Q ss_pred             ChHHHHHHHHHccCCCC-cchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067          189 IPERIIEHAVRGMLPKG-RLGRELFTHLKVYKGPNHPHEAQQPIELPIRD  237 (244)
Q Consensus       189 ~P~~Ilk~AVrGMLPKn-~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~  237 (244)
                      +|++||++||+|||||| .+|+++|+|||||+|.+|||++|+++.++..+
T Consensus        69 ~P~~il~~aVrGMLPk~~~~Gr~~~krLkvy~G~~h~~~~qk~~~~~~a~  118 (142)
T TIGR01077        69 APSRIFRRTVRGMLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL  118 (142)
T ss_pred             CHHHHHHHHHHHhCCCCChhHHHHHhCcEEecCCCCCccccCccccChhh
Confidence            99999999999999996 89999999999999999999999999999764


No 10 
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=100.00  E-value=6.5e-41  Score=281.00  Aligned_cols=117  Identities=34%  Similarity=0.477  Sum_probs=106.0

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCccc----CH
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE----TF  182 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~----t~  182 (244)
                      +-|||||+||+|||||+.||++|+            +||+||||||++|++||+|+.+  |++|++|+ |++..    ++
T Consensus         3 ~~~viDA~~~vlGRLAs~IA~~L~------------~Gd~VVViNa~kv~~tG~K~~~--~~~y~~~~-~~k~~~np~~~   67 (146)
T PRK06394          3 AMVVIDAEGQILGRLASYVAKRLL------------EGEEVVIVNAEKAVITGNRERV--IEKYKQRR-ERGSHYNPYRN   67 (146)
T ss_pred             ccEEEECCCCchHHHHHHHHHHHh------------CCCEEEEEechheEecCchhhh--eeeEeCCC-CCcccCCCCCh
Confidence            358999999999999999999999            6999999999999999999876  55555555 45555    78


Q ss_pred             HHHhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeeccccc
Q 026067          183 DQLQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDK  238 (244)
Q Consensus       183 ~~l~~r~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~  238 (244)
                      +++++++|++||++||+|||| ||.+|+.+|+||+||+|.+|||++|+|+.+++.+.
T Consensus        68 ~~~~~r~P~~il~~AV~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~qkp~~~~~a~~  124 (146)
T PRK06394         68 GPKYPRRPDRIFKRTIRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEADL  124 (146)
T ss_pred             HHhhhcCHHHHHHHHHHhcCCCCChhHHHHHhCcEEecCCCCCcccCCCEEecHHHH
Confidence            999999999999999999999 89999999999999999999999999999997654


No 11 
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=100.00  E-value=3.5e-40  Score=289.02  Aligned_cols=115  Identities=30%  Similarity=0.497  Sum_probs=108.0

Q ss_pred             ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccC----
Q 026067          106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEET----  181 (244)
Q Consensus       106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t----  181 (244)
                      .+|+||||+|++||||||.||+.|+            +||+|||||||+|.|||+++.+|.||+|     +++..+    
T Consensus         3 ~~w~vIDA~g~vLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iTG~k~~~K~~y~~-----~lk~~~~~nP   65 (202)
T PTZ00068          3 KKVIVIDCKGHLLGRLASVVAKELL------------LGQKIVVVRCEDLNISGSLFRNKVKYEE-----FLRKRMNTNP   65 (202)
T ss_pred             CceEEEECCCCcHHHHHHHHHHHHh------------CCCEEEEEecceeEeecchhhheeeeEe-----eeEeeccCCC
Confidence            4799999999999999999999999            9999999999999999999999999999     344444    


Q ss_pred             -HHHHhhcChHHHHHHHHHccCCC-CcchHHHhccceeecCCCCCccCCCCeeecccc
Q 026067          182 -FDQLQHRIPERIIEHAVRGMLPK-GRLGRELFTHLKVYKGPNHPHEAQQPIELPIRD  237 (244)
Q Consensus       182 -~~~l~~r~P~~Ilk~AVrGMLPK-n~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~  237 (244)
                       .+++++|.|++||++|||||||| |.+|+++|+||+||+|.+|||++++.+++|-.+
T Consensus        66 ~~g~~~~r~P~~Il~raVrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vvp~A~  123 (202)
T PTZ00068         66 RRGPFHHRAPSDIFWRTVRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSAL  123 (202)
T ss_pred             CcchhcccCHHHHHHHHHhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccccchh
Confidence             58999999999999999999996 899999999999999999999999999999766


No 12 
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=99.73  E-value=2.2e-18  Score=150.75  Aligned_cols=117  Identities=31%  Similarity=0.564  Sum_probs=102.1

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCccccceeeeeccCCCCCCcccCHHH
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ  184 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~K~~~K~Y~~HtgypGglk~~t~~~  184 (244)
                      ..+-.+||+.|+++||||+.+|+.|+            .|..|||+.||.|.++|+-+.+|.|-++.=   +    ..++
T Consensus         4 ~~~~~vidg~~hllGrlAa~vaK~ll------------~g~kvvvvr~E~i~isg~f~r~k~~lrk~~---~----~ng~   64 (197)
T KOG3204|consen    4 EVKLVVIDGRGHLLGRLAAIVAKQLL------------LGRKVVVVRCEEINISGNFYRNKLFLRKRL---N----RNGP   64 (197)
T ss_pred             eEEEeeccchhhhhhhHHHHHHHHHh------------cCCeEEEEEEeEEEEecceecchHHHhhhh---c----ccCc
Confidence            34568999999999999999999999            999999999999999999888886555421   1    1278


Q ss_pred             HhhcChHHHHHHHHHccCC-CCcchHHHhccceeecCCCCCccCCCCeeecccccee
Q 026067          185 LQHRIPERIIEHAVRGMLP-KGRLGRELFTHLKVYKGPNHPHEAQQPIELPIRDKRI  240 (244)
Q Consensus       185 l~~r~P~~Ilk~AVrGMLP-Kn~lgr~~lkrLkVY~G~~hph~aqkp~~l~i~~~ri  240 (244)
                      +|.+-|.+|++++|+||+| |.+.|+.++++|++|.|.++|++.|++..+|..-...
T Consensus        65 ~hfr~ps~i~~~~vrgm~~~kt~rg~aal~~l~~~eGip~~~dk~~r~v~p~a~~v~  121 (197)
T KOG3204|consen   65 FHFRAPSRILQKAVRGMYPHKTKRGRAALERLRVFEGIPPPYDKQKRLVVPVAFQVL  121 (197)
T ss_pred             chhhhHHHHHHHhhccccccCCCccHHHHHHHHHhCCCCChhhhcCCccCCcceeee
Confidence            9999999999999999999 5799999999999999999999999998888654433


No 13 
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=49.75  E-value=23  Score=30.05  Aligned_cols=46  Identities=11%  Similarity=0.108  Sum_probs=32.0

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeeec
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAVS  158 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAe-kI~vT  158 (244)
                      ...|.|+|+.|..+|+.....+....|.    |++.+    .|+|+|.+ +|.+.
T Consensus         5 ~E~~~~vd~~~~~~g~~~r~~~~~~~~~----~h~av----~v~i~~~~g~vLL~   51 (184)
T PRK03759          5 TELVVLLDEQGVPTGTAEKAAAHTADTP----LHLAF----SCYLFDADGRLLVT   51 (184)
T ss_pred             ceeEEEECCCCCCcccccHHHHHhcCCC----eeeEE----EEEEEcCCCeEEEE
Confidence            4569999999999999888888644444    22222    47788864 56553


No 14 
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=48.96  E-value=19  Score=29.99  Aligned_cols=49  Identities=16%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             ccCceEEEeccccccccC-----cchhhhh---hhcccCCcccceeccCCCCCcccccceEEEEeCCCCC
Q 026067           56 TKRSFKVRCCQNLSLVPD-----NQRWMFE---QSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKI  117 (244)
Q Consensus        56 ~~~~~~v~c~~~~~~v~~-----~~r~~~~---~~e~~g~~~~~kt~~~k~~~~~~~~r~W~IIDA~gqi  117 (244)
                      .+.+++|+|.-  .++||     +.||+|.   .+|-.|+.           .+.-..|.|.|.|+.|++
T Consensus         5 ~t~gI~V~V~~--~y~~e~S~p~~~~y~f~Y~ItI~N~~~~-----------~vQL~~R~W~I~d~~g~~   61 (127)
T PRK05461          5 VTYGIEVSVQP--RYLEEQSDPEEGRYVFAYTITIENLGRV-----------PVQLLSRHWLITDANGRV   61 (127)
T ss_pred             ccCCEEEEEEE--EECcccCCCcCCEEEEEEEEEEEECCCC-----------CEEEEeeeEEEEECCCCE
Confidence            36778888876  55664     5566542   23322211           111257999999998763


No 15 
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=44.55  E-value=17  Score=30.88  Aligned_cols=44  Identities=11%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV  157 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAe-kI~v  157 (244)
                      ..-|.|+|..|+++|+.....+.. .|.    ++    .+..|+|+|.+ +|.+
T Consensus         9 ~e~~~~~d~~~~~~g~~~~~~~~~-~~~----~h----~~~~v~v~~~~g~iLL   53 (180)
T PRK15393          9 TEWVDIVNENNEVIAQASREQMRA-QCL----RH----RATYIVVHDGMGKILV   53 (180)
T ss_pred             ceEEEEECCCCCEeeEEEHHHHhh-CCC----ce----EEEEEEEECCCCeEEE
Confidence            456999999999999996555553 222    12    34478888874 4544


No 16 
>PF12396 DUF3659:  Protein of unknown function (DUF3659) ;  InterPro: IPR022124  This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length. 
Probab=42.16  E-value=7.5  Score=28.97  Aligned_cols=29  Identities=28%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCC
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKN  133 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKh  133 (244)
                      ++.=.|+|.+|+++|||..--++.|.|+-
T Consensus        10 nk~G~V~d~~G~~vG~vveGd~k~L~G~~   38 (64)
T PF12396_consen   10 NKDGNVVDDDGNVVGRVVEGDPKKLVGKK   38 (64)
T ss_pred             CCCCeEECCCCCEEEEEecCCHHHhcCCc
Confidence            45557999999999999999999999874


No 17 
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=36.28  E-value=9.7  Score=33.14  Aligned_cols=14  Identities=21%  Similarity=0.631  Sum_probs=11.9

Q ss_pred             cCcchhhhhhhccc
Q 026067           72 PDNQRWMFEQSEVN   85 (244)
Q Consensus        72 ~~~~r~~~~~~e~~   85 (244)
                      ||+|||+|+.+.++
T Consensus        90 ~e~pRW~~Vdv~~v  103 (156)
T COG2947          90 PEDPRWYCVDVRFV  103 (156)
T ss_pred             cCCCCeeEEeeHHH
Confidence            47999999999765


No 18 
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=35.83  E-value=20  Score=30.23  Aligned_cols=14  Identities=14%  Similarity=0.669  Sum_probs=12.3

Q ss_pred             ccceEEEEeCCCCC
Q 026067          104 SDKTWYVVDATDKI  117 (244)
Q Consensus       104 ~~r~W~IIDA~gqi  117 (244)
                      ..|-|+|=||.|++
T Consensus        47 lsR~W~ITd~~g~v   60 (126)
T COG2967          47 LSRYWLITDGNGRV   60 (126)
T ss_pred             eeeEEEEecCCCcE
Confidence            47999999999985


No 19 
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=35.72  E-value=72  Score=31.77  Aligned_cols=88  Identities=16%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             cccCceEEEecccccc-ccC-cchhh-hhhhcccCCcccceeccCCCCCcccccceE------EEEeCCCCCchhhHHHH
Q 026067           55 NTKRSFKVRCCQNLSL-VPD-NQRWM-FEQSEVNGPDIWNNTWYPKAADHRHSDKTW------YVVDATDKILGRLASTI  125 (244)
Q Consensus        55 ~~~~~~~v~c~~~~~~-v~~-~~r~~-~~~~e~~g~~~~~kt~~~k~~~~~~~~r~W------~IIDA~gqiLGRLAS~I  125 (244)
                      .....++|+|...... +|. .+.-- -...|-.|  +|--||-.+.++   ..+.|      .||-|.|    .+++.+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~KV~IIGAaG----~VG~~~  116 (444)
T PLN00112         46 RRATNARISCSVNQASQAPAAVQEKGVKTKKECYG--VFCLTYDLKAEE---ETKSWKKLINVAVSGAAG----MISNHL  116 (444)
T ss_pred             ccccccceeeccccccCCCccccccccccCCCceE--EEEEEEecccch---hhhcCCCCeEEEEECCCc----HHHHHH
Confidence            3466788888776431 111 11100 11122344  455688788777   36667      5666545    466677


Q ss_pred             HHHHhcCCCCccCCCCCCCCEEEEEecc
Q 026067          126 AIHIRGKNLATYTPSVDMGAYVIVVNAE  153 (244)
Q Consensus       126 Ak~LrGKhKp~ytP~~d~GD~VIVINAe  153 (244)
                      |..|.-+  =.|-|+.+.-|++++|...
T Consensus       117 A~~L~~~--~v~g~~~~i~~eLvliD~~  142 (444)
T PLN00112        117 LFKLASG--EVFGPDQPIALKLLGSERS  142 (444)
T ss_pred             HHHHHhc--ccccCCCCcccEEEEEcCC
Confidence            7666522  2355555666778877543


No 20 
>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=35.07  E-value=35  Score=31.29  Aligned_cols=87  Identities=21%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             cCceEEEeccccccccCcchhhhhhhcccCCcc---------------------cceeccCCCCCcc-cccceEE-----
Q 026067           57 KRSFKVRCCQNLSLVPDNQRWMFEQSEVNGPDI---------------------WNNTWYPKAADHR-HSDKTWY-----  109 (244)
Q Consensus        57 ~~~~~v~c~~~~~~v~~~~r~~~~~~e~~g~~~---------------------~~kt~~~k~~~~~-~~~r~W~-----  109 (244)
                      ...|+|+|.-+.  .+.+-|||-+.+---|+.+                     -+.|+.+|+..-. -+...-+     
T Consensus        22 ~qr~~~~c~l~~--~~~~k~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp   99 (224)
T KOG2255|consen   22 KQRFSVHCDLKP--RVSIKPWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRP   99 (224)
T ss_pred             ccchheeeeccc--CCCCCceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCc
Confidence            566888998754  3355589988876555433                     3456655433211 1112223     


Q ss_pred             --EEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecceeeecCc
Q 026067          110 --VVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGK  160 (244)
Q Consensus       110 --IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAekI~vTG~  160 (244)
                        +.++.|.-+|++|+.-+..++               +|+||--|--.-.|+
T Consensus       100 ~qymN~SgesV~kva~~y~i~~~---------------~ivvIhDEl~l~~Gk  137 (224)
T KOG2255|consen  100 QQYMNFSGESVGKVAALYKIPLR---------------HIVVIHDELELPLGK  137 (224)
T ss_pred             HhhhccccchhhhhHHhhcchhe---------------eEEEEeccccCcCce
Confidence              345788899999999998887               888888776555554


No 21 
>PF00436 SSB:  Single-strand binding protein family;  InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=33.02  E-value=44  Score=24.90  Aligned_cols=29  Identities=34%  Similarity=0.500  Sum_probs=20.2

Q ss_pred             ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      ..|+=|-+    -|.+|..++.+|.            .||.|.|.
T Consensus        47 ~~~~~v~~----~g~~A~~~~~~l~------------kG~~V~V~   75 (104)
T PF00436_consen   47 TDWINVVA----WGKLAENVAEYLK------------KGDRVYVE   75 (104)
T ss_dssp             EEEEEEEE----EHHHHHHHHHH--------------TT-EEEEE
T ss_pred             eEEEEEEe----eeecccccceEEc------------CCCEEEEE
Confidence            45776665    4889999999998            99987765


No 22 
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=32.37  E-value=29  Score=28.69  Aligned_cols=41  Identities=17%  Similarity=0.176  Sum_probs=29.0

Q ss_pred             EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026067          109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV  157 (244)
Q Consensus       109 ~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAe-kI~v  157 (244)
                      .|+|..|+.+|+.....+....|-.    |    .+-.|+|+|.+ +|.+
T Consensus         2 ~~~d~~~~~~g~~~r~~~~~~~g~~----h----~~v~v~v~~~~g~vLl   43 (158)
T TIGR02150         2 ILVDENDNPIGTASKAEVHLQETPL----H----RAFSVFLFNEEGQLLL   43 (158)
T ss_pred             EEECCCCCEeeeeeHHHhhhcCCCe----E----EEEEEEEEcCCCeEEE
Confidence            5899999999998888776544432    2    23358888875 5555


No 23 
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=27.88  E-value=1.6e+02  Score=24.19  Aligned_cols=44  Identities=16%  Similarity=0.133  Sum_probs=27.8

Q ss_pred             ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEecc-eeee
Q 026067          106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV  157 (244)
Q Consensus       106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVINAe-kI~v  157 (244)
                      ..|-|+|..|+++|+-.-..+....+-    |+    ..-.|+|+|.+ +|.+
T Consensus         2 e~~~~~d~~~~~~g~~~r~~~~~~~~~----~~----~~v~v~i~~~~~~iLl   46 (165)
T cd02885           2 ELVILVDEDDNPIGTAEKLEAHLKGTL----LH----RAFSVFLFNSKGRLLL   46 (165)
T ss_pred             cEEEEECCCCCCccccCHHHHhhcCCc----ce----eEEEEEEEcCCCcEEE
Confidence            468899999999998666666544333    11    12247778875 4444


No 24 
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=27.70  E-value=62  Score=23.74  Aligned_cols=30  Identities=33%  Similarity=0.482  Sum_probs=23.5

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      ...|+=|-+-    |.+|..+++.|+            .||.|+|.
T Consensus        42 ~~~~~~v~~~----g~~a~~~~~~~~------------kG~~V~v~   71 (100)
T cd04496          42 ETDWIRVVAF----GKLAENAAKYLK------------KGDLVYVE   71 (100)
T ss_pred             ccEEEEEEEE----hHHHHHHHHHhC------------CCCEEEEE
Confidence            4467777654    459999999998            99998875


No 25 
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=25.24  E-value=64  Score=27.28  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=22.9

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      .|+=|-    +-|++|..++.+|+            .|+.|+|.
T Consensus        51 ~~~~vv----~wgk~Ae~~~~yl~------------KG~~V~Ve   78 (167)
T COG0629          51 DWIRVV----IWGKLAENAAEYLK------------KGSLVYVE   78 (167)
T ss_pred             ceEEEE----EehHHHHHHHHHhc------------CCCEEEEE
Confidence            576665    46889999999998            89998875


No 26 
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=24.36  E-value=39  Score=32.27  Aligned_cols=34  Identities=26%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCC
Q 026067          106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSV  141 (244)
Q Consensus       106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~  141 (244)
                      +.=+||||+|.-|  ++....+++.|-++.+.|||+
T Consensus       132 dvP~VIDaDGL~L--v~q~~e~l~~~~~~viLTPNv  165 (306)
T KOG3974|consen  132 DVPLVIDADGLWL--VEQLPERLIGGYPKVILTPNV  165 (306)
T ss_pred             CCcEEEcCCceEe--hhhchhhhhccCceeeeCCcH
Confidence            3469999999644  677778899999999999996


No 27 
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=24.22  E-value=96  Score=25.39  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=23.1

Q ss_pred             ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       106 r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      -.||-|-+    -|++|..++.+|.            .|+.|.|-
T Consensus        46 t~w~~v~~----fg~~Ae~v~~~l~------------KG~~V~V~   74 (131)
T PRK07274         46 ADFINVVL----WGKLAETLASYAS------------KGSLISID   74 (131)
T ss_pred             EEEEEEEE----ehHHHHHHHHHcC------------CCCEEEEE
Confidence            36887765    4789999999998            89887764


No 28 
>PRK05853 hypothetical protein; Validated
Probab=23.84  E-value=73  Score=27.55  Aligned_cols=28  Identities=36%  Similarity=0.521  Sum_probs=22.6

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      .|+-|-    +-|++|..++++|.            .|+.|+|.
T Consensus        43 ~wi~V~----~wg~lAe~v~~~L~------------KG~~V~V~   70 (161)
T PRK05853         43 LFITVN----CWGRLVTGVGAALG------------KGAPVIVV   70 (161)
T ss_pred             cEEEEE----EEhHHHHHHHHHcC------------CCCEEEEE
Confidence            476554    56789999999998            89998886


No 29 
>PF01926 MMR_HSR1:  50S ribosome-binding GTPase;  InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=22.83  E-value=1.7e+02  Score=21.93  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=17.7

Q ss_pred             cceEEEEeCCCCCchhhHHHHHHHHhcCCCC
Q 026067          105 DKTWYVVDATDKILGRLASTIAIHIRGKNLA  135 (244)
Q Consensus       105 ~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp  135 (244)
                      .--+|+||++. .+-.-...+...|+ .++|
T Consensus        81 d~ii~vv~~~~-~~~~~~~~~~~~l~-~~~~  109 (116)
T PF01926_consen   81 DLIIYVVDASN-PITEDDKNILRELK-NKKP  109 (116)
T ss_dssp             SEEEEEEETTS-HSHHHHHHHHHHHH-TTSE
T ss_pred             CEEEEEEECCC-CCCHHHHHHHHHHh-cCCC
Confidence            34789999877 33344456666675 4343


No 30 
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=22.43  E-value=77  Score=25.03  Aligned_cols=28  Identities=11%  Similarity=0.106  Sum_probs=21.9

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      .|+=|-    +-|++|..++.+|.            .||.|.|.
T Consensus        47 ~~~~v~----~wg~~Ae~~~~~l~------------KG~~V~V~   74 (112)
T PRK06752         47 DFINCV----VWRKSAENVTEYCT------------KGSLVGIT   74 (112)
T ss_pred             EEEEEE----EehHHHHHHHHhcC------------CCCEEEEE
Confidence            577665    46679999999987            88887764


No 31 
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate    transport and metabolism]
Probab=22.34  E-value=35  Score=32.00  Aligned_cols=49  Identities=27%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHH--hcCCCCccCCC-CCCCCEEEEEecceee
Q 026067          107 TWYVVDATDKILGRLASTIAIHI--RGKNLATYTPS-VDMGAYVIVVNAEKVA  156 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~L--rGKhKp~ytP~-~d~GD~VIVINAekI~  156 (244)
                      --+||||+||. +-+.+.+|+.+  +|..-|-=.|. .+.|+..+|-|+.+|.
T Consensus       167 a~~VvDaTGHd-a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~  218 (262)
T COG1635         167 AKAVVDATGHD-AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVY  218 (262)
T ss_pred             EEEEEeCCCCc-hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhcccccc
Confidence            34999999997 45666777665  34444444443 4556666666665553


No 32 
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=21.64  E-value=90  Score=28.33  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=18.2

Q ss_pred             CCCCccccccccccccCCCCcc--ccccccc
Q 026067           20 SSSSFKTLNTGTTISSSTTPFL--GFSVASA   48 (244)
Q Consensus        20 ~~~sf~~~~~~~~~~~~~~~~~--~~~~~~~   48 (244)
                      |+++|.--.++.++.+++|+|+  ||++..+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (236)
T PLN02399         25 PSMAFLVPSLKSSTGISKSAFLSNGFSLKSP   55 (236)
T ss_pred             CccccccceeeeccccccchhhccccccccC
Confidence            3455555556677778888887  5555544


No 33 
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=21.22  E-value=1e+02  Score=27.47  Aligned_cols=11  Identities=27%  Similarity=0.440  Sum_probs=8.8

Q ss_pred             hhHHHHHHHHh
Q 026067          120 RLASTIAIHIR  130 (244)
Q Consensus       120 RLAS~IAk~Lr  130 (244)
                      .|+.+|..+|+
T Consensus        80 qI~kQVeYli~   90 (176)
T PLN02289         80 ELAKEVDYLLR   90 (176)
T ss_pred             HHHHHHHHHHh
Confidence            47788888887


No 34 
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=21.12  E-value=81  Score=27.91  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=22.2

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      .|+=|-    +-|++|..+|++|.            .||.|+|.
T Consensus        53 ~fi~V~----~Wg~~Ae~va~~L~------------KGd~V~V~   80 (186)
T PRK07772         53 LFLRCS----IWRQAAENVAESLT------------KGMRVIVT   80 (186)
T ss_pred             eEEEEE----EecHHHHHHHHhcC------------CCCEEEEE
Confidence            365454    56789999999998            89998886


No 35 
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=20.43  E-value=46  Score=34.12  Aligned_cols=64  Identities=22%  Similarity=0.388  Sum_probs=51.2

Q ss_pred             hhhhhhhcccCCcccceeccCCCCCcccccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067           76 RWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus        76 r~~~~~~e~~g~~~~~kt~~~k~~~~~~~~r~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      |||.+.+|.+|-.|+--   -.++|        +++|++|.+.|-.-.-+-.-=-|.-|-+|.+.++.-..|.|.
T Consensus       187 ~wLg~kAEe~GvEiyPg---~aaSe--------vly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~Tif  250 (621)
T KOG2415|consen  187 RWLGEKAEELGVEIYPG---FAASE--------VLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIF  250 (621)
T ss_pred             HHHHHHHHhhCceeccc---cchhh--------eeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEE
Confidence            99999999999988543   13344        899999999997666666666788999999999888887765


No 36 
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=20.17  E-value=96  Score=26.15  Aligned_cols=28  Identities=29%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 026067          107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV  150 (244)
Q Consensus       107 ~W~IIDA~gqiLGRLAS~IAk~LrGKhKp~ytP~~d~GD~VIVI  150 (244)
                      .|+=|-    .-|++|..++++|.            .||.|.|.
T Consensus        54 ~w~~V~----~wg~~Ae~v~~~l~------------KG~~V~V~   81 (148)
T PRK08182         54 FWAPVE----LWHRDAEHWARLYQ------------KGMRVLVE   81 (148)
T ss_pred             EEEEEE----EEhHHHHHHHHhcC------------CCCEEEEE
Confidence            476554    56789999999998            78877764


Done!